Add DeepDRiD admission summary (JSON)

archives/deepdrid/admission_summary.json

@@ -0,0 +1,256 @@
+{
+  "dataset_id": "deepdrid_v1.1_regular_fundus",
+  "official_source": "https://github.com/deepdrdoc/DeepDRiD",
+  "official_tag": "v1.1",
+  "official_commit": "56d8af71319803150d0e7b90533e0918c7bf85ee",
+  "license": "CC-BY-SA-4.0 (official repository)",
+  "label_mapping": {
+    "image_label": "eye-specific left_eye_DR_Level/right_eye_DR_Level selected from image_id eye",
+    "class_order": [
+      0,
+      1,
+      2,
+      3,
+      4
+    ]
+  },
+  "rows": 1600,
+  "patients": 400,
+  "official_train": {
+    "rows": 1200,
+    "patients": 300,
+    "labeled_rows": 1189,
+    "unlabeled_rows": 11
+  },
+  "official_validation": {
+    "rows": 400,
+    "patients": 100,
+    "labeled_rows": 400,
+    "label_counts": {
+      "0": 174,
+      "1": 46,
+      "2": 92,
+      "3": 68,
+      "4": 20
+    }
+  },
+  "patient_overlap_train_validation": 0,
+  "exact_duplicate_hash_groups": 0,
+  "aptos_exact_byte_overlap_rows": 0,
+  "frozen_external_cohort": "official_validation",
+  "frozen_external_rows": 400,
+  "manifest_path": "/training_data/lizekun/data/deepdrid/admission_v1/deepdrid_admission_manifest.csv",
+  "manifest_sha256": "2343c8a402cf8e57670b20aadf13646ac730fe9ac2ef16d0152b5e9c57b8f739",
+  "admission_status": "admitted_for_frozen_external_transfer",
+  "notes": [
+    "Official validation is retained as the external frozen evaluation cohort; official train is reserved for a later, separate native adaptation experiment.",
+    "Perceptual hashes only identify review candidates and do not trigger exclusions."
+  ],
+  "perceptual_duplicate_screening": {
+    "method": "fundus-crop pHash64",
+    "review_threshold_hamming_lte": 4,
+    "cross_split_candidate_pairs": 58,
+    "automatic_exclusion": false,
+    "candidate_examples": [
+      {
+        "train_case_id": "deepdrid_v1.1::official_train::5_l2",
+        "validation_case_id": "deepdrid_v1.1::official_validation::360_l2",
+        "distance": 4
+      },
+      {
+        "train_case_id": "deepdrid_v1.1::official_train::5_l2",
+        "validation_case_id": "deepdrid_v1.1::official_validation::367_l2",
+        "distance": 4
+      },
+      {
+        "train_case_id": "deepdrid_v1.1::official_train::5_l2",
+        "validation_case_id": "deepdrid_v1.1::official_validation::397_l2",
+        "distance": 4
+      },
+      {
+        "train_case_id": "deepdrid_v1.1::official_train::25_r2",
+        "validation_case_id": "deepdrid_v1.1::official_validation::310_r2",
+        "distance": 4
+      },
+      {
+        "train_case_id": "deepdrid_v1.1::official_train::34_l1",
+        "validation_case_id": "deepdrid_v1.1::official_validation::351_l1",
+        "distance": 4
+      },
+      {
+        "train_case_id": "deepdrid_v1.1::official_train::34_l2",
+        "validation_case_id": "deepdrid_v1.1::official_validation::351_l1",
+        "distance": 4
+      },
+      {
+        "train_case_id": "deepdrid_v1.1::official_train::36_r2",
+        "validation_case_id": "deepdrid_v1.1::official_validation::360_r2",
+        "distance": 4
+      },
+      {
+        "train_case_id": "deepdrid_v1.1::official_train::45_r2",
+        "validation_case_id": "deepdrid_v1.1::official_validation::404_r2",
+        "distance": 4
+      },
+      {
+        "train_case_id": "deepdrid_v1.1::official_train::63_l2",
+        "validation_case_id": "deepdrid_v1.1::official_validation::332_l2",
+        "distance": 4
+      },
+      {
+        "train_case_id": "deepdrid_v1.1::official_train::65_l1",
+        "validation_case_id": "deepdrid_v1.1::official_validation::350_l2",
+        "distance": 4
+      },
+      {
+        "train_case_id": "deepdrid_v1.1::official_train::65_l1",
+        "validation_case_id": "deepdrid_v1.1::official_validation::369_l2",
+        "distance": 4
+      },
+      {
+        "train_case_id": "deepdrid_v1.1::official_train::65_r1",
+        "validation_case_id": "deepdrid_v1.1::official_validation::325_r2",
+        "distance": 4
+      },
+      {
+        "train_case_id": "deepdrid_v1.1::official_train::65_r1",
+        "validation_case_id": "deepdrid_v1.1::official_validation::358_r1",
+        "distance": 4
+      },
+      {
+        "train_case_id": "deepdrid_v1.1::official_train::73_l1",
+        "validation_case_id": "deepdrid_v1.1::official_validation::381_l1",
+        "distance": 4
+      },
+      {
+        "train_case_id": "deepdrid_v1.1::official_train::77_l3",
