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Artificially Worn/LEGENDS.txt

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+TEST 1
+N1063
+MOLNAR STAGE 3: FILE 0
+MOLNAR STAGE 3: FILE 1
+MOLNAR STAGE 4: FILE 2
+MOLNAR STAGE 4: FILE 3
+MOLNAR STAGE 5: FILE 4
+MOLNAR STAGE 5: FILE 5
+MOLNAR STAGE 6: FILE 6
+MOLNAR STAGE 6: FILE 7
+
+TEST 2
+N332
+
+MOLNAR STAGE 3: FILE 0
+MOLNAR STAGE 3: FILE 1
+MOLNAR STAGE 4: FILE 2
+MOLNAR STAGE 4: FILE 3
+MOLNAR STAGE 5: FILE 4
+MOLNAR STAGE 5: FILE 5
+MOLNAR STAGE 6: FILE 6
+MOLNAR STAGE 6: FILE 7
+
+TEST 3
+N459
+MOLNAR STAGE 3: FILE 0
+MOLNAR STAGE 3: FILE 1
+MOLNAR STAGE 4: FILE 2
+MOLNAR STAGE 4: FILE 3
+MOLNAR STAGE 5: FILE 4
+MOLNAR STAGE 5: FILE 5
+MOLNAR STAGE 6: FILE 6
+MOLNAR STAGE 6: FILE 7
+
+TEST 4
+N004
+MOLNAR STAGE 3: FILE 0
+MOLNAR STAGE 3: FILE 1
+MOLNAR STAGE 4: FILE 2
+MOLNAR STAGE 4: FILE 3
+MOLNAR STAGE 5: FILE 4
+MOLNAR STAGE 5: FILE 5
+MOLNAR STAGE 6: FILE 6
+MOLNAR STAGE 6: FILE 7
+
+TEST 5
+N705
+MOLNAR STAGE 3: FILE 0
+MOLNAR STAGE 3: FILE 1
+MOLNAR STAGE 4: FILE 2
+MOLNAR STAGE 4: FILE 3
+MOLNAR STAGE 5: FILE 4
+MOLNAR STAGE 5: FILE 5
+MOLNAR STAGE 6: FILE 6
+MOLNAR STAGE 6: FILE 7
+
+TEST 6
+N726
+MOLNAR STAGE 3: FILE 0
+MOLNAR STAGE 3: FILE 1
+MOLNAR STAGE 4: FILE 2
+MOLNAR STAGE 4: FILE 3
+MOLNAR STAGE 5: FILE 4
+MOLNAR STAGE 5: FILE 5
+MOLNAR STAGE 6: FILE 6
+MOLNAR STAGE 6: FILE 7
+
+TEST 7
+N728
+MOLNAR STAGE 3: FILE 0
+MOLNAR STAGE 3: FILE 1
+MOLNAR STAGE 4: FILE 2
+MOLNAR STAGE 4: FILE 3
+MOLNAR STAGE 5: FILE 4
+MOLNAR STAGE 5: FILE 5
+MOLNAR STAGE 6: FILE 6
+MOLNAR STAGE 6: FILE 7
+
+TEST 8
+N891
+MOLNAR STAGE 3: FILE 0
+MOLNAR STAGE 3: FILE 1
+MOLNAR STAGE 4: FILE 2
+MOLNAR STAGE 4: FILE 3
+MOLNAR STAGE 5: FILE 4
+MOLNAR STAGE 5: FILE 5
+MOLNAR STAGE 6: FILE 6
+MOLNAR STAGE 6: FILE 7
+

ssm_pipeline/output/archive/patch_method_chamfer.csv

@@ -0,0 +1,17 @@
+set,level,SSM (baseline),deviation-swap,holes IDW,holes TPS,holes mesh-space,holes gated (final),blend (corresp.)
+TEST1,0,0.0491,0.0499,0.0184,0.0183,0.0183,0.0183,0.0494
+TEST1,1,0.0516,0.052,0.019,0.0187,0.0186,0.0187,0.0506
+TEST1,2,0.0532,0.0538,0.0225,0.0218,0.0219,0.0218,0.0535
+TEST1,3,0.0557,0.0567,0.024,0.0233,0.0234,0.0234,0.0565
+TEST1,4,0.0583,0.0588,0.0296,0.0283,0.0283,0.0282,0.0587
+TEST1,5,0.0602,0.0604,0.0298,0.0281,0.0281,0.0281,0.0604
+TEST1,6,0.0851,0.0891,0.0629,0.0595,0.0596,0.0596,0.0901
+TEST1,7,0.0652,0.2161,0.2044,0.1976,0.1978,0.1978,0.2154
+TEST2,0,0.0523,0.0523,0.0176,0.0175,0.0174,0.0174,0.0497
+TEST2,1,0.0524,0.0524,0.0182,0.0179,0.0179,0.0178,0.0498
+TEST2,2,0.0538,0.0538,0.0192,0.0188,0.0188,0.0189,0.0511
+TEST2,3,0.0537,0.0537,0.0205,0.0199,0.0199,0.0199,0.0522
+TEST2,4,0.0537,0.0536,0.0225,0.0214,0.0213,0.0213,0.0524
+TEST2,5,0.0539,0.0539,0.0262,0.025,0.025,0.025,0.0525
+TEST2,6,0.0676,0.0676,0.0398,0.0377,0.0377,0.0377,0.0673
+TEST2,7,0.0729,0.1228,0.1125,0.0993,0.0981,0.0986,0.124

