[ { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TNFAIP8 ARHGAP24 ATXN1 RUNX1 FNBP1 ASAP1 RASGEF1B ARID5B ATG5 PVT1 AC068896.1 ZC3H12D RAD51B MIR29B2CHG TOX BACH2 AC008764.1 ZNRF2 CIC RASSF2 KAT6B SH3BP5 RAPGEF1 ARHGAP25 DOCK10 PIK3AP1 AC009226.1 TSPAN5 ITK BCL2 ZDHHC14 DUSP22 NEDD4L PLCL2 IL1RAP STK10 IKZF1 PLCG2 NSMCE2 PATL2 BANK1 ANKRD33B AMPD3 BCL2L1 LBH TSPOAP1 CDC42EP3 LINC00598 JADE2 LINC01135 NFATC2 LINC01185 AC008105.3 ITPKB RIPOR2 FAM107B PLEC CELF2 IL21R KANK1 AUTS2 AC010894.3 ST3GAL1 NDUFAF6 LPP CHST11 CAMK1D AL138752.2 RIPOR1 DOCK9 PRKCB NFKB2 AHR AMZ1 MIR155HG RGS9 CSK PHF19 MCF2L2 PLXNC1 SGK1 TGFBR2 SEPT9 LINC01358 STIM1 HIVEP2 AL591885.1 ECE1 KDM2B XXYLT1 FGD5-AS1 EMC9 CHD9 SUMF1 MRPL33 USP7 ZNF395 GDI2 CGGBP1 SERTAD2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 RUNX1 BACH2 ATXN1 CELF2 HIVEP2 ANKRD44 UBAC2 LINC01588 PATL2 KLF13 ETV6 TNFAIP8 LINC00598 LYN RASGEF1B HIVEP3 SETBP1 CCDC88C EBF1 MBNL1 AKAP13 CSGALNACT1 AC016831.7 EPS15L1 RAD51B ASAP1 NCOA2 ETS1 PVT1 MYH9 PRKCE LPP GNG7 RIPOR2 ST8SIA4 BCL11A MIR155HG DLGAP1 EPC1 SMAD3 TMEM131L CDH23 CCND3 TBC1D5 UST OSBPL10 PTK2B VMP1 MYO5A MSI2 PRKCB ST6GAL1 MBP TG ACTB DOCK10 NRL DLEU2 FBXL19 CYTIP SUSD6 MACF1 PDE4B MAST4 RERE FOXN3 ANXA11 PTPRJ AUTS2 ATG5 CDC14A BCAR3 ARID5B TSPOAP1 RPS6KA2 RMI2 PALM2-AKAP2 BCL2 CRYBG1 TBC1D22A MGAT5 SERINC5 SNX9 NEAT1 RBPJ MAML2 AL031599.1 DUSP22 BICRAL RASSF3 CIC DNMT3A ZNF365 CHST11 PLEC IQSEC1 TGFBR2 IKZF3 CD82\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 AC016831.7 RFX3 IKZF1 ARID5B AC068896.1 MEF2C FOXN3 AC063949.2 ST6GAL1 RMI2 GALNT2 ADAM19 PRKCH RAD51B MBNL1 MTSS1 UMAD1 POU2AF1 ETV6 PDE4D BCL2 LPIN2 LPP LINC01588 HIVEP2 AC009126.1 CFLAR ETS1 AC007384.1 PDE4B MXI1 TMEM131L P2RY8 CORO1C BCOR ITPKB AMPD3 KAT2B HOOK2 KDM2B ARHGAP24 SLC39A10 SLC2A1 SEPT9 WWOX LBH PCAT1 NEAT1 BCAR3 SERTAD2 CAMK2D ARHGEF2 ABTB2 SGMS1 CELF2 XXYLT1 INPP5A MAML3 PLXNC1 PRKCB RASGEF1B OSBPL3 AKNA CDH23 LINC01004 TMEM154 RPS6KA2 ELF2 CARS2 SETBP1 TG RAB30 CLIC4 MEF2D LMBRD1 CLEC2D TTC21B TRMT1L PRKAG2 CASP8 AL359710.1 FAM107B RREB1 ARHGAP25 ARID1B CASK MAP3K5 HECW2 ST3GAL1 KLF6 ANK1 QKI CIC SPART CCR7 PCDH9 CXCR5 LINC01126 RIPOR2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LPP FOXP1 ATXN1 MAML2 BACH2 ARID5B RAD51B BCL11A RASGEF1B RMI2 CELF2 SETBP1 LPIN1 CCDC6 TNFAIP8 AC010894.3 TSPOAP1 ST6GAL1 CHST11 SH3BP5 UBAC2 FOXN3 ETS1 ARHGAP25 SEPT9 NEAT1 IKZF1 KLF9 TFEB PPP1CA CYTH1 MARCH3 AC016831.7 JADE2 SSH2 RAPGEF1 ANKRD44 B4GALT1 USP3 RUNX1 CD82 HDAC9 NDUFV2 CLEC16A HECW2 UST AL138720.1 ZCCHC7 PVT1 AKAP13 P2RY8 CIITA KLF13 ARID1B CSGALNACT1 TGFBR2 LINC00598 PRKCE PIK3C2B TBC1D5 BCL6 EBF1 TRANK1 SMAD3 CARS2 SSPN STPG1 MBNL1 XYLT1 RAB30 RIPOR2 RFX3 MICAL1 MIR155HG ELMSAN1 FGFR1OP ZFP36 ETV6 RASSF2 IKZF3 RBMS1 XPO1 AC084200.1 HIVEP3 HMGB1 TRAF1 PRKAG2 EHD1 LYN JARID2 BCL2 ENTPD1 TRIO DSE NKIRAS1 GRK5 MYH9 GSK3B LINC01588 FOXO3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: IKZF1 BACH2 ATXN1 FOXP1 CELF2 PDE4B UBAC2 BCL2 TSPOAP1 PIP4K2A FYN CYTIP ITPKB TG TNFAIP8 RUNX1 TTC33 RNF216 MAML2 SORL1 AC010894.3 LINC00598 FAM107B ECE1 ANKRD44 JMJD1C LINC01588 HIVEP2 SDR42E2 CCND3 ARHGAP15 STK10 AKAP13 AC016831.7 CD247 PDE4D RAD51B ARHGAP26 PCAT1 LIPA ARID1B ATG5 HIVEP3 UST RMI2 RAPGEF1 LINC01934 ARID5B RAP1GAP2 NFATC2 AC009126.1 BCL11B ARHGAP25 PRKCB RIPOR2 ELMO1 KAT6B ST3GAL1 GPR68 SEMA4D IQGAP2 PVT1 RUNX3 CROCC ABHD15-AS1 PATL2 HOOK2 CHST11 VOPP1 STIM1 STK17B LPXN SGK1 AUTS2 DNM2 LMO4 AKNA EVL NFKB1 MAST4 MGAT5 CCDC88C SGMS1 ANKRD11 TMEM131L FOXN3 RRAS SMG6 INPP5A IKZF3 FNBP1 HDAC4 ITK TLDC1 FBXO11 EHD1 FYCO1 LINC01135 AC099063.1 G3BP2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PDE4D RAB30 MOB1B LINC01588 RUNX1 MGAT5 GNB2 KLF13 ETV6 FOXP1 RAD51B MARCH3 TIPARP LRCH1 RIN3 BCL2 RMI2 ETS1 ARHGAP25 RBMS1 AC068896.1 RHBDD1 LINC02356 TMEM243 KDM4C FOXN3 PALM2-AKAP2 TPR DOCK8 FCHSD2 MTA3 RASGEF1B ZFAT LPP RGMB STXBP5-AS1 CXCR4 CAND1 MAP3K3 HDAC7 LRMP PHF20 ADAMTSL4 NXPE3 PPIG CREB3L2 HIVEP2 METTL8 VMP1 LINC01353 LBH PPP2R5C DSE ARHGAP15 CTNNBIP1 MAML2 MBNL1 SCAF11 FAM219A MTMR1 RHOBTB3 OXSR1 DPYSL2 CCDC88C MBOAT7 TRANK1 AC120193.1 L3MBTL3 HDAC9 AL138720.1 PRKCB ZNF608 LHPP ZFAND3 PRKCE SESTD1 AP001636.3 PLCL2 ELP1 EDEM1 MYH9 ARHGAP24 PDXDC1 ELMSAN1 ANK3 FAM172A CIC AP002884.1 FOCAD GNAS AL160408.2 INKA2 CMIP RPS6KA5 CEP120 RAP2A NDRG1 PTPRJ MBP EIPR1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 CHST11 RAD51B LINC01588 RUNX1 LPP BACH2 ARID5B AC016831.7 ANKRD44 ITPKB AC068896.1 CELF2 RMI2 P2RY8 HIVEP2 UBAC2 TNFAIP8 AC010894.3 INPP5D BLK FOXN3 ST6GAL1 KLF13 BCL2 AKAP13 MEF2C AC063949.2 TFEB LDLRAD4 SUSD6 EBF1 SETBP1 ELF1 LINC00598 FAM107B AMPD3 IQSEC1 RFTN1 IKZF1 FLI1 LIPA PRKCB ELMO1 SERTAD2 INPP5A TBC1D5 RASGEF1B LYN SEPT9 PVT1 CIITA ETS1 DOCK10 CCDC69 GRK5 DLEU2 STK10 MBP CCDC88C POU2AF1 CARS2 PPP3CA IKZF3 NEAT1 PLEKHG1 PDE4D LINC02240 UST PALM2-AKAP2 LHFPL2 AUTS2 VOPP1 RIPOR2 CRYBG1 UMAD1 AC079313.2 LRRFIP1 SPTBN1 NIN ST8SIA4 JMJD1C ENTPD1 OSBPL3 PPP1R16B CYTIP PLXNC1 PRKRIP1 PAX5 LBH GNG7 ARHGAP25 CDK14 B4GALT1 OSBPL10 TRABD2A SSPN CAMK2D SLC9A9 PCGF5\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 PVT1 BACH2 IKZF1 TNFAIP8 RUNX1 ETS1 ITPKB LINC01588 NFATC2 ABTB2 MGAT5 RFTN1 RAD51B PLEC ETV6 PREX1 ANKRD44 ACTB BCL9L ZBTB20 AC068896.1 SMAD3 AL390957.1 SEPT9 TSPOAP1 UBAC2 STIM1 MAML2 ZFP36L1 FYN ZMIZ1 UST EBF1 RIPOR2 BCAR3 ATXN1 NEAT1 HOMEZ AC009226.1 SEC22C INPP5D TMEM131L PRKCB NCAPH2 ACOXL NFE2L2 EHD1 TTC33 BCL11A AC016831.7 BCL2 CDC42SE2 SERTAD2 ANKRD33B FOXN3 JMJD1C ARHGEF3 IKZF3 CELF2 STK10 CCDC88C PIP4K2A ECE1 MBNL1 KAT6B ARHGAP26 RREB1 PTK2B LPXN SWAP70 ZC3HAV1 ARID5B RAPGEF1 BCOR OGDH ARHGAP25 TRAF1 BANK1 ARHGAP15 PLXNC1 LPP LDLRAD4 ITPR1 TAB2 TCF4 TNIP1 NUAK2 ST8SIA4 IQSEC1 MBP P2RY8 SEPT11 LINC00598 PDE4B DOCK10 AC069368.1 RFX1 NEMP1 PNKP\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 FOXP1 CIITA RIPOR2 CHST11 RAD51B ETV6 MAML2 ARHGAP25 LPP DNM3 PDE4B CDC42SE2 PIP4K2A TSPOAP1 ARID5B ADAMTSL4 ANKRD44 SETBP1 SAMD4A RMI2 IQSEC1 BANK1 LINC01588 FOXN3 NFATC2 HIVEP2 DHTKD1 DOCK10 CELF2 MAST4 KLF13 MGAT5 ST3GAL1 BCL2 DLGAP1 JMJD1C STIM1 GRK5 AKAP13 AC016831.7 CSGALNACT1 FYN RASSF3 GFOD1 DNAH2 ELMO1 ZBTB20 TNFAIP8 ECE1 RASGEF1B NLRC5 INPP5D CD82 SMAD7 AC008764.1 LHFPL2 ENTPD1 KMT2C NSMCE2 UBAC2 ARHGAP24 SWAP70 ATG5 WWOX CYTH1 PAX5 MAP3K3 XXYLT1 MAPK1 LAPTM5 AMPD3 LPIN1 TUBA4A SLC43A2 STK17B GNG7 AP000424.1 CFLAR IKZF3 STAMBPL1 AL139383.1 ANKRD33B AFF3 HOOK2 CLEC16A SSPN RABGAP1L DTNB ANKRD11 RNF4 MYO5A FAM107B KLC2 BLK ARHGAP26 RAPGEF1 LIPA PPP2R5C PRKCE\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RIPOR2 RUNX1 LDLRAD4 FOXP1 ADARB2 AP000787.1 ZBTB20 HIVEP3 ITPKB TSPOAP1 LIPA GRK5 DLEU2 STK10 C16ORF74 EBF1 RAB11FIP4 TGFBR2 AMPD3 ZC3H12D MOB3B UST VOPP1 CRYBG1 FLI1 PLEKHA2 NEAT1 MDFIC AC063949.2 PTPRJ MAD1L1 TG ETV6 CLEC16A PIP4K2A KLF13 ST6GAL1 DTNB DRAM1 P2RY8 AC109454.3 FAM107B TCF4 COTL1 SHISAL2A XXYLT1 PLSCR2 LBH MSI2 IQGAP2 RASSF2 AC010894.3 PLAGL1 CD82 POU2AF1 ARSG SH3GL1 ST3GAL1 PPP2R5C NRROS AC016831.7 CARS2 ECE1 DNM3 BCAS4 PDE4B SKI IVNS1ABP PCGF5 GALNT2 TMEM131L STK17B HIVEP2 CSK UTRN HPCAL1 PIEZO1 ENTPD1 ELOVL5 ITPR1 PTPRG AKAP13 MGAT5 CASP8 ARID5B C7ORF50 CCDC69 ITPR2 GPCPD1 AC093423.3 CABLES1 AC005258.1 SEPT9 NCK2 RERE ACSL1 RIPOR1 SMIM14 PXK N4BP3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 IKZF1 ANKRD44 ATXN1 LINC01588 RIPOR2 FYN UBAC2 CELF2 CHST11 P2RY8 RFTN1 KDM2B BCL2 ARID5B MTSS1 RUNX1 RAD51B TNFAIP8 ARHGAP25 ETS1 AC008014.1 MAML2 IKZF3 PVT1 AKNA CDKN1B ATG5 PPP3CA CARS2 PLXNC1 AC016831.7 UMAD1 PIP4K2A AC022182.1 HMGB1 DOCK10 RASSF3 LINC00598 TLE4 RARA LPP ECE1 SLC38A1 MBP SH3KBP1 ARHGEF3 LINC01185 MEF2C AC063949.2 TMEM131L KLF13 CMIP HIVEP2 AP000787.1 ASAP1 TBC1D5 ETV6 PTK2B ARID1B BACH2 EBF1 WWC3 FOXN3 LAPTM5 FAM107B DLGAP1 AP000311.1 PDE4D ACOXL TGFBR2 C15ORF53 PAX5 TMSB4X AL359736.1 ELMO1 ZBTB20 CXXC5 PTPRC SMAD3 IFNGR2 PCED1B ARHGAP26 AC084200.1 MTO1 RAPGEF1 MAP3K5 PLCG2 FOXO1 NEMP1 STIM2 ARHGAP15 ZDHHC14 TPD52 AC009226.1 AHR LINC01215 ADAM19 LINC02240 ATP8A1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ANKRD44 SSPN RMI2 SERTAD2 ANKRD33B ELMO1 SGMS1 TGFBR2 INPP5D CIITA ARID5B EBF1 CDC42SE2 DUSP22 CPOX GRK5 HIVEP2 DTNB MAML2 AP000311.1 PCED1B HIPK2 NLRC5 DNM3 ETV6 TCF4 RAD51B SETBP1 OSBPL10 FYN PVT1 ARMH4 IL16 MGAT5 ANKMY1 UMAD1 AKAP13 UBXN11 PLXNC1 ASB2 PALM2-AKAP2 CFLAR AHR VOPP1 FAM107B BANK1 LINC01126 TRIM8 LINC02240 SEMA4D AC010542.3 ARHGAP25 IKZF1 JMJD1C FOXN3 PRKRIP1 LPP FGGY ZEB2 RFX3 MYO5C AC008691.1 NDUFAF6 TAOK3 AC009126.1 DSE ARID3A UBAC2 PPP3CA BLK HMGB1 OSBPL3 LINC00877 CARS2 LIPA AC008764.1 FOXP1 CYTIP MBNL1 NEMP1 KLF13 CMTM7 SSH2 KSR1 DAAM1 SEPT9 RERE RAB11FIP1 RNF170 CXXC5 MTSS1 DAD1 SEPT6 ARHGAP15 LINC01934 NFATC2 MIR3681HG POU2AF1 CCDC88C STK10\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CD82 COMMD10 CLASP1 MYO5A BRWD3 UBE2D2 TSPAN14 LINC01003 HINT3 SLC25A12 SSPN MYL7 RIPOR2 ZFAND1 TMEM131L JAZF1 PLPP1 TMED7-TICAM2 ORC2 GUCY1B1 RAP1A NRGN AC069368.1 MIPEP USP37 WDSUB1 ZC3H8 PGGT1B FAM184B UBE2J1 ZDHHC17 ARHGAP26 L3HYPDH NHSL1 CEP128 DOCK2 FCRL4 AL136961.1 CFAP58 GSAP MAN1A1 BCL2L2-PABPN1 AKNA CPNE8 SEL1L MAT2B AC117834.1 TMEM189-UBE2V1 TCTN1 AL354732.1 PCMTD1 NEK7 PPM1B PDZD8 AL357060.1 HERC4 SPINK2 PNISR ODC1 AC005618.1 LINC01816 AL357078.1 FBXL5 SPATA24 CCDC74A GRAMD4 TMEM131 ABCB4 AL606489.1 AC073283.3 HDAC3 ANK1 SETBP1 RAB6A FBXL17 SHPRH DPY19L4 MRPS27 TGM5 MXD3 ANXA6 EFHC1 AJ009632.2 AC105227.1 AC116366.3 XPNPEP1 MDC1 ASXL1 ETS1 PANK1 MYLK4 CNOT1 PGRMC2 LIN54 HIF1A-AS1 CCDC141 LY86-AS1 ARHGAP15 RFTN1 ARL14EP\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 RAD51B MAML2 UBALD2 RPTOR POU2F2 LPP PHF19 TCF4 PVT1 LINC01185 ARHGAP24 AC016831.7 PDE4B ARHGAP25 IL21R IL4R KAT2B TBC1D5 RERE ETV6 CIITA NEMP1 LINC01588 ANKRD44 GALNT2 RFTN1 EHD4 LPCAT1 PRICKLE1 LBH LAPTM5 TRAF1 C1ORF112 NEDD9 UBAC2 RUNX1 RGS3 VMP1 GSE1 AHR MIR155HG STK10 ST6GALNAC3 IL2RA ECE1 KLF10 RPL23A AFF1 BACH2 RASSF3 BANK1 CSGALNACT1 CDC42SE2 CLK1 SEPT6 ARID4B TGFBR2 AC022217.3 TRAJ28 PLEC MAML3 AC008105.3 CIC MREG CPED1 PLXNC1 FOXN3 DLEU2 IL15RA SKI MTMR1 JMJD1C LIPA KANSL1 ZC3H3 HIVEP3 CBLB AC034114.2 MCOLN2 AFF3 CHST11 VIM-AS1 ZNF365 LRCH1 LINC00598 RAB11FIP1 PTK2B KCNC4 SPRED2 IKZF1 NEK8 PRDM8 CELF2 KDM7A AHNAK ALCAM RARA ARMH4 VRK2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LINC01588 RUNX1 UBAC2 FOXP1 CDC42SE2 RAD51B MBP SEPT9 AC068896.1 ARHGAP26 SEMA4D TNFAIP8 GRK5 CARS2 PIP4K2A RIPOR2 ARHGEF3 MAML2 PPP2R5C HIVEP2 ETS1 ARHGAP25 NFATC2 AL390957.1 ARHGAP15 ANKRD44 BCL2 AKAP13 FYN CBLB KLF13 INPP4A RHOH CD82 AKNA ATXN1 ST3GAL1 MAP3K3 STIM2 NCK2 MAP4K4 HECW2 ST8SIA4 G3BP2 AC009126.1 KANSL1 PATL2 DLEU2 NSMCE1 LIPA RB1 XYLT1 CELF2 NCOA2 ASAP1 TRANK1 FOXN3 COTL1 RNF38 PPP1R10 SMARCA2 STK10 IRF2 ARID5B RHOF MGAT5 CD96 CYTIP JMJD1C SIN3A STARD3NL RFTN1 CDH23 SIAH2 LPP IFNG-AS1 UST CHST11 PVT1 ALPK2 PRKCE ZBTB20 SIK3 PCAT1 PITPNC1 C7ORF50 SMAD3 MCM9 MXI1 PER1 EVL ANK3 CCNG2 LINC00402 ARRDC3 GSK3B KLF12 ARID1B PRKCH FRYL\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC009126.1 UMAD1 FAM107B CDC42SE2 LINC01754 ASAP1 TNFAIP8 TRIO ARID5B ARHGAP24 SETBP1 CD44 COBLL1 CMSS1 MIR29B2CHG STPG1 KLF13 HIST1H1E LINC00598 ENTPD1 DRAM1 GABPB1 NOTCH1 RUNX1 PARP1 CAPN15 MACC1 GRB2 TPD52 TNFSF10 MAP3K14 PREX1 PTK2B AC120024.1 PLEKHF2 ARHGAP25 PRKCB AP3B1 PIK3AP1 MGAT5 ZCCHC2 KDM2B CASP9 ELF1 LRRC8B SUMF1 TG CSGALNACT1 ITPR1 DOCK10 IKZF1 ANK3 ANKRD44 ARHGAP15 ABHD15-AS1 AKAP13 ITPR2 RSPH14 FOXN3 ANP32A SLC12A6 PVT1 LRRFIP1 AC016831.7 GNG2 IKZF3 ZNF627 ADD3 SLMAP SMU1 TCF4 MDFIC CCDC141 RFTN1 LRCH1 CCND3 AC120193.1 ABHD14B ZDHHC5 MYO5C SCAMP4 AC012506.4 AL390957.1 NDUFAF6 ATP8A1 FOXP1 GDE1 ZNF3 NUDT2 SEC23B GNL1 SPIB LINC01185 ZBTB16 METTL23 OSBP LMTK2 DAPP1 STAG3 ARAP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 AC010894.3 NR4A2 FOXN3 IL19 CD82 GRK5 PARP8 LINC01126 AL136368.1 PRKCE STK24 AC068898.1 BCL2 TNRC6B LDLRAD4 AL390957.1 KCNQ5 RBM47 RMI2 VAV3 TRPS1 HIVEP2 MTSS1 PPP2R5C OSBPL10 TLE1 CCDC69 FBXO30 ZNF516 SP1 NCOR2 TRIO RNF111 CFLAR SERTAD2 ARHGAP24 RASGEF1B ZNF608 ACAA1 TNFAIP8 LPP FGFR1OP ARHGAP15 PRKCB RIPOR2 JADE2 CXXC5 AL356417.3 ZC3H12D TRA2B NPAT STIM1 MARK4 GRK6 RPS6KA2 ZPBP DDAH2 PATL2 PDXK WWOX ANKRD33B IKZF2 PRKCD CHD1 SPTBN1 PLEC CMTM7 SLC6A6 PIP5K1B TBC1D2B PABPC1 PLEK AC099524.1 POU2F2 SLC2A1 ARID3B MARCH3 MAP2K3 LYN PICALM ST6GAL1 AL359710.1 PNISR VOPP1 ACSL4 LINC01588 THADA RUNX1 SGMS1 CLEC16A ASAP3 PREX1 UPP1 CCDC12 ARMH4 MCOLN2 FCMR IQSEC1 NFKBIZ\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AL359736.1 FOXP1 ANKRD44 FAM107B BCL2 ARHGAP15 AUTS2 CELF2 UBAC2 STIM1 PIP4K2A RUNX1 MIR3681HG TSPOAP1 LIPA MAML2 AKNA CYTIP PDE4B LPCAT1 HIVEP2 