sync-o2-partial-artifacts

.gitattributes

@@ -59,3 +59,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.mp4 filter=lfs diff=lfs merge=lfs -text
 *.webm filter=lfs diff=lfs merge=lfs -text
 experiments/O1_baseline/2026-06-09_xgb2_full_bs64/artifact/report/O1_baseline_report.pdf filter=lfs diff=lfs merge=lfs -text
+experiments/O2_data_efficiency/2026-06-09_xgb2_partial_EAC80/artifact/report/O2_data_efficiency_report.pdf filter=lfs diff=lfs merge=lfs -text

experiments/O2_data_efficiency/2026-06-09_xgb2_partial_EAC80/artifact/compiled/o2_data_efficiency_metrics.csv

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experiments/O2_data_efficiency/2026-06-09_xgb2_partial_EAC80/artifact/compiled/o2_data_efficiency_metrics.json

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experiments/O2_data_efficiency/2026-06-09_xgb2_partial_EAC80/artifact/logs/o2_gpu0_bilstm.log

@@ -0,0 +1,13 @@
+
+=== O2 queue start: BiLSTM E-AC80 ===
+BiLSTM E-AC80 epoch 001/50 train_mse=0.184514 val_mse=0.094526 val_r2=0.8806 peak=15.61GB
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+BiLSTM E-AC80 epoch 007/50 train_mse=0.030899 val_mse=0.027043 val_r2=0.9658 peak=15.61GB
+BiLSTM E-AC80 epoch 008/50 train_mse=0.026124 val_mse=0.023634 val_r2=0.9702 peak=15.61GB
+BiLSTM E-AC80 epoch 009/50 train_mse=0.024447 val_mse=0.020375 val_r2=0.9743 peak=15.61GB
+BiLSTM E-AC80 epoch 010/50 train_mse=0.021730 val_mse=0.024054 val_r2=0.9696 peak=15.61GB
+BiLSTM E-AC80 epoch 011/50 train_mse=0.021081 val_mse=0.022259 val_r2=0.9719 peak=15.61GB

experiments/O2_data_efficiency/2026-06-09_xgb2_partial_EAC80/artifact/logs/o2_gpu1_fno_transformer.log

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+
+=== O2 queue start: FNO-Large E-AC80 ===
+FNO-Large E-AC80 epoch 001/50 train_mse=0.121265 val_mse=0.085454 val_r2=0.8921 peak=3.30GB
+FNO-Large E-AC80 epoch 002/50 train_mse=0.059299 val_mse=0.073123 val_r2=0.9076 peak=3.30GB
+FNO-Large E-AC80 epoch 003/50 train_mse=0.046376 val_mse=0.064540 val_r2=0.9185 peak=3.30GB
+FNO-Large E-AC80 epoch 004/50 train_mse=0.040007 val_mse=0.058650 val_r2=0.9259 peak=3.30GB
+FNO-Large E-AC80 epoch 005/50 train_mse=0.036330 val_mse=0.054976 val_r2=0.9306 peak=3.30GB
+FNO-Large E-AC80 epoch 006/50 train_mse=0.032305 val_mse=0.054311 val_r2=0.9314 peak=3.30GB
+FNO-Large E-AC80 epoch 007/50 train_mse=0.030493 val_mse=0.055501 val_r2=0.9299 peak=3.30GB
+FNO-Large E-AC80 epoch 008/50 train_mse=0.029097 val_mse=0.050662 val_r2=0.9360 peak=3.30GB
+FNO-Large E-AC80 epoch 009/50 train_mse=0.027164 val_mse=0.050450 val_r2=0.9363 peak=3.30GB
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+FNO-Large E-AC80 epoch 012/50 train_mse=0.024458 val_mse=0.052032 val_r2=0.9343 peak=3.30GB
+FNO-Large E-AC80 epoch 013/50 train_mse=0.023643 val_mse=0.048264 val_r2=0.9390 peak=3.30GB
+FNO-Large E-AC80 epoch 014/50 train_mse=0.023520 val_mse=0.048628 val_r2=0.9386 peak=3.30GB
+FNO-Large E-AC80 epoch 015/50 train_mse=0.022679 val_mse=0.049527 val_r2=0.9374 peak=3.30GB
+FNO-Large E-AC80 epoch 016/50 train_mse=0.022033 val_mse=0.049063 val_r2=0.9380 peak=3.30GB
+FNO-Large E-AC80 epoch 017/50 train_mse=0.021457 val_mse=0.047159 val_r2=0.9404 peak=3.30GB
+FNO-Large E-AC80 epoch 018/50 train_mse=0.021117 val_mse=0.048310 val_r2=0.9390 peak=3.30GB
+FNO-Large E-AC80 epoch 019/50 train_mse=0.020792 val_mse=0.047705 val_r2=0.9398 peak=3.30GB
+FNO-Large E-AC80 epoch 020/50 train_mse=0.020154 val_mse=0.047837 val_r2=0.9396 peak=3.30GB
+FNO-Large E-AC80 epoch 021/50 train_mse=0.016622 val_mse=0.046132 val_r2=0.9417 peak=3.30GB
+FNO-Large E-AC80 epoch 022/50 train_mse=0.016008 val_mse=0.047560 val_r2=0.9399 peak=3.30GB
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+FNO-Large E-AC80 epoch 027/50 train_mse=0.015193 val_mse=0.047117 val_r2=0.9405 peak=3.30GB
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+FNO-Large E-AC80 epoch 029/50 train_mse=0.014601 val_mse=0.046547 val_r2=0.9412 peak=3.30GB
+FNO-Large E-AC80 epoch 030/50 train_mse=0.014563 val_mse=0.047840 val_r2=0.9396 peak=3.30GB
+FNO-Large E-AC80 epoch 031/50 train_mse=0.014507 val_mse=0.046321 val_r2=0.9415 peak=3.30GB
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+FNO-Large E-AC80 epoch 033/50 train_mse=0.014147 val_mse=0.046901 val_r2=0.9408 peak=3.30GB
+FNO-Large E-AC80 epoch 034/50 train_mse=0.014076 val_mse=0.048018 val_r2=0.9394 peak=3.30GB
+FNO-Large E-AC80 epoch 035/50 train_mse=0.014131 val_mse=0.048091 val_r2=0.9393 peak=3.30GB
+FNO-Large E-AC80 epoch 036/50 train_mse=0.013998 val_mse=0.047685 val_r2=0.9398 peak=3.30GB
+FNO-Large E-AC80 epoch 037/50 train_mse=0.013801 val_mse=0.046387 val_r2=0.9414 peak=3.30GB