ssm_pipeline/output/archive/recon_gpmm_run.log

@@ -0,0 +1,208 @@
+CuPy not available, using CPU for linear algebra
+============================================================
+GPMM Posterior Reconstruction
+============================================================
+  Good teeth (prior): 18   Worn teeth: 25
+Building Statistical Shape Model...
+  Loaded 18 shapes with 100000 points each
+  Using CPU for SVD...
+  Keeping 9 components (95.9% variance)
+  PCA modes: 9 (95.9% var)
+
+  tooth_01_wear_real
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.01090, MAE=0.00984, max=0.03222
+      Missing region displacement:   avg=0.01195, max=0.02049
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=82.7%  iters=8  median_resid=0.0107
+    mesh: reconstructed_smooth.ply (depth 7)
+
+  tooth_02_wear_real
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.00938, MAE=0.00833, max=0.02507
+      Missing region displacement:   avg=0.01095, max=0.02473
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=85.4%  iters=6  median_resid=0.0081
+    mesh: reconstructed_smooth.ply (depth 8)
+
+  tooth_03_wear_real
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.02186, MAE=0.01980, max=0.04716
+      Missing region displacement:   avg=0.02490, max=0.03770
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=87.9%  iters=9  median_resid=0.0189
+    mesh: reconstructed_smooth.ply (depth 7)
+
+  tooth_04_wear_real
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.01121, MAE=0.01032, max=0.03021
+      Missing region displacement:   avg=0.01483, max=0.02933
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=90.0%  iters=9  median_resid=0.0106
+    mesh: reconstructed_smooth.ply (depth 7)
+
+  tooth_05_wear_real
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.07150, MAE=0.06386, max=0.18858
+      Missing region displacement:   avg=0.10316, max=0.18693
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=89.4%  iters=5  median_resid=0.0611
+    mesh: reconstructed_smooth.ply (depth 8)
+
+  tooth_06_wear_real
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.02108, MAE=0.01871, max=0.05446
+      Missing region displacement:   avg=0.02779, max=0.05359
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=88.6%  iters=10  median_resid=0.0177
+    mesh: reconstructed_smooth.ply (depth 9)
+
+  tooth_07_wear_real
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.02523, MAE=0.02258, max=0.07376
+      Missing region displacement:   avg=0.03133, max=0.07279
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=76.2%  iters=11  median_resid=0.0239
+    mesh: reconstructed_smooth.ply (depth 9)
+
+  tooth_08_wear_real
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.00871, MAE=0.00745, max=0.02101
+      Missing region displacement:   avg=0.00933, max=0.02042
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=82.8%  iters=8  median_resid=0.0070
+    mesh: skipped
+
+  tooth_09_wear_real
+    trusted(unworn)=100.0%  iters=4  median_resid=0.0120
+    mesh: reconstructed_smooth.ply (depth 9)
+
+  tooth_TEST1_wear_level0
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.00789, MAE=0.00679, max=0.02392
+      Missing region displacement:   avg=0.00975, max=0.02294
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=68.7%  iters=8  median_resid=0.0079
+    mesh: reconstructed_smooth.ply (depth 9)
+
+  tooth_TEST1_wear_level1
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.00793, MAE=0.00688, max=0.02419
+      Missing region displacement:   avg=0.00935, max=0.02370
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=70.1%  iters=8  median_resid=0.0078
+    mesh: reconstructed_smooth.ply (depth 9)
+
+  tooth_TEST1_wear_level2
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.00779, MAE=0.00705, max=0.02336
+      Missing region displacement:   avg=0.00870, max=0.02238
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=71.0%  iters=9  median_resid=0.0080
+    mesh: reconstructed_smooth.ply (depth 9)
+
+  tooth_TEST1_wear_level3
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.00800, MAE=0.00720, max=0.02414
+      Missing region displacement:   avg=0.00903, max=0.02249
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=70.9%  iters=9  median_resid=0.0080
+    mesh: reconstructed_smooth.ply (depth 9)
+
+  tooth_TEST1_wear_level4
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.00801, MAE=0.00718, max=0.02469
+      Missing region displacement:   avg=0.00938, max=0.02428
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=73.2%  iters=7  median_resid=0.0080
+    mesh: reconstructed_smooth.ply (depth 7)
+
+  tooth_TEST1_wear_level5
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.00868, MAE=0.00761, max=0.02608
+      Missing region displacement:   avg=0.01143, max=0.02553
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=74.0%  iters=8  median_resid=0.0085
+    mesh: reconstructed_smooth.ply (depth 7)
+
+  tooth_TEST1_wear_level6
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.01302, MAE=0.01144, max=0.03629
+      Missing region displacement:   avg=0.01733, max=0.03591
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=73.9%  iters=9  median_resid=0.0118
+    mesh: reconstructed_smooth.ply (depth 7)
+
+  tooth_TEST1_wear_level7
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.01094, MAE=0.00993, max=0.03293
+      Missing region displacement:   avg=0.01478, max=0.03258
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=81.1%  iters=9  median_resid=0.0107
+    mesh: reconstructed_smooth.ply (depth 7)
+
+  tooth_TEST2_wear_level0
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.01293, MAE=0.01126, max=0.03245
+      Missing region displacement:   avg=0.01831, max=0.03232
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=88.4%  iters=9  median_resid=0.0105
+    mesh: reconstructed_smooth.ply (depth 8)
+
+  tooth_TEST2_wear_level1
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.01277, MAE=0.01110, max=0.03168
+      Missing region displacement:   avg=0.01739, max=0.03136
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=88.4%  iters=6  median_resid=0.0103
+    mesh: reconstructed_smooth.ply (depth 8)
+
+  tooth_TEST2_wear_level2
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.01278, MAE=0.01106, max=0.03203
+      Missing region displacement:   avg=0.01719, max=0.03184
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=88.2%  iters=7  median_resid=0.0104
+    mesh: reconstructed_smooth.ply (depth 7)
+
+  tooth_TEST2_wear_level3
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.01258, MAE=0.01086, max=0.03128
+      Missing region displacement:   avg=0.01722, max=0.03110
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=87.1%  iters=8  median_resid=0.0101
+    mesh: reconstructed_smooth.ply (depth 8)
+
+  tooth_TEST2_wear_level4
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.01266, MAE=0.01084, max=0.03154
+      Missing region displacement:   avg=0.01672, max=0.03135
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=86.9%  iters=9  median_resid=0.0102
+    mesh: reconstructed_smooth.ply (depth 9)
+
+  tooth_TEST2_wear_level5
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.01341, MAE=0.01162, max=0.03287
+      Missing region displacement:   avg=0.01829, max=0.03268
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=87.7%  iters=12  median_resid=0.0107
+    mesh: reconstructed_smooth.ply (depth 7)
+
+  tooth_TEST2_wear_level6
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.01617, MAE=0.01430, max=0.04222
+      Missing region displacement:   avg=0.02235, max=0.04195
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=85.4%  iters=8  median_resid=0.0137
+    mesh: reconstructed_smooth.ply (depth 7)
+
+  tooth_TEST2_wear_level7
+    Non-rigid refinement:
+      SSM fit error at observed pts: RMSE=0.01826, MAE=0.01597, max=0.04770
+      Missing region displacement:   avg=0.02317, max=0.04735
+      Final self-consistency:         obs RMSE=0.00000000 (should be ~0)
+    trusted(unworn)=83.5%  iters=9  median_resid=0.0155
+    mesh: reconstructed_smooth.ply (depth 9)
+
+Done. 25 reconstructions -> output/recon_gpmm