JARID2 IL2RA ARID5B TNFAIP8 RIN3 PFKFB3 LPP ETV6 RASGEF1B LDLRAD4 CMTM7 S1PR1 ST6GAL1 MFHAS1 RMI2 AC016831.7 MOB3A ARHGAP25 ETS1 LINC01126 LINC00598 CAMK2D PRKCE CHST11 EML6 ARNTL TG CARS2 JMJD1C CD82 RUBCN FYB1 ERCC1 KLF9 CDK13 U2AF2 AC063949.2 SETBP1 SLC9A9 FOXP4-AS1 TGFBR2 MBNL1 FAM117A TPK1 GFM1 ABHD15-AS1 CBLB AC009126.1 RPTOR CPEB3 CDH23 ELF4 CCDC88C FOXN3 AKAP13 TLE4 PIK3AP1 SH3KBP1 TAOK3 RALGAPA2 CFLAR ADAM19 ITPK1 IQGAP2 CD74 IKZF1 ZNF487 EPSTI1 IL10RA IRF2 PATL2 CYTH1 DLG4 LIX1-AS1 CACUL1 ST3GAL1 PLCG2 MBOAT7 HDAC7\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: INTS6 DLEU2 TNFAIP8 UMAD1 ZCCHC2 SH3KBP1 AC068896.1 BCL11A TRMT10A MAML2 AIM2 MBNL2 KDM7A BACH2 MIR3681HG KLF13 BANK1 MTPN PMAIP1 ZBTB20 FAM49A AL157935.2 IL21R PRKCE SPATS2L ANKRD33B RASGEF1B AL031599.1 CHST11 BCL2 PHKB TGDS NFKB1 INTS4 AL355315.1 RPS6KC1 PSAP WNK1 SLC4A2 UTRN ZMIZ2 PTPRE TMEM189-UBE2V1 FOXO1 KLF6 SETBP1 FOXO3 RPL22L1 PASK MIR4435-2HG INO80B RBMS1 ZFP36L1 WDR12 TPD52 MBNL1 TTC39C IFNGR2 IDI1 PDE4B ZNF630 CCDC148 ECI2 APBB3 RNF4 RFX3 AMZ1 ARID1A MIR29B2CHG ARID1B AC021678.2 COL9A3 RECQL ZNF558 TAPT1 FRS2 ATP10D INTS9 SH3GL1 GRK5 PLEKHA7 RHOBTB3 PALM2-AKAP2 IRF3 AC016831.7 TBCCD1 SCOC SPTBN1 AC009226.1 AL137145.2 SYS1 NCK2 PRKCH AC097713.1 JADE2 MOB1B AP000311.1 NT5DC1 SPTLC2 MSMO1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC068896.1 RAD51B BCL2 P2RY8 FOXN3 BACH2 PALM2-AKAP2 RUNX1 ARHGAP26 PCAT1 IQSEC1 ARHGAP24 LINC01135 TNFAIP8 AC009126.1 DUSP22 INPP5A MAD1L1 LPP FRY HDAC9 SLC38A1 FLI1 TBC1D22A ARHGAP25 LINC01588 MEF2C RIPOR2 UST GDI2 ARID5B SETD3 PVT1 ELF1 UGCG ZBTB17 NINJ2 SNX9 FOXP1 PTPRC LCOR TSPOAP1 SH2D3C RPL13A CROCC HDAC7 SLC35B2 GAS7 CCDC88C RAPGEF1 RMI2 PTPN1 BLK AL357060.1 ABTB2 NFKB1 STK17B COA1 LINC01484 TGFBR2 LCP1 CFLAR TCF4 CELF2 HECW2 LINC00598 AL353616.2 CDC42SE2 EBF1 AC007991.3 PLEKHG1 AC084200.1 EHMT1 CCDC12 RREB1 CDH23 HOOK2 CDK19 PAX5 SETD2 PARP14 AL136962.1 MAP3K5 NDUFAF6 TIGIT XYLT1 DLEU2 AC116366.3 RARA TMEM131L LDLRAD4 UMAD1 PARP15 GNG2 TMIGD3 MGAT5 DUS2 PRKCB CARS2 PFKFB3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 RUNX1 HIVEP2 RAD51B ARID5B INPP5A MTSS1 DOCK10 FOXN3 LPP AL390957.1 ARHGAP26 TCF4 ETV6 XXYLT1 PLEKHA2 XYLT1 MAML2 PDE4B IKZF1 ARHGAP15 ANKRD44 SEPT9 PRKCE MGAT5 ST6GAL1 PPP1R16B TNFAIP8 ARHGAP25 CMTM7 RMI2 UBAC2 NR3C1 ZNF608 PRKCB PPP3CA PVT1 LDLRAD4 SERTAD2 RIN3 LRRFIP1 GRK5 BACH2 PCGF5 LBH LFNG SLC39A10 RIPOR2 NCK2 ZDHHC14 P2RY8 CBLB JMJD1C ST8SIA4 AKNA RASGEF1B MAP3K5 NR4A2 BACH1 SETBP1 DNMT3A SGMS1 LIPA CYTIP MBNL1 DUSP22 INPP5D UMAD1 AUTS2 GNG2 SH3BP5 STIM2 SAMD4A CHST11 VOPP1 ZBTB20 CAMK2D TNIP1 RAPGEF1 ETS1 ARHGAP24 CELF2 ADARB2 CSGALNACT1 AKAP13 CDK14 WDFY1 ANK3 BCL2 HECW2 MEF2C TG AC008124.1 AC116366.3 SOD2 AFF1 ELF1 TGFBR2 DRAM1 AL357060.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATXN1 RAD51B RUNX1 FOXP1 FOXN3 PDE4B CYTIP RASGEF1B ANKRD44 IKZF1 PCAT1 LPP ARHGAP25 AL390957.1 RIPOR2 ETS1 TBC1D5 SLC35B2 BLK MTSS1 EBF1 ATP8A1 AC016831.7 ETV6 HDAC9 MXI1 ATG5 PATL2 HOOK2 JARID2 DTNB CRYBG1 ARID5B PHF21A CELF2 ST6GAL1 LINC01588 ABTB2 CCND3 C1ORF112 OSBPL10 TNFAIP8 AC068896.1 TLR1 SGK1 TTC33 IQSEC1 NCK2 IKZF3 PACS1 MAML2 MDFIC ELF1 TMEM243 VCPIP1 KDM2B PARP8 ECE1 UMAD1 BCL2 SERTAD2 NIN POU2AF1 BACH2 BTLA RASSF3 PAX5 ITPKB CDCA7L UTRN HSP90AB1 HECW2 FOXO1 RMI2 AC063949.2 SETBP1 UBAC2 LPIN1 TMIGD3 CIITA CCDC88C DUSP22 BCL11A PLEKHG1 TGFBR2 PALM2-AKAP2 ASAP1 CDKN1B RARA SPAG1 IRF8 AC084200.1 VAV2 TMEM131L GTF2A1 PVT1 KAT2B LCP1 DOCK10 LINC02240\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARID5B MIR3681HG ST6GAL1 CPOX PALM2-AKAP2 HNRNPA2B1 ISG20 LIPA PCGF5 PVT1 SGMS1 BHLHE40-AS1 BCL2 INPP5A DPYSL2 JMJD1C AKAP13 AHR CELF2 CD82 AKNA TM9SF2 RIPOR2 HIVEP2 AC016831.7 JADE1 CHST11 RFTN1 CDC42SE2 ARHGAP25 RMI2 AC069368.1 ATXN7 UMAD1 SNTB1 COA1 RARA PCAT1 CCDC88C SAMD4A AC013270.1 ZMIZ1 ATP8A1 TTC33 DOCK10 BANK1 PDE4D LDLRAD4 PIP4K2A FLI1 DNM3 RAP2A POU2F1 AC008691.1 AP1S3 STK17B RAD51B PDE4B CIITA ADAM19 LGMN ATXN1 CNDP2 C15ORF53 BACH2 OSBPL10 UBAC2 FSD2 LINC01588 PSMA1 CDKN1B IKZF3 SERTAD2 DGLUCY UBP1 VOPP1 TSPOAP1 SSPN MACC1 AC022182.1 EBF1 TMEM64 GATAD2A P2RY8 EEPD1 GSK3B CRADD DSE CLDND1 ANKRD33B ATP6V1E2 AC084026.2 SUSD6 DGKD SEC22C AP000787.1 TGFBR2 FOXN2 ACTR3 CRYBG1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 PRKCH RIPOR2 LINC01588 UBAC2 RUNX1 HDAC4 CELF2 AC068896.1 IKZF1 HIVEP3 AC016831.7 KLF13 CCDC88C MBP TNFAIP8 ATXN1 ETS1 RASSF3 SEPT9 AKNA ANKRD44 ITPKB ARHGEF3 CDC42SE2 PVT1 STK10 LINC00598 DRAIC HIVEP2 VMP1 ZFP36L1 CD82 PDE4B RASGEF1B VOPP1 UTRN ZNRF2 ATG5 BCL2 FGD3 ST3GAL1 TMEM131L BCL11B HECA RNF216 AC010894.3 MYH9 OGDH CFLAR ELMO1 FAM107B FAM49B CCDC12 AL357060.1 AL359736.1 TBC1D5 AP000787.1 GNG2 GRK5 OSBPL3 RHOH NCK2 SUSD6 TG LPP RPS6KA2 SEMA4D PJA2 NFATC2 JMJD1C ARID5B RERE SERINC5 GNL1 MNT RAD51B PPP1R16B PLEC CYTIP PTPRC ITPR1 TGFBR2 ZMIZ1 TLDC1 TRABD2A S1PR1 PIP4K2A IQSEC1 PITPNC1 RAB11FIP4 TSPAN14 FRYL MGAT5 ARID1B IL7R AC009126.1 GRK6 AC008764.1 SIK3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LPP FOXP1 PAX5 GRK5 BCL2 CELF2 XXYLT1 CD83 RUNX1 AC016831.7 AC068896.1 CCR7 INPP5D HECW2 PALM2-AKAP2 HIVEP2 MAML2 WDR27 ANKRD44 LINC01588 CARS2 RAB11FIP4 AKAP13 IKZF1 ARID5B CD82 AC084200.1 MAML3 LIPA CBLB BLK ELMSAN1 SGMS1 LBH DGKD AC022182.1 CHST11 AKNA RAD51B FOXN3 FLI1 MGAT5 NCK2 CCDC88C MARF1 PLEKHA2 HDAC4 RASGRP3 CDK14 STK10 RBMS1 SH3KBP1 CXXC5 PDE4B KLF9 ITPKB PIK3AP1 ARHGAP25 AC080129.1 POU2AF1 SERTAD2 RERE C1ORF112 HOMEZ ETS1 KLF6 SIPA1L3 MYH9 TCF4 AL159163.1 EPS15L1 EBF1 GALNT6 LRRFIP1 BCL11A BACH2 RASSF3 PLCG2 FAM107B SETBP1 RFTN1 CROCC OSBPL3 CAMK2D ZC3H12D RIPOR1 CYTIP ZCCHC7 UBAC2 ZBTB16 UTRN SEPT9 ARID4B ARHGAP31 IKZF3 NUAK2 AP000424.1 LFNG LDLRAD4 IL16\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 CHST11 ITPKB CBLB RUNX1 VAV3 IQSEC1 STK17B AKAP13 RAD51B PVT1 STIM1 FOXN3 CASP8 BCL2 PAX5 PRKCB RHOF TNFAIP8 INPP5D ARHGAP15 NEAT1 NCK2 ETS1 RIN3 DNM3 CRYBG1 RERE OSBPL3 AC068896.1 B4GALT1 AL359710.1 EBF1 BLK ST3GAL2 HIVEP2 TRAK1 ATXN1 POU2AF1 JAZF1 AMPD3 BANK1 LINC00598 PALM2-AKAP2 SLC9A9 IRF2 PLCG2 C8ORF37-AS1 NFE2L2 TGFBR1 RMI2 UST AHNAK PREX1 JARID2 PLXNC1 CYTIP CCDC69 ARHGAP25 ANKRD44 PPP1R16B WDR12 TSPOAP1 PRKAG2 ETV6 NEMP1 AL390957.1 MACC1 UBAC2 BCOR TTC33 MTSS1 ZBTB20 SPTBN1 TBC1D2B PRKCE AC016831.7 CD82 MAML2 XYLT1 AL109955.1 TRAFD1 YWHAZ SEC22C AC063949.2 SSPN OPN3 GSE1 XXYLT1 KDM2B SEPT9 STAG2 LINC01126 RASGEF1B DLEU2 AL159163.1 RNASE4 HOMEZ ST6GAL1 SWAP70\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 RAD51B RMI2 LPP RERE AC010894.3 ETS1 ANKRD44 BACH2 MTSS1 BCAR3 ARID5B JARID2 RIPOR2 PALM2-AKAP2 MIA2 KDM2B IQGAP2 PIK3C2B CELF2 SETBP1 DUSP22 TBC1D9 MEF2C-AS1 CBLB LCP1 RASSF3 C1ORF112 MAP3K3 P2RY8 CD82 FOXN3 INPP5D IKZF1 SERTAD2 SGK1 ZDHHC14 ARID1B UMAD1 ATP8A1 TSPOAP1 TCF4 UBAC2 TG CDV3 EHD1 CYTIP VAV3 DLEU2 USP12 IL2RA STT3B CDC42SE2 USP6NL LRIG1 RFTN1 DOCK10 AC016831.7 ARHGAP25 BCL11A PCAT1 SLC1A2 ATP6V1E2 MYCBP2 BLK GNG7 HMGB1 LYN HOOK2 PNPLA8 AKAP13 LINC01588 ETV6 GLS UTRN AL136368.1 PVT1 SLAMF1 UBE2D3 ESR2 HDAC9 PLEKHA2 SMAD3 ARAP1 SLC6A6 RGL1 RHOH TRIO TNFAIP8 CHST11 RALGDS PATL2 IKZF2 EPS15L1 CXXC5 MIR3681HG DOCK9 TTC33 TBC1D5 SWAP70\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CLEC16A FOXP1 ZBTB20 HHAT HIVEP2 PLEKHG1 CIITA BLK ASAP1 ZDHHC14 SH3BP5 AC008014.1 EBF1 ITPKB TIPARP AC063949.2 RMI2 WWOX TMEM14B UTRN IQSEC1 PITPNM2 SNX9 SGK1 PDE4D C1ORF112 RNF44 CELF2 SYBU PLCL2 SELENOF TMEM131L EDEM1 AP000424.1 MACROD2 ITPR2 AC009126.1 TNIP1 KSR1 CCDC107 MTSS1 NINJ2 AL136962.1 BACH2 NFATC2 GNG5 DAZAP2 PPP2R5A CEMIP2 TFEB PRKCB CHST11 ATP2B1 TGFBR2 ADRB2 MARCH3 RASSF2 EFHB AL591885.1 COPS4 PPM1B AC004241.1 LMO2 AC007375.2 RPS6KA2 CXXC5 LY86-AS1 P2RY8 VRK2 TSPOAP1 PBX2 PRKAG2 ZC3H12D LMO4 MED12L RERE CYTIP LYST MEF2C ACSS1 UST ABLIM1 SACS C16ORF72 MTF2 DIP2B AFF1 UBE2E1 GNRH2 PNPLA8 KIF21B AL138720.1 ATXN1 CHD9 ST6GAL1 SLC22A23 CMTM7 JARID2 MOB3B AMN1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 UBAC2 IQSEC1 ARID5B TSPOAP1 FOXN3 BACH2 RAD51B RUNX1 AC068896.1 CD82 LINC01588 CARS2 TNFAIP8 BCL2 LINC00598 LPP BLK ITPKB FAM107B ARHGAP25 ETS1 PAX5 PATL2 RAPGEF1 DOCK10 BCAR3 UMAD1 STK10 AC016831.7 GRK5 ZFP36L1 AMPD3 IKZF1 JARID2 ZMIZ1 PALM2-AKAP2 AKNA ARHGAP26 AKAP13 XYLT1 CHST11 EBF1 RMI2 NLRC5 B4GALT1 HIVEP3 AL138720.1 ANKRD44 EVL ATXN1 GAS7 SMAD3 LYN ST8SIA4 LIPA CELF2 INPP5D SETBP1 IL21R RIPOR2 TRIO LBH ST6GAL1 AC009126.1 ATG5 IKZF3 HDAC9 UST LINC02240 AC116366.3 CLEC16A PRKCB ABTB2 CCDC69 ARHGAP24 MEF2C WNT10A P2RY8 SSPN MBP RIPOR1 POU2AF1 NR4A2 CDK14 MAML2 PDE4B GNG7 WDFY1 CD83 SNX9 FOXO1 RFTN1 VOPP1 ANKRD33B HSPD1 UBE2D3 ELF1 LINC01185 AP000311.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 FOXP1 LINC01588 UBAC2 ANKRD44 FAM107B PDE4D P2RY8 LINC00598 CHST11 ETS1 SEPT9 GRK5 SETBP1 KLF13 DLGAP1 SMAD3 MYH9 ARHGAP24 TSPOAP1 TNFAIP8 RPS6KA2 LINC01126 AKNA GALNT2 TBC1D5 STIM1 CARS2 STK10 ZBTB20 SH3KBP1 RUNX3 RMI2 PREX1 LPP MAML2 ARHGAP25 ZFP36L1 AC010894.3 CELF2 ARID5B FOXN3 AC016831.7 NCK2 PPP3CA CRYBG1 PTPRC RHOG HLA-DMA B4GALT1 C15ORF53 SSPN FYN SPIDR SUPT3H CCDC88C AMPD3 PLXNC1 JMJD1C ST3GAL1 AC063949.2 ST6GAL1 MIR3681HG PDE4B MGAT5 RAD51B ZNF365 AC068896.1 SLC2A1 BLK BHLHE40-AS1 HIVEP2 HDAC4 TRABD2A WDFY2 LINC01135 MSI2 ARID1B ZDHHC14 ETV6 PLCL2 LIPA SAMSN1 ELMO1 SERINC5 TRPS1 ANK3 LCP2 ATOX1 GDI2 ATXN1 PLEKHA2 SLC6A6 HIVEP3 INPP5D HINT1 ST8SIA4 CMIP PAX5 NEDD9\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 ARID5B CELF2 MTSS1 FOXP1 TGFBR2 LPP AC068896.1 AKAP13 TNFAIP8 BCL2 SMAD3 ARHGAP24 ETS1 BACH2 RUBCN XXYLT1 MEF2C-AS1 PRKCE MAML2 PDE4B IQSEC1 UBAC2 FAM107B HDAC9 ARHGAP25 TRANK1 P2RY8 ANKRD44 CXCR4 IKZF1 ADAM19 MIR3681HG TTC33 CYTIP RAD51B AC063949.2 GRK5 FOXN3 LINC00598 MCTP2 NLRC5 SETBP1 CYTH1 MAML3 MEF2C FLI1 LINC01126 HIVEP3 LINC01588 ARHGAP15 EBF1 TG NR3C1 AMZ1 PBX3 MARCH1 IQGAP2 HOOK2 RAPGEF1 PCAT1 ANK3 PRKCH NCK2 HECA SHISAL2A DENND1A DLEU2 MNT RFTN1 LIPA JMJD1C SEPT9 HIVEP2 ELMO1 ITGA4 AL035530.2 AC016831.7 ZNF395 LHPP AKNA INPP5D DOCK10 XYLT1 AC007384.1 BANK1 ZCCHC7 AC018647.1 PTK2B PCGF5 RASGEF1B LDLRAD4 MGAT5 PNPLA8 ZNF365 SGMS1 SSPN SIPA1L3 RASGRP3 ATXN7\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 FOXP1 AC068896.1 KLF13 MBP RAD51B CHST11 ETV6 SETBP1 BCL2 LINC01588 RIPOR2 LPP CD82 ARID5B CARS2 CELF2 TGFBR2 HIVEP2 BACH2 BCL11A PRKAG2 UBAC2 AC016831.7 FAM107B FYN PTK2B NEAT1 LINC00598 RASGEF1B UST GRK5 MGAT5 ZFP36L1 RMI2 CCR7 MAML2 HDAC4 PAX5 TMEM131L FOXN3 SMAD3 SEPT9 SERTAD2 ELMSAN1 ANKRD44 INPP5D CD83 DOCK10 VOPP1 DUSP22 CDH23 ARHGAP25 AKAP13 ITPKB ST6GAL1 POU2AF1 CCND3 TCF4 UMAD1 XYLT1 B4GALT1 AC009126.1 CIITA ARID1B TSPOAP1 MTSS1 IKZF1 PLEKHG1 ETS1 BLK LRCH1 ECE1 LRRFIP1 PTPRJ DLEU2 PLXNC1 NFATC2 SEMA4D KDM2B LYN CDKN1B CAMK2D AL359710.1 UTRN IQSEC1 AKNA CYTIP ADARB2 GDI2 OSBPL3 TNFAIP8 JARID2 PLCG2 HIVEP3 SLC2A1 PRKCE NCOR2 PVT1 PCAT1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CCDC69 XYLT1 POU2F2 IFNGR2 TNIP1 PPP2R5C TNFAIP8 RUNX1 ACIN1 TSPOAP1 PIP4K2A PDE4B HMGB1 SMIM12 AMZ2 CTIF CXCR4 ECE1 ASAP1 KANSL1 AC063949.2 UBQLN4 LPP ATG5 AC068724.3 AC079610.1 PLAC8 MTO1 ANKRD44 ICAM2 LIPA ERI2 RPRD2 RASSF5 CHD9 RMI2 CAPN10 AAMP UBE2L6 NFKB1 ARID5B CREB5 PECAM1 FOXP1 METTL6 DLEU2 XXYLT1 KLF13 CAMK2D CMTM7 UST JADE2 LINC02391 CRYBG1 TRAK1 TMEM229B LINC00598 KDM7A RERE TBL1Y AC005091.1 ELOC C18ORF63 TTC32 EIF3H RAPGEF1 AC006449.6 AC011498.1 PLEKHM2 SDR42E2 IGHV3-33-2 RRP1 RBL1 BCL6 WWC3 EED GASAL1 IMMT TTI2 PARS2 MIR29B2CHG PLCD1 SLC6A6 PTPN1 PARVG DIP2C PABPC1 EMC9 BBX CBLB ADAT2 RAP2A RPS6KA5 ATXN1L CLEC2D ATP6AP1 XPNPEP1 GLRX5 SCAF11 TEC\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 EBF1 TNFAIP8 RAD51B OSBPL3 BCL2 IQSEC1 TSPOAP1 SEPT9 IKZF1 CCR7 CELF2 SETBP1 ETV6 PCAT1 ETS1 ATP13A1 FAM107B GNG2 ANKRD33B RMI2 RIPOR2 NLRC5 CCDC88C ZFP36L1 LINC00598 AC063949.2 ST6GAL1 ADAM19 STK10 LINC01588 MSI2 P2RY8 PLCG2 GLB1 CXCR4 CMTM7 TGFBR2 GALNT2 CSGALNACT1 MAP3K5 GNG7 AFF1 PATL2 MGAT5 EPC1 PALM2-AKAP2 RUNX1 CYTIP AKAP13 RASSF3 LY86-AS1 AC009126.1 KANK1 DSE TNS3 CHST11 PRKCB ZNRF2 PAX5 AC011773.4 RAI1 AC016831.7 ARHGAP24 CDKN1B B4GALT1 PIK3AP1 LBH PXK PIP4K2A BACH2 DNM3 FOXO1 MTSS1 ECE1 FGFR1OP MED12L TPD52 RABEP2 AC022182.1 NDUFAF6 MCTP2 CLEC16A SLC37A1 ITPKB VMP1 AL353616.2 PMAIP1 POU2AF1 ITPR1 RHBDD1 ACTR3 NDUFV2 NEAT1 TCF4 LRRC8C-DT PDE4B RIN3 MBP MAST4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAD51B CHST11 FOXP1 AC068896.1 RIPOR2 ANKRD44 MGAT5 LINC00598 ETS1 RFTN1 PTPRJ AC016831.7 ATG5 MEF2C BCL2 AMPD3 FOXN3 LPP SLC9A9 GAS7 INPP5D FAM107B ARHGAP15 BACH2 RERE UTRN IL16 PCAT1 GALNT2 KAT6B MEF2C-AS1 CLEC16A HOOK2 JARID2 CCDC88C RASGEF1B AFF1 CARS2 BCOR UBAC2 ARHGAP26 MAML2 TRIO AC009126.1 RIN3 TBC1D5 PALM2-AKAP2 BANK1 JMJD1C ELMO1 METTL8 PRKCE SEPT9 SNX9 L3MBTL3 C1ORF112 TFEB CYTIP CCR7 ZDHHC14 RFX3 TNFAIP8 ZBTB20 HDAC4 B4GALT1 BLK AL390957.1 LY86-AS1 ST3GAL1 ABCG1 PLXNC1 OSBPL3 ARID1B SETBP1 TRIM14 COA1 SLC2A1 ARHGAP24 STK17B TSPOAP1 CHCHD6 PCDH9 PDE4B AGO2 LRRFIP1 ITPR1 AKNA LINC01588 JADE2 HLA-DMA ELMSAN1 SKIL MCTP2 REV3L HECW2 ITPKB ARID4B AL162377.3 TPD52 AC008629.