bin/export_structured_data.py

from typing import Iterator, List, Dict, TypeVar
import json
import argparse
from concurrent.futures import ThreadPoolExecutor
from itertools import islice

import smart_open
from tqdm import tqdm
import jmespath
import gcld3

T = TypeVar("T")


detector = gcld3.NNetLanguageIdentifier(min_num_bytes=20, max_num_bytes=1000)


def batch_iterator(iterator: Iterator[T], batch_size: int = 50) -> Iterator[List[T]]:
    """
    Batch an iterator into an iterator over lists of batch size.
    """
    iterator = iter(iterator)
    while True:
        batch = list(islice(iterator, batch_size))
        if not batch:
            return
        yield batch


def process_chunk(chunk: List, extractor: jmespath.parser.ParsedResult) -> List[Dict]:
    """
    Apply JMESPath to a chunk of JSONL data.
    """
    results: List[Dict] = []
    for line in chunk:
        data = json.loads(line)
        extracted = extractor.search(data)
        if extracted is not None:
            if not isinstance(extracted, list):
                extracted = [extracted]

            try:
                extracted_str = " ".join(
                    set([ex for ex in extracted if isinstance(ex, str)])
                ).strip()
            except:
                print(json.dumps(data, ensure_ascii=False))
                raise

            lang = detector.FindLanguage(extracted_str)
            url = data["url"]
            schema_type = data["schema_type"]
            del data["url"]
            del data["schema_type"]

            wrapped_data = {
                "payload": data,
                "language": lang.language,
                "language_is_reliable": lang.is_reliable,
                "text_length": len(extracted_str),
                "data_length": len(line),
                "text_to_data_ratio": len(extracted_str) / len(line),
                "url": url,
                "schema_type": schema_type,
            }

            results.append(wrapped_data)

    return results


def process_file(
    input_files: str,
    output_file: str,
    chunk_size: int,
    num_threads: int,
    extractor: jmespath.parser.ParsedResult,
):
    """
    Apply JMESPath to a large JSONL file in parallel.
    input_file: path to input JSONL file
    output_file: path to output JSONL file
    chunk_size: number of lines to process at a time
    num_threads: number of threads to use
    extractor: compiled JMESPath expression to apply
    """
    with smart_open.open(output_file, "wt", encoding="utf-8") as writer:
        for input_file in input_files:
            with smart_open.open(input_file, "rt", encoding="utf-8") as reader:
                with ThreadPoolExecutor(max_workers=num_threads) as executor:
                    for chunk in batch_iterator(tqdm(reader), batch_size=chunk_size):
                        if not chunk:
                            break

                        results = executor.map(process_chunk, [chunk], [extractor])
                        for result in results:
                            for item in result:
                                writer.write(json.dumps(item, ensure_ascii=False))
                                writer.write("\n")


if __name__ == "__main__":
    parser = argparse.ArgumentParser(
        description="Apply JMESPath to a large JSONL files in parallel."
    )
    parser.add_argument("input_files", help="path to input JSONL files", nargs="+")
    parser.add_argument("output_file", help="path to output JSONL file")
    parser.add_argument(
        "--chunk-size",
        type=int,
        default=10000,
        help="number of lines to process at a time (default: 10000)",
    )
    parser.add_argument(
        "--num-threads",
        type=int,
        default=4,
        help="number of threads to use (default: 4)",
    )
    args = parser.parse_args()
    # TODO: itemListElement as text or Thing?
    jmespath_expression: jmespath.parser.ParsedResult = jmespath.compile(
        "[name, description, headline, about, tool, supply, keywords, step[].name, step[].text, step[].itemListElement[].text, "
        + "step[].itemListElement[].itemListElement[].text, mainEntity[].name, mainEntity[].acceptedAnswer.text, "
        + "mainEntity[].acceptedAnswer.name, mainEntity.name, mainEntity.acceptedAnswer.text, "
        + "mainEntity.*.acceptedAnswer[].text, mainEntity[].acceptedAnswer[].text, step.itemListElement[].text, step.itemListElement[].itemListElement[].text][][]"
    )

    process_file(
        args.input_files,
        args.output_file,
        args.chunk_size,
        args.num_threads,
        jmespath_expression,
    )