ssm_pipeline/output/archive/recon_holes_tps_run.log

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+CuPy not available, using CPU for linear algebra
+============================================================
+Wear-Margin Patch Reconstruction
+============================================================
+  Recon dir          : output/recon_neighborhood_v4
+  Correspondence dir : output/correspondence_all_100k
+  Artificial wear    : None
+  Output dir         : output/recon_holes_tps
+  Detect mode        : holes
+  Clean extras       : False (envelope x6.0, min cluster=150)
+  Patch align        : True (collar=4)
+  Mode               : swap
+  Deviation pct      : 75.0
+  Deviation thresh   : None
+  Min component size : 200
+  Transition band    : 3.0 x median spacing
+  Annotation PNG     : True
+
+Found 25 worn teeth to patch
+
+--------------------------------------------------
+  Processing tooth_01_wear_real
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 0 enclosed hole(s), outer rim=491 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 0 interior holes)
+    No enclosed holes -> nothing to patch
+
+--------------------------------------------------
+  Processing tooth_02_wear_real
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 1 enclosed hole(s), outer rim=465 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 1 interior holes)
+      ICP refinement: median dist 0.0068 → 0.0023 mm
+    Patched: +2353 recon pts -> 102353 total (aligned)
+    Patched mesh: patched_holes_mesh.ply (Poisson depth 9)
+
+--------------------------------------------------
+  Processing tooth_03_wear_real
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 3 enclosed hole(s), outer rim=488 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 3 interior holes)
+      ICP refinement: median dist 0.0035 → 0.0028 mm
+      ICP refinement: median dist 0.0127 → 0.0110 mm
+      ICP refinement: median dist 0.0182 → 0.0081 mm
+    Patched: +7632 recon pts -> 107632 total (aligned)
+    Patched mesh: patched_holes_mesh.ply (Poisson depth 8 -- COARSE fallback, surface will look faceted)
+
+--------------------------------------------------
+  Processing tooth_04_wear_real
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 2 enclosed hole(s), outer rim=411 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 2 interior holes)
+      ICP refinement: median dist 0.0039 → 0.0019 mm
+      ICP refinement: median dist 0.0038 → 0.0018 mm
+    Patched: +1400 recon pts -> 101400 total (aligned)
+    Patched mesh: patched_holes_mesh.ply (Poisson depth 9)
+
+--------------------------------------------------
+  Processing tooth_05_wear_real
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 0 enclosed hole(s), outer rim=483 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 0 interior holes)
+    No enclosed holes -> nothing to patch
+
+--------------------------------------------------
+  Processing tooth_06_wear_real
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 3 enclosed hole(s), outer rim=544 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 3 interior holes)
+      ICP refinement: median dist 0.0115 → 0.0084 mm
+      ICP refinement: median dist 0.0146 → 0.0132 mm
+      ICP refinement: median dist 0.0049 → 0.0033 mm
+    Patched: +11057 recon pts -> 111057 total (aligned)
+    Patched mesh: patched_holes_mesh.ply (Poisson depth 9)
+
+--------------------------------------------------
+  Processing tooth_07_wear_real
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 2 enclosed hole(s), outer rim=539 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 2 interior holes)
+      ICP refinement: median dist 0.0135 → 0.0102 mm
+      ICP refinement: median dist 0.0097 → 0.0097 mm
+    Patched: +5202 recon pts -> 105202 total (aligned)
+    Patched mesh: patched_holes_mesh.ply (Poisson depth 9)
+
+--------------------------------------------------
+  Processing tooth_08_wear_real
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 1 enclosed hole(s), outer rim=488 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 1 interior holes)
+      ICP refinement: median dist 0.0083 → 0.0051 mm
+    Patched: +2931 recon pts -> 102931 total (aligned)
+    Patched mesh: patched_holes_mesh.ply (Poisson depth 9)
+
+--------------------------------------------------
+  Processing tooth_09_wear_real
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 1 enclosed hole(s), outer rim=386 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 1 interior holes)
+      ICP refinement: median dist 0.0069 → 0.0032 mm
+    Patched: +2193 recon pts -> 102193 total (aligned)
+    Patched mesh: patched_holes_mesh.ply (Poisson depth 9)
+
+--------------------------------------------------
+  Processing tooth_TEST1_wear_level0
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 3 enclosed hole(s), outer rim=409 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 3 interior holes)
+      ICP refinement: median dist 0.0061 → 0.0029 mm
+      ICP refinement: median dist 0.0039 → 0.0023 mm
+      ICP refinement: median dist 0.0038 → 0.0025 mm
+    Patched: +5940 recon pts -> 105940 total (aligned)
+    Patched mesh: patched_holes_mesh.ply (Poisson depth 9)
+
+--------------------------------------------------
+  Processing tooth_TEST1_wear_level1
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 2 enclosed hole(s), outer rim=421 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 2 interior holes)
+      ICP refinement: median dist 0.0055 → 0.0033 mm
+      ICP refinement: median dist 0.0042 → 0.0034 mm
+    Patched: +5752 recon pts -> 105752 total (aligned)
+    Patched mesh: patched_holes_mesh.ply (Poisson depth 9)
+
+--------------------------------------------------
+  Processing tooth_TEST1_wear_level2
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 3 enclosed hole(s), outer rim=431 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 3 interior holes)
+      ICP refinement: median dist 0.0043 → 0.0037 mm
+      ICP refinement: median dist 0.0076 → 0.0051 mm
+      ICP refinement: median dist 0.0102 → 0.0079 mm
+    Patched: +12366 recon pts -> 112366 total (aligned)
+    Patched mesh: patched_holes_mesh.ply (Poisson depth 9)
+
+--------------------------------------------------
+  Processing tooth_TEST1_wear_level3
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 5 enclosed hole(s), outer rim=422 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 5 interior holes)
+      ICP refinement: median dist 0.0096 → 0.0071 mm
+      ICP refinement: median dist 0.0072 → 0.0035 mm
+      ICP refinement: median dist 0.0072 → 0.0051 mm
+      ICP refinement: median dist 0.0049 → 0.0038 mm
+      ICP refinement: median dist 0.0023 → 0.0023 mm
+    Patched: +14103 recon pts -> 114103 total (aligned)
+    Patched mesh: patched_holes_mesh.ply (Poisson depth 9)
+
+--------------------------------------------------
+  Processing tooth_TEST1_wear_level4
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 4 enclosed hole(s), outer rim=409 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 4 interior holes)
+      ICP refinement: median dist 0.0143 → 0.0093 mm
+      ICP refinement: median dist 0.0051 → 0.0034 mm
+      ICP refinement: median dist 0.0085 → 0.0054 mm
+      ICP refinement: median dist 0.0073 → 0.0063 mm
+    Patched: +17949 recon pts -> 117949 total (aligned)
+    Patched mesh: patched_holes_mesh.ply (Poisson depth 8 -- COARSE fallback, surface will look faceted)
+
+--------------------------------------------------
+  Processing tooth_TEST1_wear_level5
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 4 enclosed hole(s), outer rim=410 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 4 interior holes)
+      ICP refinement: median dist 0.0128 → 0.0089 mm
+      ICP refinement: median dist 0.0117 → 0.0074 mm
+      ICP refinement: median dist 0.0090 → 0.0057 mm
+      ICP refinement: median dist 0.0100 → 0.0077 mm
+    Patched: +20423 recon pts -> 120423 total (aligned)
+    Patched mesh: patched_holes_mesh.ply (Poisson depth 9)
+
+--------------------------------------------------
+  Processing tooth_TEST1_wear_level6
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 3 enclosed hole(s), outer rim=418 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 3 interior holes)
+      ICP refinement: median dist 0.0097 → 0.0051 mm
+      ICP refinement: median dist 0.0118 → 0.0093 mm
+      ICP refinement: median dist 0.0124 → 0.0104 mm
+    Patched: +34949 recon pts -> 134949 total (aligned)
+    Patched mesh: patched_holes_mesh.ply (Poisson depth 9)
+
+--------------------------------------------------
+  Processing tooth_TEST1_wear_level7
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 4 enclosed hole(s), outer rim=453 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 4 interior holes)
+      ICP refinement: median dist 0.0093 → 0.0088 mm
+      ICP refinement: median dist 0.0099 → 0.0072 mm
+      ICP refinement: median dist 0.0083 → 0.0049 mm
+      ICP refinement: median dist 0.0032 → 0.0028 mm
+    Patched: +41792 recon pts -> 141792 total (aligned)
+    Patched mesh: patched_holes_mesh.ply (Poisson depth 9)
+
+--------------------------------------------------
+  Processing tooth_TEST2_wear_level0
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 2 enclosed hole(s), outer rim=418 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 2 interior holes)
+      ICP refinement: median dist 0.0041 → 0.0024 mm
+      ICP refinement: median dist 0.0039 → 0.0033 mm
+    Patched: +2774 recon pts -> 102774 total (aligned)
+    Patched mesh: patched_holes_mesh.ply (Poisson depth 9)
+
+--------------------------------------------------
+  Processing tooth_TEST2_wear_level1
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 3 enclosed hole(s), outer rim=413 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 3 interior holes)
+      ICP refinement: median dist 0.0036 → 0.0032 mm
+      ICP refinement: median dist 0.0045 → 0.0028 mm
+      ICP refinement: median dist 0.0036 → 0.0031 mm
+    Patched: +4593 recon pts -> 104593 total (aligned)
+    Patched mesh: patched_holes_mesh.ply (Poisson depth 9)
+
+--------------------------------------------------
+  Processing tooth_TEST2_wear_level2
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 3 enclosed hole(s), outer rim=436 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 3 interior holes)
+      ICP refinement: median dist 0.0039 → 0.0030 mm
+      ICP refinement: median dist 0.0065 → 0.0042 mm
+      ICP refinement: median dist 0.0048 → 0.0037 mm
+    Patched: +7922 recon pts -> 107922 total (aligned)
+    Patched mesh: patched_holes_mesh.ply (Poisson depth 9)
+
+--------------------------------------------------
+  Processing tooth_TEST2_wear_level3
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 3 enclosed hole(s), outer rim=437 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 3 interior holes)
+      ICP refinement: median dist 0.0042 → 0.0032 mm
+      ICP refinement: median dist 0.0061 → 0.0042 mm
+      ICP refinement: median dist 0.0109 → 0.0102 mm
+    Patched: +10070 recon pts -> 110070 total (aligned)
+    Patched mesh: patched_holes_mesh.ply (Poisson depth 9)
+
+--------------------------------------------------
+  Processing tooth_TEST2_wear_level4
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 3 enclosed hole(s), outer rim=432 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 3 interior holes)
+      ICP refinement: median dist 0.0063 → 0.0050 mm
+      ICP refinement: median dist 0.0069 → 0.0051 mm
+      ICP refinement: median dist 0.0116 → 0.0113 mm
+    Patched: +12998 recon pts -> 112998 total (aligned)
+    Patched mesh: patched_holes_mesh.ply (Poisson depth 9)
+
+--------------------------------------------------
+  Processing tooth_TEST2_wear_level5
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 4 enclosed hole(s), outer rim=443 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 4 interior holes)
+      ICP refinement: median dist 0.0082 → 0.0070 mm
+      ICP refinement: median dist 0.0135 → 0.0051 mm
+      ICP refinement: median dist 0.0069 → 0.0065 mm
+      ICP refinement: median dist 0.0150 → 0.0118 mm
+    Patched: +20097 recon pts -> 120097 total (aligned)
+    Patched mesh: patched_holes_mesh.ply (Poisson depth 9)
+
+--------------------------------------------------
+  Processing tooth_TEST2_wear_level6
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 5 enclosed hole(s), outer rim=456 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 5 interior holes)
+      ICP refinement: median dist 0.0179 → 0.0098 mm
+      ICP refinement: median dist 0.0150 → 0.0088 mm
+      ICP refinement: median dist 0.0066 → 0.0058 mm
+      ICP refinement: median dist 0.0033 → 0.0033 mm
+      ICP refinement: median dist 0.0191 → 0.0189 mm
+    Patched: +34265 recon pts -> 134265 total (aligned)
+    Patched mesh: patched_holes_mesh.ply (Poisson depth 9)
+
+--------------------------------------------------
+  Processing tooth_TEST2_wear_level7
+    Real worn surface (icp_aligned): 100000 pts
+    Geometric holes: 5 enclosed hole(s), outer rim=488 pts
+    Annotation: hole_annotation.ply + .png (red outlines = 5 interior holes)
+      ICP refinement: median dist 0.0099 → 0.0087 mm
+      ICP refinement: median dist 0.0155 → 0.0075 mm
+      ICP refinement: median dist 0.0074 → 0.0056 mm
+      ICP refinement: median dist 0.0191 → 0.0173 mm
+      ICP refinement: median dist 0.0058 → 0.0048 mm
+    Patched: +44277 recon pts -> 144277 total (aligned)
+    Patched mesh: patched_holes_mesh.ply (Poisson depth 9)
+
+============================================================
+Patch Reconstruction Summary
+============================================================
+  Patched teeth: 25
+  Wear fraction: mean=0.6%, range=[0.0%, 2.2%]
+  Output: output/recon_holes_tps