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAD51B BCL2 BACH2 TNFAIP8 LINC01588 HIVEP2 FOXP1 ATXN1 HIVEP3 RAPGEF1 ARID5B ACOXL AKAP13 ARID1B ETS1 NCOA7 SERTAD2 RFTN1 SLC38A1 FOXN3 ETV6 SEPT9 PIP4K2A RASGEF1B AC068896.1 MAML2 RUNX1 IKZF1 SPTBN1 SUSD6 FLI1 AHR RERE ZFP36L1 RASSF3 CELF2 AKNA MIR3681HG GRK5 BCAR3 RIN3 CHST11 MGAT5 MBP LPIN2 CD82 AL359710.1 UST ANKRD44 PAG1 UBASH3B ITPKB DNAH2 FAM107B GNG7 CCDC9 ELF1 PLEC LDLRAD4 LINC00649 SETBP1 RIPOR2 LBH ARHGAP26 PTPRJ LINC00598 MIR155HG RMI2 EBF1 CARS2 ADK LRCH1 ITK CDC42SE2 INPP5D HDAC4 LIPA ECE1 PTK2B HDAC9 STK10 ARHGAP25 AC008014.1 STAT1 RAB30 TSPOAP1 FYN SEMA4D UBAC2 AC016831.7 NLRC5 NEAT1 MYH9 NABP1 JMJD1C ARHGAP15 SKI RAI1 KAT6B NDUFAF6\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CELF2 LINC01588 ATXN1 ARID5B ARHGAP26 LPP BACH2 UBAC2 HIVEP3 HIVEP2 MEF2C MYH9 AC068896.1 RIPOR2 PDE4B TNFAIP8 STK10 RUNX1 LINC00598 RUNX3 DOCK10 BCL2 LDLRAD4 FYN TBC1D5 FOXN3 CROCC MAML2 CHST11 AC010894.3 RHOF AKAP13 PIP4K2A RAD51B ETS1 TGFBR2 LCP2 INPP5D P2RY8 ZBTB20 CRYBG1 TSPOAP1 BCAR3 RFTN1 PREX1 NEMP1 EBF1 EVL FOXP1 AC009226.1 PVT1 AC006369.1 PATL2 CIITA RPTOR NCK2 TTC39C IKZF1 TRAJ28 ANKRD44 RREB1 DUSP10 ARSG CDH23 SSPN ITPKB PITPNC1 FLI1 JARID2 ZMIZ1 PPP3CA DLEU2 ITPR1 CDC42SE2 SH3BP5 PDE4D SPTBN1 PTK2B ATG5 MED12L PAG1 TRIO HLA-DMA GPR68 OSBPL3 ELMSAN1 CCND3 AKNA HDAC4 SMARCA2 TNRC6B PPP2R5C PHF19 TTC33 GNG7 AC093010.2 GFOD1 TRERF1 LFNG ETV6\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 ANKRD44 INPP5D TGFBR2 MIR3681HG CAMK2D CABLES1 ZBTB20 RIPOR2 LBH FOXN3 SERTAD2 ZDHHC14 LPP HDAC4 RAD51B BCL2 PPP2R5C SLC9A9 MBNL1 PATL2 IL16 LINC01588 IKZF1 ATG5 OSBPL3 FAM107B METTL8 AL390957.1 MAP3K5 RASGEF1B CBLB ELF2 UBAC2 TNFAIP8 ZNF532 RERE HDAC9 MGAT5 PLEKHG1 CARS2 EBF1 AL138720.1 BACH1 UMAD1 JARID2 HIVEP2 AC068896.1 SSPN ETS1 CDK14 TBC1D5 KLF9 CHST11 BTLA EPS15L1 DNAH2 SETBP1 AC010894.3 MAP4K4 ARID5B SLC6A6 MEF2C ZCCHC7 AC063949.2 POU2AF1 ITPKB TTC33 LINC01126 VIM-AS1 RAPGEF1 CYTIP RPTOR DLGAP1 AC093010.2 CDC42SE2 SMAD3 AKNA PAX5 NCK2 PPM1K XYLT1 LIPA MCFD2 BANP AC009126.1 GALNT2 CCDC88C C3ORF52 HOOK2 MEF2C-AS1 SNX9 ERP44 PCDH9 ST14 RASSF3 IRAK2 UST CELF1 SMARCA2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARID5B KLF13 AKAP13 FOXP1 MEF2C AC016831.7 MAML2 HECW2 LINC00598 AC068896.1 BCL2 RASGEF1B MEF2C-AS1 UMAD1 GALNT2 NEAT1 LPP ETV6 RAD51B RUNX1 ETS1 RMI2 DUSP22 AMPD3 CD82 HIVEP3 PALM2-AKAP2 MTSS1 RIPOR2 MXI1 TBC1D5 MNT IKZF1 HIVEP2 SERTAD2 STIM2 P2RY8 MGAT5 EBF1 MBNL1 UBAC2 GRK5 JMJD1C CFLAR LYN CELF2 TNFAIP8 VOPP1 INPP5D IQSEC1 METTL8 DNM3 ANKRD44 PPP3CA AL390957.1 ZDHHC14 LINC02541 LPIN2 AC063949.2 SH3BP5 TAGLN2 ABLIM1 AL355512.1 TTC33 MAPRE2 HDAC9 SPTBN1 RIPOR1 ASAP1 RAP1A SMAD3 MAML3 KLF9 LINC01185 CFAP97 ARHGAP25 CYTIP AKNA TPK1 UBE2D3 RPS6KA2 AL359710.1 RERE BANK1 ESYT2 TGIF1 FYN MED12L XPO6 WNT10A SCARB2 ZNF800 CDC42SE2 AC116366.3 VAV3 ADARB2 CIITA CEP85L ITPR2 CCDC6\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 UBAC2 FOXN3 PDE4B INPP5A RUNX1 TNFAIP8 ANKRD44 GRK5 HIVEP2 AC063949.2 DLEU2 CD82 BLK BCL2 IQSEC1 RASGEF1B ZBTB20 LINC01588 LPP LINC00598 MTSS1 PCAT1 ARHGAP15 SETBP1 AC016831.7 UMAD1 TMEM131L RAD51B AFF3 IKZF1 RMI2 ASAP1 AC068896.1 BCAR3 ANKRD11 PTK2B CHST11 CFLAR SGK1 ITPR1 ARHGAP24 ASTL ETV6 DUSP22 CBLB ZNF365 VAV3 RASSF5 OSBPL3 PRKCB ITGA4 XYLT1 DGKD UST LINC01358 PPP1R16B UBXN11 PAG1 PATL2 P2RY8 AKNA ELF1 LFNG ARHGAP25 BACH2 KLF13 RASGRP3 MGAT5 MYH9 ADAM19 MEF2C-AS1 MIR3681HG TBC1D5 RASSF3 MICAL3 AHR SUSD6 PLEKHA2 LIPA AMPD3 RHOH CDKN1B CD72 PRDM2 TRABD2A RBM15-AS1 PLCL2 LINC01135 ARID5B LINC01754 MAML2 C1ORF112 METTL8 TGFBR2 ISG20 ARID1B PLXNC1 NDUFAF6 HECW2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 ANKRD44 DNM3 ZBTB20 RUNX1 ARHGEF3 FOXN3 SETBP1 MAML2 MGAT5 RIPOR2 PDE4B ARID5B ETS1 AKAP13 RARA CARS2 AC009126.1 SSH2 FYN LINC01588 UBAC2 MED12L ITPKB RAD51B ZNRF2 CBLB CD247 GDI2 STAT1 EBF1 UST RABGAP1L TLR1 PLCG2 VMP1 MIR3681HG LPP RMI2 NFATC2 PRDM2 ITPR1 CIITA OSBPL3 CDH23 IQGAP2 MACROD2 AL035530.2 HNRNPUL1 ATXN1 PDP1 ETV6 SLC38A1 PLCL2 SPTBN1 ELMSAN1 HNRNPA2B1 CASP8 MTSS1 CELF2 XXYLT1 ADK RASA3 METTL8 AP000787.1 FBXL17 NIN EML6 BACH2 VAV3 JAK1 ST6GAL1 LDLRAD4 B4GALT1 BCOR SNX8 FOXO3 RIN3 ARID1B KAT6B AC022182.1 ADAM19 VOPP1 STIM2 CD44 LINC00598 SH3BP5 RAPGEF1 BCL2 RASGEF1B RUBCN ARHGAP24 TBC1D5 CHI3L2 LAPTM5 ECE1 LBH BACH1 GALNT6 AL031599.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 ARID5B RAD51B LPP CHST11 FOXN3 PVT1 RERE ETV6 ITPKB HIVEP2 MTSS1 AC068896.1 BCL2 RUNX1 AKAP13 UBAC2 FAM107B BACH2 LINC01588 RIN3 DNM3 PAX5 IKZF1 GRK5 SEPT9 MEF2C-AS1 LIPA RIPOR2 ATXN1 HDAC9 CELF2 TBC1D5 AC063949.2 TSPOAP1 SSPN UMAD1 MBP CARS2 ARHGAP15 RASGEF1B PLXNC1 VAV3 KLF9 CCDC88C ARID1B HIVEP3 PCAT1 CBLB ETS1 UST ARHGAP25 BLK CCDC69 MAML2 RREB1 AL359710.1 XYLT1 DUSP22 NFE2L2 ARHGAP24 MEF2C ZMIZ1 SMAD3 IQSEC1 RAPGEF1 ASAP1 PTK2B ZC3H12D LINC02240 KLF13 IRF2 ANKRD44 SPTBN1 AL138720.1 CIITA STX7 DOCK10 INPP5D ZBTB5 PATL2 PLCL2 PTPRC PDE4B ZBTB20 PRKCE ZFP36L1 PPP3CA SETBP1 ZCCHC7 RMI2 LFNG AC016831.7 CSK SAMD4A ZDHHC14 LRRFIP1 JARID2 ANK3 LINC01353\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAD51B ANKRD44 SMAD3 LINC01588 RUNX1 DTNB SETBP1 AL138720.1 GRK5 TNFAIP8 SIPA1L3 VOPP1 C3ORF58 FOXN3 ARID1B PDE4B HDAC9 KLF13 FOXP1 ATXN1 LY86-AS1 RAPGEF1 CYTIP KLF9 ATG5 LINC00598 JADE2 ETS1 DUSP22 DAPP1 CD82 AC008764.1 PCED1B CARD19 HIRA IRAK2 NRL OSBPL3 VAV3 FAM117A PRRT2 TSPOAP1 CYTH1 KAT2B NKIRAS1 SSSCA1 IRF2 SH3TC1 STK17B POU2AF1 LINC02240 GLS AL159163.1 FAM107B ANK3 PLCL2 NR3C1 TGFBR2 ARHGAP26 MAML2 ELF1 CSGALNACT1 CDK14 JARID2 MTIF3 WNT10A PPP1CA PXT1 AL136295.1 AP000424.1 APBB1IP AC009226.1 AL445430.1 RPS29 C4ORF46 LIPE-AS1 PNPLA8 USP37 AFF1 CD164 VMP1 ST3GAL1 ACSS1 MBP RARA TG PRKCH ARHGAP24 SNHG15 PAX5 SNAP47 ETV6 AL355916.3 SLC45A4 CIITA MYH9 LRRFIP1 SH2B3 SLC16A7 TAF15\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 NR4A2 RAD51B FOXP1 IQSEC1 GRK5 TGFBR2 HIVEP2 ZMIZ1 GALNT2 MEF2C-AS1 FAM107B TNFAIP8 MGAT5 AMPD3 CHST11 RUNX1 CRYBG1 AC116366.3 PDE4D LDLRAD4 FOXN3 TBC1D5 CYTIP IFNGR2 VAV3 NRL BCL2 RMI2 IKZF2 CIITA NCOA2 IKZF1 TRAJ28 ZFP36L1 TRIO YTHDF3 TTC33 NRIP1 BLK INPP5A JADE2 ANKRD44 XYLT1 PLCL2 SYNE2 DSE PIP4K2A CD82 PPP3CA MAML2 FMNL3 LHFPL2 C6ORF62 UTRN CDK13 NEDD9 FAM19A2 SUSD6 MACC1 VOPP1 DARS ZNF33A ADAMTSL4 ATOX1 GCNT2 RIPOR2 TRIM2 ETS1 ETV6 SRPK2 NCK2 KLHL5 LPP MPC1 CLEC16A PLPP1 AC010894.3 MBP AP1S3 RALA AC090371.2 ITPR2 ELMO1 KLF7 PCDH9 MIR4422HG AC068896.1 TRANK1 NCOA7 ANKMY2 AC079313.2 TIPARP CCDC88C SOD2 AC027644.4 TAF1D ITGA4 HSF2 SETBP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TTC33 GAS5-AS1 WWC3 AC008629.1 AC022182.1 PTPRJ RASGRP3 DRAM1 IQSEC1 STARD6 UMAD1 DNAAF2 DUSP10 RREB1 IQGAP2 USP6NL PDCL3 CDKN2C RIC1 TXK STK17A ARHGAP26 PUM2 LINC01215 DCHS2 AKT3 CEP290 RFX1 ANGPTL5 NCOA2 AL049844.1 BCR PPFIA4 NHSL1 CARNMT1 TRAF3IP3 C9ORF78 EEPD1 ASAP1 LINC01135 HUS1 ELOC AC118549.1 CCNYL1 PPP1R12A FHIT BMT2 MYB SP100 MACC1 GNG5 NT5C3A ZNF236 CHD9 TMEM245 BCAT1 PHLPP1 TNFAIP8 CGAS TBC1D8 AGBL5 NRP2 POMGNT2 NFIA JADE2 HIST1H3A PLEKHA2 ALCAM C5ORF51 UTP4 ARHGDIB EML6 GM2A LAP3 TCOF1 FUBP1 AC007381.1 UST AC026202.2 ALG6 FYN AC090061.1 MYO1G SPART MDC1 RASSF3 AC058822.1 AC007163.1 FAM111B AHR HTATIP2 PQLC3 RRAGB GTF3C5 LY86-AS1 DENND3 CSNK1A1 FLI1 ELMO1 ZNF638\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 CELF2 ARID5B CABLES1 LYN LINC01588 BACH2 CHST11 FAM107B LIPA ETV6 UBAC2 HIVEP2 RIPOR2 ARHGAP15 AC068896.1 AKAP13 RMI2 HIVEP3 DNM3 LINC00598 ZBTB20 ANKRD44 MBP LRRFIP1 ARHGAP25 DUSP22 CBLB VMP1 AL359710.1 TNFAIP8 ABCG1 OSBPL3 LPP TBC1D5 AL031599.1 RUNX1 KLF13 AC063949.2 TGFBR2 DLGAP1 AL390957.1 EIF2AK3 CARS2 LDLRAD4 LBH IL16 KLF9 MAPKAP1 ADTRP RHOH ITPR1 OSBPL10 BLK UTRN HECW2 XYLT1 HOOK2 MSI2 VOPP1 FOXN3 ITPKB PDE4B RAPGEF1 CLEC16A PRKCB CCR7 P2RY8 CSGALNACT1 AC116366.3 AC016831.7 EBF1 RAP1A FNBP1 RPS6KA2 LY86-AS1 UPP1 ATXN7L1 CD86 RREB1 KAT6B C1ORF112 IKZF3 UST CDKN1B OSBP CLVS1 PCED1B ANKRD33B MGAT5 NFATC2 LCP1 CLMN IQSEC1 BRF1 ATG5 SCAF11 SETBP1 MAML2 CHD9\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC016831.7 FOXP1 DNM3 CHST11 TNFAIP8 AKAP13 BCL2 ARID5B RAD51B IKZF1 SEMA4D MAML2 LINC00598 PATL2 AC068896.1 LIPA ANKRD44 ARHGAP26 ETV6 MIR3681HG HIVEP2 ARMH4 FOXN3 UBAC2 JMJD1C PTPRC CCDC88C PIP4K2A SCML4 GNG2 RIPOR2 ITPKB SERTAD2 MBNL1 MARCH1 AKNA PCED1B AC063949.2 MBP LPP PRKCH TBC1D5 ARHGAP25 CD82 ATG5 STIM2 CRYBG1 KLF13 ACTB NFATC2 ST6GAL1 VOPP1 PPP2R5C LINC01588 BACH2 ITGB1 AL450998.2 ABLIM1 AC010894.3 PVT1 HIVEP3 NCOA2 ARID1B EBF1 CDKN1B ZFP36L1 SNED1 RUNX1 TRABD2A AC009226.1 CKAP4 RPS6KA5 CMTM7 CCND3 RAPGEF1 FOXK1 RASSF2 PAX5 PRKCB TMEM131L AP000787.1 AL031599.1 ITPR1 DOCK10 PTK2B ZNF395 TFEB UST PXYLP1 AC084200.1 RMI2 STK17A NOP14-AS1 C1ORF112 BCOR AMPD3 RPS6KA2 EZR HIP1 CXXC5\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 RAD51B LPP RUNX1 UBAC2 ARID5B GALNT2 ITPKB FOXN3 RIPOR2 LINC01588 TNFAIP8 PAX5 ARHGAP25 HIVEP2 AKAP13 BCL2 UMAD1 ETV6 IQSEC1 CARS2 CD82 SETBP1 CHST11 MBNL1 CCDC88C MTSS1 TBC1D5 SMAD3 AC068896.1 PIP4K2A RIN3 ETS1 DNM3 NDUFAF6 CYTIP AL390957.1 ST6GAL1 PLCL2 RFTN1 ZBTB20 LDLRAD4 PDE4B ARHGAP24 CIITA TGFBR2 PATL2 AC016831.7 CELF2 MAP3K3 DOCK10 PRKCB ANKRD44 MGAT5 RMI2 LINC00598 CFLAR INPP5D PDE4D PLEC GAS7 PPP3CA KLF13 FAM107B BCL11A ELMSAN1 LYN TSPOAP1 RASGEF1B PCAT1 AKNA IKZF1 RERE AP000787.1 JARID2 ZNF365 UST NCOA2 CAMK2D ATXN1 FYN PALM2-AKAP2 CDC42SE2 RHOF MBP GRK5 SERTAD2 EBF1 LIPA OSBPL3 HVCN1 BACH2 SH3BP5 XXYLT1 HECW2 AL359736.1 ELF1 PAG1 ADAMTSL4 PTK2B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAD51B MIR155HG BACH2 RUNX1 ACOXL FOXP1 PCAT1 RMI2 PVT1 ETS1 LPP RFTN1 ABTB2 ANKRD44 PATL2 AC016831.7 INPP5D ACTB SEPT6 ZBTB20 VOPP1 PLXNC1 LINC01588 IKZF1 HIVEP3 TRAF1 SAMD4A SERTAD2 XYLT1 ARHGAP24 TSPOAP1 MEF2C STK17B RIPOR2 NFATC2 EBF1 CDC42SE2 UBAC2 TNFAIP8 LRRFIP1 PPP3CA AC068896.1 UST TGFBR2 DNM3 TBC1D5 JAZF1 CD58 ITPKB ARHGAP25 HIVEP2 ATG5 GNG7 CLEC16A UBALD2 ELMO1 ST6GAL1 ARID5B DTNB NFKB1 SLC15A4 IQSEC1 MGAT5 MAML2 MAP4K4 ELMSAN1 AL359736.1 NEK7 CXXC5 PLCL2 FYN SPTBN1 CD82 NCOR2 BCAT1 IKZF3 CELF2 TRAJ28 EVL NEAT1 SMAD3 CDK14 ANK3 AUTS2 NSMCE2 ATXN1 RERE ZDHHC14 ECE1 BANK1 LRCH1 BCAR3 RAPGEF1 CHST11 GRK5 PRKAG2 PRKCB STK4 PAX5 SEPT9\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ST6GAL1 LPP RFTN1 AKNA ITPKB LINC01588 HIVEP2 LDLRAD4 MTSS1 ATXN1 AKAP13 INPP5D TG ASAP1 GAS7 AC068896.1 SGMS1 CSGALNACT1 PNPLA8 IQSEC1 ST3GAL1 TSPOAP1 TBC1D5 UTS2B TRERF1 AC008764.1 ZEB2 FOXP1 ADAMTSL4 DLEU2 CARS2 RUNX3 SNX5 CAND2 MCF2L2 DENND3 MSI2 ATG5 SEC22C UBAC2 ARID5B VWA8 FAM49B LINC01137 ARHGAP15 DOCK2 DNMT3A SERTAD2 PRKCH DNAH2 AL450998.2 PVT1 CCDC88C AC008105.3 IKZF2 CAMK2D FAM117A TRPS1 ARHGAP25 GATAD2A ZFAT TTC33 ELF1 ANKRD33B RORA-AS1 RNF4 ARHGAP26 AC091114.1 SH2D3C TIMMDC1 HACL1 ARHGEF3 RAD9A TPRG1 IKZF3 LINC01126 RASSF5 PPP2R5C CBLB LINC01135 AP3M2 GATM TAOK3 PLEC CD82 PPP3CC ZNF367 USP32 SMAD3 TPD52 LINC01215 SPAG8 TRAJ28 AMN1 EPS15L1 ETFBKMT RB1 PRKCB CNOT3 JMJD1C\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RIN3 ARHGAP24 CELF2 SEPT9 ETV6 ITPK1 AL160408.2 RUNX1 IL4I1 AC006449.6 ANKRD44 AKAP13 SERTAD2 RAB11FIP1 FOXN3 GALNT2 VOPP1 RAD51B FOXP1 RIPOR2 HIVEP3 CDK19 HK2 CDH23 ELMSAN1 TNFAIP8 LPP RAPGEF1 IQSEC1 ITPR1 MED12L FKBP5 ITPKB XXYLT1 TSPAN14 LINC02240 TNRC6B MSI2 HLA-DQA1 CUX1 TGFBR2 BMF SRP14-AS1 DOCK10 AC013270.1 ARHGAP10 ATXN1 RPS6KA2 TCF4 MYH9 AC068896.1 TSPOAP1 BHLHE40-AS1 MBP AC016831.7 SGK1 ELMO1 AL390957.1 HDAC9 TBC1D5 UTRN AL162377.3 LINC01588 CCDC12 CCDC88C FBXL12 BACH2 AUTS2 ARMH4 FYB1 AC069368.1 IKZF1 FLI1 MICAL2 MACC1 MAML3 MGLL SH3KBP1 CHST11 FAM129A SPTBN1 VAV3 HECW2 SUSD1 AHR ZNF710 MED13L AHNAK ASAP1 PPCDC GSE1 RARA BCL6 RGS12 CCND3 PRR5L NSMCE1 GPR68 SLC39A10 CYTH4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZBTB16 VMP1 ZMIZ1 MTSS1 RUNX1 NFE2L3 STAT1 RIN3 TNFAIP8 AL390957.1 LCP1 FOXP1 AUTS2 PVT1 PRKCB ATXN7 AHR GLS SMAD3 ARHGAP15 AKAP13 NCOA7 GSE1 ST6GAL1 CELF2 IER5 DST BCL2L1 RAD51B CEP85L VAV3 E2F3 KIF2A ARHGAP26 IGF1R CDH23 ANKRD44 DIAPH1 H3F3B ERI2 PPP3CA ATP8B4 CDC42SE2 ZNF846 SERTAD2 PRR14 SRF FAM19A2 MAML3 PDE4B CHST11 TBC1D5 TSC22D1 UTRN STK10 MCTP2 ARMH4 MSI2 RMI2 AC008014.1 CDK6 DLGAP1 ECE1 FBXW7 PLCL2 PPM1L ASAP1 ZC3HAV1 AAK1 PHF19 TSPOAP1 MIR155HG KSR1 DUSP10 ESR2 EBF1 ITPR1 AL451062.3 SH2B3 HMGB1 IQSEC1 ETV6 RREB1 C9ORF3 KAT6B AC069368.1 TNS3 PCGF5 HOOK2 MAST4 AC093827.5 FBXO11 STON2 