assay_context large_stringclasses 4
values | assay_id large_stringclasses 11
values | assay_objective large_stringclasses 11
values | biosample large_stringclasses 10
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value | chromosome large_stringclasses 9
values | gene large_stringclasses 11
values | instruction_path large_stringlengths 79 79 | interface_mode large_stringclasses 1
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class | locus_id large_stringclasses 11
values | objective large_stringclasses 10
values | ontology_term large_stringclasses 9
values | oracle_replay bool 1
class | output large_stringclasses 5
values | package_path large_stringlengths 53 53 | private_fields_absent bool 1
class | public_evidence_channels large_stringclasses 1
value | public_evidence_guide_path large_stringlengths 87 87 | public_support_audit bool 1
class | reference_build large_stringclasses 1
value | source_interval large_stringclasses 11
values | subset large_stringclasses 1
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value | wrong_answer_negative_control bool 1
class |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CAGE | cage_liver | prioritize promoter or enhancer edits affecting liver regulatory output | liver | 10 | latent_mining/biology/tasks/apsci_triage_018bc0230b40/solver/candidates.json | pass | chr1 | PCSK9 | latent_mining/biology/tasks/apsci_triage_018bc0230b40/tb_science/instruction.md | adversarial | true | pcsk9_liver | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in liver, using only public sequence and plausibility features. | UBERON:0002107 | true | CAGE | latent_mining/biology/tasks/apsci_triage_018bc0230b40 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_018bc0230b40/solver/public_evidence_guide.json | true | hg38 | chr1:55200000-55400000 | biology | regulatory_variant_triage_cached | apsci_triage_018bc0230b40 | latent_mining/biology/tasks/apsci_triage_018bc0230b40/solver/task.json | search | true |
ChIP | chip_histone_a549 | prioritize distal enhancer or super-enhancer edits in oncology regulatory context | A549 lung epithelial cancer cell line | 10 | latent_mining/biology/tasks/apsci_triage_01d843d085ed/solver/candidates.json | pass | chr8 | MYC | latent_mining/biology/tasks/apsci_triage_01d843d085ed/tb_science/instruction.md | adversarial | true | myc_8q24 | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in A549 lung epithelial cancer cell line, using only public sequence and plausibility features. | EFO:0001086 | true | CHIP_HISTONE | latent_mining/biology/tasks/apsci_triage_01d843d085ed | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_01d843d085ed/solver/public_evidence_guide.json | true | hg38 | chr8:127800000-128050000 | biology | regulatory_variant_triage_cached | apsci_triage_01d843d085ed | latent_mining/biology/tasks/apsci_triage_01d843d085ed/solver/task.json | search | true |
CAGE | cage_liver | prioritize promoter or enhancer edits affecting liver regulatory output | liver | 10 | latent_mining/biology/tasks/apsci_triage_034f4be4f75d/solver/candidates.json | pass | chr1 | PCSK9 | latent_mining/biology/tasks/apsci_triage_034f4be4f75d/tb_science/instruction.md | adversarial | true | pcsk9_liver | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in liver, using only public sequence and plausibility features. | UBERON:0002107 | true | CAGE | latent_mining/biology/tasks/apsci_triage_034f4be4f75d | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_034f4be4f75d/solver/public_evidence_guide.json | true | hg38 | chr1:55200000-55400000 | biology | regulatory_variant_triage_cached | apsci_triage_034f4be4f75d | latent_mining/biology/tasks/apsci_triage_034f4be4f75d/solver/task.json | search | true |
CAGE | cage_hela_s3 | prioritize promoter-like edits affecting CAGE TSS regulatory output | HeLa-S3 cervical cancer cell line | 10 | latent_mining/biology/tasks/apsci_triage_038c54a1c801/solver/candidates.json | pass | chr5 | TERT | latent_mining/biology/tasks/apsci_triage_038c54a1c801/tb_science/instruction.md | adversarial | true | tert_promoter | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in HeLa-S3 cervical cancer cell line, using only public sequence and plausibility features. | EFO:0002791 | true | CAGE | latent_mining/biology/tasks/apsci_triage_038c54a1c801 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_038c54a1c801/solver/public_evidence_guide.json | true | hg38 | chr5:1100000-1300000 | biology | regulatory_variant_triage_cached | apsci_triage_038c54a1c801 | latent_mining/biology/tasks/apsci_triage_038c54a1c801/solver/task.json | search | true |
RNA_SEQ | rna_seq_small_intestine | prioritize intestinal enhancer edits affecting digestive regulatory output | small intestine | 10 | latent_mining/biology/tasks/apsci_triage_045d84e4ad43/solver/candidates.json | pass | chr2 | LCT/MCM6 | latent_mining/biology/tasks/apsci_triage_045d84e4ad43/tb_science/instruction.md | adversarial | true | lct_mcm6 | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome RNA_SEQ objective in small intestine, using only public sequence and plausibility features. | UBERON:0002108 | true | RNA_SEQ | latent_mining/biology/tasks/apsci_triage_045d84e4ad43 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_045d84e4ad43/solver/public_evidence_guide.json | true | hg38 | chr2:136600000-136800000 | biology | regulatory_variant_triage_cached | apsci_triage_045d84e4ad43 | latent_mining/biology/tasks/apsci_triage_045d84e4ad43/solver/task.json | search | true |
ATAC | atac_tcell | prioritize promoter or enhancer edits in T-cell immune-regulatory context | CD4/T cell | 10 | latent_mining/biology/tasks/apsci_triage_059b647310d2/solver/candidates.json | pass | chr10 | IL2RA | latent_mining/biology/tasks/apsci_triage_059b647310d2/tb_science/instruction.md | adversarial | true | il2ra_tcell | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ATAC objective in CD4/T cell, using only public sequence and plausibility features. | CL:0000624 | true | ATAC | latent_mining/biology/tasks/apsci_triage_059b647310d2 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_059b647310d2/solver/public_evidence_guide.json | true | hg38 | chr10:6000000-6150000 | biology | regulatory_variant_triage_cached | apsci_triage_059b647310d2 | latent_mining/biology/tasks/apsci_triage_059b647310d2/solver/task.json | search | true |
ATAC | atac_subcutaneous_adipose | prioritize distal enhancer edits in adipose regulatory context | subcutaneous adipose tissue | 10 | latent_mining/biology/tasks/apsci_triage_060ec3545056/solver/candidates.json | pass | chr16 | FTO/IRX3 | latent_mining/biology/tasks/apsci_triage_060ec3545056/tb_science/instruction.md | adversarial | true | fto_irx3_adipose | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ATAC objective in subcutaneous adipose tissue, using only public sequence and plausibility features. | UBERON:0002190 | true | ATAC | latent_mining/biology/tasks/apsci_triage_060ec3545056 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_060ec3545056/solver/public_evidence_guide.json | true | hg38 | chr16:53700000-53900000 | biology | regulatory_variant_triage_cached | apsci_triage_060ec3545056 | latent_mining/biology/tasks/apsci_triage_060ec3545056/solver/task.json | search | true |
RNA_SEQ | rna_seq_beta_cell | prioritize beta-cell promoter or enhancer edits affecting endocrine RNA-seq regulatory output | type B pancreatic cell | 10 | latent_mining/biology/tasks/apsci_triage_098797bb3844/solver/candidates.json | pass | chr11 | INS | latent_mining/biology/tasks/apsci_triage_098797bb3844/tb_science/instruction.md | adversarial | true | ins_islet | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome RNA_SEQ objective in type B pancreatic cell, using only public sequence and plausibility features. | CL:0000169 | true | RNA_SEQ | latent_mining/biology/tasks/apsci_triage_098797bb3844 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_098797bb3844/solver/public_evidence_guide.json | true | hg38 | chr11:2100000-2300000 | biology | regulatory_variant_triage_cached | apsci_triage_098797bb3844 | latent_mining/biology/tasks/apsci_triage_098797bb3844/solver/task.json | search | true |
CAGE | cage_liver | prioritize promoter or enhancer edits affecting liver regulatory output | liver | 10 | latent_mining/biology/tasks/apsci_triage_0a6f8c4b683b/solver/candidates.json | pass | chr1 | PCSK9 | latent_mining/biology/tasks/apsci_triage_0a6f8c4b683b/tb_science/instruction.md | adversarial | true | pcsk9_liver | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in liver, using only public sequence and plausibility features. | UBERON:0002107 | true | CAGE | latent_mining/biology/tasks/apsci_triage_0a6f8c4b683b | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_0a6f8c4b683b/solver/public_evidence_guide.json | true | hg38 | chr1:55200000-55400000 | biology | regulatory_variant_triage_cached | apsci_triage_0a6f8c4b683b | latent_mining/biology/tasks/apsci_triage_0a6f8c4b683b/solver/task.json | search | true |
RNA_SEQ | rna_seq_small_intestine | prioritize intestinal enhancer edits affecting digestive regulatory output | small intestine | 10 | latent_mining/biology/tasks/apsci_triage_0acaba7a7df6/solver/candidates.json | pass | chr2 | LCT/MCM6 | latent_mining/biology/tasks/apsci_triage_0acaba7a7df6/tb_science/instruction.md | adversarial | true | lct_mcm6 | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome RNA_SEQ objective in small intestine, using only public sequence and plausibility features. | UBERON:0002108 | true | RNA_SEQ | latent_mining/biology/tasks/apsci_triage_0acaba7a7df6 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_0acaba7a7df6/solver/public_evidence_guide.json | true | hg38 | chr2:136600000-136800000 | biology | regulatory_variant_triage_cached | apsci_triage_0acaba7a7df6 | latent_mining/biology/tasks/apsci_triage_0acaba7a7df6/solver/task.json | search | true |
ChIP | chip_histone_a549 | prioritize distal enhancer or super-enhancer edits in oncology regulatory context | A549 lung epithelial cancer cell line | 10 | latent_mining/biology/tasks/apsci_triage_0b1b652d7c4f/solver/candidates.json | pass | chr8 | MYC | latent_mining/biology/tasks/apsci_triage_0b1b652d7c4f/tb_science/instruction.md | adversarial | true | myc_8q24 | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in A549 lung epithelial cancer cell line, using only public sequence and plausibility features. | EFO:0001086 | true | CHIP_HISTONE | latent_mining/biology/tasks/apsci_triage_0b1b652d7c4f | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_0b1b652d7c4f/solver/public_evidence_guide.json | true | hg38 | chr8:127800000-128050000 | biology | regulatory_variant_triage_cached | apsci_triage_0b1b652d7c4f | latent_mining/biology/tasks/apsci_triage_0b1b652d7c4f/solver/task.json | search | true |