experiments/O2_data_efficiency/2026-06-09_xgb2_partial_EAC80/artifact/logs/o2_postprocess_after_training.log

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+Waiting for O2 training queues: GPU0=3914712 GPU1=3914516
+2026-06-05 10:36:13 still waiting for O2 queues...
+2026-06-05 11:06:13 still waiting for O2 queues...
+2026-06-05 11:36:13 still waiting for O2 queues...
+O2 training queues finished. Collecting results...
+Wrote 6-code/O2-data-efficiency/results/compiled/o2_data_efficiency_metrics.csv
+Generating O2 report...
+/data/home/jason/Seismic-FNO/6-code/O2-data-efficiency/scripts/generate_o2_report.py:147: UserWarning: No artists with labels found to put in legend.  Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
+  axs[-1].legend(frameon=False, fontsize=9)
+/data/home/jason/Seismic-FNO/6-code/O2-data-efficiency/scripts/generate_o2_report.py:210: UserWarning: This figure includes Axes that are not compatible with tight_layout, so results might be incorrect.
+  fig.tight_layout()
+/data/home/jason/Seismic-FNO/6-code/O2-data-efficiency/scripts/generate_o2_report.py:232: UserWarning: No artists with labels found to put in legend.  Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
+  axs[-1].legend(frameon=False, fontsize=9)
+Wrote O2 report to /data/home/jason/Seismic-FNO/6-code/O2-data-efficiency/results/report
+O2 postprocess complete.

experiments/O2_data_efficiency/2026-06-09_xgb2_partial_EAC80/artifact/report/O2_data_efficiency_report.md

