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Tags:
chemistry
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smiles
structure-elucidation
Synthetic
adaption-autoscientist
License:
Upload common/exec_gate.py with huggingface_hub
Browse files- common/exec_gate.py +116 -0
common/exec_gate.py
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"""Parallel row-validation harness, shared by every entry.
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Generalized from chartforge/render_check.py, whose ProcessPoolExecutor driver was always
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generic while only its inner check was chart-specific.
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THE RULE THIS MODULE EXISTS TO ENFORCE: **the gate imports the released scorer**, it does
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not reimplement it. If the scorer's semantics change, the gate changes with it, so a row
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can never pass generation-time validation and then fail evaluation-time scoring. Every
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entry passes its own `check_fn`, and every `check_fn` must call into that entry's real
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scorer rather than a lookalike.
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A `check_fn` takes whatever tuple the entry finds convenient, whose first element is the
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row id, and returns `(row_id, ok, reason)`. Reasons are formatted `"bucket: detail"` so
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`drop_reasons()` aggregates them for free.
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from common.exec_gate import check_many, drop_reasons
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verdicts = check_many(items, my_check, workers=8)
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kept = [i for i in items if verdicts[i[0]][0]]
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print(drop_reasons(verdicts))
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"""
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from __future__ import annotations
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import json
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import subprocess
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import sys
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import tempfile
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from collections import Counter
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from concurrent.futures import ProcessPoolExecutor, as_completed
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from pathlib import Path
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from typing import Callable, Sequence
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TIMEOUT_S = 8
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CheckFn = Callable[[tuple], tuple[str, bool, str]]
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def check_many(items: Sequence[tuple], check_fn: CheckFn, workers: int = 8,
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progress_every: int = 2000) -> dict[str, tuple[bool, str]]:
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"""Validate rows in parallel. Execution is CPU-bound, so processes beat threads.
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check_fn must be a module-level function (picklable), not a lambda or closure.
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"""
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results: dict[str, tuple[bool, str]] = {}
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with ProcessPoolExecutor(max_workers=workers) as pool:
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futs = {pool.submit(check_fn, it): it[0] for it in items}
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done = 0
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for fut in as_completed(futs):
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rid, ok, why = fut.result()
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results[rid] = (ok, why)
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done += 1
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if progress_every and done % progress_every == 0:
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kept = sum(1 for v in results.values() if v[0])
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print(f" checked {done}/{len(items)} kept {kept}", flush=True)
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return results
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def drop_reasons(verdicts: dict[str, tuple[bool, str]]) -> dict[str, int]:
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"""Aggregate failures by the bucket prefix before the first colon."""
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return dict(Counter(why.split(":")[0] for ok, why in verdicts.values() if not ok
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).most_common())
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def run_python(code: str, marker: str = "__RESULT__", timeout: int = TIMEOUT_S,
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preamble: str = "") -> object | None:
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"""Execute code in a subprocess and return the JSON printed after `marker`.
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Used by entries that score by executing generated code. The subprocess is the
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isolation boundary: a row that hangs or segfaults costs one worker, not the run.
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"""
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script = (preamble + "\n" + code) if preamble else code
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path = None
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try:
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with tempfile.NamedTemporaryFile("w", suffix=".py", delete=False) as f:
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f.write(script)
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path = f.name
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out = subprocess.run([sys.executable, path], capture_output=True,
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text=True, timeout=timeout)
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for line in out.stdout.splitlines():
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if line.startswith(marker):
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return json.loads(line[len(marker):])
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return None
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except Exception:
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return None
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finally:
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if path:
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try:
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Path(path).unlink(missing_ok=True)
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except Exception:
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pass
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def _echo_check(item: tuple) -> tuple[str, bool, str]:
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"""Module-level so the selftest can pickle it."""
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rid, value = item
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if value < 0:
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return rid, False, "negative: value below zero"
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if value == 0:
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return rid, False, "zero: value is zero"
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return rid, True, "ok"
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def _selftest() -> None:
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items = [("a", 1), ("b", -1), ("c", 0), ("d", 5), ("e", -2)]
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v = check_many(items, _echo_check, workers=2, progress_every=0)
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assert len(v) == 5
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assert [k for k in v if v[k][0]] == ["a", "d"] or set(k for k in v if v[k][0]) == {"a", "d"}
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assert drop_reasons(v) == {"negative": 2, "zero": 1}, drop_reasons(v)
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assert run_python('print("__RESULT__" + __import__("json").dumps([1,2]))') == [1, 2]
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assert run_python('raise SystemExit(1)') is None
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assert run_python('import time; time.sleep(30)', timeout=2) is None
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print("exec_gate selftest: 5/5 OK")
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if __name__ == "__main__":
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_selftest()
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