CAGE | cage_liver | prioritize promoter or enhancer edits affecting liver regulatory output | liver | 10 | latent_mining/biology/tasks/apsci_triage_0b6ecd452509/solver/candidates.json | pass | chr1 | PCSK9 | latent_mining/biology/tasks/apsci_triage_0b6ecd452509/tb_science/instruction.md | adversarial | true | pcsk9_liver | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in liver, using only public sequence and plausibility features. | UBERON:0002107 | true | CAGE | latent_mining/biology/tasks/apsci_triage_0b6ecd452509 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_0b6ecd452509/solver/public_evidence_guide.json | true | hg38 | chr1:55200000-55400000 | biology | regulatory_variant_triage_cached | apsci_triage_0b6ecd452509 | latent_mining/biology/tasks/apsci_triage_0b6ecd452509/solver/task.json | search | true |
CAGE | cage_hela_s3 | prioritize promoter-like edits affecting CAGE TSS regulatory output | HeLa-S3 cervical cancer cell line | 10 | latent_mining/biology/tasks/apsci_triage_0b8d82104da5/solver/candidates.json | pass | chr5 | TERT | latent_mining/biology/tasks/apsci_triage_0b8d82104da5/tb_science/instruction.md | adversarial | true | tert_promoter | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in HeLa-S3 cervical cancer cell line, using only public sequence and plausibility features. | EFO:0002791 | true | CAGE | latent_mining/biology/tasks/apsci_triage_0b8d82104da5 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_0b8d82104da5/solver/public_evidence_guide.json | true | hg38 | chr5:1100000-1300000 | biology | regulatory_variant_triage_cached | apsci_triage_0b8d82104da5 | latent_mining/biology/tasks/apsci_triage_0b8d82104da5/solver/task.json | search | true |
ChIP | chip_erythroblast_tf | prioritize TF-bound enhancer edits affecting erythroid hemoglobin-switching regulatory output | erythroblast | 10 | latent_mining/biology/tasks/apsci_triage_0ca4f2d706cd/solver/candidates.json | pass | chr2 | BCL11A | latent_mining/biology/tasks/apsci_triage_0ca4f2d706cd/tb_science/instruction.md | adversarial | true | bcl11a_erythroid | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroblast, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_0ca4f2d706cd | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_0ca4f2d706cd/solver/public_evidence_guide.json | true | hg38 | chr2:60500000-60800000 | biology | regulatory_variant_triage_cached | apsci_triage_0ca4f2d706cd | latent_mining/biology/tasks/apsci_triage_0ca4f2d706cd/solver/task.json | search | true |
ChIP | chip_erythroblast_tf | prioritize TF-bound enhancer edits affecting erythroid hemoglobin-switching regulatory output | erythroblast | 10 | latent_mining/biology/tasks/apsci_triage_0d05cc727176/solver/candidates.json | pass | chr2 | BCL11A | latent_mining/biology/tasks/apsci_triage_0d05cc727176/tb_science/instruction.md | adversarial | true | bcl11a_erythroid | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroblast, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_0d05cc727176 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_0d05cc727176/solver/public_evidence_guide.json | true | hg38 | chr2:60500000-60800000 | biology | regulatory_variant_triage_cached | apsci_triage_0d05cc727176 | latent_mining/biology/tasks/apsci_triage_0d05cc727176/solver/task.json | search | true |
ATAC | atac_subcutaneous_adipose | prioritize distal enhancer edits in adipose regulatory context | subcutaneous adipose tissue | 10 | latent_mining/biology/tasks/apsci_triage_0da6ab2d8cf0/solver/candidates.json | pass | chr16 | FTO/IRX3 | latent_mining/biology/tasks/apsci_triage_0da6ab2d8cf0/tb_science/instruction.md | adversarial | true | fto_irx3_adipose | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ATAC objective in subcutaneous adipose tissue, using only public sequence and plausibility features. | UBERON:0002190 | true | ATAC | latent_mining/biology/tasks/apsci_triage_0da6ab2d8cf0 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_0da6ab2d8cf0/solver/public_evidence_guide.json | true | hg38 | chr16:53700000-53900000 | biology | regulatory_variant_triage_cached | apsci_triage_0da6ab2d8cf0 | latent_mining/biology/tasks/apsci_triage_0da6ab2d8cf0/solver/task.json | search | true |
CAGE | cage_hela_s3 | prioritize promoter-like edits affecting CAGE TSS regulatory output | HeLa-S3 cervical cancer cell line | 10 | latent_mining/biology/tasks/apsci_triage_0f196e892e53/solver/candidates.json | pass | chr5 | TERT | latent_mining/biology/tasks/apsci_triage_0f196e892e53/tb_science/instruction.md | adversarial | true | tert_promoter | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in HeLa-S3 cervical cancer cell line, using only public sequence and plausibility features. | EFO:0002791 | true | CAGE | latent_mining/biology/tasks/apsci_triage_0f196e892e53 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_0f196e892e53/solver/public_evidence_guide.json | true | hg38 | chr5:1100000-1300000 | biology | regulatory_variant_triage_cached | apsci_triage_0f196e892e53 | latent_mining/biology/tasks/apsci_triage_0f196e892e53/solver/task.json | search | true |
ChIP | chip_erythroid_tf | prioritize TF-bound promoter/enhancer edits in erythroid or megakaryocytic context | erythroid/megakaryocytic | 10 | latent_mining/biology/tasks/apsci_triage_148fac15d81c/solver/candidates.json | pass | chrX | GATA1 | latent_mining/biology/tasks/apsci_triage_148fac15d81c/tb_science/instruction.md | adversarial | true | gata1_chrx | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroid/megakaryocytic, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_148fac15d81c | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_148fac15d81c/solver/public_evidence_guide.json | true | hg38 | chrX:48500000-48700000 | biology | regulatory_variant_triage_cached | apsci_triage_148fac15d81c | latent_mining/biology/tasks/apsci_triage_148fac15d81c/solver/task.json | search | true |
CAGE | cage_hela_s3 | prioritize promoter-like edits affecting CAGE TSS regulatory output | HeLa-S3 cervical cancer cell line | 10 | latent_mining/biology/tasks/apsci_triage_190c3a75b807/solver/candidates.json | pass | chr5 | TERT | latent_mining/biology/tasks/apsci_triage_190c3a75b807/tb_science/instruction.md | adversarial | true | tert_promoter | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in HeLa-S3 cervical cancer cell line, using only public sequence and plausibility features. | EFO:0002791 | true | CAGE | latent_mining/biology/tasks/apsci_triage_190c3a75b807 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_190c3a75b807/solver/public_evidence_guide.json | true | hg38 | chr5:1100000-1300000 | biology | regulatory_variant_triage_cached | apsci_triage_190c3a75b807 | latent_mining/biology/tasks/apsci_triage_190c3a75b807/solver/task.json | search | true |
CAGE | cage_hela_s3 | prioritize promoter-like edits affecting CAGE TSS regulatory output | HeLa-S3 cervical cancer cell line | 10 | latent_mining/biology/tasks/apsci_triage_1a4a51ce41f6/solver/candidates.json | pass | chr5 | TERT | latent_mining/biology/tasks/apsci_triage_1a4a51ce41f6/tb_science/instruction.md | adversarial | true | tert_promoter | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in HeLa-S3 cervical cancer cell line, using only public sequence and plausibility features. | EFO:0002791 | true | CAGE | latent_mining/biology/tasks/apsci_triage_1a4a51ce41f6 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_1a4a51ce41f6/solver/public_evidence_guide.json | true | hg38 | chr5:1100000-1300000 | biology | regulatory_variant_triage_cached | apsci_triage_1a4a51ce41f6 | latent_mining/biology/tasks/apsci_triage_1a4a51ce41f6/solver/task.json | search | true |
ChIP | chip_erythroblast_lcr_tf | prioritize TF-bound locus-control-region enhancer edits in erythroblast regulatory context | erythroblast | 10 | latent_mining/biology/tasks/apsci_triage_1ded69978d25/solver/candidates.json | pass | chr11 | HBB/HBE | latent_mining/biology/tasks/apsci_triage_1ded69978d25/tb_science/instruction.md | adversarial | true | hbb_lcr | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroblast, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_1ded69978d25 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_1ded69978d25/solver/public_evidence_guide.json | true | hg38 | chr11:5200000-5300000 | biology | regulatory_variant_triage_cached | apsci_triage_1ded69978d25 | latent_mining/biology/tasks/apsci_triage_1ded69978d25/solver/task.json | search | true |
RNA_SEQ | rna_seq_beta_cell | prioritize beta-cell promoter or enhancer edits affecting endocrine RNA-seq regulatory output | type B pancreatic cell | 10 | latent_mining/biology/tasks/apsci_triage_1f18d39dcc00/solver/candidates.json | pass | chr11 | INS | latent_mining/biology/tasks/apsci_triage_1f18d39dcc00/tb_science/instruction.md | adversarial | true | ins_islet | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome RNA_SEQ objective in type B pancreatic cell, using only public sequence and plausibility features. | CL:0000169 | true | RNA_SEQ | latent_mining/biology/tasks/apsci_triage_1f18d39dcc00 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_1f18d39dcc00/solver/public_evidence_guide.json | true | hg38 | chr11:2100000-2300000 | biology | regulatory_variant_triage_cached | apsci_triage_1f18d39dcc00 | latent_mining/biology/tasks/apsci_triage_1f18d39dcc00/solver/task.json | search | true |
RNA_SEQ | rna_seq_airway_epithelial | prioritize airway epithelial promoter or enhancer edits affecting RNA-seq regulatory output | airway epithelial cell | 10 | latent_mining/biology/tasks/apsci_triage_1fc12cd15415/solver/candidates.json | pass | chr7 | CFTR | latent_mining/biology/tasks/apsci_triage_1fc12cd15415/tb_science/instruction.md | adversarial | true | cftr_epithelial | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome RNA_SEQ objective in airway epithelial cell, using only public sequence and plausibility features. | CL:0002368 | true | RNA_SEQ | latent_mining/biology/tasks/apsci_triage_1fc12cd15415 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_1fc12cd15415/solver/public_evidence_guide.json | true | hg38 | chr7:117500000-117700000 | biology | regulatory_variant_triage_cached | apsci_triage_1fc12cd15415 | latent_mining/biology/tasks/apsci_triage_1fc12cd15415/solver/task.json | search | true |
RNA_SEQ | rna_seq_beta_cell | prioritize beta-cell promoter or enhancer edits affecting endocrine RNA-seq regulatory output | type B pancreatic cell | 10 | latent_mining/biology/tasks/apsci_triage_22d582c8efaf/solver/candidates.json | pass | chr11 | INS | latent_mining/biology/tasks/apsci_triage_22d582c8efaf/tb_science/instruction.md | adversarial | true | ins_islet | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome RNA_SEQ objective in type B pancreatic cell, using only public sequence and plausibility features. | CL:0000169 | true | RNA_SEQ | latent_mining/biology/tasks/apsci_triage_22d582c8efaf | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_22d582c8efaf/solver/public_evidence_guide.json | true | hg38 | chr11:2100000-2300000 | biology | regulatory_variant_triage_cached | apsci_triage_22d582c8efaf | latent_mining/biology/tasks/apsci_triage_22d582c8efaf/solver/task.json | search | true |