ssm_pipeline/output/correspondence_all_100k/pipeline_config.json

@@ -0,0 +1,40 @@
+{
+  "config": {
+    "n_points": 100000,
+    "scale_method": "bbox_diagonal",
+    "icp_threshold": 0.1,
+    "icp_max_iterations": 100,
+    "icp_tolerance": 1e-06,
+    "cpd_alpha": 2.0,
+    "cpd_beta": 2.0,
+    "cpd_max_iterations": 150,
+    "cpd_tolerance": 1e-05,
+    "cpd_use_cuda": true,
+    "template_idx": 1,
+    "auto_select_template": false,
+    "seed": 42
+  },
+  "good_teeth_count": 15,
+  "artificial_originals_count": 0,
+  "artificial_worn_count": 25,
+  "good_teeth_files": [
+    "cprc_nyu_n0043_ULM3_EDJ GEO.ply",
+    "cprc_nyu_n0047_ULM3_EDJ_GEO.ply",
+    "cprc_nyu_n0049_ULM3_EDJ_GEO.ply",
+    "cprc_nyu_n0256_ULM3_EDJ_GEO.ply",
+    "cprc_nyu_n0258_ULM3_EDJ GEO.ply",
+    "cprc_nyu_n0264_teeth_EDJ GEO.ply",
+    "cprc_nyu_n0266_ULM3_EDJ_GEO.ply",
+    "cprc_nyu_n0269_ULM3_WS_EDJ_GEO.ply",
+    "cprc_nyu_n0291_ULM3_EDJ_GEO.ply",
+    "cprc_nyu_n0292_ULM3_WS_EDJ_GEO.ply",
+    "cprc_nyu_n0293_ULM3_WS_EDJ.ply",
+    "cprc_nyu_n0298_ULM3_WS_EDJ_GEO.ply",
+    "cprc_nyu_n0300_ULM3_WS_EDJ_GEO.ply",
+    "cprc_nyu_n0307_ULM3_WS_EDJ_GEO.ply",
+    "cprc_nyu_n0350_ULM3_WS_EDJ_GEO.ply"
+  ],
+  "gpu_available": true,
+  "probreg_available": true,
+  "timestamp": "2026-03-26T01:20:36.015260"
+}