CUX1 LONRF1 HOMEZ NSMAF LINC02384 AL591885.1 IQGAP2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: DYRK1A ZFYVE28 SLC35F5 AC023055.1 TSKS ZNF217 GATAD2A ZDHHC5 RBM14-RBM4 AC011498.1 AUTS2 TREX2 IL2RB AP1G1 ANKMY1 YWHAZ PAXBP1 GUCD1 MPV17L2 RBM15-AS1 SGO1 CA5B MLLT3 SQSTM1 ZNF384 PRKCZ ZNF668 GSK3B HERC4 SARNP GAL3ST3 ZSCAN10 CDV3 EXTL3 RRP9 CDKN1B TRERF1 TBC1D10B FOXP1 PFKFB4 SRSF11 DIABLO UBR2 MARK2 SH3GL1 PIP5K1B TIAL1 ZNF540 ARAP3 NR1D1 RBL1 HSPB11 AP005329.2 EIF3J-DT PPP3CA ZNF574 TMED4 LUC7L INSIG1 TPK1 AL139246.3 CSNK1G3 CNOT3 LINC01135 NSD1 TECR ZXDC ERI1 AC011481.2 RAB26 MCOLN1 AZIN1 PIM1 SH3KBP1 PTBP1 NQO2 GSK3A KDM7A AC092723.5 FARSA SLC11A1 FAAP20 NRDC SNRPN GNAI2 TPRG1L GTF3A MKNK2 FOXO6 ACTB NTMT1 AL603832.3 ZNF547 XRCC3 RAP2A BAIAP2-DT PIGX BCL9 TUBB4B KLC4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MBP FOXP1 MAML2 CIITA CDK6 SETBP1 ITPR1 HIVEP3 RIPOR2 SORL1 LYN RPTOR SYNJ2 RUNX1 CHST11 ARHGAP26 RPS6KA2 LINC01934 PRR5L MAML3 TPRG1 BCL11A ATXN1 DOCK10 TAOK3 FYB1 MACF1 HDAC4 GNAI2 ZMIZ1 GRK6 VASH1 JARID2 HECW2 LDLRAD4 PDE4B IGF1R ASAP1 AKAP13 TNFAIP8 AC058822.1 NCOR2 MBOAT7 TRAK1 SLCO3A1 UXS1 ETV6 CCDC88C CPVL RASSF3 MEF2C CDH23 ZNF395 OGDH ZCWPW1 AUTS2 AL138720.1 AMPD3 PLAUR PACSIN2 ANKRD44 CD82 AC004540.2 RFX1 PATL2 AC016831.7 FAM129A AC010894.3 PVT1 XYLT1 NEDD4L HIVEP2 HIST1H2BC LINC00589 MLLT3 CATSPERG CARS2 LPXN MREG ACVR1 TTC33 MIR3681HG MCF2L2 ARHGAP10 FHIT TXNRD1 PTPRJ EXT1 TRIO AL390957.1 E2F7 SKAP2 SMIM35 LIPA ZBTB8OS TBL1XR1 CYTIP KIAA1551 CXXC5 PPP3CA\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: GTPBP6 ZNF846 PLAUR RPL36 HNRNPU METTL23 AL158152.2 MATN1 ZNF213-AS1 CFL1 PDIA6 AC008014.1 ACAA1 SEC31A CIC AIDA NHP2 SNRPD2 KCTD9 SETD3 ALDH6A1 CCDC61 EEF2KMT AC008440.1 SDE2 SIN3A RPS12 ADAMTSL4 HOOK2 DNAH2 RMI2 OXSR1 PTPRE MARCH2 GPR108 PATL2 TESK1 KAT6B INO80B SPAG9 THRAP3 STIM1 HADH SEC14L1 LMF1 HLA-DMA NAIF1 ATP1A1 LINC01004 PSMA5 U2AF2 STAT3 FAM214B GADD45B GAS5-AS1 LINC00265 ENSA KLF13 DUSP23 ZBTB24 SAP130 MPP7 NAT9 MLEC CBX8 IBA57 RIC1 ARNTL EIF2AK3 GMFG AC243960.3 CBX5 ECSIT STK10 AC009226.1 APLP2 AC010271.2 HNRNPL NFE2L1 TMEM30A CCNE1 SLC25A42 RBM15-AS1 AC090617.5 MARCH8 RNF167 MAP2K3 PER1 SLBP PTRH1 IL1B PSAP AL669918.1 ZBTB17 PAIP2B VPS26C CDC26 STAT1 MRE11 CARS2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: NEAT1 CYTH1 LFNG SEPT9 LINC02384 EHD1 GRWD1 RARA ST8SIA6 ACY3 LINC01973 AC119396.1 RCC1 CYB561A3 KCNMB4 IL4I1 ADIPOR1 ZCCHC14 ESRRA ING3 NRL ABCD2 AP002358.1 CROCC CORO1A HNRNPUL2-BSCL2 CNFN WDR74 AP001453.2 CIC AC025159.1 CLK3 LSS AGTRAP WDR26 MAPK8IP3 RPTOR TRNAU1AP TNRC6C AP000769.3 PYGM AC097713.1 GCC2 SSSCA1 ITPR3 CLEC7A DDB1 TMEM134 RPL13A CASZ1 PCGF5 LPP MITF CEMIP2 HSF2BP CTSH AC006486.1 BCL7C MNT DRAXIN CTF1 CDC16 PRKCE LIPE-AS1 AC243960.1 ADCK5 ANKRD11\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TNFAIP8 GPR68 NLRC5 FNDC3B ZBTB20 MCUR1 AHNAK CGGBP1 ITPR1 IQSEC1 EIF2AK3 MYH9 AC009126.1 CAGE1 PRKCH ARID1B ARHGAP26 LINC02356 AL160408.2 SLCO3A1 GADD45A CXORF40B FKBP2 ZNF592 KIF2A AL109910.2 SMAD3 RDH14 EVL SPDL1 LINC01336 ZNRF2 TRANK1 RAP2A MRPL24 ZMIZ1 TC2N FLI1 DUSP10 TLDC1 PCAT1 AL390957.1 ANKH ARL2-SNX15 MAP3K3 SIN3A AC061992.1 JOSD1 IGF1R DNM2 IL4I1 CD247 HEXIM1 NR4A2 CARS2 KLF7 CD96 PGAP1 RAPGEF1 AC020743.2 AC012184.1 MXI1 SMG6 FYCO1 KLF5 KIT RAB7A MIPEP LPCAT3 AC068896.1 C1ORF123 UBAP2 CRADD ZDHHC20 AL451062.3 PACS1 MBD1 FAM13A KLHL21 CIP2A ELK3 WDR78 KIFC1 ACTB LINC00299 CDC42SE2 AP000282.1 BBIP1 ATXN7 DPP8 SUMF1 PPP2R5E BCL9 GRAP2 PIP4K2A NOL4L RFFL BAP1 SLAIN1 PCGF5\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CASP9 U2AF2 ZNF511-PRAP1 EXOSC4 MKNK2 ZBTB45 SLC5A10 FYN ASCL2 KPNA4 HOMER1 LRRIQ3 TRIB1 UBAC1 ZNF615 BMPR2 KNOP1 BBC3 ATOX1 C1ORF43 CIRBP-AS1 AC034102.4 TNFRSF12A PTPRE CARS2 P4HA2 RHEB NAA50 HOOK2 PHF8 PNKP RBM14-RBM4 CLK3 DOHH FHOD1 LINC02352 GTF3C1 METTL21A FLYWCH1 IRAK2 CSNK1A1 ZBTB4 TAF4 RASGRP2 FAM129B PIAS2 PLAUR MAN1B1 BX640514.2 MED22 SKA2 CREBRF CNOT10 RPS6KA1 FANCA GSPT1 XPO6 AC005808.1 ASB6 AC003002.1 AC008060.3 HMGN1 C19ORF54 TMEM256-PLSCR3 STK25 PARVB SLBP DOLPP1 AL121890.5 PDIA4 CSNK1G2 SCGB2B2 CLCN3 CCND3 TBC1D32 WDR59 LRRC29 ULK4 AC131097.4 ICE1 MAP2K3 TRAF2 BDH1 MTO1 KCTD21 MPV17L2 ANAPC4 CDIP1 DENND5A GPR157 IL6R SDF4 AC012309.1 HCG27 MANBAL ANKRA2 LSR LINC02288 RCC1 GMNN\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLSCR1 ATXN1 CFL1 ERCC1 KCNN1 SIPA1 HEG1 NFKB1 CRADD PER1 LINC02001 RAB8B CARS2 LINC00111 SUN1 KCMF1 SESN1 LINC01431 NARS VPS37B DENND5A GATAD2A ANXA2 FOS MKL1 FCGR2A DAGLA GPAT3 EEF2 LINC01778 AL928654.3 PELP1 SVIL CRTC2 BAZ1B GRHL1 NAPA AC008897.2 HIST1H2BN AC099552.3 MAN1B1 PRDM8 ERICH1 SHISAL2A SQSTM1 EIF2AK3 PFKFB4 LRTOMT RACGAP1 POLG C19ORF84 ATG13 CREBRF ICK ZNF77 JOSD1 PLCB1 SLC37A2 GSE1 HSD17B14 ARHGAP26 FOXN3 POR AL451062.3 CARD19 ASF1B N4BP1 ZMYM5 STOM RELT SH3PXD2B NOLC1 RHOG CD53 RASSF3 AL031283.1 KLF13 SYNJ2 ATXN2L BIRC2 MXD4 RNF7 MICAL2 KCNQ1 SETD3 ATG9B SNAP47 KIF18A ESCO1 SRM COX8A GAB2 ESPNL ELL VNN2 FUBP3 NME7 PVT1 BEST1 NDUFS7\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HOTAIRM1 PAQR9-AS1 EIF1 RARA AKAP17A KLHL15 RPS6KA5 SETBP1 RASGEF1A DYNC1H1 CKS2 CPD IKBKE PAX5 CCNT2-AS1 CAMSAP1 EFNA1 EPN2 RB1 GSK3B PATL2 AL590004.4 GPR3 ELOA-AS1 TIGAR AC068724.3 FAM171A2 ITK HIST1H4J LINC01220 STOML2 ARMC2 LINC02482 MAX NEDD4 ELMSAN1 AL031985.4 HIST1H2BM TMEM110-MUSTN1 TUBD1 ALKBH8 HIST1H4K LMF2 CDK14 MTMR4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC117394.2 RAPGEF1 RUNX1 ACTB HIVEP3 CHST11 MED12L ETV6 AUTS2 KLF9 BCL2 BHLHE40-AS1 AL355512.1 ANKRD44 ZFAT IQSEC1 CELF2 AL136018.1 IKZF1 AC016831.7 LINC01588 RPS6KA2 ECE1 ITPR1 ZC3H3 ATXN1 ARMH4 CBFA2T3 MEF2D TBC1D14 HIVEP2 TSPOAP1 MIR155HG RIPOR2 KLF13 UBAC2 RASSF5 AKAP13 LPP PALM2-AKAP2 FBXL19 LMNA NADK2 MAPKAPK2 ST3GAL2 CFL1 LPIN1 BMF TBC1D5 MBP INPP4A AHR FOXP1 RRBP1 LINC01004 CLEC16A FOXN3 FHIT MGLL ZBTB4 P2RY8 CD74 SH2B3 CASP8 MACF1 ACOXL THEMIS2 PPP2R5C LINC00265 ELF2 PLEKHA2 IRF2 TLCD2 BANP AFF1 GAB2 PRKCB ASAP1 STK10 UBE2D3 ZEB2 RFTN1 LYN RARA DOCK8 WNT10A MPEG1 RIN3 GALNT2 NEDD9 ENTPD1 SLC2A1 ELMSAN1 ARHGAP26 NEMP1 NFE2L2 GPR68 FHAD1 VOPP1 GSK3B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 FOXP1 ZBTB16 NSMCE1 FADS2 FOXN3 CLASP1 KLF9 ARHGAP26 E2F3 MBP TGFBR2 HOOK2 SP1 MTSS1 SLC8B1 TNRC6B SIN3A CIC AL136368.1 PRKCH VCPIP1 FOXO1 CHST11 ETV6 SMARCA2 CELF2 IGF1R JARID2 ZBTB20 CXORF40B PTMA PNKP PLEC MAML3 PPFIA3 MTMR4 AP000787.1 AUTS2 PPP3CA IL12A-AS1 ITPR2 TUBA1C RAD9A MED12L RAB26 CORO1C ELF2 JMJD1C ZNF395 RASGRP3 CACYBP ALG1L2 CCND3 RFX3 ELOF1 RAP2A ELMSAN1 TMEM53 TTC39B HNRNPUL1 UNC45A AL359736.1 TSPOAP1 AL160408.2 AC010894.3 SEMA4D AC008014.1 CGGBP1 DOCK8 BCOR CDK6 LMNA RPS6KA2 DDAH2 SMG6 LIPA BCAR3 ZNF644 ECE1 CCNG2 FAM83E PROCA1 ZBTB4 EP400 ST6GAL1 SYTL3 LRRC20 KAT6A NEDD4L PRDM10 COMMD3 SCUBE1 PRUNE2 RIN3 FOXO3 KDM4C GSK3B NEMP1 LPIN1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CELF2 PRKCH UBAC2 ZFP36L1 RAD51B BACH2 CARS2 SERTAD2 SP1 AKAP13 YWHAZ ACTB AHR MIR3681HG MGAT5 PREX1 NCOR2 SEPT9 BCL2 TAB2 MAML2 TNK2 LPP RB1 GASAL1 EEPD1 CCSER2 CYTIP RNF125 PRKCQ ARHGEF3 LINC00299 PTK2B EPC1 STAT1 TLE4 FOXP1 TBC1D5 UBE2D3 AC004922.1 INPP5A FGD6 MAP3K5 TSPOAP1 MBNL1 TSPAN5 IL4R BHLHE40-AS1 ST3GAL1 P2RY8 PIP4K2A ZYX ARMH4 DOCK8 UST SLC1A5 SNX30 JARID2 CHST12 PIK3R1 BBIP1 C6ORF62 CBLB HIVEP2 TOX2 RASGEF1B CMSS1 HIVEP3 PPP3CA BPGM ZFPM1 HIP1 RGS6 STOM BISPR STK17B ARHGAP26 DNMT3A RBM12B LIMS1 PVT1 HMGB1 DNM2 SLC7A1 ITGAE TNRC6B TGFB1 ABHD2 CCND3 CCDC88C ERCC1 SOD2 DDX3X TMEM150B SIAH2 FAM49B PDE4B FBXL12 ANKUB1 PABPC1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 CSGALNACT1 LINC01588 RUNX1 HDAC4 TNRC6B UMAD1 FAM117B PPM1B CEP170 TCF7 EVL ARHGEF3 ARHGAP15 IGF1R NFE2L3 NFKB1 ASAP1 RIN3 KPNA3 ZNF831 CCND3 ARHGDIB ARMH4 ITPR1 MSI2 MAP4K4 CIC ARHGAP26 LEF1 CDCA3 KLF7 C1GALT1 SIN3A ARID1B HBS1L OGDH FAM107B BID ACTB ABTB2 LSM4 BCL2 FSTL3 ASB2 ELMO1 PLEC TNFAIP8 SESN1 ASXL1 ELL ANKRD11 CORO1A ARHGAP10 TLDC1 SPTBN1 PRKCA TSPAN14 PRKCH PCAT1 WWC3 CBFA2T2 SUN2 ACTR3 IGFBP6 NEMP1 TOMM70 PHF21A RIPOR2 AL359710.1 ALOX5AP MYORG SERTAD2 VRK2 MYO9A MSN DUS2 GALNT2 ARPC5L JARID2 PPP2R5C LFNG DOCK10 PTPRK MIR3681HG MCM9 CDH23 LCP1 NEDD4L DLG4 NFIA SCML4 RNF216 CPEB4 STK17B LTA PCSK5 AC022706.1 APBB1IP PPP1R12B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZFP36 RAB3D AL592071.1 SENP3 PNKP IQCN RAB8B ACTB CAMTA1 AD000671.3 MBD6 RABEP2 MIDN MBOAT7 SOD2 PPP1CA C2ORF76 MAMSTR FIZ1 FOPNL TECR C14ORF93 AC004923.4 TMEM256-PLSCR3 CIC PLIN3 TAGLN2 PTMA RASA1 ZBTB20 SAP130 NR1H2 AC022217.3 UBALD2 STK40 LENG1 ZBTB5 TUBB4B DOCK4 DENND2D DHRS1 MKL1 CBX5 EIF4G2 ALG1L2 SMAD2 DLEU2 HMGA1 PPCDC AL138720.1 ADRB2 SERTAD2 AVPI1 SLC43A2 SNHG8 AL049869.3 TUBA4B MXI1 CXCL2 SEC14L1 MED30 CASP9 WASF2 LINC00471 SKAP2 USP42 SELENOK MMS19 PPP6R3 MCM7 ZFP41 GTF2A1 NIFK LARP4B BLVRB AL928654.3 SETD3 GRK6 LRRC23 DCUN1D4 CARS2 FAM214B TPMT PER1 DESI1 MKRN1 AC093512.2 RSF1 SMAD3 RAPGEF1 CCDC151 TAF15 CORO1C SF1 GADD45B CRADD APTX CIPC RBM15-AS1 SESTD1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: EBF1 ITPKB TNFAIP8 UBAC2 PEBP4 XYLT1 CIITA ADAM19 NR1H2 POU2AF1 RMI2 JADE2 BRD4 ARID5B LPCAT1 UBA3 SLC30A1 CAMK2D STX10 FAM107B SMAD7 PAG1 PIP4K2A PRR5 KCNQ5 ZNF608 FGFR1OP CDK19 CARS2 CHIT1 AC009126.1 CNR2 PCAT1 DTX1 JMJD1C RFX1 LDB1 TGFBR2 TRABD2A SEPT9 PVT1 EGR2 GRK6 CROCC MYH9 MEF2C-AS1 RAPGEF6 DNM2 RNF44 KCNIP2 CHST11 SH3GL1 HIVEP3 LINC01841 PIK3R5 LRCH1 GRB2 ZNF365 BLK SMAP2 SVIL SPATA48 IL6R LDLR IQSEC1 CYTIP PKIG CDC37 RAP2A DCP2 HOOK2 GGA2 GATAD2A SMARCB1 TECR PTPN6 HNRNPUL2-BSCL2 LAPTM5 FAM78A LNPEP LINC02068 OIP5 MTSS1 AC022182.1 DIDO1 TIFA LSM4 RFTN1 AC009779.2 CLEC2D ATG5 MARCH1 HNRNPDL IQCN SGMS1 LYN TOX MAN1A1 EPS15L1 PIK3R2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 CELF2 LINC01588 PDE4B CCND3 LIPA CHST11 KLF13 LPP ARHGAP24 ASAP1 ST3GAL1 PALM2-AKAP2 AC004922.1 BCAR3 TRIM14 FOXP1 CSK TBC1D5 ANKRD44 RHOF HIVEP3 MBNL1 LINC01135 IQGAP2 ZFAT ETV6 MAML3 MACF1 FARS2 CCDC88C GATAD2A AL390957.1 FYB1 DUSP22 LINC02356 RASSF5 CFLAR TCF4 JARID2 RASA3 FKBP5 FOXN3 PACSIN2 KDM4C UTRN SH3TC1 RAPGEF1 AFF1 THADA AC068896.1 EXT1 IQSEC1 RHBDF2 AUTS2 JMJD1C ANP32A NAIF1 AL160408.2 CHST15 HNRNPUL1 ARHGAP22 PIP4K2A SLC2A1 CDC42SE2 MEF2C-AS1 RUBCN LYN C3ORF58 OGDH MGAT5 STK10 ST6GAL1 FRMD4B TDRD3 ATXN1 RPS6KA2 IGF2R MBP ARHGAP15 PFKFB3 TECR LMNA AL138752.2 ITPR1 ZDHHC14 ARMH4 UBAC2 TRIO RIPOR2 ACTB WNT10A FGFR1OP MIR155HG KLHL21 AKAP13 TRAPPC9 ELMSAN1 GPR55 DNAJB14\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HDAC4 UBAC2 CD247 BACH2 XPO6 SEPT9 KLF13 ETS1 FOXP1 TSPOAP1 SDR42E2 RHOF ITPKB PAN2 LPXN HNRNPL CDC42SE2 MED12L PRKCQ BCL2 CD6 CTNNBIP1 P2RY8 MXI1 INPP4B RIPOR2 RUNX3 HECA IL2RA MNT ATXN7 RPS6KA2 WWC3 AC068896.1 EVL CCDC9 HBS1L PRKCH SCML4 ANKRD44 PDCD10 PCED1B MPRIP MAML2 RUNX1 LINC00598 CASP8 STIM1 BCL11B CMTM7 CKAP2L ARHGEF3 ELK3 PRKCB MBOAT7 KAT6B AL451062.3 LEF1 GFOD1 NOSIP ARHGAP25 PITPNC1 ZNF628 ELL ST6GALNAC3 CNOT3 UBXN11 PTMA LINC00355 SMYD4 MYH9 PAG1 HNRNPUL2-BSCL2 PLCL1 MBP PITPNM2 GRK5 FAM107B LYPD3 MOB1A SLC25A42 RAB27A CCND3 TBC1D5 LAPTM5 PRPSAP2 APBA2 FOXO1 TCF20 UBE2I CCDC61 CELF2 WBP2 IKZF1 TC2N ARAP1 ITK NEMP1 WNK1 TPP2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: KSR1 OSBPL3 AL008626.1 HECW2 ETV6 RPS12 NBPF1 MIR34AHG HNRNPA2B1 ZSCAN26 FAM118A AC022826.2 C9ORF3 ALDH1B1 BOD1L1 SOD2 ATOX1 TBC1D10B MBTPS1 DNAH14 TMEM131L GOSR1 UBE2D2 RALGAPB SGMS1 PCGF5 BEND3 ARID1B NCAPD2 AC019131.1 GPR160 MAT2B GAS5-AS1 CROCC RNF4 NCOA2 FAM85B SUSD4 NDUFC1 PINX1 CEBPZ SH3TC1 C4ORF46 COX7C MYO7B MTERF3 BAP1 LBHD1 ZNF273 PPP4R2 KLHL24 TSPOAP1 MAP3K12 C9ORF72 SH3GLB1 DUSP22 USP34 ASB8 CUX1 HOPX RFX2 AC005899.8 CUL1 RAD51B ZMYM2 PUS10 LETM2 SMARCD1 AC073934.1 RABGAP1L PRKDC IFT22 MCRIP2 AL355472.4 GPR68 ULBP3 LDLRAD4 ANXA6 IFIH1 HIVEP2 ZBTB38 AC021678.2 SMARCC1 PARP15 RAPGEF1 ITPR1 C16ORF87 CLYBL ARMC2 CFAP53 AC008937.1 CNNM2 DSTYK LINC01607 TTC33 KDM8 EIF2AK3 RBBP7 PIGA KDELC1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC083805.1 LINC01588 AC005224.2 TMEM189-UBE2V1 AC008440.1 LYN AL157935.2 LPP SLC25A17 RPTOR NBN RECK FAM107B DRAIC SPRY4-AS1 STAG1 MIDN SLC2A1 AFAP1 HIVEP2 SUN2 AC003002.1 NLRC5 KLF10 ATF7IP UBAC2 RPS19 AL390957.1 SDR42E2 AP000787.1 STK17B AL031283.1 VPS9D1 TYW1B EIF2B2 CDYL2 BAHD1 PREX1 CLN5 AKAP13 LINC01353 ADRM1 DAD1 TIMD4 TSHZ1 POLE4 ZNF398 LINC00324 ZNF511-PRAP1 C17ORF53 PCGF5 LTBP2 AC090049.1 DST XRRA1 FAM13B ASCC1 ZDHHC14 ZSCAN5A KDM5A EHD1 AL450326.1 POU2F1 PIK3R1 ZNF692 FBXL5 EPG5 GBP4 EXTL3 GTF2I ZFR CSK CDC37 SETBP1 ARL4C AC024909.2 AL023755.1 KAT6B ZBTB25 C6ORF62 FRMD4A RUNDC3A-AS1 SPRED2 UBIAD1 TRAPPC8 SUV39H2 RHEB ZNF76 MCAT PARP9 TNKS GDPD1 RBBP6 ETS1 ZNF683 C1QTNF3-AMACR APC AC012615.5 