ATAC | atac_subcutaneous_adipose | prioritize distal enhancer edits in adipose regulatory context | subcutaneous adipose tissue | 10 | latent_mining/biology/tasks/apsci_triage_238881b9c961/solver/candidates.json | pass | chr16 | FTO/IRX3 | latent_mining/biology/tasks/apsci_triage_238881b9c961/tb_science/instruction.md | adversarial | true | fto_irx3_adipose | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ATAC objective in subcutaneous adipose tissue, using only public sequence and plausibility features. | UBERON:0002190 | true | ATAC | latent_mining/biology/tasks/apsci_triage_238881b9c961 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_238881b9c961/solver/public_evidence_guide.json | true | hg38 | chr16:53700000-53900000 | biology | regulatory_variant_triage_cached | apsci_triage_238881b9c961 | latent_mining/biology/tasks/apsci_triage_238881b9c961/solver/task.json | search | true |
RNA_SEQ | rna_seq_small_intestine | prioritize intestinal enhancer edits affecting digestive regulatory output | small intestine | 10 | latent_mining/biology/tasks/apsci_triage_23ae7052234a/solver/candidates.json | pass | chr2 | LCT/MCM6 | latent_mining/biology/tasks/apsci_triage_23ae7052234a/tb_science/instruction.md | adversarial | true | lct_mcm6 | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome RNA_SEQ objective in small intestine, using only public sequence and plausibility features. | UBERON:0002108 | true | RNA_SEQ | latent_mining/biology/tasks/apsci_triage_23ae7052234a | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_23ae7052234a/solver/public_evidence_guide.json | true | hg38 | chr2:136600000-136800000 | biology | regulatory_variant_triage_cached | apsci_triage_23ae7052234a | latent_mining/biology/tasks/apsci_triage_23ae7052234a/solver/task.json | search | true |
ChIP | chip_erythroblast_tf | prioritize TF-bound enhancer edits affecting erythroid hemoglobin-switching regulatory output | erythroblast | 10 | latent_mining/biology/tasks/apsci_triage_24623c135fbe/solver/candidates.json | pass | chr2 | BCL11A | latent_mining/biology/tasks/apsci_triage_24623c135fbe/tb_science/instruction.md | adversarial | true | bcl11a_erythroid | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroblast, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_24623c135fbe | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_24623c135fbe/solver/public_evidence_guide.json | true | hg38 | chr2:60500000-60800000 | biology | regulatory_variant_triage_cached | apsci_triage_24623c135fbe | latent_mining/biology/tasks/apsci_triage_24623c135fbe/solver/task.json | search | true |
CAGE | cage_hela_s3 | prioritize promoter-like edits affecting CAGE TSS regulatory output | HeLa-S3 cervical cancer cell line | 10 | latent_mining/biology/tasks/apsci_triage_26262170e717/solver/candidates.json | pass | chr5 | TERT | latent_mining/biology/tasks/apsci_triage_26262170e717/tb_science/instruction.md | adversarial | true | tert_promoter | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in HeLa-S3 cervical cancer cell line, using only public sequence and plausibility features. | EFO:0002791 | true | CAGE | latent_mining/biology/tasks/apsci_triage_26262170e717 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_26262170e717/solver/public_evidence_guide.json | true | hg38 | chr5:1100000-1300000 | biology | regulatory_variant_triage_cached | apsci_triage_26262170e717 | latent_mining/biology/tasks/apsci_triage_26262170e717/solver/task.json | search | true |
RNA_SEQ | rna_seq_airway_epithelial | prioritize airway epithelial promoter or enhancer edits affecting RNA-seq regulatory output | airway epithelial cell | 10 | latent_mining/biology/tasks/apsci_triage_27668c2e049d/solver/candidates.json | pass | chr7 | CFTR | latent_mining/biology/tasks/apsci_triage_27668c2e049d/tb_science/instruction.md | adversarial | true | cftr_epithelial | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome RNA_SEQ objective in airway epithelial cell, using only public sequence and plausibility features. | CL:0002368 | true | RNA_SEQ | latent_mining/biology/tasks/apsci_triage_27668c2e049d | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_27668c2e049d/solver/public_evidence_guide.json | true | hg38 | chr7:117500000-117700000 | biology | regulatory_variant_triage_cached | apsci_triage_27668c2e049d | latent_mining/biology/tasks/apsci_triage_27668c2e049d/solver/task.json | search | true |
ChIP | chip_erythroblast_lcr_tf | prioritize TF-bound locus-control-region enhancer edits in erythroblast regulatory context | erythroblast | 10 | latent_mining/biology/tasks/apsci_triage_283da1e2c928/solver/candidates.json | pass | chr11 | HBB/HBE | latent_mining/biology/tasks/apsci_triage_283da1e2c928/tb_science/instruction.md | adversarial | true | hbb_lcr | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroblast, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_283da1e2c928 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_283da1e2c928/solver/public_evidence_guide.json | true | hg38 | chr11:5200000-5300000 | biology | regulatory_variant_triage_cached | apsci_triage_283da1e2c928 | latent_mining/biology/tasks/apsci_triage_283da1e2c928/solver/task.json | search | true |
ATAC | atac_subcutaneous_adipose | prioritize distal enhancer edits in adipose regulatory context | subcutaneous adipose tissue | 10 | latent_mining/biology/tasks/apsci_triage_2cb79fea6982/solver/candidates.json | pass | chr16 | FTO/IRX3 | latent_mining/biology/tasks/apsci_triage_2cb79fea6982/tb_science/instruction.md | adversarial | true | fto_irx3_adipose | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ATAC objective in subcutaneous adipose tissue, using only public sequence and plausibility features. | UBERON:0002190 | true | ATAC | latent_mining/biology/tasks/apsci_triage_2cb79fea6982 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_2cb79fea6982/solver/public_evidence_guide.json | true | hg38 | chr16:53700000-53900000 | biology | regulatory_variant_triage_cached | apsci_triage_2cb79fea6982 | latent_mining/biology/tasks/apsci_triage_2cb79fea6982/solver/task.json | search | true |
ChIP | chip_erythroblast_tf | prioritize TF-bound enhancer edits affecting erythroid hemoglobin-switching regulatory output | erythroblast | 10 | latent_mining/biology/tasks/apsci_triage_2d34678e7412/solver/candidates.json | pass | chr2 | BCL11A | latent_mining/biology/tasks/apsci_triage_2d34678e7412/tb_science/instruction.md | adversarial | true | bcl11a_erythroid | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroblast, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_2d34678e7412 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_2d34678e7412/solver/public_evidence_guide.json | true | hg38 | chr2:60500000-60800000 | biology | regulatory_variant_triage_cached | apsci_triage_2d34678e7412 | latent_mining/biology/tasks/apsci_triage_2d34678e7412/solver/task.json | search | true |
ChIP | chip_erythroblast_lcr_tf | prioritize TF-bound locus-control-region enhancer edits in erythroblast regulatory context | erythroblast | 10 | latent_mining/biology/tasks/apsci_triage_2ed7eaf36182/solver/candidates.json | pass | chr11 | HBB/HBE | latent_mining/biology/tasks/apsci_triage_2ed7eaf36182/tb_science/instruction.md | adversarial | true | hbb_lcr | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroblast, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_2ed7eaf36182 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_2ed7eaf36182/solver/public_evidence_guide.json | true | hg38 | chr11:5200000-5300000 | biology | regulatory_variant_triage_cached | apsci_triage_2ed7eaf36182 | latent_mining/biology/tasks/apsci_triage_2ed7eaf36182/solver/task.json | search | true |
RNA_SEQ | rna_seq_small_intestine | prioritize intestinal enhancer edits affecting digestive regulatory output | small intestine | 10 | latent_mining/biology/tasks/apsci_triage_30e1ec35b83d/solver/candidates.json | pass | chr2 | LCT/MCM6 | latent_mining/biology/tasks/apsci_triage_30e1ec35b83d/tb_science/instruction.md | adversarial | true | lct_mcm6 | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome RNA_SEQ objective in small intestine, using only public sequence and plausibility features. | UBERON:0002108 | true | RNA_SEQ | latent_mining/biology/tasks/apsci_triage_30e1ec35b83d | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_30e1ec35b83d/solver/public_evidence_guide.json | true | hg38 | chr2:136600000-136800000 | biology | regulatory_variant_triage_cached | apsci_triage_30e1ec35b83d | latent_mining/biology/tasks/apsci_triage_30e1ec35b83d/solver/task.json | search | true |
RNA_SEQ | rna_seq_airway_epithelial | prioritize airway epithelial promoter or enhancer edits affecting RNA-seq regulatory output | airway epithelial cell | 10 | latent_mining/biology/tasks/apsci_triage_30fdb0c7db5b/solver/candidates.json | pass | chr7 | CFTR | latent_mining/biology/tasks/apsci_triage_30fdb0c7db5b/tb_science/instruction.md | adversarial | true | cftr_epithelial | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome RNA_SEQ objective in airway epithelial cell, using only public sequence and plausibility features. | CL:0002368 | true | RNA_SEQ | latent_mining/biology/tasks/apsci_triage_30fdb0c7db5b | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_30fdb0c7db5b/solver/public_evidence_guide.json | true | hg38 | chr7:117500000-117700000 | biology | regulatory_variant_triage_cached | apsci_triage_30fdb0c7db5b | latent_mining/biology/tasks/apsci_triage_30fdb0c7db5b/solver/task.json | search | true |
ATAC | atac_tcell | prioritize promoter or enhancer edits in T-cell immune-regulatory context | CD4/T cell | 10 | latent_mining/biology/tasks/apsci_triage_31e280d77332/solver/candidates.json | pass | chr10 | IL2RA | latent_mining/biology/tasks/apsci_triage_31e280d77332/tb_science/instruction.md | adversarial | true | il2ra_tcell | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ATAC objective in CD4/T cell, using only public sequence and plausibility features. | CL:0000624 | true | ATAC | latent_mining/biology/tasks/apsci_triage_31e280d77332 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_31e280d77332/solver/public_evidence_guide.json | true | hg38 | chr10:6000000-6150000 | biology | regulatory_variant_triage_cached | apsci_triage_31e280d77332 | latent_mining/biology/tasks/apsci_triage_31e280d77332/solver/task.json | search | true |
CAGE | cage_hela_s3 | prioritize promoter-like edits affecting CAGE TSS regulatory output | HeLa-S3 cervical cancer cell line | 10 | latent_mining/biology/tasks/apsci_triage_349cdeee1532/solver/candidates.json | pass | chr5 | TERT | latent_mining/biology/tasks/apsci_triage_349cdeee1532/tb_science/instruction.md | adversarial | true | tert_promoter | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in HeLa-S3 cervical cancer cell line, using only public sequence and plausibility features. | EFO:0002791 | true | CAGE | latent_mining/biology/tasks/apsci_triage_349cdeee1532 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_349cdeee1532/solver/public_evidence_guide.json | true | hg38 | chr5:1100000-1300000 | biology | regulatory_variant_triage_cached | apsci_triage_349cdeee1532 | latent_mining/biology/tasks/apsci_triage_349cdeee1532/solver/task.json | search | true |
