#!/usr/bin/env python3 """Score a prediction file against the labels for one property and condition.""" import argparse import json import sys from pathlib import Path RELEASE = Path(__file__).resolve().parents[1] DATA = RELEASE / "data" PROPERTIES = ( "dipole", "gap", "infrared", "raman", "ultraviolet_visible", "proton_nmr_peaks", "proton_nmr_integration", "proton_nmr_atom", "carbon_nmr_peaks", "carbon_nmr_degeneracy", "carbon_nmr_atom", "electronic", "magnetic_resonance", "vibrational", "all_properties", ) CONDITIONS = ("correct", "shuffled", "counterfactual") def load_jsonl(path): rows = [] for line_number, line in enumerate(path.read_text().splitlines(), start=1): if not line.strip(): continue try: row = json.loads(line) except json.JSONDecodeError as error: raise ValueError(f"{path}:{line_number}: {error}") from error if not isinstance(row, dict) or "record_id" not in row: raise ValueError(f"{path}:{line_number}: missing record_id") rows.append(row) return rows def load_task(property_name, condition): if property_name not in PROPERTIES or condition not in CONDITIONS: raise ValueError(f"unknown property or condition: {property_name} {condition}") tasks = load_jsonl(DATA / property_name / f"{condition}.jsonl") labels = load_jsonl(DATA / property_name / f"{condition}.labels.jsonl") if [row["record_id"] for row in tasks] != [row["record_id"] for row in labels]: raise ValueError(f"task and label record_id lists differ: {property_name} {condition}") scored = [] for task, label in zip(tasks, labels): if not isinstance(label.get("label"), int): raise ValueError(f"label is not an integer: {label['record_id']}") n_candidates = len(task["candidate_completed_smiles"]) if not 0 <= label["label"] < n_candidates: raise ValueError(f"label out of range: {label['record_id']}") scored.append((task["record_id"], label["label"], n_candidates)) return scored def load_predictions(path): chosen = {} for row in load_jsonl(path): record_id = row["record_id"] if record_id in chosen: raise ValueError(f"duplicate prediction: {record_id}") if row.get("invalid") is True or "selected_candidate_index" not in row: chosen[record_id] = None continue index = row["selected_candidate_index"] if not isinstance(index, int) or isinstance(index, bool): raise ValueError(f"selected_candidate_index is not an integer: {record_id}") chosen[record_id] = index return chosen def score(property_name, condition, predictions): hits = 0 invalid = 0 missing = 0 out_of_range = 0 tasks = load_task(property_name, condition) for record_id, label, n_candidates in tasks: if record_id not in predictions: missing += 1 continue choice = predictions[record_id] if choice is None: invalid += 1 continue if not 0 <= choice < n_candidates: out_of_range += 1 continue hits += choice == label n = len(tasks) return { "property": property_name, "condition": condition, "n": n, "hits": hits, "accuracy": hits / n if n else None, "missing": missing, "invalid": invalid, "out_of_range": out_of_range, } def main(): parser = argparse.ArgumentParser(description=__doc__) parser.add_argument("--property", required=True, choices=PROPERTIES) parser.add_argument("--condition", required=True, choices=CONDITIONS) parser.add_argument("--predictions", required=True, type=Path) args = parser.parse_args() result = score(args.property, args.condition, load_predictions(args.predictions)) json.dump(result, sys.stdout, indent=2) sys.stdout.write("\n") return 0 if __name__ == "__main__": raise SystemExit(main())