ssm_pipeline/output/correspondence_v5_10k/pipeline_config.json

@@ -0,0 +1,115 @@
+{
+  "config": {
+    "n_points": 10000,
+    "scale_method": "bbox_diagonal",
+    "icp_threshold": 0.1,
+    "icp_max_iterations": 100,
+    "icp_tolerance": 1e-06,
+    "cpd_alpha": 2.0,
+    "cpd_beta": 2.0,
+    "cpd_max_iterations": 150,
+    "cpd_tolerance": 1e-05,
+    "cpd_use_cuda": true,
+    "template_idx": 64,
+    "auto_select_template": true,
+    "seed": 42
+  },
+  "good_teeth_count": 90,
+  "artificial_originals_count": 8,
+  "artificial_worn_count": 64,
+  "good_teeth_files": [
+    "N100_ULM3 ED.ply",
+    "N102_ULM3 ED.ply",
+    "N104_ULM3 ED.ply",
+    "N1064_ULM3_ED.ply",
+    "N1069_ULM3_ED.ply",
+    "N106_ULM3 ED.ply",
+    "N1070_ULM3_ED.ply",
+    "N107_ULM3 ED.ply",
+    "N113_ULM3_ED.ply",
+    "N139_ULM3 ED.ply",
+    "N14_ULM3 ED.ply",
+    "N171_ULM3_ED.ply",
+    "N184_ULM3_ED.ply",
+    "N191_ULM3_ED.ply",
+    "N199_ULM3 ED.ply",
+    "N201_ULM3_ED.ply",
+    "N204_ULM3_ED.ply",
+    "N205_ULM3_ED.ply",
+    "N207_ULM3_ED.ply",
+    "N208_ULM3_ED.ply",
+    "N20_ULM3 ED.ply",
+    "N212_ULM3_ED.ply",
+    "N225_ULM3 ED.ply",
+    "N233_ULM3 ED.ply",
+    "N238_ULM3 ED.ply",
+    "N245_ULM3 ED.ply",
+    "N246_ULM3 ED.ply",
+    "N252_ULM3 GEO.ply",
+    "N253_ULM3 ED.ply",
+    "N254_ULM3 ED.ply",
+    "N257_ULM3 ED.ply",
+    "N260_ULM3 ED.ply",
+    "N263_ULM3 ED.ply",
+    "N265_ULM3 ED.ply",
+    "N266_ULM3 ED.ply",
+    "N291_ULM3_ED.ply",
+    "N293_ULM3 ED.ply",
+    "N294_ULM3 ED.ply",
+    "N297_ULM3 ED.ply",
+    "N300_ULM3 ED.ply",
+    "N307_ULM3_ED.ply",
+    "N312_ULM3 ED.ply",
+    "N317_ULM3_ED.ply",
+    "N318_ULM3 ED.ply",
+    "N330_ULM3 ED.ply",
+    "N333_ULM3_ED.ply",
+    "N344_ULM3 ED.ply",
+    "N346_ULM3 ED.ply",
+    "N350_ULM3 ED.ply",
+    "N355_ULM3 ED.ply",
+    "N358_ULM3 ED.ply",
+    "N360_ULM3 ED.ply",
+    "N386_ULM3 ED.ply",
+    "N393_ULM3_ED.ply",
+    "N401_ULM3 ED.ply",
+    "N413_ULM3 ED.ply",
+    "N416_ULM3 ED.ply",
+    "N417_ULM3 ED.ply",
+    "N418_ULM3 ED.ply",
+    "N419_ULM3 ED.ply",
+    "N421_ULM3 ED.ply",
+    "N425_ULM3 ED.ply",
+    "N429_ULM3 ED.ply",
+    "N42_ULM3 ED.ply",
+    "N470_ULM3 ED.ply",
+    "N47_ULM3 ED.ply",
+    "N49_ULM3 ED.ply",
+    "N504_ULM3 ED.ply",
+    "N56_ULM3 ED.ply",
+    "N57_ULM3 ED.ply",
+    "N5_ULM3 ED.ply",
+    "N60_ULM3 ED.ply",
+    "N65_ULM3 ED.ply",
+    "N67_ULM3 ED.ply",
+    "N69_ULM3_ED.ply",
+    "N706_ULM3 ED.ply",
+    "N70_ULM3 ED.ply",
+    "N716_ULM3_ED.ply",
+    "N71_ULM3 ED.ply",
+    "N724_ULM3_ED.ply",
+    "N76_ULM3 ED.ply",
+    "N77_ULM3 ED.ply",
+    "N79_ULM3 ED.ply",
+    "N80_ULM3 ED.ply",
+    "N81_ULM3 ED.ply",
+    "N83_ULM3 ED.ply",
+    "N856_ULM3 ED.ply",
+    "N86_ULM3 ED.ply",
+    "N88_ULM3 ED.ply",
+    "N94_ULM3 ED.ply"
+  ],
+  "gpu_available": false,
+  "probreg_available": true,
+  "timestamp": "2026-06-22T21:31:27.919648"
+}