ChIP | chip_erythroblast_lcr_tf | prioritize TF-bound locus-control-region enhancer edits in erythroblast regulatory context | erythroblast | 10 | latent_mining/biology/tasks/apsci_triage_35393fadc21f/solver/candidates.json | pass | chr11 | HBB/HBE | latent_mining/biology/tasks/apsci_triage_35393fadc21f/tb_science/instruction.md | adversarial | true | hbb_lcr | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroblast, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_35393fadc21f | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_35393fadc21f/solver/public_evidence_guide.json | true | hg38 | chr11:5200000-5300000 | biology | regulatory_variant_triage_cached | apsci_triage_35393fadc21f | latent_mining/biology/tasks/apsci_triage_35393fadc21f/solver/task.json | search | true |
ATAC | atac_tcell | prioritize promoter or enhancer edits in T-cell immune-regulatory context | CD4/T cell | 10 | latent_mining/biology/tasks/apsci_triage_3751f6faa8e6/solver/candidates.json | pass | chr10 | IL2RA | latent_mining/biology/tasks/apsci_triage_3751f6faa8e6/tb_science/instruction.md | adversarial | true | il2ra_tcell | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ATAC objective in CD4/T cell, using only public sequence and plausibility features. | CL:0000624 | true | ATAC | latent_mining/biology/tasks/apsci_triage_3751f6faa8e6 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_3751f6faa8e6/solver/public_evidence_guide.json | true | hg38 | chr10:6000000-6150000 | biology | regulatory_variant_triage_cached | apsci_triage_3751f6faa8e6 | latent_mining/biology/tasks/apsci_triage_3751f6faa8e6/solver/task.json | search | true |
RNA_SEQ | rna_seq_airway_epithelial | prioritize airway epithelial promoter or enhancer edits affecting RNA-seq regulatory output | airway epithelial cell | 10 | latent_mining/biology/tasks/apsci_triage_380f0dc939d3/solver/candidates.json | pass | chr7 | CFTR | latent_mining/biology/tasks/apsci_triage_380f0dc939d3/tb_science/instruction.md | adversarial | true | cftr_epithelial | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome RNA_SEQ objective in airway epithelial cell, using only public sequence and plausibility features. | CL:0002368 | true | RNA_SEQ | latent_mining/biology/tasks/apsci_triage_380f0dc939d3 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_380f0dc939d3/solver/public_evidence_guide.json | true | hg38 | chr7:117500000-117700000 | biology | regulatory_variant_triage_cached | apsci_triage_380f0dc939d3 | latent_mining/biology/tasks/apsci_triage_380f0dc939d3/solver/task.json | search | true |
ATAC | atac_subcutaneous_adipose | prioritize distal enhancer edits in adipose regulatory context | subcutaneous adipose tissue | 10 | latent_mining/biology/tasks/apsci_triage_39c6dd97a117/solver/candidates.json | pass | chr16 | FTO/IRX3 | latent_mining/biology/tasks/apsci_triage_39c6dd97a117/tb_science/instruction.md | adversarial | true | fto_irx3_adipose | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ATAC objective in subcutaneous adipose tissue, using only public sequence and plausibility features. | UBERON:0002190 | true | ATAC | latent_mining/biology/tasks/apsci_triage_39c6dd97a117 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_39c6dd97a117/solver/public_evidence_guide.json | true | hg38 | chr16:53700000-53900000 | biology | regulatory_variant_triage_cached | apsci_triage_39c6dd97a117 | latent_mining/biology/tasks/apsci_triage_39c6dd97a117/solver/task.json | search | true |
RNA_SEQ | rna_seq_small_intestine | prioritize intestinal enhancer edits affecting digestive regulatory output | small intestine | 10 | latent_mining/biology/tasks/apsci_triage_431fa109e926/solver/candidates.json | pass | chr2 | LCT/MCM6 | latent_mining/biology/tasks/apsci_triage_431fa109e926/tb_science/instruction.md | adversarial | true | lct_mcm6 | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome RNA_SEQ objective in small intestine, using only public sequence and plausibility features. | UBERON:0002108 | true | RNA_SEQ | latent_mining/biology/tasks/apsci_triage_431fa109e926 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_431fa109e926/solver/public_evidence_guide.json | true | hg38 | chr2:136600000-136800000 | biology | regulatory_variant_triage_cached | apsci_triage_431fa109e926 | latent_mining/biology/tasks/apsci_triage_431fa109e926/solver/task.json | search | true |
ChIP | chip_histone_a549 | prioritize distal enhancer or super-enhancer edits in oncology regulatory context | A549 lung epithelial cancer cell line | 10 | latent_mining/biology/tasks/apsci_triage_4866137c529f/solver/candidates.json | pass | chr8 | MYC | latent_mining/biology/tasks/apsci_triage_4866137c529f/tb_science/instruction.md | adversarial | true | myc_8q24 | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in A549 lung epithelial cancer cell line, using only public sequence and plausibility features. | EFO:0001086 | true | CHIP_HISTONE | latent_mining/biology/tasks/apsci_triage_4866137c529f | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_4866137c529f/solver/public_evidence_guide.json | true | hg38 | chr8:127800000-128050000 | biology | regulatory_variant_triage_cached | apsci_triage_4866137c529f | latent_mining/biology/tasks/apsci_triage_4866137c529f/solver/task.json | search | true |
ChIP | chip_erythroblast_lcr_tf | prioritize TF-bound locus-control-region enhancer edits in erythroblast regulatory context | erythroblast | 10 | latent_mining/biology/tasks/apsci_triage_497bc4b77fbd/solver/candidates.json | pass | chr11 | HBB/HBE | latent_mining/biology/tasks/apsci_triage_497bc4b77fbd/tb_science/instruction.md | adversarial | true | hbb_lcr | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroblast, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_497bc4b77fbd | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_497bc4b77fbd/solver/public_evidence_guide.json | true | hg38 | chr11:5200000-5300000 | biology | regulatory_variant_triage_cached | apsci_triage_497bc4b77fbd | latent_mining/biology/tasks/apsci_triage_497bc4b77fbd/solver/task.json | search | true |
ATAC | atac_tcell | prioritize promoter or enhancer edits in T-cell immune-regulatory context | CD4/T cell | 10 | latent_mining/biology/tasks/apsci_triage_4bdcbf0d0e58/solver/candidates.json | pass | chr10 | IL2RA | latent_mining/biology/tasks/apsci_triage_4bdcbf0d0e58/tb_science/instruction.md | adversarial | true | il2ra_tcell | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ATAC objective in CD4/T cell, using only public sequence and plausibility features. | CL:0000624 | true | ATAC | latent_mining/biology/tasks/apsci_triage_4bdcbf0d0e58 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_4bdcbf0d0e58/solver/public_evidence_guide.json | true | hg38 | chr10:6000000-6150000 | biology | regulatory_variant_triage_cached | apsci_triage_4bdcbf0d0e58 | latent_mining/biology/tasks/apsci_triage_4bdcbf0d0e58/solver/task.json | search | true |
CAGE | cage_liver | prioritize promoter or enhancer edits affecting liver regulatory output | liver | 10 | latent_mining/biology/tasks/apsci_triage_4c13ac4d079e/solver/candidates.json | pass | chr1 | PCSK9 | latent_mining/biology/tasks/apsci_triage_4c13ac4d079e/tb_science/instruction.md | adversarial | true | pcsk9_liver | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in liver, using only public sequence and plausibility features. | UBERON:0002107 | true | CAGE | latent_mining/biology/tasks/apsci_triage_4c13ac4d079e | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_4c13ac4d079e/solver/public_evidence_guide.json | true | hg38 | chr1:55200000-55400000 | biology | regulatory_variant_triage_cached | apsci_triage_4c13ac4d079e | latent_mining/biology/tasks/apsci_triage_4c13ac4d079e/solver/task.json | search | true |
ChIP | chip_erythroblast_tf | prioritize TF-bound enhancer edits affecting erythroid hemoglobin-switching regulatory output | erythroblast | 10 | latent_mining/biology/tasks/apsci_triage_4eb2be129d3f/solver/candidates.json | pass | chr2 | BCL11A | latent_mining/biology/tasks/apsci_triage_4eb2be129d3f/tb_science/instruction.md | adversarial | true | bcl11a_erythroid | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroblast, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_4eb2be129d3f | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_4eb2be129d3f/solver/public_evidence_guide.json | true | hg38 | chr2:60500000-60800000 | biology | regulatory_variant_triage_cached | apsci_triage_4eb2be129d3f | latent_mining/biology/tasks/apsci_triage_4eb2be129d3f/solver/task.json | search | true |
ChIP | chip_erythroblast_tf | prioritize TF-bound enhancer edits affecting erythroid hemoglobin-switching regulatory output | erythroblast | 10 | latent_mining/biology/tasks/apsci_triage_4fcbc1adbce5/solver/candidates.json | pass | chr2 | BCL11A | latent_mining/biology/tasks/apsci_triage_4fcbc1adbce5/tb_science/instruction.md | adversarial | true | bcl11a_erythroid | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroblast, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_4fcbc1adbce5 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_4fcbc1adbce5/solver/public_evidence_guide.json | true | hg38 | chr2:60500000-60800000 | biology | regulatory_variant_triage_cached | apsci_triage_4fcbc1adbce5 | latent_mining/biology/tasks/apsci_triage_4fcbc1adbce5/solver/task.json | search | true |
ChIP | chip_erythroid_tf | prioritize TF-bound promoter/enhancer edits in erythroid or megakaryocytic context | erythroid/megakaryocytic | 10 | latent_mining/biology/tasks/apsci_triage_51a4caf9f4fc/solver/candidates.json | pass | chrX | GATA1 | latent_mining/biology/tasks/apsci_triage_51a4caf9f4fc/tb_science/instruction.md | adversarial | true | gata1_chrx | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroid/megakaryocytic, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_51a4caf9f4fc | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_51a4caf9f4fc/solver/public_evidence_guide.json | true | hg38 | chrX:48500000-48700000 | biology | regulatory_variant_triage_cached | apsci_triage_51a4caf9f4fc | latent_mining/biology/tasks/apsci_triage_51a4caf9f4fc/solver/task.json | search | true |