ROCK2 FAM32A\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MNT HLA-DMA MIDN SOGA1 KCTD9 PHF12 HNRNPL APEH PDLIM7 ZNF18 AC015813.3 MXI1 KIF3C IQSEC1 TXNDC16 PGK1 GADD45B PRKRA TMEM222 ZBTB21 ZCWPW1 CARD19 PTPRE PLEC PNKP RAB4B-EGLN2 FLNA DDB2 FANCB CAMTA1 ELL DVL2 KRI1 TBC1D10B Z84485.1 MDC1 CCNH RABEP2 EME2 PHLPP1 DDIT4 SDCBP MKNK2 APBB1IP RRM2B TRIM45 MCAM ERCC1 AC027644.4 IQGAP1 AC069368.1 BBS9 MOSPD3 ZNF250 H3F3B IMPA2 IQCN LINC01137 AL392046.1 AL035420.3 LINC02569 TTYH3 SH3PXD2A NDUFAF3 C5ORF15 ZNF638 POLR3D NEAT1 PATL2 PPP1R10 HLA-E FNBP1 TNPO3 TCTN3 MARCKSL1 RECQL PWWP2A GATAD2B DONSON PDE4A SIN3A ARID5B C3ORF18 PITPNM2 ZC3H15 MAPK8 TMPO DNLZ SET SELENOK GDF9 CCL25 STIP1 POMT2 AC007192.1 TIPRL LMF1 ICE2 BNIP3L ACTL6A\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AKAP13 UBAC2 FYN MYH9 RUNX1 PRKCH CELF2 ZBTB16 IKZF1 MBP CHST11 NEAT1 MYO1D ANKRD44 TRAJ28 CCDC88C RORA PPP2R5C RIPOR2 NEK7 AC016831.7 ITPKB ELL RNF216 MSL2 DIDO1 ITGB1 AC009126.1 ETS1 LINC01004 PIP4K2A AL356234.2 HDAC4 GRK5 ATG5 IQSEC1 RARA SEPT9 HIPK2 EVL BCL9L ACTN1 MIR3681HG MGAT5 TWF2 AHNAK LTA LINC01588 AMZ1 PITPNC1 MED15 ZBTB7B ASAP1 CAPZB ST3GAL1 PDE8A ABLIM1 SLC16A7 PIGV RPTOR HPCAL1 ZNF846 ARHGAP10 SRBD1 ACTN4 ZMIZ1 DLEU2 XKR6 DLG5 STAG2 PCAT1 TRIM27 EPS15L1 DOCK10 POLR1A TPM4 TRERF1 NRIP1 IFFO2 CD55 STAT1 NSD2 PTTG1IP P2RX7 CACYBP IRAK2 RAPGEF1 TNRC6B OSBPL8 ATP6V1G2-DDX39B THRAP3 ZNF22 DSCAML1 AC008105.3 ARMH4 UCP2 MARS PRR5 EFHB ZPLD1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: USF3 MYO1G ARID5B CCDC12 MAP3K14 MYH9 PARP11 PRKAG2 RASGEF1B P2RX7 SEC23B RRM2B LPAR3 ATXN7L2 MSC-AS1 RGS6 CACTIN SLC25A42 AC009133.3 UNC45A RPS29 C1ORF112 AC015813.3 ARMCX6 SEPHS2 GGA2 ANXA11 PGRMC2 ZNF746 EBPL AL627171.2 SLC39A8 FARP2 AKAP13 RUNX1 DUSP13 IQGAP1 TNFRSF18 FADS2 WDR87 SIAH1 IL12RB2 SSH2 AKIRIN2 BICRAL LINC00893 TMEM192 ADSL GPATCH4 INSC SPATA6 SLAMF1 ADCY7 INTS3 C19ORF48 MBIP MPHOSPH8 RALY GLUL CALCOCO1 CEP170 NAA16 TTBK2 GAPLINC PKN2-AS1 DAGLB NEIL3 CENPF DTNBP1 SREBF1 PEAK1 TMEM129 TARS2 AC138811.2 FCMR ERCC1 SDS RNF167 AC006449.6 FYN RNF170 HAUS6 AP002358.1 AL137005.1 ARMH4 AC080129.1 LSM12 BRD3 EXOC2 SGMS1 DDB1 AC020915.5 COG4 SH3RF3 CCDC26 ZSCAN2 MFSD6 SNX9 CTNNA1 ABCB9\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SMAD3 MBP AKAP13 BCL2L1 HNRNPUL1 SLC38A1 RBPJ GRK6 RUNX3 PITPNC1 NOL4L TMEM150B LINC00471 ACTN4 FYB1 ARHGEF1 DESI2 ANKRD44 ST3GAL5 CCNJL TCERG1 AHDC1 DTYMK TTC39C SMG6 IL2RB CD55 USP34 SPECC1L NEMP1 RORA-AS1 SLC29A2 AD000671.3 DNAJB5 SLC25A26 SSSCA1 AC104695.2 ECHDC2 NBN AL390957.1 TALDO1 UTP3 DCPS PAXBP1 UBE2D3 PTP4A1 NTPCR MSN BANP AC016405.2 CHST11 EIF4B ZFR2 AC104452.1 AC087164.1 AKNA KLHL21 ARL4C DNAJB14 CCDC114 PLA2G16 ZNF584 GSAP RASA3 PARP16 KAT6B KLF3 ACYP2 C7ORF25 AL359736.1 CASP9 LTBP3 PLK2 RAB7A KPNA3 LRRFIP1 PARD6B PYM1 TRAPPC10 PRKCB HMGB1 CCDC12 ADARB1 ATF4 ZC3H18 AC069431.1 PRR5L AC068234.1 ARSG PRKACA CCND3 SPICE1 BICRAL CASKIN2 RGP1 LIPA NME6 WNT10A HIP1 CEP104\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: IKZF1 MBOAT7 KIF2A ANKRD44 MIDN E2F3 STX10 RAPGEF1 C3ORF18 MYO1F KCNIP2 COQ10B C17ORF107 ZCWPW1 RHOB EMC9 HOMEZ LRRFIP1 ITPR1 CIC HEXIM1 GRK6 BAIAP3 CNOT3 CDC42SE2 CDCA3 SDR42E2 SIN3A RAD9A KDM4C PLAG1 PTRH1 ATXN1 NUB1 SLC1A5 AL133523.1 ZNFX1 RAB8A PYCR3 NTNG2 HNRNPA0 PLIN3 AC008764.4 ITGB4 ABHD12 TBC1D10B MBTD1 GATAD2A GART C1ORF174 ZFP36 RBM15-AS1 USHBP1 WDR1 SERTAD2 PTMA L34079.1 GSK3B RRAS MORC3 AL020995.1 IL2RA MYH9 UBE2D3 NUCKS1 SENP3 RCOR1 PTPN12 DDX3X LINC01003 THUMPD3-AS1 MSMO1 C21ORF58 AP001033.1 FYN ANKRD16 MBNL1 CBX7 FAM107B GRID2IP ABHD15-AS1 CARD19 XYLT1 MCF2L2 IQGAP1 AC107214.1 SLC4A7 ACLY EIF1 DLEU2 ADAMTSL4 LINC01126 COTL1 FKBP2 PHF12 CFL1 RHOA TK1 CCDC9 NOLC1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AL390957.1 NAIF1 PNKP GTPBP6 TECR SIN3A SPTLC2 VIM-AS1 LMTK3 CIC IQCN NLK IDI1 INPP5A FOS SLC45A4 MOB3A FBXL12 RELT ERN1 ERCC1 STX10 NFKBIA MRPL24 MTO1 EIF1 NOSIP AC024592.3 MMAB IFRD1 AC008764.1 PLK3 LYPD3 FARSA ZNF438 EPOR AC025283.3 AC008105.3 MTMR3 GADD45B SLC1A5 PLA2G6 EZR GAS5-AS1 AP001458.2 MFSD12 GAK MIDN CARD19 WDR1 TESK1 ZSWIM6 LINC01137 NUP98 MGA MAP3K11 DUSP10 CCDC9 IL1B RPS6KA2 PARD6A NSUN6 TAF4 SQSTM1 LINC01135 BCR GTF2A1 KAT6B NUDT8 FIZ1 HSPB11 ATG5 SPATA2L CCDC59 E2F3 CHD4 PTMA VSIG10L ANKRD11 FLNA YIF1B MTMR4 ETF1 H3F3B NR1D1 PRKACA CD55 HIVEP2 PPP3CA PRKAG2 EIF2AK3 SELENOK CCDC88C AC008440.1 CASP9 QRICH1 DERL2 CAMTA1 HOMEZ SHARPIN\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ERCC1 ZFP36 MIDN IL4I1 EHD1 TSKS CIC MNT PNKP MBOAT7 MXD1 HLA-DMA AL138720.1 HOOK2 ASF1B SRSF5 IQCN AC027644.4 BBC3 RNF44 HEXIM1 STK40 SIN3A DNAH2 ATG7 VPS37C SP1 H3F3B SUCO UBE2S TLCD2 RSPH1 CTNNAL1 HMGA1 HSP90AA1 PIP4P1 FAM214B C17ORF107 ALDH6A1 CCNL2 STX4 IPMK ZBTB3 IDI1 ADAM10 RARA STX5 H2AFX EMC9 PITPNM1 ACTR1A CAMTA1 NFKBID IFNGR2 USP22 AC011481.2 RAB11B-AS1 APBB3 TXNDC16 STAT1 ATP1A1 CDC37 HIST1H2BC ZNF18 PPM1F SKI AC008764.1 SCAF11 STK11 TEX45 MAP2K3 SERF2 RAB3D AP4B1 AP000787.1 TDRKH ARNTL JARID2 MTF1 CCDC9 PARP2 RPN1 ZNRF2 NANS KLF10 CAPRIN1 CIPC AC104695.2 VPS35 CRK CIRBP SF3B6 POLM C9ORF72 GNB2 RBM14 CARS2 TTC33 AC004923.4 INTS6\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MGAT5 NFE2L3 WWOX Z84492.1 PLEK GNG7 FAM78A AC068896.1 ZNF107 ACOX3 MSL2 IL5RA LRRC31 TNFRSF14-AS1 NUDCD1 STIM1 MAST4 ZFPM1 ASH1L CNR2 PTPRC TRAK1 AL136962.1 SCML4 AC007728.2 TNFAIP8 GTF2E2 SLC37A3 AC135371.1 FOXP1 DNM2 LINC01888 AL590560.1 PIWIL4 HNRNPL NOD1 YIF1A TRMT6 GGA2 SIDT1 AC005332.8 AP000777.2 CACTIN EXOSC4 PALM2-AKAP2 ZGRF1 AC008691.1 CLASP1 C3ORF58 TEC SYK BRPF1 AL512625.2 GRHL2 FAS CCDC65 NAA16 CA3-AS1 PANK3 NUDT21 COL15A1 MYO16 ATG3 PIKFYVE SEPT7-AS1 PMEPA1 CDK14 COL16A1 ACTN4 GLIPR1 PITRM1 CAPN12 CAMK2B MRPS5 AL138752.2 MTO1 CEP170 MIA2 ITPKB PNP AC096920.1 AL157756.1 LINC02363 RPS6KB2 FAM13A NUMBL EIF3E UVRAG EPB41L1 VPS8 PEX6 TTC39B HIST1H2AH AC016831.7 PODXL2 CDCP1 CARD19 MRPL34 KCNAB2 FSTL3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: IKZF1 FAM107B RIN3 PATL2 AC016831.7 CORO1C USP1 TMEM131L TXNL1 AL139383.1 STX11 TIGIT DLEU2 CCND3 TBC1D5 CYFIP2 CELF2 UBAC2 MOGS EPC1 ADAT2 SLC25A28 ILDR2 METTL21A PARD3B AC011498.1 SEC22C PES1 AC005041.1 NDUFA5 STIP1 GSTM5 ASS1 TXNL4B TRAV22 PCNT STAT1 AC048341.1 SLC11A2 LFNG AC051619.4 JOSD1 RASA2 SLC13A3 PMPCB MAP3K14 WDR74 NFKBIA ORC2 C1ORF141 GREM2 PLAC9 UBE2D3 RBM14 TGFBR1 ATP6AP1L ITGA7 MFSD13A C12ORF4 MIR155HG LINC02328 TSPOAP1 GNG7 LINC01169 ISG20 PAG1 ZSWIM4 AC090617.5 LY9 PCNA HERPUD1 ENTPD3-AS1 MXD4 CDKN2B-AS1 ALOX5 TLCD2 OGDH RPS9 BCL2L14 SRRM3 PUS7L DOCK9 AC023796.1 ARHGAP12 RAPGEF6 FZR1 ZNF827 ZNF627 PRDM2 CTSZ SF3B4 LSM5 IL15RA AP003472.1 HJV TOMM40L MYL6B RHOH NUP133 HACL1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MBP CIITA IKZF1 FOXP1 LPP ST3GAL1 CELF2 IL21R MB21D2 FOXN3 UBAC2 TCF4 IL4I1 ARMH4 SMG6 XYLT1 RIPOR2 ADAM19 CHST11 SH2B3 MSI2 BCL2 RREB1 LDLRAD4 WNT10A CPEB2-DT CBLB GALNT2 IQSEC1 TBC1D5 FLNA KDM2B HIVEP3 ADTRP SUMF1 ADAMTSL4 HIVEP2 IL7R ELF2 SERTAD2 BHLHE40-AS1 BACH2 ALOX12-AS1 TSPOAP1 THEMIS2 P2RY8 SNX9 PPP3CA SETBP1 MED12L ETV6 MAML3 RBPJ MEF2C ARAP1 TAF10 AHR RUNX1 TG RPL23A LIMD1 HLA-DMA FAM117A WDR1 CNOT3 CFLAR KLHDC4 RAB11FIP1 CCDC88C ACAP2 MALAT1 SUSD6 PACSIN2 ST8SIA4 HECW2 AC068896.1 RUNX2 GMDS EZR ARHGAP24 SMIM20 RGS12 XXYLT1 SLC2A1 OXNAD1 PRKCB MIR181A1HG ARL4C GNG7 PI4KB H2AFX CASP9 SGMS1 STIM2 AC109492.1 PIK3AP1 BCL11A RIC1 NUP210 CERS6\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: BCL9L LRRFIP1 PLEK GRK2 TMED7-TICAM2 MOB3A ADD3 ANP32A SLC11A1 TRABD2A AL355512.1 H3F3B CHI3L2 PTMA SMIM33 GNG7 ALOX12-AS1 TBKBP1 MEF2C ARHGAP25 GAK CD180 LHFPL2 MED14 MED29 THEMIS2 CXCR4 VMP1 STK40 ACTN4 AIP MXI1 NCOR2 CTDSP1 TTC39C DENND2D DGCR2 NKRF SMAP2 GRPEL1 JADE2 CYB5R1 AC097534.1 CLIP4 IPO7 SMC3 PISD C11ORF21 ARMH3 PLAU GGA3 ZNF518B PYM1 TRIM36 TBC1D8 ELL XYLT1 LSP1 CXORF65 ZMIZ1 MALINC1 LMNB1-DT SKAP2 CD55 CTPS1 IQCD F5 CATIP C1ORF109 SSBP4 FAXDC2 HINFP SOCS7 XPO1 LIMK2 HIRA TRERF1 KLF16 NAA50 MYO1F HK2 IQCN ZNF718 AC006449.6 SOS1 LINC01888 ZCCHC14 AC008629.1 DGUOK TMIGD3 RNF44 DARS-AS1 TNFSF12 CTDNEP1 AL391597.1 GFPT1 SH3D21 TMEM121B PPM1F AC048382.5\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: IRS2 CMTM7 CCNI CUL1 AC008629.1 OSTF1 ABRAXAS2 DCTN5 ARID2 RIF1 CDK6 ETV6 TNRC6B THRAP3 FLOT1 PADI4 ARCN1 PKD1 MRPL4 ASCC1 C5ORF51 AC008957.1 DMXL2 AC061992.1 CHRM3 PHLPP1 RAB3GAP1 AC106782.2 AKAP9 NCALD STAMBP JPT1 ULK1 CCNA2 LMBR1 OPN3 RAD51B GRHL1 RNF216 SPG7 HMGN5 EIF2D DVL2 USP4 RTF1 VSIG10 AL034549.1 MYO1B MGAT5 MARS RALB PHACTR2 LINC02522 TMOD1 SMPD3 ANKRD11 PLA2G4C\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ERCC1 NEAT1 DNAH2 ETV6 CD82 NFKBIA ARHGEF3 AL138720.1 MNT AL390957.1 TBC1D5 CARS2 HOOK2 PTPRC MBP FOXP1 ATXN1 ETS1 AC069368.1 AC008105.3 NDRG1 ASH1L FLNA RASGEF1B EHD1 TNFAIP2 TNFAIP8 CACNA1C PANX1 PXN PRKAG2 PKM CMIP ZCWPW1 MEF2D ITPR1 AC079313.2 FIBP RARA LINC02356 DLGAP1 RBPJ CHST11 CATSPERG CKAP4 ZMIZ1 RAP2A AC027682.4 HIVEP3 IL1B PLEC PDLIM7 SLC43A2 STK40 PPP1CA PLCL2 CHD4 RCC1 SLC1A2 MICAL2 AL355315.1 SEC16A CARD19 AL158152.2 NR4A1 CUX1 SH3TC1 BIN1 PTPRE R3HDM2 STK10 C3ORF58 ARHGAP26 AC008014.1 ATP1A1 SH2D3C PATL2 ADAM10 GRK2 NUFIP2 GASAL1 SPTBN4 GATAD2A STIP1 BICD2 GPR157 CCDC114 SIK3 CFLAR KLF9 NPTN SCARB2 KLHL21 SIN3A RHEB AC016831.7 PIK3CD ACTB EGR1 AMN1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: STK10 H3F3B UBN2 CAMTA1 LTA PBX2 SMARCA5 GADD45B PDE1B PGRMC2 DSE FCHSD2 KIF22 SNRK MAP4K4 ATP2A2 HIVEP2 P2RX7 DNM2 PTPRJ TWF2 CELF2 STK32C RSU1 HIST2H2AC IGF2R SH3GL1 CIC MYL5 BRICD5 TMEM167A C6ORF62 AD000671.3 C15ORF48 MAP3K14 CTSZ PPP2R2D AC243964.2 PLAUR AP000787.1 PLIN3 GSE1 NDUFV2 EIF1 NDUFAF6 ENSA METTL8 TMEM145 AC007192.1 PITPNM1 SF1 AL928654.3 DCTN4 SDE2 LAMTOR4 CTDNEP1 EHD1 LDLR WRB PGM3 TNRC6B ARL15 DNAH2 SLC25A37 DLGAP4 ACOX3 TNFRSF8 ARID3A TPTEP2-CSNK1E AGPAT1 TSPAN18 ARHGAP45 TLCD2 FARSA CAPG PLA2G12A FYB1 TEX264 CHMP2B UFC1 MYH9 KLF6 RFXAP EIF2AK3 MCPH1-AS1 PLOD3 ZC3H3 ZMYM5 AL359710.1 MBP MIDN CDC42EP3 HIST1H2BJ Z83844.3 RERE WDR13 BIRC6 XRCC5 ARHGEF3 ERICH1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATOX1 RUNX1 HOOK2 CIC HIVEP3 SEPT9 SIN3A MNT CHD9 ZSWIM6 HOMEZ LBH LINC01126 MSI2 CASP9 GRAMD1A IBA57 PNKP UHRF1 ATXN1 AC069368.1 AXIN1 OSBPL3 TLCD2 DNAH2 LINC02356 RNF167 CD82 METTL13 AC138150.1 KCNC3 CHD4 GM2A RRP9 HIPK2 ITPKB SP1 EIF4G1 CBLB EEF1G NOSIP ARNTL C1ORF52 KDM2A C21ORF58 ARSG HLA-DMA S100A11 ATP8B3 P4HTM CRYBG1 GTF2I RPS6KA3 H3F3B ARID1A AC090517.4 NEAT1 DERL2 SBDS HIST1H1E AC016831.7 SOD2 DOCK10 EIPR1 NQO2 SERTAD2 PDE4B SESTD1 PITPNA CCNY SLC5A10 AC020916.1 ARAP1 RMI2 CCND3 KIAA0895L SMG9 HDLBP RELT NCAPG2 THEGL PREX1 RNF44 CHMP2A PRPSAP1 GMDS AL627171.1 INTS6 HNRNPUL2-BSCL2 PI4KA GPR137 LINC01136 NBN KAT8 LUC7L SDR42E2 GATAD2A RRAS MBD6 STAT6\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MAPRE2 CROCC AC109492.1 TSPOAP1 CHD1 EVL LFNG MAP3K14 LPCAT1 CDC27 ARHGAP26 LBH LRP3 MYO18A SRSF7 CYTH1 ZBTB32 TAF15 PPP2R5B RNF181 NADK NEAT1 ALDH18A1 SUN2 MCTP2 ABLIM2 KANSL1 HOOK2 AK9 ZNF365 KLF13 AC010487.3 CDC37 ITGAE AC243829.4 MBNL1 AC016831.7 ERI1 IQSEC1 DRAIC PPM1F SIN3A PDE8A STAT1 KCNAB2 FAM13A APOL3 ADGRG5 INPP5F GRPEL2-AS1 PRPSAP1 PLCB3 DAD1 FBF1 VPS37B CASP3 ZDHHC20 ZBTB25 NAA50 CENPT SRCIN1 DMTF1 CCDC114 RHOF IL12RB1 SRSF4 AC013270.1 AGBL3 UTP11 C19ORF84 C17ORF107 PSMB9 AC005837.1 RASSF5 NOLC1 MDC1 ENSA AL356417.3 HNRNPF CPAMD8 RAD9A PLEKHH3 PPP6R1 NFKBID USP45 ABHD17A ETFB ATXN7L3 OSBPL8 CHCHD4 ETFBKMT TNFAIP8 LIMD1 DYRK2 AK3 AMN1 ERCC4 PRKAR2A MTSS1 CTDNEP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TTC33 B4GALNT3 CEMIP2 ST8SIA4 IKZF1 CENPT HDAC7 PTPRC IRF3 GSE1 LINC01588 PIM1 LINC00598 CHSY1 CNNM3 PDE4B FOXK1 NUBP1 LINC01185 MINDY1 EHF AC021188.1 STXBP5-AS1 STX12 AC019131.1 TPD52 ADK SNX5 ANXA11 TUBE1 TBC1D2B PURB MAP1LC3B2 APMAP SEMA4A HNRNPUL1 RDH14 UMAD1 USP33 ZNF585B ALG5 TRIM29 ANKRD17 LIPA SLC25A26 DARS RRP12 BHLHE40-AS1 MAPK1 ZFAND6 NAMPT CHCHD3 LINC02102 TUBA1C NUDT19 OCA2 PTPRJ SGCE SIN3A GPR137 MAPRE2 AURKA AL357060.1 MBD4 WDR19 MKKS H2AFV LMBR1 P2RY8 NLRC3 GIT2 GALM PRPF4B RAB8B PIF1 SEPT9 KIAA0100 FOXD1 ASAP1 B4GALT7 FGF14 LRRC8C ZBTB20 CELF5 KIAA1671 MED15 OSBPL3 SEPT6 FHIT CASKIN2 PHYKPL FRMD4B GRB2 SLC2A5 LINC01990 MCCC1 WDR86 AC011773.4 ELF1 KLC4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SIN3A HOOK2 TBC1D10B HNRNPL ZCWPW1 MNT IBA57 TECR ZNF846 PRICKLE3 MIDN CARS2 PLEC AC016831.7 SETD3 HNRNPUL1 ECE1 MBOAT7 PHF19 ACTB ANKRD11 AC008440.1 AC018816.1 EFCAB14 GASAL1 ZDHHC5 KCNC3 ELL AL139246.5 MIA-RAB4B HNRNPUL2-BSCL2 ATF4 LMTK3 AC010271.1 KLF13 SDR42E2 BTBD19 EVI5L PCF11 ADAMTSL4 PLA2G6 RPL36 GM2A IRAK2 DYRK1A FLNA CIC CREB3L2 HEXIM1 HOMEZ NFKB1 DNAH2 ANKMY1 ZNF367 