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+# O2 Data Efficiency Report
+
+Generated: 2026-06-05 12:06:15
+
+## Protocol
+
+The O2 study keeps the fixed 474-GM test set from O1 unchanged and prunes only the supervised train/validation pool. FNO-Large, Transformer, and BiLSTM are trained with the O1-final hyperparameters. E-Base is imported from O1 full-data results.
+
+## Key Conclusions
+
+- FNO-Large: E-Base MSE=0.0449, R2=0.9423; reduced runs pending.
+- Transformer: E-Base MSE=0.0214, R2=0.9725; reduced runs pending.
+- BiLSTM: E-Base MSE=0.0099, R2=0.9872; reduced runs pending.
+
+## Figures
+
+![Test MSE degradation](figures/fig1_mse_degradation.png)
+
+![R2 retention](figures/fig2_r2_retention.png)
+
+![Retention heatmap](figures/fig3_retention_heatmap.png)
+
+![Training curves](figures/fig4_training_curves.png)
+
+![Results table](figures/fig5_results_table.png)
+
+## Quantitative Table
+
+|Model|Run|Axis|GMs|ACs|Pool|MSE|R2|PFA RMSE|R2 Ret.|Time(h)|GPU(GB)|
+|---|---|---|---|---|---|---|---|---|---|---|---|
+|FNO-Large|E-Base|full|3000|57|171.0k|0.0449|0.9423|0.0330|1.0000|2.16|3.30|
+|Transformer|E-Base|full|3000|57|171.0k|0.0214|0.9725|0.0231|1.0000|2.34|2.54|
+|BiLSTM|E-Base|full|3000|57|171.0k|0.0099|0.9872|0.0182|1.0000|7.51|15.61|

experiments/O2_data_efficiency/2026-06-09_xgb2_partial_EAC80/artifact/report/O2_data_efficiency_report.pdf

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experiments/O2_data_efficiency/2026-06-09_xgb2_partial_EAC80/artifact/report/O2_data_efficiency_report.tex

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+\documentclass[11pt]{article}
+\usepackage[margin=1in]{geometry}
+\usepackage{graphicx}
+\usepackage{booktabs}
+\usepackage{float}
+\title{O2 Data Efficiency Report}
+\author{Seismic-FNO Experiments}
+\date{2026-06-05}
+\begin{document}
+\maketitle
+
+\section*{Protocol}
+The O2 study keeps the fixed 474-GM test set from O1 unchanged and prunes only
+the supervised train/validation pool. FNO-Large, Transformer, and BiLSTM are
+trained with the O1-final hyperparameters. E-Base is imported from O1 full-data
+results.
+
+\section*{Key Conclusions}
+\begin{itemize}
+\item FNO-Large: E-Base MSE=0.0449, R2=0.9423; reduced runs pending.
+\item Transformer: E-Base MSE=0.0214, R2=0.9725; reduced runs pending.
+\item BiLSTM: E-Base MSE=0.0099, R2=0.9872; reduced runs pending.
+\end{itemize}
+
+\section*{Figures}
+\begin{figure}[H]\centering\includegraphics[width=\linewidth]{figures/fig1_mse_degradation.png}\caption{Test MSE degradation.}\end{figure}
+\begin{figure}[H]\centering\includegraphics[width=\linewidth]{figures/fig2_r2_retention.png}\caption{R2 retention relative to each model's E-Base.}\end{figure}
+\begin{figure}[H]\centering\includegraphics[width=\linewidth]{figures/fig3_retention_heatmap.png}\caption{Retention heatmap over GM and AC budgets.}\end{figure}
+\begin{figure}[H]\centering\includegraphics[width=\linewidth]{figures/fig4_training_curves.png}\caption{Representative validation curves.}\end{figure}
+
+\section*{Quantitative Table}
+\small
+\begin{tabular}{llrrrrrr}
+\toprule
+Model & Run & GMs & ACs & Pool & MSE & $R^2$ & $R^2$ Ret. \\
+\midrule
+FNO-Large & E-Base & 3000 & 57 & 171.0k & 0.0449 & 0.9423 & 1.0000 \\
+Transformer & E-Base & 3000 & 57 & 171.0k & 0.0214 & 0.9725 & 1.0000 \\
+BiLSTM & E-Base & 3000 & 57 & 171.0k & 0.0099 & 0.9872 & 1.0000 \\
+\bottomrule
+\end{tabular}
+\end{document}

experiments/O2_data_efficiency/2026-06-09_xgb2_partial_EAC80/artifact/report/o2_report_conclusions.json

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+[
+  "FNO-Large: E-Base MSE=0.0449, R2=0.9423; reduced runs pending.",
+  "Transformer: E-Base MSE=0.0214, R2=0.9725; reduced runs pending.",
+  "BiLSTM: E-Base MSE=0.0099, R2=0.9872; reduced runs pending."
+]

experiments/O2_data_efficiency/2026-06-09_xgb2_partial_EAC80/artifact/report/o2_report_summary.csv