ChIP | chip_erythroid_tf | prioritize TF-bound promoter/enhancer edits in erythroid or megakaryocytic context | erythroid/megakaryocytic | 10 | latent_mining/biology/tasks/apsci_triage_522442c37908/solver/candidates.json | pass | chrX | GATA1 | latent_mining/biology/tasks/apsci_triage_522442c37908/tb_science/instruction.md | adversarial | true | gata1_chrx | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroid/megakaryocytic, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_522442c37908 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_522442c37908/solver/public_evidence_guide.json | true | hg38 | chrX:48500000-48700000 | biology | regulatory_variant_triage_cached | apsci_triage_522442c37908 | latent_mining/biology/tasks/apsci_triage_522442c37908/solver/task.json | search | true |
CAGE | cage_hela_s3 | prioritize promoter-like edits affecting CAGE TSS regulatory output | HeLa-S3 cervical cancer cell line | 10 | latent_mining/biology/tasks/apsci_triage_52a393b85246/solver/candidates.json | pass | chr5 | TERT | latent_mining/biology/tasks/apsci_triage_52a393b85246/tb_science/instruction.md | adversarial | true | tert_promoter | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in HeLa-S3 cervical cancer cell line, using only public sequence and plausibility features. | EFO:0002791 | true | CAGE | latent_mining/biology/tasks/apsci_triage_52a393b85246 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_52a393b85246/solver/public_evidence_guide.json | true | hg38 | chr5:1100000-1300000 | biology | regulatory_variant_triage_cached | apsci_triage_52a393b85246 | latent_mining/biology/tasks/apsci_triage_52a393b85246/solver/task.json | search | true |
RNA_SEQ | rna_seq_beta_cell | prioritize beta-cell promoter or enhancer edits affecting endocrine RNA-seq regulatory output | type B pancreatic cell | 10 | latent_mining/biology/tasks/apsci_triage_54cd4b6b2284/solver/candidates.json | pass | chr11 | INS | latent_mining/biology/tasks/apsci_triage_54cd4b6b2284/tb_science/instruction.md | adversarial | true | ins_islet | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome RNA_SEQ objective in type B pancreatic cell, using only public sequence and plausibility features. | CL:0000169 | true | RNA_SEQ | latent_mining/biology/tasks/apsci_triage_54cd4b6b2284 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_54cd4b6b2284/solver/public_evidence_guide.json | true | hg38 | chr11:2100000-2300000 | biology | regulatory_variant_triage_cached | apsci_triage_54cd4b6b2284 | latent_mining/biology/tasks/apsci_triage_54cd4b6b2284/solver/task.json | search | true |
ChIP | chip_erythroid_tf | prioritize TF-bound promoter/enhancer edits in erythroid or megakaryocytic context | erythroid/megakaryocytic | 10 | latent_mining/biology/tasks/apsci_triage_55fedb382f5f/solver/candidates.json | pass | chrX | GATA1 | latent_mining/biology/tasks/apsci_triage_55fedb382f5f/tb_science/instruction.md | adversarial | true | gata1_chrx | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroid/megakaryocytic, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_55fedb382f5f | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_55fedb382f5f/solver/public_evidence_guide.json | true | hg38 | chrX:48500000-48700000 | biology | regulatory_variant_triage_cached | apsci_triage_55fedb382f5f | latent_mining/biology/tasks/apsci_triage_55fedb382f5f/solver/task.json | search | true |
ChIP | chip_erythroblast_lcr_tf | prioritize TF-bound locus-control-region enhancer edits in erythroblast regulatory context | erythroblast | 10 | latent_mining/biology/tasks/apsci_triage_5988b4ad6b90/solver/candidates.json | pass | chr11 | HBB/HBE | latent_mining/biology/tasks/apsci_triage_5988b4ad6b90/tb_science/instruction.md | adversarial | true | hbb_lcr | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroblast, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_5988b4ad6b90 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_5988b4ad6b90/solver/public_evidence_guide.json | true | hg38 | chr11:5200000-5300000 | biology | regulatory_variant_triage_cached | apsci_triage_5988b4ad6b90 | latent_mining/biology/tasks/apsci_triage_5988b4ad6b90/solver/task.json | search | true |
ATAC | atac_subcutaneous_adipose | prioritize distal enhancer edits in adipose regulatory context | subcutaneous adipose tissue | 10 | latent_mining/biology/tasks/apsci_triage_5a044d544833/solver/candidates.json | pass | chr16 | FTO/IRX3 | latent_mining/biology/tasks/apsci_triage_5a044d544833/tb_science/instruction.md | adversarial | true | fto_irx3_adipose | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ATAC objective in subcutaneous adipose tissue, using only public sequence and plausibility features. | UBERON:0002190 | true | ATAC | latent_mining/biology/tasks/apsci_triage_5a044d544833 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_5a044d544833/solver/public_evidence_guide.json | true | hg38 | chr16:53700000-53900000 | biology | regulatory_variant_triage_cached | apsci_triage_5a044d544833 | latent_mining/biology/tasks/apsci_triage_5a044d544833/solver/task.json | search | true |
CAGE | cage_hela_s3 | prioritize promoter-like edits affecting CAGE TSS regulatory output | HeLa-S3 cervical cancer cell line | 10 | latent_mining/biology/tasks/apsci_triage_5b0afc0e692c/solver/candidates.json | pass | chr5 | TERT | latent_mining/biology/tasks/apsci_triage_5b0afc0e692c/tb_science/instruction.md | adversarial | true | tert_promoter | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in HeLa-S3 cervical cancer cell line, using only public sequence and plausibility features. | EFO:0002791 | true | CAGE | latent_mining/biology/tasks/apsci_triage_5b0afc0e692c | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_5b0afc0e692c/solver/public_evidence_guide.json | true | hg38 | chr5:1100000-1300000 | biology | regulatory_variant_triage_cached | apsci_triage_5b0afc0e692c | latent_mining/biology/tasks/apsci_triage_5b0afc0e692c/solver/task.json | search | true |
ATAC | atac_subcutaneous_adipose | prioritize distal enhancer edits in adipose regulatory context | subcutaneous adipose tissue | 10 | latent_mining/biology/tasks/apsci_triage_5b47b3875c71/solver/candidates.json | pass | chr16 | FTO/IRX3 | latent_mining/biology/tasks/apsci_triage_5b47b3875c71/tb_science/instruction.md | adversarial | true | fto_irx3_adipose | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ATAC objective in subcutaneous adipose tissue, using only public sequence and plausibility features. | UBERON:0002190 | true | ATAC | latent_mining/biology/tasks/apsci_triage_5b47b3875c71 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_5b47b3875c71/solver/public_evidence_guide.json | true | hg38 | chr16:53700000-53900000 | biology | regulatory_variant_triage_cached | apsci_triage_5b47b3875c71 | latent_mining/biology/tasks/apsci_triage_5b47b3875c71/solver/task.json | search | true |
ChIP | chip_erythroid_tf | prioritize TF-bound promoter/enhancer edits in erythroid or megakaryocytic context | erythroid/megakaryocytic | 10 | latent_mining/biology/tasks/apsci_triage_5bfa03cd7892/solver/candidates.json | pass | chrX | GATA1 | latent_mining/biology/tasks/apsci_triage_5bfa03cd7892/tb_science/instruction.md | adversarial | true | gata1_chrx | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroid/megakaryocytic, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_5bfa03cd7892 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_5bfa03cd7892/solver/public_evidence_guide.json | true | hg38 | chrX:48500000-48700000 | biology | regulatory_variant_triage_cached | apsci_triage_5bfa03cd7892 | latent_mining/biology/tasks/apsci_triage_5bfa03cd7892/solver/task.json | search | true |
RNA_SEQ | rna_seq_airway_epithelial | prioritize airway epithelial promoter or enhancer edits affecting RNA-seq regulatory output | airway epithelial cell | 10 | latent_mining/biology/tasks/apsci_triage_5cecf31038f3/solver/candidates.json | pass | chr7 | CFTR | latent_mining/biology/tasks/apsci_triage_5cecf31038f3/tb_science/instruction.md | adversarial | true | cftr_epithelial | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome RNA_SEQ objective in airway epithelial cell, using only public sequence and plausibility features. | CL:0002368 | true | RNA_SEQ | latent_mining/biology/tasks/apsci_triage_5cecf31038f3 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_5cecf31038f3/solver/public_evidence_guide.json | true | hg38 | chr7:117500000-117700000 | biology | regulatory_variant_triage_cached | apsci_triage_5cecf31038f3 | latent_mining/biology/tasks/apsci_triage_5cecf31038f3/solver/task.json | search | true |
ChIP | chip_erythroid_tf | prioritize TF-bound promoter/enhancer edits in erythroid or megakaryocytic context | erythroid/megakaryocytic | 10 | latent_mining/biology/tasks/apsci_triage_5f4212c744aa/solver/candidates.json | pass | chrX | GATA1 | latent_mining/biology/tasks/apsci_triage_5f4212c744aa/tb_science/instruction.md | adversarial | true | gata1_chrx | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroid/megakaryocytic, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_5f4212c744aa | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_5f4212c744aa/solver/public_evidence_guide.json | true | hg38 | chrX:48500000-48700000 | biology | regulatory_variant_triage_cached | apsci_triage_5f4212c744aa | latent_mining/biology/tasks/apsci_triage_5f4212c744aa/solver/task.json | search | true |
ATAC | atac_subcutaneous_adipose | prioritize distal enhancer edits in adipose regulatory context | subcutaneous adipose tissue | 10 | latent_mining/biology/tasks/apsci_triage_60fe6953f120/solver/candidates.json | pass | chr16 | FTO/IRX3 | latent_mining/biology/tasks/apsci_triage_60fe6953f120/tb_science/instruction.md | adversarial | true | fto_irx3_adipose | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ATAC objective in subcutaneous adipose tissue, using only public sequence and plausibility features. | UBERON:0002190 | true | ATAC | latent_mining/biology/tasks/apsci_triage_60fe6953f120 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_60fe6953f120/solver/public_evidence_guide.json | true | hg38 | chr16:53700000-53900000 | biology | regulatory_variant_triage_cached | apsci_triage_60fe6953f120 | latent_mining/biology/tasks/apsci_triage_60fe6953f120/solver/task.json | search | true |
RNA_SEQ | rna_seq_small_intestine | prioritize intestinal enhancer edits affecting digestive regulatory output | small intestine | 10 | latent_mining/biology/tasks/apsci_triage_61ba96954b68/solver/candidates.json | pass | chr2 | LCT/MCM6 | latent_mining/biology/tasks/apsci_triage_61ba96954b68/tb_science/instruction.md | adversarial | true | lct_mcm6 | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome RNA_SEQ objective in small intestine, using only public sequence and plausibility features. | UBERON:0002108 | true | RNA_SEQ | latent_mining/biology/tasks/apsci_triage_61ba96954b68 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_61ba96954b68/solver/public_evidence_guide.json | true | hg38 | chr2:136600000-136800000 | biology | regulatory_variant_triage_cached | apsci_triage_61ba96954b68 | latent_mining/biology/tasks/apsci_triage_61ba96954b68/solver/task.json | search | true |
