"""Inspect extra_tooth_labels/ and report which case each file maps to + what preprocess.assemble_label will do. python -m toothcanal.inspect_labels --config configs/default.yaml Use this BEFORE running preprocess on cases 21-30: it tells you which files in extra_tooth_labels/ are recognized, which case each is mapped to, and whether the content already contains tooth bodies (overrides HF label) or only teeth / only canal (needs merging). """ import os, re, glob, argparse import numpy as np from .utils import load_config, load_nii def case_candidates(name): """Return the set of plausible case numbers (1..40) suggested by filename.""" import re runs = re.findall(r"\d+", name) plausible = set() for r in runs: n = int(r) if 1 <= n <= 40: plausible.add(n) for w in (2, 3): for i in range(len(r) - w + 1): n = int(r[i:i + w]) if 1 <= n <= 40: plausible.add(n) return sorted(plausible) def main(): ap = argparse.ArgumentParser() ap.add_argument("--config", default="configs/default.yaml") args = ap.parse_args() cfg = load_config(args.config) extra = cfg["paths"].get("extra_tooth_dir") if not extra or not os.path.isdir(extra): raise SystemExit(f"extra_tooth_dir not found: {extra}") ls = cfg["label_scheme"] cands = sorted(glob.glob(os.path.join(extra, "**", "*.nii.gz"), recursive=True)) if not cands: raise SystemExit(f"no .nii.gz files in {extra}") print(f"\nInspecting {len(cands)} files in {extra}\n") print(f"{'file':50s} {'cases':>14s} {'shape':>15s} {'labels':>40s} verdict") print("-" * 145) by_case = {} for p in cands: base = os.path.basename(p) guesses = case_candidates(base) try: vol, _ = load_nii(p) vol = np.rint(vol).astype(np.int16) uniq = sorted(int(v) for v in np.unique(vol) if v != 0) except Exception as e: print(f"{base:50s} READ FAIL: {e}") continue has_canal = any(ls["canal_lo"] <= v <= ls["canal_hi"] for v in uniq) has_body = any(ls["body_lo"] <= v <= ls["body_hi"] for v in uniq) if has_canal and has_body: verdict = "COMPLETE (will override HF label)" elif has_canal and not has_body: verdict = "canal-only (won't be used; rename / replace)" elif has_body and not has_canal: verdict = "body-only (will be merged with HF canal)" else: verdict = "binary or unknown -> will be merged" head = (str(uniq)[:38] + "..") if len(str(uniq)) > 40 else str(uniq) cstr = ",".join(str(c) for c in guesses) if guesses else "-" print(f"{base[:50]:50s} {cstr:>14s} {str(vol.shape):>15s} {head:>40s} {verdict}") for n in guesses: by_case.setdefault(n, []).append((base, verdict)) print("\nPer-case summary (production resolution via find_extra_tooth):") from .assemble import find_extra_tooth extra_dir = cfg["paths"]["extra_tooth_dir"] chosen = {} for n in range(1, 41): p = find_extra_tooth(n, extra_dir) if p: chosen[n] = os.path.basename(p) for n in sorted(chosen): print(f" case {n:>2}: -> {chosen[n]}") missing = [n for n in range(21, 31) if n not in chosen] if missing: print(f"\n WARNING: no extra label resolved for cases {missing} in 21-30 range.") if __name__ == "__main__": main()