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+Transformer,E-Base,full,3000,57,171000,136800,34200,27018,,8430.805659532547,2.5364460945129395,50,64,0.0003,/data/home/jason/Seismic-FNO/6-code/O1-baseline-comparison/results/runs/Transformer/checkpoints/Transformer_best.pt,7957775,7.957775,7957775,7.957775,7957775,0.0213903603177851,0.1462544369165773,0.0660383013369173,0.9725034887360728,0.000533425337507,0.023096002630479,0.0149489011169053,0.9799044509395886,0.0214709252808199,0.3250373078083033,0.3907267726411774,0.1057809218764305,1.0,1.0,1.0
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experiments/O2_data_efficiency/2026-06-09_xgb2_partial_EAC80/artifact/run_scripts/run_gpu0_bilstm_o2.sh

@@ -0,0 +1,17 @@
+#!/usr/bin/env bash
+set -euo pipefail
+cd /data/home/jason/Seismic-FNO
+export PYTHONDONTWRITEBYTECODE=1
+export CUDA_VISIBLE_DEVICES=0
+
+/data/home/jason/miniconda3/envs/sefno/bin/python 6-code/O2-data-efficiency/scripts/run_o2_queue.py \
+  --models BiLSTM \
+  --python /data/home/jason/miniconda3/envs/sefno/bin/python \
+  --epochs 50 \
+  --batch_size 64 \
+  --eval_batch_size 64 \
+  --base_data_dir /data/home/jason/data/SesimicTransformerData \
+  --building_dir /data/home/jason/data/SesimicTransformerData/MDOF/knet-250/Data/fno \
+  --output_root 6-code/O2-data-efficiency/results \
+  --no_progress \
+  --log_interval 100

experiments/O2_data_efficiency/2026-06-09_xgb2_partial_EAC80/artifact/run_scripts/run_gpu1_fno_transformer_o2.sh

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+#!/usr/bin/env bash
+set -euo pipefail
+cd /data/home/jason/Seismic-FNO
+export PYTHONDONTWRITEBYTECODE=1
+export CUDA_VISIBLE_DEVICES=1
+
+/data/home/jason/miniconda3/envs/sefno/bin/python 6-code/O2-data-efficiency/scripts/run_o2_queue.py \
+  --models FNO-Large Transformer \
+  --python /data/home/jason/miniconda3/envs/sefno/bin/python \
+  --epochs 50 \
+  --batch_size 64 \
+  --eval_batch_size 64 \
+  --base_data_dir /data/home/jason/data/SesimicTransformerData \
+  --building_dir /data/home/jason/data/SesimicTransformerData/MDOF/knet-250/Data/fno \
+  --output_root 6-code/O2-data-efficiency/results \
+  --no_progress \
+  --log_interval 100

experiments/O2_data_efficiency/2026-06-09_xgb2_partial_EAC80/artifact/run_scripts/run_o2_postprocess_after_training.sh

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+#!/usr/bin/env bash
+set -euo pipefail
+cd /data/home/jason/Seismic-FNO
+export PYTHONDONTWRITEBYTECODE=1
+
+GPU0_PID_FILE=6-code/O2-data-efficiency/results/pids/o2_gpu0_bilstm.pid
+GPU1_PID_FILE=6-code/O2-data-efficiency/results/pids/o2_gpu1_fno_transformer.pid
+
+GPU0_PID=$(cat "$GPU0_PID_FILE")
+GPU1_PID=$(cat "$GPU1_PID_FILE")
+
+echo "Waiting for O2 training queues: GPU0=$GPU0_PID GPU1=$GPU1_PID"
+while kill -0 "$GPU0_PID" 2>/dev/null || kill -0 "$GPU1_PID" 2>/dev/null; do
+  date '+%Y-%m-%d %H:%M:%S still waiting for O2 queues...'
+  sleep 1800
+done
+
+echo "O2 training queues finished. Collecting results..."
+/data/home/jason/miniconda3/envs/sefno/bin/python 6-code/O2-data-efficiency/scripts/collect_o2_results.py \
+  --results_root 6-code/O2-data-efficiency/results
+
+echo "Generating O2 report..."
+/data/home/jason/miniconda3/envs/sefno/bin/python 6-code/O2-data-efficiency/scripts/generate_o2_report.py \
+  --results_root 6-code/O2-data-efficiency/results
+
+echo "O2 postprocess complete."

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experiments/O2_data_efficiency/2026-06-09_xgb2_partial_EAC80/manifest.json

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+}