CAGE | cage_liver | prioritize promoter or enhancer edits affecting liver regulatory output | liver | 10 | latent_mining/biology/tasks/apsci_triage_63d245aed6fa/solver/candidates.json | pass | chr1 | PCSK9 | latent_mining/biology/tasks/apsci_triage_63d245aed6fa/tb_science/instruction.md | adversarial | true | pcsk9_liver | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in liver, using only public sequence and plausibility features. | UBERON:0002107 | true | CAGE | latent_mining/biology/tasks/apsci_triage_63d245aed6fa | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_63d245aed6fa/solver/public_evidence_guide.json | true | hg38 | chr1:55200000-55400000 | biology | regulatory_variant_triage_cached | apsci_triage_63d245aed6fa | latent_mining/biology/tasks/apsci_triage_63d245aed6fa/solver/task.json | search | true |
RNA_SEQ | rna_seq_airway_epithelial | prioritize airway epithelial promoter or enhancer edits affecting RNA-seq regulatory output | airway epithelial cell | 10 | latent_mining/biology/tasks/apsci_triage_64c15593e086/solver/candidates.json | pass | chr7 | CFTR | latent_mining/biology/tasks/apsci_triage_64c15593e086/tb_science/instruction.md | adversarial | true | cftr_epithelial | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome RNA_SEQ objective in airway epithelial cell, using only public sequence and plausibility features. | CL:0002368 | true | RNA_SEQ | latent_mining/biology/tasks/apsci_triage_64c15593e086 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_64c15593e086/solver/public_evidence_guide.json | true | hg38 | chr7:117500000-117700000 | biology | regulatory_variant_triage_cached | apsci_triage_64c15593e086 | latent_mining/biology/tasks/apsci_triage_64c15593e086/solver/task.json | search | true |
ATAC | atac_tcell | prioritize promoter or enhancer edits in T-cell immune-regulatory context | CD4/T cell | 10 | latent_mining/biology/tasks/apsci_triage_669815584849/solver/candidates.json | pass | chr10 | IL2RA | latent_mining/biology/tasks/apsci_triage_669815584849/tb_science/instruction.md | adversarial | true | il2ra_tcell | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ATAC objective in CD4/T cell, using only public sequence and plausibility features. | CL:0000624 | true | ATAC | latent_mining/biology/tasks/apsci_triage_669815584849 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_669815584849/solver/public_evidence_guide.json | true | hg38 | chr10:6000000-6150000 | biology | regulatory_variant_triage_cached | apsci_triage_669815584849 | latent_mining/biology/tasks/apsci_triage_669815584849/solver/task.json | search | true |
ChIP | chip_erythroblast_lcr_tf | prioritize TF-bound locus-control-region enhancer edits in erythroblast regulatory context | erythroblast | 10 | latent_mining/biology/tasks/apsci_triage_672fd0911af7/solver/candidates.json | pass | chr11 | HBB/HBE | latent_mining/biology/tasks/apsci_triage_672fd0911af7/tb_science/instruction.md | adversarial | true | hbb_lcr | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroblast, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_672fd0911af7 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_672fd0911af7/solver/public_evidence_guide.json | true | hg38 | chr11:5200000-5300000 | biology | regulatory_variant_triage_cached | apsci_triage_672fd0911af7 | latent_mining/biology/tasks/apsci_triage_672fd0911af7/solver/task.json | search | true |
ChIP | chip_histone_a549 | prioritize distal enhancer or super-enhancer edits in oncology regulatory context | A549 lung epithelial cancer cell line | 10 | latent_mining/biology/tasks/apsci_triage_677ee1a9ff10/solver/candidates.json | pass | chr8 | MYC | latent_mining/biology/tasks/apsci_triage_677ee1a9ff10/tb_science/instruction.md | adversarial | true | myc_8q24 | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in A549 lung epithelial cancer cell line, using only public sequence and plausibility features. | EFO:0001086 | true | CHIP_HISTONE | latent_mining/biology/tasks/apsci_triage_677ee1a9ff10 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_677ee1a9ff10/solver/public_evidence_guide.json | true | hg38 | chr8:127800000-128050000 | biology | regulatory_variant_triage_cached | apsci_triage_677ee1a9ff10 | latent_mining/biology/tasks/apsci_triage_677ee1a9ff10/solver/task.json | search | true |
ChIP | chip_histone_a549 | prioritize distal enhancer or super-enhancer edits in oncology regulatory context | A549 lung epithelial cancer cell line | 10 | latent_mining/biology/tasks/apsci_triage_67f360d8a419/solver/candidates.json | pass | chr8 | MYC | latent_mining/biology/tasks/apsci_triage_67f360d8a419/tb_science/instruction.md | adversarial | true | myc_8q24 | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in A549 lung epithelial cancer cell line, using only public sequence and plausibility features. | EFO:0001086 | true | CHIP_HISTONE | latent_mining/biology/tasks/apsci_triage_67f360d8a419 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_67f360d8a419/solver/public_evidence_guide.json | true | hg38 | chr8:127800000-128050000 | biology | regulatory_variant_triage_cached | apsci_triage_67f360d8a419 | latent_mining/biology/tasks/apsci_triage_67f360d8a419/solver/task.json | search | true |
ChIP | chip_erythroblast_lcr_tf | prioritize TF-bound locus-control-region enhancer edits in erythroblast regulatory context | erythroblast | 10 | latent_mining/biology/tasks/apsci_triage_6994ece0c349/solver/candidates.json | pass | chr11 | HBB/HBE | latent_mining/biology/tasks/apsci_triage_6994ece0c349/tb_science/instruction.md | adversarial | true | hbb_lcr | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroblast, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_6994ece0c349 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_6994ece0c349/solver/public_evidence_guide.json | true | hg38 | chr11:5200000-5300000 | biology | regulatory_variant_triage_cached | apsci_triage_6994ece0c349 | latent_mining/biology/tasks/apsci_triage_6994ece0c349/solver/task.json | search | true |
ChIP | chip_erythroblast_tf | prioritize TF-bound enhancer edits affecting erythroid hemoglobin-switching regulatory output | erythroblast | 10 | latent_mining/biology/tasks/apsci_triage_6be3c59b7305/solver/candidates.json | pass | chr2 | BCL11A | latent_mining/biology/tasks/apsci_triage_6be3c59b7305/tb_science/instruction.md | adversarial | true | bcl11a_erythroid | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroblast, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_6be3c59b7305 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_6be3c59b7305/solver/public_evidence_guide.json | true | hg38 | chr2:60500000-60800000 | biology | regulatory_variant_triage_cached | apsci_triage_6be3c59b7305 | latent_mining/biology/tasks/apsci_triage_6be3c59b7305/solver/task.json | search | true |
ATAC | atac_tcell | prioritize promoter or enhancer edits in T-cell immune-regulatory context | CD4/T cell | 10 | latent_mining/biology/tasks/apsci_triage_6dfe412f9a00/solver/candidates.json | pass | chr10 | IL2RA | latent_mining/biology/tasks/apsci_triage_6dfe412f9a00/tb_science/instruction.md | adversarial | true | il2ra_tcell | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ATAC objective in CD4/T cell, using only public sequence and plausibility features. | CL:0000624 | true | ATAC | latent_mining/biology/tasks/apsci_triage_6dfe412f9a00 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_6dfe412f9a00/solver/public_evidence_guide.json | true | hg38 | chr10:6000000-6150000 | biology | regulatory_variant_triage_cached | apsci_triage_6dfe412f9a00 | latent_mining/biology/tasks/apsci_triage_6dfe412f9a00/solver/task.json | search | true |
ATAC | atac_tcell | prioritize promoter or enhancer edits in T-cell immune-regulatory context | CD4/T cell | 10 | latent_mining/biology/tasks/apsci_triage_6f0f22ef839a/solver/candidates.json | pass | chr10 | IL2RA | latent_mining/biology/tasks/apsci_triage_6f0f22ef839a/tb_science/instruction.md | adversarial | true | il2ra_tcell | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ATAC objective in CD4/T cell, using only public sequence and plausibility features. | CL:0000624 | true | ATAC | latent_mining/biology/tasks/apsci_triage_6f0f22ef839a | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_6f0f22ef839a/solver/public_evidence_guide.json | true | hg38 | chr10:6000000-6150000 | biology | regulatory_variant_triage_cached | apsci_triage_6f0f22ef839a | latent_mining/biology/tasks/apsci_triage_6f0f22ef839a/solver/task.json | search | true |
CAGE | cage_hela_s3 | prioritize promoter-like edits affecting CAGE TSS regulatory output | HeLa-S3 cervical cancer cell line | 10 | latent_mining/biology/tasks/apsci_triage_712407843d8e/solver/candidates.json | pass | chr5 | TERT | latent_mining/biology/tasks/apsci_triage_712407843d8e/tb_science/instruction.md | adversarial | true | tert_promoter | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in HeLa-S3 cervical cancer cell line, using only public sequence and plausibility features. | EFO:0002791 | true | CAGE | latent_mining/biology/tasks/apsci_triage_712407843d8e | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_712407843d8e/solver/public_evidence_guide.json | true | hg38 | chr5:1100000-1300000 | biology | regulatory_variant_triage_cached | apsci_triage_712407843d8e | latent_mining/biology/tasks/apsci_triage_712407843d8e/solver/task.json | search | true |
ChIP | chip_erythroblast_tf | prioritize TF-bound enhancer edits affecting erythroid hemoglobin-switching regulatory output | erythroblast | 10 | latent_mining/biology/tasks/apsci_triage_71b26455aaa5/solver/candidates.json | pass | chr2 | BCL11A | latent_mining/biology/tasks/apsci_triage_71b26455aaa5/tb_science/instruction.md | adversarial | true | bcl11a_erythroid | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroblast, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_71b26455aaa5 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_71b26455aaa5/solver/public_evidence_guide.json | true | hg38 | chr2:60500000-60800000 | biology | regulatory_variant_triage_cached | apsci_triage_71b26455aaa5 | latent_mining/biology/tasks/apsci_triage_71b26455aaa5/solver/task.json | search | true |
ChIP | chip_erythroblast_tf | prioritize TF-bound enhancer edits affecting erythroid hemoglobin-switching regulatory output | erythroblast | 10 | latent_mining/biology/tasks/apsci_triage_7447356d00d4/solver/candidates.json | pass | chr2 | BCL11A | latent_mining/biology/tasks/apsci_triage_7447356d00d4/tb_science/instruction.md | adversarial | true | bcl11a_erythroid | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroblast, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_7447356d00d4 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_7447356d00d4/solver/public_evidence_guide.json | true | hg38 | chr2:60500000-60800000 | biology | regulatory_variant_triage_cached | apsci_triage_7447356d00d4 | latent_mining/biology/tasks/apsci_triage_7447356d00d4/solver/task.json | search | true |