ssm_pipeline/output/eval_flagship_19teeth.csv

@@ -0,0 +1,77 @@
+tooth,method,r_squared_pct,chamfer_mm,hausdorff_mm,rmse_worn_to_recon_mm,rmse_recon_to_worn_mm,mae_worn_to_recon_mm,mae_recon_to_worn_mm,coverage_1x,coverage_2x,coverage_5x
+tooth_06_wear_real,global_ssm,99.67066194562072,0.14833059846850355,0.980211171215317,0.2033635679497508,0.18686084215704515,0.152467502533027,0.14419369440398014,0.04916153938955242,0.1809144649535529,0.4965255157437568
+tooth_06_wear_real,neighborhood_ssm,99.68534423961586,0.14573927870590014,0.980211171215317,0.19877878808420513,0.18584120431339077,0.14850136877663175,0.1429771886351685,0.05053685607431536,0.18698274822053323,0.5096513451562311
+tooth_06_wear_real,gpmm,98.47983707044713,0.3320156363805007,1.7513276864857061,0.4369153107952211,0.4107224091963927,0.34452535757123937,0.31950591518976196,0.020617686089998793,0.06858487151646761,0.18307395343225963
+tooth_06_wear_real,patch_holes,98.65457288955729,0.3435972243645512,1.7184077000538893,0.41103829204172476,0.4582315356682238,0.3250299798647323,0.36216446886437015,0.01873567378453372,0.06529134998190372,0.18896127397756063
+tooth_07_wear_real,global_ssm,99.51201590523529,0.1893409979299152,0.968054304186721,0.25062169602601625,0.24081440712654367,0.19232620032854775,0.1863557955312827,0.0340819616812268,0.12946646169997375,0.36941497006736407
+tooth_07_wear_real,neighborhood_ssm,99.4873041957024,0.1909317413581776,1.0523330947529526,0.2568891210838271,0.24170370563821184,0.19560392544631142,0.18625955727004373,0.03516928499118893,0.12997887843225475,0.37621386524689737
+tooth_07_wear_real,gpmm,97.73037167676766,0.4160711002445306,1.9134754355667927,0.5404968937813919,0.47909203575658027,0.4359095698114998,0.39623263067756137,0.009585942284378788,0.03529426468198918,0.11139439841025833
+tooth_07_wear_real,patch_holes,98.32829860004775,0.39631790736977723,1.9798519578403235,0.4638688230428801,0.5095676832477924,0.3820992540842826,0.4105365606552719,0.011560621399022659,0.043217977078724705,0.12889155512229264
+tooth_08_wear_real,global_ssm,99.9634084274878,0.04823107589492201,0.6197778385405495,0.06441818040556031,0.06168332126016483,0.04904223585283083,0.047419915937013196,0.17829264241820295,0.5399316677343583,0.9146914371129617
+tooth_08_wear_real,neighborhood_ssm,99.96440502999013,0.04710486153202556,0.6197778385405495,0.06353488266522626,0.06028740416495305,0.04804513192682859,0.04616459113722253,0.18476997176548746,0.5537167532683228,0.9204688352670416
+tooth_08_wear_real,gpmm,99.61178207437798,0.17527287065942926,0.7485911143162018,0.20982426422158676,0.2117645755662751,0.17453226546935893,0.17601347584949956,0.03161553609984103,0.11849004674116782,0.33129285595653307
+tooth_08_wear_real,patch_holes,99.63154922806467,0.17434617539589367,0.8406974076298267,0.20441259514652707,0.21583784750787,0.17010769162034678,0.17858465917144056,0.029563195482477992,0.11226184544570195,0.3392530903741666
+tooth_TEST1_wear_level0,global_ssm,99.96671317358447,0.04961167799535648,0.29651558364368674,0.0611167060060995,0.058819600941474384,0.05059387847539024,0.04862947751532271,0.15816979264730732,0.48142515750597437,0.8924735076158061
+tooth_TEST1_wear_level0,neighborhood_ssm,99.96719637488688,0.04912971580113981,0.29651558364368674,0.06067149039480288,0.058267668395706296,0.05016937533917503,0.0480900562631046,0.15784391821758756,0.48780988244381684,0.8938494218746228
+tooth_TEST1_wear_level0,gpmm,99.78760419223545,0.12268433294077438,0.49669416108290787,0.1543820180801381,0.1476475793151991,0.1251467590347383,0.12022190684681046,0.049412219084172156,0.17686532937456248,0.47802158012890145
+tooth_TEST1_wear_level0,patch_holes,99.83383136636645,0.1127430375065826,0.5065698777881334,0.13655206366932823,0.13992164662240344,0.1116432350259815,0.11384283998718368,0.04861563714485722,0.1882588649914307,0.5275182851763343
+tooth_TEST1_wear_level1,global_ssm,99.96457000599949,0.0502227413644714,0.34623901202333396,0.0630535122412482,0.05965702219082275,0.051508498860303335,0.04893698386863947,0.1555748666328723,0.4841649166002848,0.8837714533999566
+tooth_TEST1_wear_level1,neighborhood_ssm,99.96268701969166,0.05174544903196504,0.34623901202333396,0.06470736470632324,0.061441485595199,0.05300791411853312,0.05048298394539697,0.1521833586791223,0.4680160281941729,0.8733796799188934
+tooth_TEST1_wear_level1,gpmm,99.83059040015159,0.11039937697345384,0.44661733383363833,0.137877294165869,0.13119171900415422,0.1127151740433224,0.10808357990358529,0.051596784705626765,0.19162623409853477,0.5206628527288966
+tooth_TEST1_wear_level1,patch_holes,99.88147644642488,0.09408765947457173,0.4304241589929369,0.11532569366805735,0.11480030312100821,0.0943297438455841,0.09384557510355937,0.0563762763415164,0.23402611823207087,0.6125473724865426
+tooth_TEST1_wear_level2,global_ssm,99.95888350939148,0.05249181204312821,0.3804300602209204,0.06792533097324277,0.06167035977248659,0.054489259264962724,0.0504943648212937,0.15202645617592392,0.4706471624785768,0.8611654235160644
+tooth_TEST1_wear_level2,neighborhood_ssm,99.95820150707941,0.053413678866685896,0.3804300602209204,0.06848635538126314,0.06261356444925066,0.05530165520707109,0.05152570252630071,0.14391580370289908,0.4569242281603785,0.8588963719313492
+tooth_TEST1_wear_level2,gpmm,99.82622011075838,0.11267677427789007,0.46154576067518166,0.13964439265925074,0.13141387872496424,0.11555193773557908,0.10980161082020105,0.04253264779008859,0.17262896178820575,0.4992516957539769
+tooth_TEST1_wear_level2,patch_holes,99.87778969316825,0.09628618550506811,0.4732727472124683,0.11710559923568022,0.11513995165384362,0.0965663149946157,0.09600605601552052,0.07639944963429647,0.2527578632292949,0.5793323195017742
+tooth_TEST1_wear_level3,global_ssm,99.95222861769578,0.05434598257682252,0.4651781243760788,0.07321627801937979,0.06310935339543501,0.05708682413469244,0.0516051410189526,0.14613657759432255,0.4572259637434523,0.8515219542810245
+tooth_TEST1_wear_level3,neighborhood_ssm,99.95053849405345,0.056023396138520934,0.4651781243760788,0.0745001952685217,0.06511510258054734,0.058605668558865606,0.05344112371817627,0.1350085692905593,0.434668211552852,0.8415043329229729
+tooth_TEST1_wear_level3,gpmm,99.8106189446778,0.11614058730446136,0.47486978056017154,0.1457780073918889,0.13658800934088072,0.11934031590860641,0.11294085870031631,0.053020976657735294,0.1889347526975161,0.48242691964177953
+tooth_TEST1_wear_level3,patch_holes,99.85304233786097,0.10367889442480568,0.6090602644089583,0.12841621368067563,0.12398888650885453,0.10448176019698142,0.10287602865262994,0.06443865112124943,0.23408646534868563,0.5515243681656891
+tooth_TEST1_wear_level4,global_ssm,99.93586301913247,0.057082522977230946,0.596090324943024,0.08483557342994769,0.06698965081402192,0.06140118523658649,0.05276386071787541,0.1535954812079079,0.4612933594032877,0.8346851087455042
+tooth_TEST1_wear_level4,neighborhood_ssm,99.93356505712163,0.05900061938896309,0.596090324943024,0.08634198452403241,0.06863099512518,0.06334254478784092,0.054658693990085265,0.14606416105438483,0.43801144181331014,0.8215656455934536
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ssm_pipeline/output/eval_old_dataset.csv