+        "validation_case_id": "deepdrid_v1.1::official_validation::369_l2",
+        "distance": 4
+      },
+      {
+        "train_case_id": "deepdrid_v1.1::official_train::77_l4",
+        "validation_case_id": "deepdrid_v1.1::official_validation::360_l2",
+        "distance": 4
+      },
+      {
+        "train_case_id": "deepdrid_v1.1::official_train::77_l4",
+        "validation_case_id": "deepdrid_v1.1::official_validation::367_l2",
+        "distance": 4
+      },
+      {
+        "train_case_id": "deepdrid_v1.1::official_train::83_l1",
+        "validation_case_id": "deepdrid_v1.1::official_validation::351_l1",
+        "distance": 4
+      },
+      {
+        "train_case_id": "deepdrid_v1.1::official_train::83_l2",
+        "validation_case_id": "deepdrid_v1.1::official_validation::360_r2",
+        "distance": 4
+      },
+      {
+        "train_case_id": "deepdrid_v1.1::official_train::93_r1",
+        "validation_case_id": "deepdrid_v1.1::official_validation::338_r1",
+        "distance": 2
+      }
+    ],
+    "secondary_check": "cropped equalized grayscale SSIM 256",
+    "secondary_review_threshold_gte": 0.9,
+    "high_similarity_pairs": 0,
+    "top_similarity_examples": [
+      {
+        "ssim": 0.670125,
+        "train_case_id": "deepdrid_v1.1::official_train::143_r1",
+        "validation_case_id": "deepdrid_v1.1::official_validation::433_r1",
+        "phash_distance": 4
+      },
+      {
+        "ssim": 0.657129,
+        "train_case_id": "deepdrid_v1.1::official_train::283_r2",
+        "validation_case_id": "deepdrid_v1.1::official_validation::388_r1",
+        "phash_distance": 4
+      },
+      {
+        "ssim": 0.643231,
+        "train_case_id": "deepdrid_v1.1::official_train::280_r1",
+        "validation_case_id": "deepdrid_v1.1::official_validation::360_r2",
+        "phash_distance": 4
+      },
+      {
+        "ssim": 0.630812,
+        "train_case_id": "deepdrid_v1.1::official_train::204_r1",
+        "validation_case_id": "deepdrid_v1.1::official_validation::358_r2",
+        "phash_distance": 4
+      },
+      {
+        "ssim": 0.627806,
+        "train_case_id": "deepdrid_v1.1::official_train::216_r1",
+        "validation_case_id": "deepdrid_v1.1::official_validation::323_r1",
+        "phash_distance": 4
+      },
+      {
+        "ssim": 0.626782,
+        "train_case_id": "deepdrid_v1.1::official_train::186_l2",
+        "validation_case_id": "deepdrid_v1.1::official_validation::397_l2",
+        "phash_distance": 4
+      },
+      {
+        "ssim": 0.623603,
+        "train_case_id": "deepdrid_v1.1::official_train::210_r1",
+        "validation_case_id": "deepdrid_v1.1::official_validation::334_r1",
+        "phash_distance": 4
+      },
+      {
+        "ssim": 0.620036,
+        "train_case_id": "deepdrid_v1.1::official_train::115_r1",
+        "validation_case_id": "deepdrid_v1.1::official_validation::394_r1",
+        "phash_distance": 4
+      },
+      {
+        "ssim": 0.609572,
+        "train_case_id": "deepdrid_v1.1::official_train::77_l4",
+        "validation_case_id": "deepdrid_v1.1::official_validation::360_l2",
+        "phash_distance": 4
+      },
+      {
+        "ssim": 0.609397,
+        "train_case_id": "deepdrid_v1.1::official_train::186_l2",
+        "validation_case_id": "deepdrid_v1.1::official_validation::332_l2",
+        "phash_distance": 4
+      }
+    ]
+  },
+  "aptos_perceptual_overlap_screening": {
+    "aptos_images": 3662,
+    "deepdrid_external_images": 400,
+    "phash_candidate_pairs": 4,
+    "secondary_check": "cropped equalized grayscale SSIM 256",
+    "high_similarity_pairs_gte_0_90": 0,
+    "top_similarity_examples": [
+      {
+        "ssim": 0.501909,
+        "deepdrid_case_id": "deepdrid_v1.1::official_validation::356_r2",
+        "aptos_relative_path": "train/anodr/de18071c36e6.png",
+        "phash_distance": 2
+      },
+      {
+        "ssim": 0.486179,
+        "deepdrid_case_id": "deepdrid_v1.1::official_validation::343_l2",
+        "aptos_relative_path": "train/anodr/190a309f2cc5.png",
+        "phash_distance": 2
+      },
+      {
+        "ssim": 0.38601,
+        "deepdrid_case_id": "deepdrid_v1.1::official_validation::356_r2",
+        "aptos_relative_path": "train/anodr/f952ad2e4356.png",
+        "phash_distance": 4
+      },
+      {
+        "ssim": 0.369131,
+        "deepdrid_case_id": "deepdrid_v1.1::official_validation::306_r2",
+        "aptos_relative_path": "test/anodr/1f5496352859.png",
+        "phash_distance": 4
+      }
+    ],
+    "automatic_exclusion": false
+  }
+}