{ "archetype": { "ID": "GS00050", "name": "DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-OH", "glycam": "DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpA", "iupac": "GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA", "iupac_extended": "α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-D-GlcA", "glytoucan": "G66492AD", "wurcs": "WURCS=2.0/3,10,9/[u2122A][a2122h-1a_1-5_2*NCC/3=O][a2122A-1b_1-5]/1-2-3-2-3-2-3-2-3-2/a4-b1_b4-c1_c4-d1_d4-e1_e4-f1_f4-g1_g4-h1_h4-i1_i4-j1", "glycoct": "RES\n1b:b-dglc-HEX-1:5|-1:a\n2b:a-dglc-HEX-1:5\n3s:n-acetyl\n4b:b-dglc-HEX-1:5|-1:a\n5b:a-dglc-HEX-1:5\n6s:n-acetyl\n7b:b-dglc-HEX-1:5|-1:a\n8b:a-dglc-HEX-1:5\n9s:n-acetyl\n10b:b-dglc-HEX-1:5|-1:a\n11b:a-dglc-HEX-1:5\n12s:n-acetyl\n13b:b-dglc-HEX-1:5|-1:a\n14b:a-dglc-HEX-1:5\n15s:n-acetyl\nLIN\n1:1o(4+1)2d\n2:2d(2+1)3n\n3:2o(4+1)4d\n4:4o(4+1)5d\n5:5d(2+1)6n\n6:5o(4+1)7d\n7:7o(4+1)8d\n8:8d(2+1)9n\n9:8o(4+1)10d\n10:10o(4+1)11d\n11:11d(2+1)12n\n12:11o(4+1)13d\n13:13o(4+1)14d\n14:14d(2+1)15n\n", "smiles": "O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](C(=O)O)[C@@H](O[C@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](C(=O)O)[C@@H](O[C@H]6O[C@H](CO)[C@@H](O[C@@H]7O[C@H](C(=O)O)[C@@H](O[C@H]8O[C@H](CO)[C@@H](O[C@@H]9O[C@H](C(=O)O)[C@@H](O[C@H]%10O[C@H](CO)[C@@H](O)[C@H](O)[C@H]%10NC(C)=O)[C@H](O)[C@H]9O)[C@H](O)[C@H]8NC(C)=O)[C@H](O)[C@H]7O)[C@H](O)[C@H]6NC(C)=O)[C@H](O)[C@H]5O)[C@H](O)[C@H]4NC(C)=O)[C@H](O)[C@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@H]1C(=O)O", "oxford": null, "mass": 1913.57, "motifs": [], "termini": [ "GlcNAc(a1-4)" ], "components": { "GlcNAc": 5, "GlcA": 5 }, "composition": { "HexA": 5, "HexNAc": 5 }, "rot_bonds": 1, "hbond_donor": 5, "hbond_acceptor": 6, "entropy": 13.796040625826496, "clusters": { "Cluster 0": 46.72, "Cluster 1": 23.92, "Cluster 2": 17.35, "Cluster 3": 6.06, "Cluster 4": 5.94 }, "coverage_clusters": { "Cluster 0": 62.7737, "Cluster 1": 13.472, "Cluster 2": 6.1661, "Cluster 3": 5.6394, "Cluster 4": 2.7231, "Cluster 5": 2.3198, "Cluster 6": 1.6065, "Cluster 7": 1.1965, "Cluster 8": 0.9932, "Cluster 9": 0.5433, "Cluster 10": 0.49, "Cluster 11": 0.4466, "Cluster 12": 0.3366, "Cluster 13": 0.2, "Cluster 14": 0.19, "Cluster 15": 0.1533, "Cluster 16": 0.1533, "Cluster 17": 0.14, "Cluster 18": 0.0933, "Cluster 19": 0.0867, "Cluster 20": 0.0667, "Cluster 21": 0.0533, "Cluster 22": 0.05, "Cluster 23": 0.0333, "Cluster 24": 0.0333, "Cluster 25": 0.0167, "Cluster 26": 0.0067, "Cluster 27": 0.0067, "Cluster 28": 0.0067, "Cluster 29": 0.0033 }, "silhouette_scores": { "2": 0.49348055120705975, "3": 0.4335808612084093, "4": 0.2763173053435301, "5": 0.2624958878313297, "6": 0.2668872301468443, "7": 0.24927786251613493, "8": 0.25097744555241486 }, "coverage_clusters_per_main": { "0": [ 11, 25, 28 ], "1": [ 0, 21 ], "2": [ 2, 3, 6, 8, 12, 14, 17, 20, 23, 24, 26 ], "3": [ 1, 4, 5, 7, 9, 10, 13, 15, 16, 18, 19, 22, 27, 29 ], "4": [] }, "pca_variance": { "explained_variance_ratio": [ 0.19471279953494627, 0.09830075969541974, 0.06722606433207537, 0.050995902828256535, 0.04530524688187134, 0.029232804954663905, 0.025156024577411888, 0.023343808745721215, 0.021718462133251716, 0.01843915503778966 ], "cumulative_variance": [ 0.19471279953494627, 0.293013559230366, 0.3602396235624413, 0.4112355263906979, 0.4565407732725692, 0.4857735782272331, 0.510929602804645, 0.5342734115503661, 0.5559918736836178, 0.5744310287214075 ], "n_components": 10 }, "length": 1.5, "package": "GROMACS", "forcefield": "GLYCAM_06j", "temperature": 300.0, "pressure": 1.0, "salt": "200" }, "alpha": { "ID": "GS00050", "name": "DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-OH", "glycam": "DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAa1-OH", "iupac": "GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(a1-", "iupac_extended": "α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-α-D-GlcpA-(1→", "glytoucan": "G00810SR", "wurcs": "WURCS=2.0/3,10,9/[a2122A-1a_1-5][a2122h-1a_1-5_2*NCC/3=O][a2122A-1b_1-5]/1-2-3-2-3-2-3-2-3-2/a4-b1_b4-c1_c4-d1_d4-e1_e4-f1_f4-g1_g4-h1_h4-i1_i4-j1" }, "beta": { "ID": "GS00050", "name": "DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-OH", "glycam": "DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-OH", "iupac": "GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-", "iupac_extended": null, "glytoucan": null, "wurcs": null }, "search_meta": { "common_names": [], "description": "", "keywords": [ "GAG" ] } }