@@ -0,0 +1,97 @@
+dataset,set,level,method,full_chamfer,full_coverage_2x,full_hausdorff,full_rmse,worn_mae,worn_n_pts,worn_rmse
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+old,TEST1,0,gpmm_kernel,0.0577,0.2788,0.405,0.0713,0.057,98227,0.0696
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+old,TEST2,0,gpmm_kernel,0.0496,0.3082,0.2925,0.0608,0.0491,98571,0.0601
+old,TEST2,1,global_ssm,0.0519,0.3007,0.3981,0.0635,0.0517,98714,0.0645
+old,TEST2,1,neighborhood_ssm,0.0518,0.2978,0.32,0.0639,0.0513,98714,0.0637
+old,TEST2,1,blend,0.0492,0.3108,0.3109,0.0602,0.0486,98714,0.0599
+old,TEST2,1,patch_holes,0.0168,0.8981,0.2377,0.0207,0.0391,4593,0.0521
+old,TEST2,1,gpmm,0.0496,0.3093,0.2822,0.0609,0.049,98714,0.0599
+old,TEST2,1,gpmm_kernel,0.0496,0.3093,0.2821,0.0609,0.049,98714,0.0599
+old,TEST2,2,global_ssm,0.053,0.2964,0.4085,0.0654,0.0526,98756,0.0656
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+old,TEST2,2,blend,0.0505,0.3103,0.317,0.0625,0.0498,98756,0.0617
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+old,TEST2,2,gpmm,0.0506,0.3085,0.3057,0.0622,0.0499,98756,0.0612
+old,TEST2,2,gpmm_kernel,0.0505,0.3086,0.3057,0.0622,0.0499,98756,0.0612
+old,TEST2,3,global_ssm,0.0527,0.3012,0.4013,0.0657,0.0522,98713,0.0657
+old,TEST2,3,neighborhood_ssm,0.0531,0.2967,0.3577,0.0662,0.0525,98713,0.0655
+old,TEST2,3,blend,0.0515,0.3068,0.3529,0.0642,0.0509,98713,0.0635
+old,TEST2,3,patch_holes,0.0186,0.8844,0.2524,0.023,0.051,10070,0.0655
+old,TEST2,3,gpmm,0.0507,0.3084,0.3062,0.0631,0.0499,98713,0.0614
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+old,TEST2,4,blend,0.0518,0.3075,0.3842,0.0652,0.0509,98678,0.0641
+old,TEST2,4,patch_holes,0.0199,0.8772,0.2352,0.0258,0.0589,12998,0.0747
+old,TEST2,4,gpmm,0.0519,0.302,0.3003,0.0648,0.0509,98678,0.0627
+old,TEST2,4,gpmm_kernel,0.0519,0.3019,0.3,0.0648,0.0509,98678,0.0627
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+old,TEST2,5,blend,0.0518,0.3035,0.3715,0.0652,0.0512,98906,0.0642
+old,TEST2,5,patch_holes,0.0232,0.8623,0.3983,0.035,0.066,20097,0.0849
+old,TEST2,5,gpmm,0.0512,0.309,0.3103,0.0637,0.0505,98906,0.0624
+old,TEST2,5,gpmm_kernel,0.0512,0.3089,0.3103,0.0637,0.0505,98906,0.0624
+old,TEST2,6,global_ssm,0.0673,0.2606,0.6693,0.1088,0.0617,99043,0.0826
+old,TEST2,6,neighborhood_ssm,0.0672,0.266,0.6687,0.108,0.062,99043,0.0837
+old,TEST2,6,blend,0.0669,0.2719,0.6837,0.1086,0.0616,99043,0.0835
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+old,TEST2,6,gpmm,0.0631,0.2729,0.6832,0.0955,0.0593,99043,0.0785
+old,TEST2,6,gpmm_kernel,0.0631,0.2728,0.6832,0.0954,0.0593,99043,0.0784
+old,TEST2,7,global_ssm,0.067,0.2876,0.6183,0.1033,0.0623,98963,0.0861
+old,TEST2,7,neighborhood_ssm,0.0727,0.287,0.8255,0.1344,0.0638,98963,0.0907
+old,TEST2,7,blend,0.1237,0.1474,1.0957,0.2129,0.1095,98963,0.1492
+old,TEST2,7,patch_holes,0.0969,0.2125,0.9541,0.1491,0.1434,44277,0.1932
+old,TEST2,7,gpmm,0.1222,0.1479,1.0852,0.1985,0.1118,98963,0.152
+old,TEST2,7,gpmm_kernel,0.1222,0.1479,1.0853,0.1984,0.1118,98963,0.152

ssm_pipeline/output/eval_v5_dataset.csv

@@ -0,0 +1,321 @@
+dataset,set,level,method,full_chamfer,full_mae,full_rmse,worn_mae,worn_n_pts,worn_rmse
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+v5,N1063,0,patch_holes,0.01011,,0.01188,0.0092,2256,0.01098
+v5,N1063,1,global_ssm,0.00459,0.00673,0.00782,0.00986,4244,0.01068
+v5,N1063,1,neighborhood_ssm,0.00454,0.00665,0.00774,0.00975,4244,0.01058
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+v5,N1063,3,global_ssm,0.00907,0.02229,0.02531,0.02265,9796,0.02556
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+v5,N1063,4,blend,0.01036,0.03074,0.03449,0.03104,9887,0.03468
+v5,N1063,4,patch_holes,0.01331,,0.01641,0.01502,8089,0.01823
+v5,N1063,5,global_ssm,0.01034,0.03617,0.04063,0.03658,9872,0.04089
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+v5,N1063,5,blend,0.01085,0.03795,0.04351,0.03838,9872,0.04379
+v5,N1063,5,patch_holes,0.01466,,0.01886,0.01844,8058,0.02228
+v5,N1063,6,global_ssm,0.01196,0.03473,0.03995,0.03592,9623,0.04072
+v5,N1063,6,neighborhood_ssm,0.01206,0.03498,0.04022,0.03618,9623,0.041
+v5,N1063,6,gpmm,0.01246,0.03636,0.0422,0.0375,9623,0.04297
+v5,N1063,6,blend,0.0121,0.03555,0.04114,0.03677,9623,0.04193
+v5,N1063,6,patch_holes,0.01477,,0.018,0.0166,9578,0.02011
+v5,N1063,7,global_ssm,0.01149,0.04001,0.04284,0.04017,9957,0.04293
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+v5,N1063,7,patch_holes,0.01313,,0.01559,0.01441,12274,0.017
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+v5,N332,0,patch_holes,0.01182,,0.01428,0.00922,1005,0.01058
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+v5,N332,3,patch_holes,0.01194,,0.01482,0.01152,3335,0.01389
+v5,N332,4,global_ssm,0.00694,0.0187,0.0208,0.02005,9149,0.0217
+v5,N332,4,neighborhood_ssm,0.00685,0.01848,0.02059,0.01981,9149,0.02148
+v5,N332,4,gpmm,0.00739,0.02025,0.0229,0.02174,9149,0.02391
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+v5,N332,5,global_ssm,0.00742,0.02076,0.02249,0.02102,9841,0.02266
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+v5,N332,5,gpmm,0.00779,0.02272,0.02498,0.02301,9841,0.02517
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+v5,N332,5,patch_holes,0.01262,,0.01547,0.01299,6676,0.01529
+v5,N332,6,global_ssm,0.01002,0.02688,0.02958,0.02718,9868,0.02977
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+v5,N332,6,gpmm,0.01027,0.02829,0.03141,0.0286,9868,0.03162
+v5,N332,6,blend,0.01001,0.02731,0.03011,0.02762,9868,0.03031
+v5,N332,6,patch_holes,0.01342,,0.01716,0.01428,8320,0.01791
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+v5,N332,7,patch_holes,0.0128,,0.01712,0.01443,7624,0.01838
+v5,N4,0,global_ssm,0.00531,0.01022,0.01204,0.01244,7209,0.01386
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+v5,N4,3,blend,0.00555,0.01122,0.01198,0.01242,8386,0.01281
+v5,N4,3,patch_holes,0.01105,,0.01347,0.01037,1746,0.01171
+v5,N4,4,global_ssm,0.00783,0.01817,0.02006,0.01894,9377,0.02055
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+v5,N4,4,patch_holes,0.01195,,0.01517,0.0129,3771,0.01574
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ssm_pipeline/output/recon_all_v3/reconstruction_summary.json