STUB1 PIK3CD HAVCR2 PNPLA8 SF3B6 ADRM1 MFSD12 C21ORF58 RARA DBP KDM8 TSC22D1 AXIN1 HLA-DMA SMIM25 SCLT1 PIK3R5 UBE2D2 C15ORF48 AC079313.2 CD82 AC010271.2 TOP1 AAMP DDAH2 BMF IPO5 PMEL HSPB2-C11ORF52 PLAUR MTFR2 CTDSP1 SKI RARG FAR1 LENG1 PBX3 CBX5 DGKQ SEH1L AC068580.4 PFKFB3 PDIA6 ATOX1 HIVEP3 EME2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 PRKCH MBP SPTBN1 CELF2 MAML3 DLGAP1 JAK1 RUNX1 ARHGAP26 CHST11 CDK6 RASGEF1B KLF13 EEPD1 GRK5 IQGAP2 MALAT1 SMAD3 ST3GAL1 ELMO1 TBC1D5 FOXN3 AL390957.1 NR4A2 JMJD1C LRCH1 CYTIP AL450326.1 HECW2 NDUFV2 GSE1 UST CDH23 GATA2 SYNJ2 TRPS1 IKZF1 ETV6 PLEC TNK2 ARHGEF3 AP000787.1 ANKRD33B ZEB2 TG MCF2L2 DNAH2 FAM117A PNKD STK24 ELMSAN1 SETBP1 TMEM192 NEK7 SLC6A6 XXYLT1 ZMIZ1 PRR5L CAPZB TNFAIP8 MYEOV TNS3 HIVEP3 AKAP13 CFLAR MOB1B LIMS1 ZBTB20 ITPR1 RERE PPCDC AC007384.1 PRPSAP2 BCR HDC ANKRD11 DRAIC CORO1C GSK3B WDR1 CD82 ST3GAL2 ZNF804A TSPOAP1 EVL ATAD1 MAP3K5 CYTH4 ASMTL PNKP AMPD3 SREBF1 AC011747.2 AL160408.2 ANKRD44 DGLUCY UMAD1 SH3PXD2A ZBED5-AS1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PDE4B SEMA4D IKZF3 WASL TBC1D4 HDAC4 AC004241.1 SLC4A4 MEGF6 TIMM9 PIK3IP1 PIP4K2A AL357060.1 MARK3 KMT2E MB GYS1 GOLGA5 FAM49B GPATCH2 AP000350.4 CCDC194 BUB1 UBAC2 MIA-RAB4B DAB1 DGCR2 LINC00299 PACS1 CEP85 SLC44A5 PCBP3 AMOTL2 LINC01423 KAT6A ENTPD3-AS1 LY9 HSP90AB1 GLIDR CNDP2 STIP1 AL590440.1 GNG2 DAAM1 FARSA SIN3A TCF3 GNG8 LINC00467 RPTOR AP001025.1 PNPLA7 ANKRD17 KDM2A RPS6KA5 ZC3H4 AL158152.2 AC024909.2 MOB3A PRKD1 IL1R1 RPL39L TRIM31-AS1 UBALD1 AL355076.2 PARP16 IVNS1ABP TSPOAP1 CLN5 AC120024.1 BRWD1 BCAR3 PAQR8 AC023906.5 RIPOR2 IFRD1 ZNF675 NSG1 ATXN1L IL7R PNPLA8 PLEKHA4 UBE2J1 CEP68 NADK2 HOXB-AS3 FUBP1 AC003958.2 PNKD ADAMTS6 TAF1B MECP2 SPRED1 DNAJC21 STK40 TLN1 ARHGEF6 CIC TOMM40 VAV3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CELF2 ZBTB16 FOXP1 ATXN1 GSE1 TBC1D5 ARHGAP26 AP000787.1 SMARCA2 KBTBD3 FOXN3 DUSP10 MEGF9 FOXO3 MXI1 NOL4L NFIX DLEU2 CBLB AC008695.1 ATP2B4 TNS3 IKZF1 RUNX1 BCL9L ATP8B4 CAMTA1 GRK2 FNDC3B ANKRD33B LIPA LRRFIP1 HDAC6 LINC02029 AHNAK HIVEP2 GSK3B CFLAR PPM1B CLEC16A BCL11A KAT6A IPCEF1 PYCR3 PACSIN2 MAT2A NEMP1 CHST11 ZBTB2 KLF10 CORO1C PKIA-AS1 ANKMY1 LINC02453 FNBP1 XXYLT1 MAP3K3 CDK6 RUNX2 INPP4B SETBP1 RIN3 CDC42SE2 AKAP13 UMODL1 ST6GAL1 AC010894.3 ELMO1 UTRN RAD51B CREB3L2 CCND3 SLC40A1 KLF13 AC016831.7 PAX5 DEDD2 UMAD1 ZNF367 E2F3 ELL USHBP1 AC116366.3 WDR77 CCDC6 OGG1 RNF44 MNT HIST1H2BC TGFBR1 ATG5 HNRNPUL2-BSCL2 DUSP22 CEP170 BCL2L1 CFL1 FBXL12 KDM2B KLHL21 FOXN2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TPT1 NCOR2 ZSWIM6 ZMIZ1 SH3BP5 CDK6 ARHGAP26 FLI1 PLEKHO1 CELF2 TLE4 TSPOAP1 ITPKB TG JARID2 FAM86C1 SSSCA1 FOXO3 USP47 FMC1 PRKAG2 CROCC CCDC167 IRF2 PREX1 CDC42SE2 AC087276.2 BMF CDKN1B ARMC2 MRVI1 MCM9 ETV6 MXD1 TNFRSF1B TSKS ST3GAL5 HOOK2 SNX9 SFMBT2 ZNF341 AC090607.3 PPM1B DNAH2 TRIP12 RUNX1 IL1B TAPT1 TMEM248 STK3 TRIM8 APBB3 TXNIP FNBP1 FNDC3B ZNF710 ZFAND3 GPR137B SLC3A2 MYO18A CYTIP RELL1 HDLBP RPTOR DESI1 NFKBIZ ZFP36 MARK4 AC083798.2 ZFHX3 AL356215.1 AC011747.2 RPL23A FAM117B SLC19A2 TRIM25 HIPK3 PLCG2 HMBOX1 CEP295 MIR3681HG BCAS3 FOXP1 KDM4C AC125611.4 MLLT6 CHST11 PRKCQ RECQL5 DYRK1A AC007285.1 MORF4L2 PPP1R10 HLA-DMA ABHD6 MGAT2 ZSCAN31 URM1 MOB3A MKLN1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: DNAH2 KLHL25 MPHOSPH9 DDAH2 TAF10 VMP1 TMTC4 MIB2 ARID1B MVD KRI1 KIFC1 JADE2 GDPGP1 COQ8A FBRS NEAT1 IFT140 CARS2 AC073343.2 DNAJB5 ZNF787 ZC3H15 AUTS2 NCF4-AS1 UBA3 SACS HNRNPL AL161785.3 CXCR5 MAP3K3 CDK14 SGSH SNTB1 MICAL2 USP6NL AC011481.2 LUCAT1 ZCCHC14 TBCCD1 SAMSN1 SLC2A8 LINC00877 RERE CYTH1 HDAC4 CENPK TLK1 MAP3K8 ELMSAN1 GAPDH TCF7L2 PLLP TRMT1 DNM2 MAT2B GPD1 CTDSP2 INPP5A ZNF341-AS1 ZNF131 SPAG9 CCDC65 NEMP1 RP2 NHSL2 SLC10A1 TLDC1 P4HTM DOCK9 FFAR2 MXD4 HLA-DMA AC026202.2 CAMTA1 TSKS TTBK2 RREB1 DYRK1A COPE PHACTR2 AMDHD2 HIP1 NCOR2 SFPQ SLC23A1 PRADC1 TRMO XPOT CCNF ABHD17C AP003721.2 AL138720.1 FAM78A RUNX1 CPSF7 HAUS6 PSMD4 SH2B1 RRBP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 MED12L FOXN3 RUNX3 RAPGEF1 MBP CHST11 TSPOAP1 IL7R AKAP13 UBAC2 CYTIP AC068896.1 ST3GAL1 NEAT1 ANKRD44 ELMO1 ITPR1 TBC1D5 RIPOR2 STK17B TNRC6B INPP4A IKZF1 ATG5 PDE4B DOCK10 CCDC88C RPS6KA2 HIVEP2 PACSIN2 MBNL1 LINC01588 MXI1 SEPT9 BACH2 AUTS2 IRF2 ATXN1 LINC01004 PATL2 TGFBR2 AC069368.1 CAPN2 ADAM19 GATAD2A RUNX1 LEF1 RPTOR FAM214B TG LINC00598 SOD2 AC016831.7 SERTAD2 MSI2 KLF12 CDH23 RBPJ ZYX PTPN2 CD82 XYLT1 AC096920.1 ZMIZ1 PLXNC1 RB1 ASAP1 ARHGAP26 MGAT5 AC008764.1 CARS2 AL390957.1 SEMA4D VMP1 AL138752.2 MAML3 ANKRD11 CIITA LRRFIP1 MAP4K4 RASSF3 ARHGAP15 UBR5 ARL4C RERE GSE1 TRAJ28 MYH9 TNFAIP8 MAML2 PTK2B PIP4K2A MAD1L1 PPCDC CSGALNACT1 PPP2R5C RFTN1 PIK3R1 WWOX\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 RUNX1 AC010894.3 BACH2 HIVEP2 ANKRD44 RAD51B AC068896.1 CELF2 GFOD1 CHST11 CIC TBC1D5 MAML2 ZMIZ1 LINC01588 PVT1 FOXO1 ARHGAP15 ARHGAP25 ARHGAP26 PRKCH PNKP ACTB PREX1 VOPP1 AC016831.7 HNRNPUL1 WDFY2 NEAT1 ITPKB PCAT1 IQSEC1 TNFAIP8 ETV6 SERTAD2 CSK FNBP1 LPP UTRN CD247 NCOA2 SETBP1 PTK2B MYO1E CD83 SLC23A2 LFNG GGA1 FOXN3 VAV3 PDE4B CCDC88C TSPOAP1 SEC22C AC243829.4 RFTN1 GNG7 TMED5 CDC42SE2 HLA-DMA C1ORF174 SEPT9 NEK6 TRERF1 ACOXL IQGAP2 KLF13 DOCK8 NFATC2 MIR3681HG FAM107B GRK2 PLCL2 ZFP36 ITPR1 FAM214A PIP4K2A TNRC6C SEMA4D ZSWIM5 ADGRE5 ETS1 SH3KBP1 L3MBTL3 ADAMTSL4 DUSP22 ZNRF2 LINC00598 CAMK1D SCML4 BRF1 RNF139-AS1 INPP5A ASAP1 AL139383.1 MSRA RASGRP1 ARID5B LINC02341\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AL138720.1 FOXN3 PRKAG2 TXNRD1 SLC43A2 RUNX1 TGFB1 PPP2R5C RXRA ABR NCOR2 PATL2 PPP1R12B CPQ AC008764.1 AC016831.7 RAD51B FOXP1 AKAP13 ARHGAP26 ITPK1 KIFC1 KIAA0930 ALOX5 PFKFB3 HOOK2 RGCC CUBN DOCK10 MKLN1 VMP1 TSPAN14 MGAT5 LITAF NSMCE2 USP12 MIR29B2CHG DOCK4 UPP1 LINC01588 CYSTM1 MAML3 SIL1 OXSR1 PLEKHO1 ERCC1 CAST RASGEF1B PDCD1LG2 ARID5B CCDC88C SSPN AC068896.1 NUMA1 SLC37A3 RAPGEF1 AC100849.1 AC079313.2 PTPN2 IQGAP2 MKL1 NECTIN4 HDLBP ATAD2 HLA-DMA TENT5A ITPRIP ZBP1 ENTPD1 GSTO1 SDCCAG8 FAM129B TFE3 GSAP KIAA0513 NSD3 G3BP2 GAS7 ETV6 SKAP2 GXYLT2 JAK2 DHRS3 CEP290 STK4 LINC01004 TRUB2 BACH1 FIBP PDK3 SUN2 RNF216 BHLHE40-AS1 EHD1 LINC01629 SEMA4D TRAPPC10 AC087500.1 TRIM21 NDUFA6\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZBTB32 AC048341.1 SH2B3 TGFB1 SEMA4D BCL11B MBD3 AP3D1 BRD4 GADD45G ZNF414 GNG7 NKIRAS1 AC006547.2 KBTBD8 MBD1 AC022075.1 AC011462.1 CCDC9 IGFLR1 PLEKHJ1 DRAM1 BICDL1 BRPF1 OSTM1 HSPBAP1 DENND6A MRPL47 NGDN TLE3 RASAL3 BCL2L2-PABPN1 TCAIM PCIF1 AL359736.1 DGCR8 SNAPC2 C19ORF84 AC010336.1 PTGES3 ELAVL1 GAPDHS AC016405.2 TGFBR3L STX7 BORCS5 TTC9 PRADC1 CTTN AC005258.1 PDP1 LRRC49 MAGOHB NECTIN2 AC007513.1 RFT1 AC002996.1 CUL1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FAM102B IFI27L2 AMZ2 YARS TRIM33 ITK RAB26 RPRD1A MAML2 HDAC4 DCAF4 CASP8AP2 HDGFL3 PIGF TSC22D1 UBL4A PIK3R1 ZFAND2B PLB1 PLOD3 CRNKL1 NRXN1 ASF1B AKT2 EPS15L1 AL451060.1 XPOT CLN5 BLK SLC5A2 STIM1 MED22 GSR NCS1 KANK3 LINC01003 TRIM26 TP53I11 LSM2 RCSD1 TIGIT RNF44 KIFAP3 SNTG2 PTPN4 SAR1A ZNF292 RAB14 TNIP3 FAM210A KLF9 SEL1L3 CTNNB1 SLC4A7 AGK ACAP1 NUDT2 UBQLN1 LAPTM4A ZDHHC5 ZNF692 FAM177A1 FAM173B CCDC12 DDX17 LPCAT4 PRKRA ARG2 ZNF77 AL450998.2 CDC42EP1 RPS6KA5 INPP5A ETNK2 CASK MYBL1 ERCC6 TNKS1BP1 TMPRSS7 PCAT1 NES HSPA4 LAMP1 KIAA0513 HECTD4 RAB11B-AS1 ZNF66 SLC4A2 PODXL2 INO80B TUBB2A ZBTB41 C1ORF174 STARD4 IL10RA DYNLT1 DCAF7 SAP18 RNPEP ARAP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HOOK2 SIN3A PFKFB3 DNAH2 HMGA1 FER MIDN RRAS SEC31A TNFAIP2 IRAK2 PPP2R5E BRF1 ZNF846 PER1 AC008403.1 KLHL21 RNF167 MTMR4 AP000311.1 CITED2 RARA RMI2 RFX1 ZNF140 OSBP MBOAT7 ASTL ANKRD10 SQSTM1 HSPA1B CASP9 AL357060.1 TRAPPC6B SLC38A2 KLF6 ERCC1 AP3D1 MKNK2 GTPBP6 TMEM219 AC008764.1 HNRNPDL KIFC1 FAM214B HSPA5 SGK1 KLF10 ASF1B PPP2R5C KLF13 GRK2 PTMA MAX CDC25C CRK LPCAT3 CKS2 APLP2 FIZ1 HMGCS1 FAR1 RTN4 C21ORF2 STX10 HYAL3 DLGAP4 RALGPS1 ASB2 KCNC3 SAP18 RAB26 TP53BP1 AC011498.1 TAOK3 HOMEZ NHEJ1 AC025682.1 RPL23A HTT-AS DBP PNRC1 AC006486.1 ARVCF DNAJB5 SDR42E2 AC090527.2 PLEC TPT1 STK40 RNF215 DCAF1 PTRH1 NANOS3 UGP2 DCAKD RELA FBXL19 NPTN B9D1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MAML2 AC120114.3 SYS1 SPR AC093512.2 HACL1 RAPH1 CLNS1A ANGPTL6 RAB11A SNTB1 ZDHHC5 GACAT2 AL034405.1 HLCS LINC01588 SLC35A2 PRAG1 FAM169A RNF4 AL049629.2 PFKFB4 AC009126.1 USP44 MAP4K4 RFC3 VAV3 ARHGAP26 SDAD1 AC008591.1 AC079313.2 LINC00598 GNA14 TLR5 PTPN12 PLAC8 AGPAT3 NUAK2 KDM4B AC079385.1 CAPN2 PRKCQ SERTAD2 ZNFX1 KANSL2 ECPAS GALNT12 UBE2Q1 DTHD1 ULBP2 WBP2 GOLPH3L SGPP2 SORL1 ZFR2 CHCHD4 MCM6 CEACAM21 ZNF292 FAM117B SUCO AL451069.3 ATG5 NIFK-AS1 POU2F2 INPP5D CSNK1G1 DRAM1 CST7 STAT5B ZNF575 AL627171.2 HEATR3 FAM111A-DT CAMTA1 HTR4 PPARGC1B HSP90AA1 TBC1D13 KLHL3 CYSTM1 AC003973.1 HNRNPUL2-BSCL2 PPM1K PRKCA AC068888.1 AC141424.1 SLC25A28 DIP2B FLNA SMAP2 CORO1C ACVR1B SLC25A6 CMSS1 ACTL6A TMED7-TICAM2 CFAP161 CLK4 JARID2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "DC" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ASAP1 FYN PRKCH IKZF1 BCL2 CSGALNACT1 RGCC SEPT9 RB1 GRK5 AC068896.1 MED12L SYNE1 FOXP1 LINC01588 AC093010.2 ELOVL5 PTPRJ LINC00598 ARID5B PPP2R5C GIMAP8 PIP4K2A ARHGEF3 CD4 NCK2 PTK2B CARS2 RNF216 TSPAN14 BCL11B TTC33 TBC1D5 AL157373.2 CFLAR LINC01004 AC016831.7 ATXN7L1 MYCBP2 VPS13D CYTIP TNFSF8 RBPJ BCOR LINC00649 UBAC2 CCDC6 CHST11 CCDC88C CYTH1 CBX8 ITPKB TLE4 LIPA FOXN3 AHR RSBN1 KIFC1 RIPOR2 NFATC2 ZNF395 TAF1 LYRM4 MLLT10 MPP7 ICA1 TSHZ2 DLEU2 ZMIZ1-AS1 KLF12 MICAL2 MACF1 TRERF1 GLB1 PSD4 MYH9 TIAM1 ATXN1 HRH2 SH3PXD2A OTUD4 SUSD6 ZNF831 ITPR1 PPM1K SPTBN1 KLHL32 TNFAIP8 SPAG8 OSBPL3 AL390957.1 AC009126.1 CATSPERG H3F3B INPP5D NEMP1 RARG BICRAL CDC14A CAMK4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGEF3 ARHGAP15 HIVEP2 LINC01588 CARS2 BCL2 BACH2 PRKCH ANKRD44 KLF9 RAPGEF1 NCK2 FOXP1 ATXN1 AC016907.2 PCED1B RPTOR TIAM1 ZCCHC2 FYN ACOXL KATNB1 ATP13A1 OXNAD1 SEMA4D ATF2 ST6GAL1 CBLB PPP2R5C ABHD15-AS1 CHST11 SPTBN1 SUB1 LDLRAD4 PATL2 MAP4K4 CSGALNACT1 ZNF217 PHF19 MBNL1 TGFBR3 PKNOX1 MGAT5 CDKN1B COMMD6 MMS19 SOS1 JMJD1C RUNX1 AC076966.1 HNRNPA0 CASP8 C14ORF93 CANX RFX3 STK17B TRAT1 NFATC2 MAP3K11 BICDL1 PMEL AKAP13 SERF2 ZNF83 LRP11 ATG5 SLC40A1 RAB7A ARMC2 ZDHHC20 MAML2 L3MBTL3 B4GALNT3 HEG1 AC009226.1 LIPA LRRFIP1 FKBP5 TBC1D2B SERTAD2 MBP AL392046.1 TSPOAP1 FYB1 KLF11 TGOLN2 LRRC58 GRK5 KIAA1211L ECE1 RNLS MIR3681HG DPP4 ARHGAP5 PTP4A1 AC069368.1 CDK8 CYTIP DLGAP4 AL449266.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 KLF13 TNFAIP8 RIPOR2 PTPRC ST3GAL1 NFATC2 TGFBR2 GPRIN3 PRKCH IKZF1 ATXN1 BACH2 TMEM131L CELF2 NOSIP HDAC4 RUNX3 HIVEP3 ELOVL6 RORA-AS1 PPP2R5C ABHD15-AS1 FAM117A AC068896.1 TSPOAP1 FAM107B HECW2 ITK RUNX2 CD96 MED12L TSPAN14 SEMA4D MGAT5 LINC01588 GATAD2A PYM1 PIP4K2A UBXN11 AC009126.1 PLXNA4 IL7R XKR6 BCR CFLAR MNT LINC00598 PLCL1 SCML4 PCED1B CD247 FAM129A FOXP1 ATG5 ASAP1 NCOA7 EPHA4 AL390957.1 AL023755.1 CBLB ING3 CIC SEPT9 SYNE2 ZNF831 PITPNC1 RMI2 GCH1 SIN3A LPP OXNAD1 PDE8A RGS10 STAG2 TRABD2A ARSG DAPK2 AHR MXI1 GNG2 AC093827.5 CD2 TG CASP8 AC022217.3 XYLT1 ARRDC3 CSGALNACT1 ARMC2 PPP2R2D MAP3K1 FYB1 CDC14A ARNTL SESN1 CD44 ARHGAP26 RARA PDE4D\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 ANKRD44 RUNX1 MAML2 AUTS2 UBAC2 SCML4 PIP4K2A FAM102B ITK SEPT9 PARD3B TRABD2A FAM107B LINC01588 ANK3 SEMA4D IKZF1 TGFBR2 PTPRC FYN MYH9 PRKCH KLF13 RASSF3 SLC38A1 RIN3 AC016831.7 CD6 RPTOR MED12L FYB1 BACH2 ETS1 FLI1 BCL2 ARHGAP15 TG MCM9 STK17B AC008691.1 SUN2 PDE4D TRAJ28 CD226 PTPRO HOOK2 ACOXL UMAD1 AKAP13 OGDH UST HDAC7 RGS9 ATG5 MBNL1 BCAR3 HIVEP2 GPRIN3 ZNF131 RAP1A ITPR1 LINC02384 SH3PXD2A TIAM1 ZBTB2 AP000311.1 NKIRAS1 AL160408.2 EIF4G2 PPP1R10 MIR29B2CHG C15ORF53 ARHGAP26 TMEM87B RAB27A TTC33 TSGA10 SAMD3 RNF157 AC022126.1 CD82 LINC00649 MAP3K11 VOPP1 ATXN7L1 WWOX SORL1 ZFP36L1 LFNG ZFYVE28 RARA GPBP1 PVT1 CSGALNACT1 BORCS5 CELF1 MIR3681HG PRKCA ZNF217\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC016831.7 PTPRC KLF12 CSGALNACT1 AKAP13 AL139383.1 TG RHOF CHST11 RAI1 CDC14A AC068896.1 BCL2 RIPOR2 ADAMTSL4 RPTOR HDAC4 ATXN1 ARHGAP45 FAM19A2 RPS6KA2 EPS15L1 LNPEP OPRM1 JMJD1C HNRNPUL1 UTRN NCAPH2 ITPKB IL7R SAE1 ARID4B BACH2 NFATC2 FAM107B PNKP MFHAS1 ARID5B MPC1 ZBTB20 ARHGDIB ASTL SEMA4D NFKB1 AC011462.1 GATAD2A KLF13 BLVRB ANKRD44 C12ORF4 MARCH8 NDRG1 CDKN1B SORL1 OGDH HRH2 SOD2 PATL2 LINC01825 AC079313.2 HIVEP2 RAD52 HNRNPF LTBP4 GHITM GAK SEPT9 PTMA OSBPL3 UBALD2 ANAPC5 AC243547.3 AHR GBP1 HOOK2 TNFAIP8 STXBP1 RMI2 ABCB9 CEP89 CPEB2-DT ETS1 MYOM2 VPS36 IKBKB GPBP1 RBMS1 TMEM131L MAST4 DYRK1A FHIT KCNQ1 RFX2 MAML2 RTKN2 STK10 PACS1 YWHAQ ZCWPW1 