RNA_SEQ | rna_seq_beta_cell | prioritize beta-cell promoter or enhancer edits affecting endocrine RNA-seq regulatory output | type B pancreatic cell | 10 | latent_mining/biology/tasks/apsci_triage_751d40e40846/solver/candidates.json | pass | chr11 | INS | latent_mining/biology/tasks/apsci_triage_751d40e40846/tb_science/instruction.md | adversarial | true | ins_islet | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome RNA_SEQ objective in type B pancreatic cell, using only public sequence and plausibility features. | CL:0000169 | true | RNA_SEQ | latent_mining/biology/tasks/apsci_triage_751d40e40846 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_751d40e40846/solver/public_evidence_guide.json | true | hg38 | chr11:2100000-2300000 | biology | regulatory_variant_triage_cached | apsci_triage_751d40e40846 | latent_mining/biology/tasks/apsci_triage_751d40e40846/solver/task.json | search | true |
RNA_SEQ | rna_seq_beta_cell | prioritize beta-cell promoter or enhancer edits affecting endocrine RNA-seq regulatory output | type B pancreatic cell | 10 | latent_mining/biology/tasks/apsci_triage_753269be06d4/solver/candidates.json | pass | chr11 | INS | latent_mining/biology/tasks/apsci_triage_753269be06d4/tb_science/instruction.md | adversarial | true | ins_islet | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome RNA_SEQ objective in type B pancreatic cell, using only public sequence and plausibility features. | CL:0000169 | true | RNA_SEQ | latent_mining/biology/tasks/apsci_triage_753269be06d4 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_753269be06d4/solver/public_evidence_guide.json | true | hg38 | chr11:2100000-2300000 | biology | regulatory_variant_triage_cached | apsci_triage_753269be06d4 | latent_mining/biology/tasks/apsci_triage_753269be06d4/solver/task.json | search | true |
CAGE | cage_hela_s3 | prioritize promoter-like edits affecting CAGE TSS regulatory output | HeLa-S3 cervical cancer cell line | 10 | latent_mining/biology/tasks/apsci_triage_7a491161d042/solver/candidates.json | pass | chr5 | TERT | latent_mining/biology/tasks/apsci_triage_7a491161d042/tb_science/instruction.md | adversarial | true | tert_promoter | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in HeLa-S3 cervical cancer cell line, using only public sequence and plausibility features. | EFO:0002791 | true | CAGE | latent_mining/biology/tasks/apsci_triage_7a491161d042 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_7a491161d042/solver/public_evidence_guide.json | true | hg38 | chr5:1100000-1300000 | biology | regulatory_variant_triage_cached | apsci_triage_7a491161d042 | latent_mining/biology/tasks/apsci_triage_7a491161d042/solver/task.json | search | true |
ATAC | atac_tcell | prioritize promoter or enhancer edits in T-cell immune-regulatory context | CD4/T cell | 10 | latent_mining/biology/tasks/apsci_triage_7b050ae3e9c1/solver/candidates.json | pass | chr10 | IL2RA | latent_mining/biology/tasks/apsci_triage_7b050ae3e9c1/tb_science/instruction.md | adversarial | true | il2ra_tcell | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ATAC objective in CD4/T cell, using only public sequence and plausibility features. | CL:0000624 | true | ATAC | latent_mining/biology/tasks/apsci_triage_7b050ae3e9c1 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_7b050ae3e9c1/solver/public_evidence_guide.json | true | hg38 | chr10:6000000-6150000 | biology | regulatory_variant_triage_cached | apsci_triage_7b050ae3e9c1 | latent_mining/biology/tasks/apsci_triage_7b050ae3e9c1/solver/task.json | search | true |
ChIP | chip_erythroid_tf | prioritize TF-bound promoter/enhancer edits in erythroid or megakaryocytic context | erythroid/megakaryocytic | 10 | latent_mining/biology/tasks/apsci_triage_7c6cc1542eb4/solver/candidates.json | pass | chrX | GATA1 | latent_mining/biology/tasks/apsci_triage_7c6cc1542eb4/tb_science/instruction.md | adversarial | true | gata1_chrx | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroid/megakaryocytic, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_7c6cc1542eb4 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_7c6cc1542eb4/solver/public_evidence_guide.json | true | hg38 | chrX:48500000-48700000 | biology | regulatory_variant_triage_cached | apsci_triage_7c6cc1542eb4 | latent_mining/biology/tasks/apsci_triage_7c6cc1542eb4/solver/task.json | search | true |
ATAC | atac_tcell | prioritize promoter or enhancer edits in T-cell immune-regulatory context | CD4/T cell | 10 | latent_mining/biology/tasks/apsci_triage_7e50f73fab90/solver/candidates.json | pass | chr10 | IL2RA | latent_mining/biology/tasks/apsci_triage_7e50f73fab90/tb_science/instruction.md | adversarial | true | il2ra_tcell | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ATAC objective in CD4/T cell, using only public sequence and plausibility features. | CL:0000624 | true | ATAC | latent_mining/biology/tasks/apsci_triage_7e50f73fab90 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_7e50f73fab90/solver/public_evidence_guide.json | true | hg38 | chr10:6000000-6150000 | biology | regulatory_variant_triage_cached | apsci_triage_7e50f73fab90 | latent_mining/biology/tasks/apsci_triage_7e50f73fab90/solver/task.json | search | true |
ATAC | atac_subcutaneous_adipose | prioritize distal enhancer edits in adipose regulatory context | subcutaneous adipose tissue | 10 | latent_mining/biology/tasks/apsci_triage_8242ae5aa3e7/solver/candidates.json | pass | chr16 | FTO/IRX3 | latent_mining/biology/tasks/apsci_triage_8242ae5aa3e7/tb_science/instruction.md | adversarial | true | fto_irx3_adipose | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ATAC objective in subcutaneous adipose tissue, using only public sequence and plausibility features. | UBERON:0002190 | true | ATAC | latent_mining/biology/tasks/apsci_triage_8242ae5aa3e7 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_8242ae5aa3e7/solver/public_evidence_guide.json | true | hg38 | chr16:53700000-53900000 | biology | regulatory_variant_triage_cached | apsci_triage_8242ae5aa3e7 | latent_mining/biology/tasks/apsci_triage_8242ae5aa3e7/solver/task.json | search | true |
ChIP | chip_erythroid_tf | prioritize TF-bound promoter/enhancer edits in erythroid or megakaryocytic context | erythroid/megakaryocytic | 10 | latent_mining/biology/tasks/apsci_triage_82c170de1abe/solver/candidates.json | pass | chrX | GATA1 | latent_mining/biology/tasks/apsci_triage_82c170de1abe/tb_science/instruction.md | adversarial | true | gata1_chrx | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroid/megakaryocytic, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_82c170de1abe | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_82c170de1abe/solver/public_evidence_guide.json | true | hg38 | chrX:48500000-48700000 | biology | regulatory_variant_triage_cached | apsci_triage_82c170de1abe | latent_mining/biology/tasks/apsci_triage_82c170de1abe/solver/task.json | search | true |
ChIP | chip_erythroid_tf | prioritize TF-bound promoter/enhancer edits in erythroid or megakaryocytic context | erythroid/megakaryocytic | 10 | latent_mining/biology/tasks/apsci_triage_83944e549863/solver/candidates.json | pass | chrX | GATA1 | latent_mining/biology/tasks/apsci_triage_83944e549863/tb_science/instruction.md | adversarial | true | gata1_chrx | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroid/megakaryocytic, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_83944e549863 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_83944e549863/solver/public_evidence_guide.json | true | hg38 | chrX:48500000-48700000 | biology | regulatory_variant_triage_cached | apsci_triage_83944e549863 | latent_mining/biology/tasks/apsci_triage_83944e549863/solver/task.json | search | true |
CAGE | cage_hela_s3 | prioritize promoter-like edits affecting CAGE TSS regulatory output | HeLa-S3 cervical cancer cell line | 10 | latent_mining/biology/tasks/apsci_triage_83c243a8b41a/solver/candidates.json | pass | chr5 | TERT | latent_mining/biology/tasks/apsci_triage_83c243a8b41a/tb_science/instruction.md | adversarial | true | tert_promoter | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in HeLa-S3 cervical cancer cell line, using only public sequence and plausibility features. | EFO:0002791 | true | CAGE | latent_mining/biology/tasks/apsci_triage_83c243a8b41a | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_83c243a8b41a/solver/public_evidence_guide.json | true | hg38 | chr5:1100000-1300000 | biology | regulatory_variant_triage_cached | apsci_triage_83c243a8b41a | latent_mining/biology/tasks/apsci_triage_83c243a8b41a/solver/task.json | search | true |
RNA_SEQ | rna_seq_airway_epithelial | prioritize airway epithelial promoter or enhancer edits affecting RNA-seq regulatory output | airway epithelial cell | 10 | latent_mining/biology/tasks/apsci_triage_88d6a836d277/solver/candidates.json | pass | chr7 | CFTR | latent_mining/biology/tasks/apsci_triage_88d6a836d277/tb_science/instruction.md | adversarial | true | cftr_epithelial | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome RNA_SEQ objective in airway epithelial cell, using only public sequence and plausibility features. | CL:0002368 | true | RNA_SEQ | latent_mining/biology/tasks/apsci_triage_88d6a836d277 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_88d6a836d277/solver/public_evidence_guide.json | true | hg38 | chr7:117500000-117700000 | biology | regulatory_variant_triage_cached | apsci_triage_88d6a836d277 | latent_mining/biology/tasks/apsci_triage_88d6a836d277/solver/task.json | search | true |
ATAC | atac_subcutaneous_adipose | prioritize distal enhancer edits in adipose regulatory context | subcutaneous adipose tissue | 10 | latent_mining/biology/tasks/apsci_triage_8a8f3bae3875/solver/candidates.json | pass | chr16 | FTO/IRX3 | latent_mining/biology/tasks/apsci_triage_8a8f3bae3875/tb_science/instruction.md | adversarial | true | fto_irx3_adipose | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ATAC objective in subcutaneous adipose tissue, using only public sequence and plausibility features. | UBERON:0002190 | true | ATAC | latent_mining/biology/tasks/apsci_triage_8a8f3bae3875 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_8a8f3bae3875/solver/public_evidence_guide.json | true | hg38 | chr16:53700000-53900000 | biology | regulatory_variant_triage_cached | apsci_triage_8a8f3bae3875 | latent_mining/biology/tasks/apsci_triage_8a8f3bae3875/solver/task.json | search | true |
CAGE | cage_hela_s3 | prioritize promoter-like edits affecting CAGE TSS regulatory output | HeLa-S3 cervical cancer cell line | 10 | latent_mining/biology/tasks/apsci_triage_8b2931dc8baf/solver/candidates.json | pass | chr5 | TERT | latent_mining/biology/tasks/apsci_triage_8b2931dc8baf/tb_science/instruction.md | adversarial | true | tert_promoter | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in HeLa-S3 cervical cancer cell line, using only public sequence and plausibility features. | EFO:0002791 | true | CAGE | latent_mining/biology/tasks/apsci_triage_8b2931dc8baf | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_8b2931dc8baf/solver/public_evidence_guide.json | true | hg38 | chr5:1100000-1300000 | biology | regulatory_variant_triage_cached | apsci_triage_8b2931dc8baf | latent_mining/biology/tasks/apsci_triage_8b2931dc8baf/solver/task.json | search | true |