@@ -0,0 +1,164 @@
+{
+  "n_reconstructed": 25,
+  "ssm_components": 14,
+  "ssm_variance_explained": 0.9935854094993272,
+  "regularization": 1.0,
+  "skip_evaluation": true,
+  "proxy_missing_fraction_mean": 0.15,
+  "proxy_missing_fraction_std": 0.0,
+  "proxy_missing_fraction_min": 0.15,
+  "proxy_missing_fraction_max": 0.15,
+  "results": [
+    {
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+      "rmse_missing": null,
+      "missing_fraction": 0.15,
+      "skip_evaluation": true
+    },
+    {
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+      "skip_evaluation": true
+    },
+    {
+      "name": "tooth_03_wear_real",
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+      "missing_fraction": 0.15,
+      "skip_evaluation": true
+    },
+    {
+      "name": "tooth_04_wear_real",
+      "rmse_missing": null,
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+      "skip_evaluation": true
+    },
+    {
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+      "missing_fraction": 0.15,
+      "skip_evaluation": true
+    },
+    {
+      "name": "tooth_06_wear_real",
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+      "missing_fraction": 0.15,
+      "skip_evaluation": true
+    },
+    {
+      "name": "tooth_07_wear_real",
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+      "missing_fraction": 0.15,
+      "skip_evaluation": true
+    },
+    {
+      "name": "tooth_08_wear_real",
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+      "skip_evaluation": true
+    },
+    {
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+      "rmse_missing": null,
+      "missing_fraction": 0.15,
+      "skip_evaluation": true
+    },
+    {
+      "name": "tooth_TEST1_wear_level0",
+      "rmse_missing": null,
+      "missing_fraction": 0.15,
+      "skip_evaluation": true
+    },
+    {
+      "name": "tooth_TEST1_wear_level1",
+      "rmse_missing": null,
+      "missing_fraction": 0.15,
+      "skip_evaluation": true
+    },
+    {
+      "name": "tooth_TEST1_wear_level2",
+      "rmse_missing": null,
+      "missing_fraction": 0.15,
+      "skip_evaluation": true
+    },
+    {
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+    {
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+    },
+    {
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+      "missing_fraction": 0.15,
+      "skip_evaluation": true
+    },
+    {
+      "name": "tooth_TEST2_wear_level3",
+      "rmse_missing": null,
+      "missing_fraction": 0.15,
+      "skip_evaluation": true
+    },
+    {
+      "name": "tooth_TEST2_wear_level4",
+      "rmse_missing": null,
+      "missing_fraction": 0.15,
+      "skip_evaluation": true
+    },
+    {
+      "name": "tooth_TEST2_wear_level5",
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+      "skip_evaluation": true
+    },
+    {
+      "name": "tooth_TEST2_wear_level6",
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+      "skip_evaluation": true
+    },
+    {
+      "name": "tooth_TEST2_wear_level7",
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+      "missing_fraction": 0.15,
+      "skip_evaluation": true
+    }
+  ],
+  "timestamp": "2026-05-20T18:49:39.646335"
+}

ssm_pipeline/output/recon_all_v5/reconstruction_summary.json

@@ -0,0 +1,398 @@
+{
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+    },
+    {
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+      "skip_evaluation": true
+    },
+    {
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+    },
+    {
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+    {
+      "name": "tooth_N728_wear_level7",
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+    },
+    {
+      "name": "tooth_N891_wear_level0",
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+      "skip_evaluation": true
+    },
+    {
+      "name": "tooth_N891_wear_level1",
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+      "missing_fraction": 0.15,
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+    },
+    {
+      "name": "tooth_N891_wear_level2",
+      "rmse_missing": null,
+      "missing_fraction": 0.15,
+      "skip_evaluation": true
+    },
+    {
+      "name": "tooth_N891_wear_level3",
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+      "skip_evaluation": true
+    },
+    {
+      "name": "tooth_N891_wear_level4",
+      "rmse_missing": null,
+      "missing_fraction": 0.15,
+      "skip_evaluation": true
+    },
+    {
+      "name": "tooth_N891_wear_level5",
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+      "missing_fraction": 0.15,
+      "skip_evaluation": true
+    },
+    {
+      "name": "tooth_N891_wear_level6",
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+      "skip_evaluation": true
+    },
+    {
+      "name": "tooth_N891_wear_level7",
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+      "skip_evaluation": true
+    }
+  ],
+  "timestamp": "2026-06-23T02:16:39.476478"
+}

ssm_pipeline/output/recon_blend/patch_summary.json

@@ -0,0 +1,192 @@
+{
+  "recon_dir": "output/recon_neighborhood_v4",
+  "correspondence_dir": "output/correspondence_all_100k",
+  "mode": "swap",
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+  "deviation_percentile": 75.0,
+  "deviation_threshold": null,
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+  "transition_band": 3.0,
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+  "wear_fraction_min": 0.016,
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+  "chamfer_mm_mean": null,
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+    {
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+      "n_ring_points": 0,
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+    {
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+      "geometric_comparison": null
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+    {
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+      "wear_fraction": 0.14529,
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+    {
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+    {
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+    {
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+    {
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+    {
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+    {
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+    {
+      "name": "tooth_TEST2_wear_level0",
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+    {
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+    {
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+    },
+    {
+      "name": "tooth_TEST2_wear_level4",
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+    },
+    {
+      "name": "tooth_TEST2_wear_level5",
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+    {
+      "name": "tooth_TEST2_wear_level6",
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+    },
+    {
+      "name": "tooth_TEST2_wear_level7",
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+  ],
+  "timestamp": "2026-06-10T20:13:54.590204"
+}

ssm_pipeline/output/recon_blend/reconstructions/tooth_02_wear_real/evaluation.json

@@ -0,0 +1,13 @@
+{
+  "source_worn": "tooth_02_wear_real",
+  "detect_mode": "blend",
+  "n_points": 100000,
+  "blend": {
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+    "hi_deviation": 0.0,
+    "frac_blended": 0.07553,
+    "frac_full_recon": 0.0341,
+    "mean_weight": 0.052212482638888884
+  },
+  "mesh_poisson_depth": 9
+}

ssm_pipeline/output/recon_blend/reconstructions/tooth_03_wear_real/evaluation.json

@@ -0,0 +1,13 @@
+{
+  "source_worn": "tooth_03_wear_real",
+  "detect_mode": "blend",
+  "n_points": 100000,
+  "blend": {
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+    "frac_full_recon": 0.05898,
+    "mean_weight": 0.08206214187652877
+  },
+  "mesh_poisson_depth": 9
+}

ssm_pipeline/output/recon_blend/reconstructions/tooth_05_wear_real/evaluation.json

@@ -0,0 +1,13 @@
+{
+  "source_worn": "tooth_05_wear_real",
+  "detect_mode": "blend",
+  "n_points": 100000,
+  "blend": {
+    "lo_deviation": 0.0,
+    "hi_deviation": 0.0,
+    "frac_blended": 0.016,
+    "frac_full_recon": 0.01203,
+    "mean_weight": 0.013818784722222222
+  },
+  "mesh_poisson_depth": 9
+}

ssm_pipeline/output/recon_blend/reconstructions/tooth_08_wear_real/evaluation.json

@@ -0,0 +1,13 @@
+{
+  "source_worn": "tooth_08_wear_real",
+  "detect_mode": "blend",
+  "n_points": 100000,
+  "blend": {
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+    "hi_deviation": 0.00038357714706819054,
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+  },
+  "mesh_poisson_depth": 9
+}