TBC1D14\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: KLF13 PRKCH LIPA IKZF1 PDE4B HIVEP3 CDC42SE2 ITGA6 LINC01588 LINC00598 CGGBP1 MLLT3 FOXN3 TGFBR2 PCAT1 CCDC88C PIK3R1 ANKRD44 ARMH4 NIN FOXP1 BACH2 TRAT1 AC010894.3 TOX MIR3681HG SSH2 CYTIP MAML3 TNKS FAM107B ITPKB AC110275.1 POMT2 LDLRAD4 BACH1 TBL1XR1 FYB1 MAML2 CDCA3 CELF2 BCL2 FAM19A2 PPP3CA AKNA ADAMTSL4 AL035530.2 PYM1 TSPAN14 STAT1 OXNAD1 PVT1 NDUFAF6 SPATS2L UXS1 ARID5B ALDH1A2 RBMS1 TTI2 TNFAIP8 FAM102A MBNL1 FAM174B ZNF131 GRAMD2B SLC38A1 NBN AC079385.1 SOD2 ZNRF2 CSK ETS1 RBL2 EEA1 SMAD2 LRCH1 PCED1B STT3B L3MBTL3 AC016831.7 RAD51B PTK2B ST3GAL1 C15ORF53 CACHD1 TSGA10 ELMO1 IKZF2 TUT4 CHD7 TMEM131L ELK4 IL2RA GYPC DIP2B RASSF3 ST8SIA4 ATP2B1 SCML4 MGAT5\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH PATL2 ST7L UBAC2 ROCK1 BCL2 AL355916.3 AP000911.1 AL136368.1 ITPKB HACL1 FYB1 FAM102B B9D1 HSPD1 ZMIZ1-AS1 ZPLD1 CASP8 PIGK CDC27 INPP4B EBAG9 LINC02341 ARAP2 TSPAN14 MTR AL392172.1 AGO2 ZCCHC2 AC020911.2 BCL11B MDFIC MPP5 ELOVL3 TMEM245 SETD3 CRYL1 WDR1 CHRNA6 RUNX1 PTGER2 PDE4B CNOT3 RHOH AC096920.1 PRRC2B CCDC88C AC025263.1 OSTM1 SERGEF EGLN1 CNDP2 HUS1 LFNG SGMS1 HMGCS1 MIA2 TRRAP GNPTAB TRAJ28 TPRA1 NFE2L3 ZNF831 PRMT5 TMEM123 DGKH ATP8A1 INTS9 EML2 PDLIM7 SLC37A3 FBXL17 HSPA13 ARF4 SIAH3 KIF2A STT3B TIFA FBXO43 OGDH AL627171.1 RASSF3 ZGRF1 PCM1 ASH2L MPP7 FKBP5 IFNG-AS1 TANGO6 FA2H PCNX1 APOLD1 HBS1L PRKCB LINC01366 SBNO1 TRAF5 AL627171.2 TRIM35 SGK1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: BCL2 HIVEP2 ST6GAL1 BACH2 LINC00598 PIP4K2A TGFBR2 MAML2 SCML4 CDC42SE2 PCED1B AL390957.1 GLB1 TIAM1 GRK5 AHR HNRNPUL2-BSCL2 DCAKD EPC2 VMP1 HEBP2 CHFR AC016831.7 TMEM131L CELF2 CARD19 ITGA6 CFLAR PVT1 DUSP16 UTRN LEPROTL1 ORC4 MED12L TG MYO5C TBC1D5 DLEU2 BORCS5 CSGALNACT1 AC009126.1 PSIP1 PATL2 RB1 CHST11 FOXP1 ARHGDIB TRIP11 HECW2 SETDB2 ST3GAL5 STK10 CRTC3 MAST4 FAM19A2 CCNI2 RAPGEF6 CRADD TSPOAP1 RGS3 SAMSN1 MAP3K14 RFTN1 FKBP5 CPOX CNOT6L DUSP13 C1QTNF6 MAN1A1 PLCL1 FBXO11 CASP8 ITPR1 XYLT1 EVL ELOVL5 KLHL21 CROCC FMC1 PICALM ATXN7L1 NOSIP GALM FAM69A TMEM150B CCR4 ALOXE3 NR4A2 DOCK9 MARCH8 ZYX ERBIN USP12 RASSF5 RFFL NFKB1 ABI1 GSK3B ZNF639 RASSF3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 NFATC2 AC068896.1 TSPOAP1 FOXP1 CELF2 TCF7 ATXN1 DLEU2 AC009126.1 RTN4 TNFAIP8 IL32 RUNX3 KLF13 CIC FYN OSBPL3 SMG6 ELOVL5 AL691403.1 KCTD9 ARSG AKAP13 CHST11 SIVA1 MGAT5 AC024592.3 AC069368.1 DIP2C EIF4G1 ABHD15-AS1 LINC01588 ASAP1 LINC02332 PATL2 TRAJ28 FKBP5 TBC1D5 PRKCQ PRKCH TRABD2A TMEM131L HDAC4 PPM1B ACOXL ST8SIA4 PIP4K2A MAP3K3 HOOK2 JARID2 ETV6 NUB1 JAML FNIP2 SMIM20 G3BP2 CCDC66 AC009185.1 UMAD1 IL7R ZCCHC24 TRIM24 ZCWPW1 AAK1 CEP85L DLGAP2 ACAP2 APBB1IP ADCY7 INPP4B ETS1 SYNJ2 ZC3H4 NFKB1 MNT RNF38 AC022916.1 DNM2 RMI2 FYCO1 CYTH1 PHF19 AC034102.4 LFNG ZNF687 RASSF3 IGSF9B MCOLN2 PGRMC2 CCND3 LSM4 NSD3 SMARCA5 VPS13D ZGRF1 TRMO TXNRD1 TTC33 IL21R\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AKAP13 TNFAIP8 SEPT9 PITPNC1 ST3GAL1 DRAIC ATG5 HDAC4 UBAC2 SEMA4D VMP1 TEX264 RPTOR OSBPL3 PRKCQ LINC01126 BCL2 ITK PPP1R12A HDAC7 TPRG1 GSK3B LPIN2 AC016831.7 CLASP1 NEAT1 PIP4K2A FYB1 SFMBT2 DIP2B MED12L MGAT5 NFKB1 LINC01934 PREX1 SKI TG GNB2 CYTIP ATP2B4 RALGDS GRPEL1 RIPOR2 IKZF3 C15ORF53 AC009126.1 HIVEP2 P2RX4 RBM20 CEMIP2 SERINC5 L3MBTL3 CHI3L2 PDE4D DLGAP1 BCAR3 FAF2 FAM117A GAS2 RNF44 KLF9 CCDC88C GLB1L MYH9 MALT1 PLEC TRABD2A OARD1 SIL1 PALM2-AKAP2 MOSPD3 ARID5B AL139246.3 RAB1A PIK3CD BICRAL GSR LFNG ATXN7 WDR1 AL359736.1 CCND3 FRYL TMSB4X ACTB KLF13 RB1 EYA3 C9ORF16 ST6GAL1 SPEF2 FNDC3A RUNX2 KAT6B AC010894.3 ZBTB20 ERN1 SLC35D1 ARHGDIB ZNF487\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATXN1 RUNX1 RIPOR2 PTPRC CIC ST3GAL1 GRK6 AGO2 ZNF846 ARHGAP10 PITPNC1 ARHGEF3 SEPT9 SNTB1 LEF1 THEM4 MACF1 PPP2R5C RBPJ TPRG1 CDH23 GAS5-AS1 PRR5L NEDD9 AGFG2 SLC2A1 PDE4D TRAJ28 ATG5 MAP3K5 FKBP5 RUBCN MED12L ARHGAP26 PRKCH AHR SYNE2 AC009126.1 BACH2 TSPAN5 BICRAL CDC14A CCNI CDK17 TNRC6B EIF3H RAPGEF1 LCP2 NEAT1 UBAC2 DLEU2 BCL2 SH3KBP1 ATG16L1 PLEC GNG2 RPN1 SPRY4-AS1 NCOR2 FLNA FYB1 NLRC5 AP000787.1 AC007384.1 KIAA0319L GPR68 GTDC1 PATL2 ZFP36 IQGAP2 STK10 BTBD19 SPON1 DOCK10 BCL10 IKZF1 CD82 CDKN1A SPEF2 HMCES ITGB1 ZBTB20 TRIP13 CCDC9 AFAP1 CDC42SE2 MTSS1 DLG5 HDAC4 TRERF1 NAV2 ELL TEX264 KLF10 PDE4A HIRA FAM241A BCL9L IFFO2 MIB1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 MAML2 UBAC2 IKZF1 ELMO1 KLF13 PRKCH AC016831.7 TBC1D5 AKAP13 NFATC2 PTPRC PVT1 FYN STAT4 LINC01588 SORL1 LPIN2 EEPD1 PRKCQ PDXDC1 OXNAD1 RORA SEPT9 RPS6KA2 ZCCHC2 ZBTB20 ATG5 ELK3 LINC01934 BCL11B OSBPL3 NDUFV2 UMAD1 JMJD1C ARHGEF3 PTK2B SPG11 ATXN1 RPTOR ST6GAL1 AC016907.2 DUSP16 TCF7 C15ORF53 AC093423.3 ST3GAL1 PLXNC1 MCM9 MACF1 ZNF516 AHR ATXN7L1 LDLRAD4 TSGA10 PIK3IP1 LEF1 TRABD2A GATAD2A TNK2 ZNRF2 CCDC88C NCOA7 CCR7 GLB1 AC025159.1 PIK3R1 CHD6 TRAJ28 TECR RIPOR2 ARMH4 CDK13 DLEU2 SLC38A1 CLEC2D AC069368.1 NEAT1 TMEM45B CMTM7 H2AFV IL7R MBNL1 SLC1A4 TNIK ANKH CARS2 SH3BP5 CDKN1B HDAC4 LINC01126 SDR42E2 ARSG VPS13D PIP4K2A MAP3K3 BORCS5 MLEC INPP5A PDE4D\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LINC01126 ETS1 PPP2R5C FGFRL1 PRKCH CAMK1D NEAT1 ITGA4 MIR3681HG UBAC2 ELMO1 ATXN1 TNFAIP8 LIPA IKZF1 LARP1B PVT1 DIP2C TIAM1 BCAR3 SCML4 LINC01003 RAP2A SPEF2 GLB1 LINC01350 SNTB1 GTPBP1 TLDC1 RAB27A HIVEP2 PRPF40A TCF7 SEC31A HIVEP3 NOL4L AL390957.1 AC005775.1 ZBTB2 ARL4C RB1 ARID5B PYROXD1 SH3KBP1 DRAIC HDAC4 ZC3H10 AL451062.3 ASAP1 TTC39C REV3L AC009486.1 MAP3K5 MARK2 UTRN MYOM2 RAD51B AKAP13 DOCK10 CDC42SE2 ELF1 TOX2 LRRC8C-DT PAG1 CCR4 ACIN1 CCDC88C BCL9L LRIG1 DAD1 RORA-AS1 SERINC5 TLE3 TNRC6B CD247 STK24 MAP4K4 ATAD2 BCL11B Z84485.1 ST8SIA4 ZNF331 SVIL CAB39L DAGLA SGCE KSR1 WDR1 FBXO48 FOXO3 MALAT1 SIL1 GADD45B ADCY7 SARS2 IQGAP2 FAM160A2 ZMYM2 ST3GAL1 ABHD15-AS1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: INPP4B ITPKB AC016831.7 FOXP1 BCL11B BCL2 PIP4K2A ANKRD44 BORCS5 RAD51B MAML2 RIPOR2 TG CHST11 UBAC2 HIST2H2AC OARD1 IKZF3 TCF7 NEAT1 SEPT9 INPP4A PHF19 ARID5B HIVEP2 PVT1 ANKRD11 MACF1 KLF13 ARID1B AC010894.3 SLC39A10 MSI2 HSP90AB1 GNG2 NR3C1 CCDC88C CARS2 RERE ADAMTS17 GRK5 EHD1 AKAP13 ZMIZ1 SCML4 SERINC3 CDKN1B TRERF1 AC091114.1 SLC38A2 DRAIC RPTOR CCND3 NPAT GFOD1 TNRC6B CFL1 STAT1 ASAP1 IL6R AL137145.2 PREX1 STK10 PRKCH EVI5 CDK6 ARHGEF3 AKT3 GATAD2A HOOK2 LINC01588 PRKCQ AGO2 FAM174B ATP8A1 SERINC5 CASP8 ICK APOLD1 SAR1A UBASH3B BCL9 MAP3K3 PLAGL1 RFX3 RBMS1 CCDC114 RASSF3 DAAM1 RNF215 TIAM2 CXCR4 P2RY8 ARRDC3 AL355315.1 CELF2 BCAS4 CDC42SE2 CD58 LPP\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AGPAT1 CEMIP2 ZMIZ1-AS1 AFTPH CD96 CDC42SE2 AC145422.1 ZNF718 AL359736.1 HSP90AA1 AKAP13 HLA-B USP34 SEC22C ZFYVE28 PTPN1 WDFY2 SLC5A6 TGFBR2 PPP2R5C PPP3CA TNIK MIR222HG LACTB2-AS1 SNTB1 ZNF395 AL162377.3 LRRC8C-DT BBIP1 OXSR1 AC034114.2 CHD7 TES SMG6 SARAF HSPD1 G3BP2 SREK1 IQGAP2 RYR1 PARK7 TOGARAM2 AK2 BTBD11 MKKS AC005775.1 COA1 TMC6 ERN1 RALBP1 FAM85B ZNF131 PLOD3 AC010271.2 RUBCN PDIA4 PAG1 LYRM4 TBCCD1 NQO2 MFSD12 MCF2L GAS5-AS1 OSBPL11 SPTBN1 SLC7A6 ATXN1 GPR89B NDUFV2 JARID2 TTC33 GMFG CAMK2G SPICE1 PRR14L SAMD3 ACIN1 MKL1 PIK3CD IL32 VAMP1 ZBTB24 TLE4 CASP8 AC010271.1 GIMAP7 MRPS27 CCM2 MACF1 DSCAML1 ELMO1 SH3BP5 CAMK4 AC067968.1 TRAJ28 RNF111 VASP STK11 SGK3 IGFLR1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC016831.7 HIVEP2 BCL11B LINC00598 KLF12 FOXP1 ANKRD44 MAP3K5 TGFBR2 IKZF1 HECW2 SUSD6 MAML2 ITPKB IL7R MBP PIP4K2A FAM107B CCND3 FYN LEF1 FAM117A DOCK10 CHST11 ARHGEF3 RUNX1 PRKCH RAD51B SYNE1 SMG6 ATXN1 PPP2R5C RIPOR2 NFE2L2 NEAT1 ITK UBAC2 UTRN MAP4K4 CD2 CRYBG1 ARHGAP25 TMEM131L CD82 STAT1 CCDC88C FSIP1 AC093010.2 SAMD3 PDE4B IMMP2L TNRC6B CMIP ELF1 MED15 MDFIC JADE2 ATG5 RHOH CDC42SE2 JMJD1C ATM TRERF1 C15ORF53 PARP16 UBE2D3 PPP1CA BCOR NEK7 LINC00861 DRG1 FOXN3 PTPRE KPNA3 PATL2 PTPRC CDC14A DRAIC AL162377.3 GNAI2 LINC01358 ARHGAP15 SNRK YWHAQ PIM1 SELPLG OSBPL3 PRCP NPAT RANBP3 WWOX SPTBN1 INPP4B ST3GAL1 TG ADAM19 DUSP10 ARID1A NKIRAS1 CAMK2D\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 PRKCH RPS6KA2 UBAC2 CYTIP PNKP AC016831.7 LINC00598 MED12L RUNX1 KLF13 TMSB4X AC068896.1 IKZF1 HIVEP3 SPTBN1 HDAC4 FYCO1 SIN3A IKZF3 BACH2 ST3GAL1 CELF2 ATXN1 TIAM1 XPO6 JARID2 TPP2 PPP2R5C LINC01004 TCF7 CSGALNACT1 MAML2 RAD51B PXYLP1 CD226 MBNL1 TLE4 RUNX3 PITPNC1 IMMP2L TBC1D5 PDE4B IFNG-AS1 CDC42SE2 VOPP1 TRAPPC10 PUM2 UXS1 PDE4D ATG5 RPS6KA1 RFX3 RMI2 TRIO MAP2K3 PHF19 FAM214B ZNF141 LMNA STK10 AL163932.1 AAK1 GRK6 UBE2D3 PSMB1 AC096920.1 DCTN3 MGAT4A GPRIN3 ASB16-AS1 AC022558.2 TRABD2A LCP1 OGDH CD44 TSPOAP1 ARID1B ITK MAPRE2 FAAP20 IER5 SPRY4-AS1 TBL1XR1 EPB41L2 AL451062.3 MVB12B FRYL FKBP5 AKAP13 RAB11A ARSG RIPOR2 KLF12 C3ORF18 GPR68 PRKCA MEX3C LEF1 UGCG\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH BCL11B ANKRD44 STK17B HOOK2 PVT1 CDC42SE2 LDLRAD4 C1ORF112 AC007513.1 IQSEC1 TRIO IKZF1 ZFP36 MIR181A1HG OGDH TRABD2A HMGB1 AC068896.1 AL669918.1 ETS1 TEX14 OTUD5 APBB1IP LINC00598 ZNF132 CDC14A TNFAIP8 ANXA6 TTC33 DNM3 MXI1 PITPNC1 CD247 MBD4 TSPAN14 ICAM2 STK17A ICA1 KLF12 TLDC1 GRB2 BCL9 CELF2 SEPT9 UBALD2 C1ORF109 IMMT SARDH TLK1 TTC39B AC010894.3 CASD1 AKAP13 STAT3 KLF7 MIR3681HG PRKCB HIVEP3 CRYL1 COQ10B RHOH AC093277.1 IL7R PRRC2B JARID2 C15ORF53 NDUFV2 FYN OXNAD1 CDHR3 RNF216 ST6GAL1 SIRPG NTNG2 RAPGEF1 PPTC7 CENPM RASGRP1 SREBF1 AC234778.2 G3BP2 KBTBD8 ANKRD11 ATAD2B RCSD1 BICDL1 CFAP36 AC093423.3 SNTB1 EIF5A CETN3 THUMPD3-AS1 RARA TRAJ28 CRTC3 MTMR4 ADSL ZNF846 SMG7\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC016831.7 CTLA4 IKZF1 IL2RA PATL2 HIVEP2 RABL3 FOXP1 CD28 RPTOR ATG5 TSPOAP1 EVL SIN3A ABHD15-AS1 LINC00649 CELF2 VPS26C STK10 NCOA2 RORA RPS6KA5 RAP1GAP2 CORO1A FLNA AKAP13 VMP1 MIB1 DOCK10 STAG2 ATXN1 SYNE2 MIA2 SNX10 ATP2B1 SMAD3 UXS1 LPXN KAT6B INPP4B TG SERTAD2 ARID5B WDFY1 LCP1 GIGYF2 CDC42SE2 RHOH WWOX MGAT5 PTPRC NUP153 ANKRD44 MBNL1 ELMO1 DNAJB6 GLS BCL2 NFE2L1 PIP4P1 PALM2-AKAP2 SLAMF1 HNRNPUL1 PPM1B NEMP1 SARNP AL139807.1 ABL1 ARHGAP45 KIF2A CWC25 NCAPH2 RBMS1 SEC22C TRIP11 TTC39C LIMS1 ATXN3 MRPL42 ATP5MC2 TRMT10A GLB1 CACUL1 PHF19 GSTO1 TMSB4X AC096920.1 RBM23 EIF2AK3 CTC1 STAMBP NUMA1 AC107214.1 USP8 CYTH1 COX7A2L P2RY8 UBE2N RFX2 CXORF65\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RBM15-AS1 AC010894.3 PIP4K2A MBNL1 FOXP1 TRABD2A ARHGAP26 LINC01588 ITPKB PRKCH AMN1 CBLB SH3BP5 CHST11 TPR CDC42SE2 CFLAR SPTBN1 CYTH1 THUMPD3-AS1 ANKRD44 PVT1 RAP1A ARID5B MED13L ARHGEF3 FAM117A FOXN2 AC016831.7 VMP1 PJA2 SOD2 GNG2 NEMP1 SEC22C RETREG2 CD247 ATP2B4 KLF13 ITPR1 IKZF3 STT3B GHITM MAML3 RPTOR MIR3681HG STK17B MGAT5 CCDC88C PDE4D ANKRD11 SEMA4D HIVEP2 CDS1 LRRFIP1 ETS1 LIN7C CUL3 EPHA4 NAV2 FRYL PSTPIP1 AC108002.1 SERINC5 STIM2 CDK6 STIM1 SERTAD2 ECE1 PPP2R5C SLC38A1 ALOX5AP IRF2 CDH23 UBE2D3 ISG20 OGDH FAM222B ELMSAN1 AC008403.1 FAM76B SCML4 DEGS1 TCF7 AC068896.1 RAPGEF6 TSPAN14 GNB2 ARL4C MCFD2 RFX3 PYM1 AL928654.3 CFL1 CORO7-PAM16 ST6GAL1 FYB1 RORA SRPK2 GLS\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 ARHGEF3 CYTIP PDE4B TNFAIP8 SCML4 CARS2 CEMIP2 UBAC2 PLCL2 FOXP1 ATG5 SPTBN1 LEF1 FAM107B ITPR1 ARID5B HDAC4 SP4 PTPRC KLF7 CUBN GTDC1 PAG1 PPP2R5C ATXN1 DUS2 NFATC2 PRKCA FYN BFSP1 MKL1 NFKB1 ARHGAP15 TNRC6B DNM2 LINC01588 TGIF1 TRABD2A MNT AC069368.1 GNG7 STT3B ARID1B AC020743.2 FLI1 RUNX2 CSK TGFBR3 KLF13 ATP2B2 MBNL1 BCL2 SNRK ACOXL CDC42SE2 HIVEP2 RIPOR2 ZFYVE28 CD69 ST6GAL1 ZDHHC14 AKAP13 CSGALNACT1 SEMA4D TRAF3IP3 EPB41 CRYBG1 SIN3A RAB27A DAAM1 CASP9 AP000311.1 MACF1 AC006369.1 INPP4A MED12L ESYT2 APBB1IP ZBTB25 ITK DLEU2 TIAM1 SMARCA2 BCL11B TAB2 GSE1 AHR CDC14A B4GALT1 CFLAR SEPT9 HIVEP3 XPO1 ZNF365 SETBP1 ETV6 MIR29B2CHG PARP16 IKZF1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CAMK1D LFNG FOXP1 ARID5B LINC02341 AKAP13 ARHGAP15 GRK6 IRF2 PPP3CA ARMH4 STAT1 BCL2 SERTAD2 CFL1 ANXA6 CYTIP GNG2 LRRC8C-DT ARHGEF3 FCRLB AL390957.1 RNF38 GNAS ST3GAL1 ETS1 CCDC12 RNF125 ZBTB38 FYB1 ZBTB20 PRDX3 HDAC4 DENND4C C1ORF112 MYH9 IDH1 RAC2 NFIA LINC00578 ATP2B1 SPRY4-AS1 AC068896.1 PVT1 POLR1A LINC01588 RASGEF1B RASA1 ARL15 PHF12 ABTB2 ISCA1 ACSF3 GLS SLAIN2 EPB41 ITK P2RY8 TATDN1 DNM3 CD53 PLEC ANKRD11 CPOX SPECC1L AFAP1 RPTOR CCNI CNOT1 KCNIP2 C15ORF53 RUNX1 NEMP1 PDCD10 PNKD DCLRE1C AL035530.2 TPD52 AC016831.7 CD96 DOCK10 CACYBP CARS2 CMTM7 UHRF2 WDR12 HSPB11 SBNO2 AL023755.1 GLB1 CDK6 TMED10 ANKMY1 BORCS5 SNAP47 B3GALNT2 LRCH1 MAML2 UBASH3B RSU1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PATL2 EPC1 TLK1 KIAA0895 TMEM106B GRB10 RUNX1 FAM117A IGF1R ABCB1 CACUL1 LINC01629 ACSS1 TSGA10 HDAC7 LTA4H UMODL1 HYKK RSPH14 AC017083.3 ZBTB2 ANP32E SEPT9 C1ORF112 MAML2 SH2D3C EMC9 SPTBN1 HIPK2 HSP90AA1 IKZF1 XYLT1 LPIN2 ARID1A MCM9 SYNGAP1 AC068896.1 FBXL19 LCT