ChIP | chip_erythroid_tf | prioritize TF-bound promoter/enhancer edits in erythroid or megakaryocytic context | erythroid/megakaryocytic | 10 | latent_mining/biology/tasks/apsci_triage_8daa4f05b060/solver/candidates.json | pass | chrX | GATA1 | latent_mining/biology/tasks/apsci_triage_8daa4f05b060/tb_science/instruction.md | adversarial | true | gata1_chrx | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroid/megakaryocytic, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_8daa4f05b060 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_8daa4f05b060/solver/public_evidence_guide.json | true | hg38 | chrX:48500000-48700000 | biology | regulatory_variant_triage_cached | apsci_triage_8daa4f05b060 | latent_mining/biology/tasks/apsci_triage_8daa4f05b060/solver/task.json | search | true |
CAGE | cage_liver | prioritize promoter or enhancer edits affecting liver regulatory output | liver | 10 | latent_mining/biology/tasks/apsci_triage_8fc6f2128dce/solver/candidates.json | pass | chr1 | PCSK9 | latent_mining/biology/tasks/apsci_triage_8fc6f2128dce/tb_science/instruction.md | adversarial | true | pcsk9_liver | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in liver, using only public sequence and plausibility features. | UBERON:0002107 | true | CAGE | latent_mining/biology/tasks/apsci_triage_8fc6f2128dce | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_8fc6f2128dce/solver/public_evidence_guide.json | true | hg38 | chr1:55200000-55400000 | biology | regulatory_variant_triage_cached | apsci_triage_8fc6f2128dce | latent_mining/biology/tasks/apsci_triage_8fc6f2128dce/solver/task.json | search | true |
ChIP | chip_erythroid_tf | prioritize TF-bound promoter/enhancer edits in erythroid or megakaryocytic context | erythroid/megakaryocytic | 10 | latent_mining/biology/tasks/apsci_triage_925ce5e82bbb/solver/candidates.json | pass | chrX | GATA1 | latent_mining/biology/tasks/apsci_triage_925ce5e82bbb/tb_science/instruction.md | adversarial | true | gata1_chrx | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroid/megakaryocytic, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_925ce5e82bbb | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_925ce5e82bbb/solver/public_evidence_guide.json | true | hg38 | chrX:48500000-48700000 | biology | regulatory_variant_triage_cached | apsci_triage_925ce5e82bbb | latent_mining/biology/tasks/apsci_triage_925ce5e82bbb/solver/task.json | search | true |
ChIP | chip_erythroblast_lcr_tf | prioritize TF-bound locus-control-region enhancer edits in erythroblast regulatory context | erythroblast | 10 | latent_mining/biology/tasks/apsci_triage_92a854646c6a/solver/candidates.json | pass | chr11 | HBB/HBE | latent_mining/biology/tasks/apsci_triage_92a854646c6a/tb_science/instruction.md | adversarial | true | hbb_lcr | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ChIP objective in erythroblast, using only public sequence and plausibility features. | CL:0000765 | true | CHIP_TF | latent_mining/biology/tasks/apsci_triage_92a854646c6a | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_92a854646c6a/solver/public_evidence_guide.json | true | hg38 | chr11:5200000-5300000 | biology | regulatory_variant_triage_cached | apsci_triage_92a854646c6a | latent_mining/biology/tasks/apsci_triage_92a854646c6a/solver/task.json | search | true |
CAGE | cage_liver | prioritize promoter or enhancer edits affecting liver regulatory output | liver | 10 | latent_mining/biology/tasks/apsci_triage_97594e028b2e/solver/candidates.json | pass | chr1 | PCSK9 | latent_mining/biology/tasks/apsci_triage_97594e028b2e/tb_science/instruction.md | adversarial | true | pcsk9_liver | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in liver, using only public sequence and plausibility features. | UBERON:0002107 | true | CAGE | latent_mining/biology/tasks/apsci_triage_97594e028b2e | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_97594e028b2e/solver/public_evidence_guide.json | true | hg38 | chr1:55200000-55400000 | biology | regulatory_variant_triage_cached | apsci_triage_97594e028b2e | latent_mining/biology/tasks/apsci_triage_97594e028b2e/solver/task.json | search | true |
CAGE | cage_liver | prioritize promoter or enhancer edits affecting liver regulatory output | liver | 10 | latent_mining/biology/tasks/apsci_triage_981ea9136d6f/solver/candidates.json | pass | chr1 | PCSK9 | latent_mining/biology/tasks/apsci_triage_981ea9136d6f/tb_science/instruction.md | adversarial | true | pcsk9_liver | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in liver, using only public sequence and plausibility features. | UBERON:0002107 | true | CAGE | latent_mining/biology/tasks/apsci_triage_981ea9136d6f | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_981ea9136d6f/solver/public_evidence_guide.json | true | hg38 | chr1:55200000-55400000 | biology | regulatory_variant_triage_cached | apsci_triage_981ea9136d6f | latent_mining/biology/tasks/apsci_triage_981ea9136d6f/solver/task.json | search | true |
RNA_SEQ | rna_seq_small_intestine | prioritize intestinal enhancer edits affecting digestive regulatory output | small intestine | 10 | latent_mining/biology/tasks/apsci_triage_99cf28e5fecf/solver/candidates.json | pass | chr2 | LCT/MCM6 | latent_mining/biology/tasks/apsci_triage_99cf28e5fecf/tb_science/instruction.md | adversarial | true | lct_mcm6 | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome RNA_SEQ objective in small intestine, using only public sequence and plausibility features. | UBERON:0002108 | true | RNA_SEQ | latent_mining/biology/tasks/apsci_triage_99cf28e5fecf | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_99cf28e5fecf/solver/public_evidence_guide.json | true | hg38 | chr2:136600000-136800000 | biology | regulatory_variant_triage_cached | apsci_triage_99cf28e5fecf | latent_mining/biology/tasks/apsci_triage_99cf28e5fecf/solver/task.json | search | true |
ATAC | atac_tcell | prioritize promoter or enhancer edits in T-cell immune-regulatory context | CD4/T cell | 10 | latent_mining/biology/tasks/apsci_triage_9d949de88434/solver/candidates.json | pass | chr10 | IL2RA | latent_mining/biology/tasks/apsci_triage_9d949de88434/tb_science/instruction.md | adversarial | true | il2ra_tcell | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ATAC objective in CD4/T cell, using only public sequence and plausibility features. | CL:0000624 | true | ATAC | latent_mining/biology/tasks/apsci_triage_9d949de88434 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_9d949de88434/solver/public_evidence_guide.json | true | hg38 | chr10:6000000-6150000 | biology | regulatory_variant_triage_cached | apsci_triage_9d949de88434 | latent_mining/biology/tasks/apsci_triage_9d949de88434/solver/task.json | search | true |
CAGE | cage_hela_s3 | prioritize promoter-like edits affecting CAGE TSS regulatory output | HeLa-S3 cervical cancer cell line | 10 | latent_mining/biology/tasks/apsci_triage_9f08b4cb23f9/solver/candidates.json | pass | chr5 | TERT | latent_mining/biology/tasks/apsci_triage_9f08b4cb23f9/tb_science/instruction.md | adversarial | true | tert_promoter | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in HeLa-S3 cervical cancer cell line, using only public sequence and plausibility features. | EFO:0002791 | true | CAGE | latent_mining/biology/tasks/apsci_triage_9f08b4cb23f9 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_9f08b4cb23f9/solver/public_evidence_guide.json | true | hg38 | chr5:1100000-1300000 | biology | regulatory_variant_triage_cached | apsci_triage_9f08b4cb23f9 | latent_mining/biology/tasks/apsci_triage_9f08b4cb23f9/solver/task.json | search | true |
RNA_SEQ | rna_seq_beta_cell | prioritize beta-cell promoter or enhancer edits affecting endocrine RNA-seq regulatory output | type B pancreatic cell | 10 | latent_mining/biology/tasks/apsci_triage_a15bfa620002/solver/candidates.json | pass | chr11 | INS | latent_mining/biology/tasks/apsci_triage_a15bfa620002/tb_science/instruction.md | adversarial | true | ins_islet | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome RNA_SEQ objective in type B pancreatic cell, using only public sequence and plausibility features. | CL:0000169 | true | RNA_SEQ | latent_mining/biology/tasks/apsci_triage_a15bfa620002 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_a15bfa620002/solver/public_evidence_guide.json | true | hg38 | chr11:2100000-2300000 | biology | regulatory_variant_triage_cached | apsci_triage_a15bfa620002 | latent_mining/biology/tasks/apsci_triage_a15bfa620002/solver/task.json | search | true |
ATAC | atac_subcutaneous_adipose | prioritize distal enhancer edits in adipose regulatory context | subcutaneous adipose tissue | 10 | latent_mining/biology/tasks/apsci_triage_a1bce0a7f0d9/solver/candidates.json | pass | chr16 | FTO/IRX3 | latent_mining/biology/tasks/apsci_triage_a1bce0a7f0d9/tb_science/instruction.md | adversarial | true | fto_irx3_adipose | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome ATAC objective in subcutaneous adipose tissue, using only public sequence and plausibility features. | UBERON:0002190 | true | ATAC | latent_mining/biology/tasks/apsci_triage_a1bce0a7f0d9 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_a1bce0a7f0d9/solver/public_evidence_guide.json | true | hg38 | chr16:53700000-53900000 | biology | regulatory_variant_triage_cached | apsci_triage_a1bce0a7f0d9 | latent_mining/biology/tasks/apsci_triage_a1bce0a7f0d9/solver/task.json | search | true |
CAGE | cage_liver | prioritize promoter or enhancer edits affecting liver regulatory output | liver | 10 | latent_mining/biology/tasks/apsci_triage_a20754c63049/solver/candidates.json | pass | chr1 | PCSK9 | latent_mining/biology/tasks/apsci_triage_a20754c63049/tb_science/instruction.md | adversarial | true | pcsk9_liver | Select the candidate edit most likely to satisfy the hidden cached AlphaGenome CAGE objective in liver, using only public sequence and plausibility features. | UBERON:0002107 | true | CAGE | latent_mining/biology/tasks/apsci_triage_a20754c63049 | true | edit action type; local reference and alternate sequence context; Carbon reference and alternate mean log probability; Carbon delta mean log probability; GC fraction shift; homopolymer shift; PWM/motif disruption or creation over public local contexts; Carbon edit-site surprisal window when per-token cache is present; ... | latent_mining/biology/tasks/apsci_triage_a20754c63049/solver/public_evidence_guide.json | true | hg38 | chr1:55200000-55400000 | biology | regulatory_variant_triage_cached | apsci_triage_a20754c63049 | latent_mining/biology/tasks/apsci_triage_a20754c63049/solver/task.json | search | true |
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