TGFBR3 AC073934.1 TTI2 SULF2 LMNA HMBS MXD1 PITPNC1 C12ORF75 ABL2 CD44 FIGNL1 UBAC2 TPM4 WAC-AS1 TIAM2 RNF122 CHRM3 SUN1 IFNGR2 SLC3A2 PPAT PXYLP1 ALDH7A1 APC RHOH MRPL44 FOXN2 MTHFD2 CYB561D1 MGAT5 RASGEF1B ARHGAP15 MAP3K14 RAB27A HACD2 AC005224.2 AC016831.7 DPP4 NTMT1 ITGB2 PACS1 SLC12A6 SCCPDH FYN PEPD KHSRP KPNA5 RPN1 LIMA1 AL136531.2 TMEM56-RWDD3 SP1 SPON1 NEB LPP ASXL1 TNFAIP8 RAD52 ADAM11 GYS1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH RUNX1 UBAC2 SCML4 KLF13 AKNA RIPOR2 BCL11B AKAP13 LINC01126 CD96 SH3KBP1 PTK2B ITK CCDC88C FYN FGD3 SEPT9 FAM107B MBNL1 FRYL IL7R TNRC6B LINC02341 HIVEP2 RASA3 ARHGAP25 ZBTB20 CYTIP FOXP1 TNFAIP8 LINC00598 INPP4B TRAV14DV4 MGAT5 RASSF3 MNT LINC01588 RAB43 ESYT2 RORA TPRG1 RORA-AS1 TPRA1 SH3GL1 MACF1 NEMP1 PABPC1 MAP3K3 ARHGAP15 AC068896.1 CD226 BACH2 DOCK10 FKBP5 TRAJ28 ATXN7L1 PHF19 TMSB4X JMJD1C PIK3R1 AC016831.7 NHSL2 CBLB HDAC4 AL359736.1 MKL1 PCAT1 SEMA4D CDK6 CELF2 KLF12 RAD51B ACIN1 EGR2 TTC33 MDC1 NFE2L2 ELF1 KCNQ5 PAG1 ETS1 H3F3B JOSD1 IL2RA SMG6 CXORF65 CD44 ARHGEF3 ZBTB14 LCP2 MTMR12 RPTOR AC078923.1 CAMK1D CUL1 PLEKHF1 GRK6 CMTM8 ATG16L1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HDAC4 MICAL2 ZDHHC5 MGAT2 AKNA HS3ST3B1 SPEF2 RGS3 IKZF1 OSBPL3 LINC00598 CCDC88C DLEU2 ARHGAP15 PITPNM2 ETS1 SLC1A2 NCK2 STIM1 AC069368.1 SERINC5 FAM117A ZNF736 CATSPERG ITPR1 HIVEP2 RUNX3 AL138720.1 SDR42E2 RGCC WDPCP CHFR OXNAD1 SKI SEMA4D CPOX AC008937.1 SPOCK2 EPAS1 KIF27 EPC1 MAML2 AC008764.1 LINC02073 ATG5 TUBA4B TESK1 RHOG ZCWPW1 HPS5 BPGM PRKCA MCM9 RSAD2 AMN1 NT5DC1 PRKCH NUCB2 PWWP2A GIT2 CHRM3 ATXN1 VCL AL160408.2 CDK19 UBE2D3 PRDM2 PALM2-AKAP2 PTPRC NFIA TMEM150B SH3GL1 AHR FOXP1 PATL2 NR3C2 PLRG1 MXI1 PLEKHF1 CSNK1A1 ABCD2 UBAC2 COX7A2L FNDC3A ATXN7L2 HIPK2 INTS3 PAG1 NPAT RHOF IGF1R CRTC3 PKIA-AS1 OSBPL8 ARID5B STK17A METTL8 SNRPD2 MGAT5 NFE2L2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 TRAJ28 INPP4B CYTIP RIPOR2 AC016831.7 ITPR1 UBAC2 PATL2 ARHGAP15 LINC00598 ARID5B LINC00861 KLF9 LIPA ATG5 PTPRC MYO5A HIVEP2 CD47 GPRIN3 BCL2 TNFAIP8 IFFO2 CASP8 FAM107B DRAIC ANKRD44 AKAP13 AL390957.1 BHLHE40-AS1 MAP3K5 AHR LINC01934 PDE4B DLEU2 IFRD1 CCDC12 UBASH3B MLLT3 ARHGEF3 RPS6KA2 PCED1B SP4 FKBP5 AC096920.1 EPS15L1 ZSWIM6 RMI2 AKNA SERINC5 AC009185.1 TNRC6B CDC14A C1ORF112 AC018647.1 SAE1 HERPUD2 ETS1 ING3 STIM2 PRKCA NCOA6 CFLAR PRKCH CAMK2D TBC1D2B PCGF5 LCP1 ZMYM2 AC007384.1 LINC00426 TECR SLC22A23 ADD3 P2RY8 PTPN1 LPP SCML4 ANTXR2 CCSER2 ST6GALNAC3 ATXN7L1 STK10 RASSF3 NFATC2 RORA PNRC1 RARA AC116366.3 ZBTB7B ARID1B GATAD2A SIAH2 ELF1 CLEC16A MAML2 HDLBP COQ10B PTPRK\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TNFAIP8 ITPR1 ZNF131 AKNA UBAC2 CELF2 RUNX3 CCND3 FOXP1 ARID5B PIK3R1 ARSG ATG5 LINC01004 OGDH TLK1 IKZF1 PHF19 RHOH TRAPPC6B KLF9 AC025682.1 CAMK1D BACH2 AL691403.1 NCOA2 ZNF414 BICDL1 RPS6KA2 TIAM1 PDE4B BNIP2 AC022182.1 TC2N ANKRD23 ABLIM1 TSTD2 ELMO1 FOXN3 AL356234.2 KCTD9 ID2-AS1 ASB2 PRKCH CDC14A RIPOR2 PCYT1A TBC1D5 ATOX1 LINC01588 ANKRD44 GSE1 EPC1 RAB11A LINC00598 WNK1 EIF3H ARRDC3 FAM117A ANXA2 ANTXR2 RASA1 PPM1B HIVEP3 REEP5 DOCK9 RNF38 ISM1 AC107214.1 DOCK10 CAMTA1 RALGDS AL390957.1 TNRC6B CTNNBL1 PRKAR2B MGAT4A MYOM2 KLHL5 APOLD1 RXRA ZNRF2 BCAR3 CEP170 NUDCD2 ARMH4 STIM2 SLC11A1 PDE8A ZFP36L1 SIAH2 MLLT3 ACTB LRRFIP1 LYSMD2 LIPE-AS1 TMEM106B LRRC8C-DT AC076966.1 COA1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATXN1 BCL11B KLF10 SUB1 ETV6 AKIRIN2 MAML2 PDE4B ITGA6 RASGEF1B ARHGAP5 ASH2L CBLB INO80B LIPA TMSB4X STIM2 BACH2 HMGB1 ZNF771 HELQ DSEL TTL ZNF136 CDC42SE1 BCL2L1 CMC1 AL159163.1 WBP11 TMX3 UXS1 PATL2 MAPKAPK2 UBE2D3 RBMX2 CUL5 CEP350 MAP3K1 NPC1 NDUFV2 PXT1 CENPT AC024592.3 CEP290 ARHGAP31 SERTAD2 RORA-AS1 ITM2B DESI2 SSH2 CRYL1 KLHL2 ATP5F1A AC117394.2 AF241726.2 HERC1 SYNJ1 IQCG KIF1B PER1 RNPEP ANP32A ADGRV1 ZNF397 DNMT3A LINC01301 ADTRP JAK1 DOCK4 PDE7A GBP2 STAT3 CENPL TFB2M FOXO3 JAK2 TSPOAP1-AS1 BHLHE40-AS1 ZCCHC2 MBP HIVEP1 ZNF140 CAB39 ZFAND3 DOK2 CRY1 HEBP1 RASSF3 AL160408.2 CASP8 SH3KBP1 INTS10 PPP2R3C HIVEP2 AL133551.1 PTPRM GPR157 RPA2 CMSS1 IKZF3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC016831.7 RUNX1 HIVEP2 CDC42SE2 TNFAIP8 UBAC2 INPP4B ATXN1 FYN GLB1 CHST11 AKAP13 FAM107B TIAM1 TNRC6B TSPAN14 ELMO1 TRABD2A PRKCH GNAQ AUTS2 IKZF1 SEPT9 SEC22C SYNE1 TTC39C RPTOR RIPOR2 BCL11B ZFP36 AL031599.1 PPP1R16B PHF19 SMG6 LINC01588 LINC00598 PRRC2B ST3GAL1 SLC4A7 ANKMY1 TRANK1 MGAT5 CDH23 GRK5 FYB1 TRERF1 UTRN H3F3A ARHGAP26 MBP SPOCK2 LDLRAD4 THUMPD3-AS1 CCDC12 NEMP1 MAP3K5 CDKN1B SUPT5H TNIK ZFP36L1 ANKRD44 CYTIP CLTC UBA3 TECR ECE1 UBASH3B MXI1 PPP1R2 AL390957.1 AL359736.1 VOPP1 AFF1 GATAD2A EPC1 P2RY8 CD226 ST6GAL1 WNK1 CPOX ARHGAP15 ARHGEF3 AL031727.2 ZNF831 SYNE3 CAMK1D KIF2A ELL LRIG1 AAMP HOOK2 SIN3A ATG16L1 LIMD1 HECTD1 ARSG AL031056.1 SEMA4D RHOH NFKB1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CDC42SE2 PIP4K2A FOXP1 IKZF1 UBAC2 ITK SEPT9 ITGA6 FYB1 RAD51B HIVEP2 RUNX1 LIPA HDAC4 KLF12 GPR68 STAT1 IMMP2L TNFAIP8 PRKCH UTRN ATXN1 RIPOR2 PCAT1 NCK2 PTPRC SEMA4D TNIK STAG2 LEF1 ASAP1 TM9SF2 SNTB1 FGD3 PNPLA8 TNK2 CYTIP INPP4B CDH23 RPTOR CNTRL AL138752.2 ANKRD44 HECW2 RHOH PLCL1 PRKCZ PDE4B ELMO1 SERTAD2 GRK6 LCP1 ZCCHC24 AKAP13 ETV6 TBC1D5 AP3M2 P2RY8 BCL11B TRANK1 STK17B ESYT2 TSC22D1 ICA1 ZNF217 AC010894.3 CD96 RAPGEF1 PLEC RASSF3 RAB43 AC079313.2 PVT1 AGPAT3 ARHGEF3 PAG1 BCL3 FBXW7 SKA2 MAN1C1 MIR3681HG IRF2 TIAM1 CELF2 FYN CSGALNACT1 LRIG1 AC016831.7 MGA LINC00649 MLLT3 EPS15L1 PRKCB ITPKB SCML4 TNIP1 FKBP5 FAM107B RHOF NDUFV2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RIPOR2 MIR3681HG ATXN1 KCNA2 PBX3 CDKN1B FOXP1 MEX3C STK10 DNM2 IL16 UBAC2 AC022217.3 LINC01588 CCDC90B SCML4 AC008105.3 FAM107B SFN LDLRAD4 NEAT1 SMAP2 NFE2L2 TIAM1 COQ8A MBNL1 CROCC FAM160B1 PTGIR MAST4 RAD51B SEPT9 AL121748.1 CDCA3 OPRM1 OSBPL3 ALDH7A1 IL7R HOOK2 ZNFX1 G3BP2 CAMTA1 RPS6KA5 ZNF331 RSU1 WDR74 BIRC3 FAM76B BCL11B CPOX TNFAIP8 SH3BP5 CD58 C9ORF72 AC243960.1 TRAJ28 AHNAK AKAP13 RB1 SMIM35 RBPJ PTPRJ CEMIP2 AC020743.2 CNPY3 MIDN CMIP HECW2 AC011747.2 PAQR8 RUNX2 FLI1 ATP8B2 FRY AL355315.1 RHOF EHD1 AC012560.1 LINC02100 TMEM192 COL15A1 TRAF3IP3 SARS2 TRIM5 AC092634.5 ERGIC2 TXNRD1 RPS19 MLLT3 MARK2 DNAH8 SH2D2A DDAH2 AP3D1 ARHGAP18 MCM9 CD6 FBXO48 ARSG ELF1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 UBAC2 DRAIC FYN RPS6KA2 BCL2 CCND3 CD96 CARS2 TNRC6B CELF2 ANKRD44 RPTOR PRKCA ITK SORL1 ATXN1 LINC01934 ETS1 SOD2 AC068896.1 PRKCQ CASP8 PTPRC EIPR1 OSBPL3 CDK6 ITPR1 AC016831.7 MYO19 SEPT9 MAP3K3 RASSF5 PIP4K2A MGAT5 HNRNPL CDC14A NFATC2 IQGAP2 G3BP2 LINC01588 MAP3K5 ZBTB20 NEAT1 PRKCH FYB1 RAPGEF1 MBP GRAP2 ARHGEF3 GPR68 POU2F2 RORA-AS1 AL359736.1 STK24 CPOX MAPRE2 SUPT16H TXK EHD4 OXNAD1 CFLAR YWHAZ MPP7 PTK2B EVL ITPKB SMARCA2 AP000311.1 MLXIP LRRFIP1 SRP14-AS1 LCP1 CD247 P2RY8 PRR5L ARRB1 RASA1 HIRA CDC42SE2 LINC00598 SMIM13 MKLN1 LEPROTL1 LINC00649 PSMG1 JMJD1C RERE PVT1 DOCK9 ITPR3 BCL9L AC010894.3 TNFSF10 ATF7IP PLCXD2 DAAM1 KIAA1671 ELF1 STIM1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CYTIP DOCK10 TNFAIP8 LPIN2 KPNA3 EIF2AK3 KNL1 AL031599.1 UBAC2 RIN3 TMPO CPEB4 STK17B SLC9A1 PTPN22 UPP1 HDAC4 CDH23 STIM2 SGCA SUSD4 DDX18 SPAG8 TUBA1C FKBP5 AC007728.2 CHURC1-FNTB KMT2C RASA2 AC093010.2 FNDC3A STRN3 PNPLA8 PIP5K1B LINC00598 MAP4K1 RPTOR SWT1 TNRC6B ATP7B TGOLN2 RPL36 PDS5B MBTD1 ALDH18A1 CENPL ASIC2 CS KHDC4 LY9 PACSIN2 RAC2 SLA2 CARM1 SERBP1 FLT1 RFX3 EBPL WNT3A PABPC1L RASA3 FBXO31 LINC02068 NUDCD2 ARHGEF3 SMIM2-AS1 CNOT3 SGK1 LINC02179 NCK2 ARF6 TBCCD1 MCM3 TBC1D8 NDUFV2 DPH2 SUGP1 ZFYVE28 HIF1A-AS2 TM2D1 TMEM123 MED20 RAB30 MDFIC SLC4A2 DBH GPBP1L1 WNT3 PDHA1 RAPGEF4 MED16 HDAC7 POLD2 DLEU2 ANK1 RNF175 TERT PSMD6 MARCH1 TAB2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 CYTIP BACH2 PRKCH TBC1D5 PLXNC1 ST3GAL1 MYH9 TNRC6B ARHGAP25 FYN SLC25A42 PPP2R5C DOCK9 ATXN1 NCK2 SEMA4D CD44 PVT1 LINC00598 KSR1 FOXP1 AC104123.1 UTRN ANKRD44 SYNE1 ADCY7 CELF2 LINC01934 METTL23 TGFBR2 NOL4L TLE4 TET3 IMMP2L VOPP1 LRIG1 OGDH DRAIC RAD51B C1ORF174 PRCP SEPT9 MGAT5 FOXN3 MBP SLC45A4 C15ORF53 SGMS1 NAIF1 KIAA0319L ATG5 CEMIP2 STK10 BCL2 HDAC4 P2RY8 KLF12 CHFR AL023755.1 STIM1 CDC14A BCOR ZNF831 AC093423.3 IRAK2 NOSIP PITPNM2 CCDC88C TNIK SESN1 UST ZNF609 IL7R SAMSN1 LZTFL1 AFF1 SLC25A26 ARNTL MKL1 HIPK2 ARHGAP26 ZNF367 TTC39C SH3GL1 AC096746.1 ZNF217 C1QTNF6 GNG7 VPS13A LINC01358 ERH FAM49B MICAL2 SYNE2 MAN2A1 INTS9 IL21R NCOA2 PKD1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 CCDC88C CYTIP HIVEP2 RUNX1 RABGAP1L LRIG1 LEF1 MBNL1 PRKCH TIAM1 CDC42SE2 PVT1 PRKCQ CDC14A CD247 AC016831.7 TTC33 CUBN SEMA4D UTRN IL7R CD82 UBAC2 AL356215.1 PHF19 ARMH4 IKZF1 PIP4K2A CPOX INPP4B HDAC4 ANKRD44 ARID1B SERINC5 AP000311.1 C15ORF53 ETS1 LRRC8C-DT RIPOR2 SNX9 PCED1B WNT10A ZC3H3 ARHGAP25 BCL2 MAP4K4 RANGAP1 IGF1R CDHR3 C8ORF37-AS1 ATXN2L GPR68 CARS2 ATG5 ZBTB2 SERBP1 TRAT1 RUNX2 CYP20A1 FYB1 PITPNC1 AC024592.3 PPP3CA ARHGAP15 RUBCN BCOR ATG16L1 CCDC32 TRABD2A BICDL1 RTN4 ZC3HAV1 ELMO1 ST6GAL1 FYN AKNA RBX1 SIN3A EPB41 FAM76B AL159163.1 NDUFV2 MFAP3 BCL11B MKLN1 NUDCD1 AL133523.1 SECISBP2 MCM9 ECE1 AC087239.1 BIRC3 FBXL19 PAG1 MPC2 PRKCB USP36 STK10 JOSD1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 PRKCH AC016831.7 ANKRD44 AC099063.1 AKAP13 AL121594.1 TCF7 CMTM7 MIR3681HG AC068896.1 FYB1 MAST4 AC093010.2 VPS13D RAPGEF1 CCDC69 TSHZ2 ARHGAP26 ATP6V0A4 ITPR1 LINC00598 IGSF9B HIVEP2 POLR1A TIAM2 PTPRJ MBP SEPT9 SEC22C TMEM131L CNNM4 YWHAZ ARHGEF3 MNT KAT6B MED12L UBE2D3 NFATC2 STIM2 ITPKB NAIF1 TSPOAP1 MAML2 ARHGAP25 INPP4B OXNAD1 CDK6 ARHGAP15 TRIM8 GLB1 RNF4 G3BP2 NLRC5 DENND2A CFLAR DDX39A ARHGAP21 OTUD5 RNF125 C1ORF174 HIST2H2AC AFAP1 KHNYN PCED1B RASGEF1B ARAP1 OGDH RAD51B GSK3A FOXP1 TLDC1 RHOH FYN RMI2 LIPA BCL11B DEK FOXN2 SMAD3 ZNF318 C1ORF112 LINC01934 CUBN UBAC2 RASSF3 ELMO1 ST6GAL1 CDC73 ATP8A2 ITGA6 AC016907.2 CASP8 PXN HIST1H2AH TRAJ28 HBS1L CUL1 AC025283.3 CNOT6L\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 NEB RUNX2 BACH2 AL162311.3 SNTB1 BCL11B RASSF5 EPHA4 ELMO1 KLF7 NUMA1 EPS15L1 ANO10 RPTOR LIPA SPG11 NEAT1 HDAC4 LCOR EPB41L4A PUM1 SIN3A NDUFAF6 PPP2R3B SLCO3A1 GRK6 COPG2 C12ORF49 CDC42SE2 USP10 PLA2G12A MARK2 ZNF862 SLC37A4 RAB11FIP2 TRAK2 PSMD3 EMB RUNX1 ZNF736 GNAQ RNF38 ATG5 PDCD6 ZNF33B SMAD3 NFE2L3 DOCK10 ADK SAP18 SUGT1 FSIP1 MBP KCNMA1 PPP1R18 MORF4L2 C16ORF72 TRMT1L RAPGEF1 ELMO2 PLEKHA2 EME2 NKTR AC016831.7 HECW2 NFKB1 ESYT2 PDE4D SLC14A2 XPOT CD226 MAP4K4 PIP4P1 RPS6KA2 MDC1 RNF44 LAMA2 SCML4 PSMB1 LINC00299 ZNRF2 MAP3K7 SRF AL035530.2 DCAKD FIBP SLC17A5 CSNK1G3 PHLDB2 PYGM DEAF1 PLCL2 REV3L ACACA MIR3681HG SGK1 HSPA13 EIF3H ARID1B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARID5B ANKRD44 MXI1 CD247 RIN3 TSHZ2 TNFAIP8 STIM1 AC016831.7 PRKCH IKZF2 FAM117A LRRC8C-DT PAG1 RUNX1 IGSF9B RMI2 RBM15-AS1 SERTAD2 ALOX5AP WDFY2 CBFA2T2 NRL KLF13 PBX3 TRABD2A TIAM1 CAST COTL1 CDCA3 TMEM131L STK32C RNF38 BCOR RBMS1 AL355512.1 MBD6 VAV3 LETM1 LCP1 AC007163.1 AP001025.1 ELK3 TG AP005717.1 LINC00662 UTRN CDCA4 RARA ST8SIA1 STYX AC073343.2 TOX CLEC16A AC068896.1 PNPLA8 CD53 CCDC32 RHOH HDAC4 ETS1 C1ORF112 CFDP1 IDI1 TFE3 HIVEP2 UBE2D3 ARHGEF7 NCK2 ZEB2 LRIG1 CASC11 SMARCA2 MGAT2 AP3M2 SLC25A28 SGMS1 CELF2 SLC30A1 GLB1 NBN TOPORS PREX1 RORA-AS1 PARD6B TMED5 ARSG MPP7 CSK TBC1D8 ABHD2 NSD3 ABCB9 XYLT1 DPP4 AHCYL2 CMSS1 INPP5A TRIB1 MAML2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 ARHGAP26 FYN ANKRD44 MAML2 AHR AL390957.1 FSIP1 RIPOR2 CYTIP LINC01588 CCDC88C MTSS1 CAMK4 NFATC2 RUNX1 PLXNC1 VOPP1 ATXN1 BCL2 MAN2A1 ERCC1 PATL2 PTPN2 PRKCH TTC33 PTPRJ GTPBP6 AKAP13 CDKN1B CEMIP2 NIN PRKCQ UBXN11 ZMIZ1-AS1 IKZF1 GATAD2A LINC01358 UMAD1 RPS6KA2 SMARCA2 CHST11 OASL SLC7A5 LINC00598 ETS1 NCK2 NEAT1 LINC01135 TRAJ28 JMJD1C HERC1 ATXN7 PDE4B ARHGAP25 RCL1 AC093010.2 MTO1 STAT4 BATF ZSWIM6 INPP5A MAP3K3 LPP EPC1 SGMS1 RB1 AL357060.1 CD96 FAM69A NSMCE1 BCL11B KCTD9 GTDC1 RALGDS ARHGEF7 C15ORF53 UBAC2 TRABD2A MBP SEPT9 SH2D2A LINC02029 FYB1 OPRM1 HIVEP2 ITPR1 SH3BP5 PPM1B UTRN PRKAR1B AC011498.1 HOOK2 LY9 TMTC4 MAPRE2 SERTAD2 NXPE3 TLE4 TMEM131L\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH RHOH ARID5B HDAC4 LINC01588 GRK6 TSPAN5 TSPOAP1 ATXN1 RPTOR AKAP13 FYN PREX1 GSE1 NSUN6 EPC1 SEMA4D TPT1 MIAT GRK5 ACTR1A FBRS STIM1 MED13L HIVEP2 TIAM1 ZEB1-AS1 LINC00598 DLEU2 LPIN2 FAM43A RAD51B UXS1 NSD3 TBC1D5 INPP4B UMAD1 ST3GAL1 LPP LINC01934 PCED1B AC009486.1 SPTBN1 ANTXR2 MTHFD2 MGAT5 LEF1 FAM107B FAM117A CNTRL IL7R NBN ORC4 ZBTB20 ANKMY1 AC034114.2 PPP2R5C METTL8 NEAT1 ZNF846 DRG1 RNF216 PYM1 MKL1 AC022182.1 CPOX CELF5 USP3 COX10 PTPRE DOCK10 MDM4 FNBP1 CMSS1 DGKZ PHF19 BCL11B SEPT9 MACF1 ARF1 ELF1 ST6GALNAC3 SSH2 MYH9 MGAT4A PTK2B HDDC2 DIP2A MTSS1 RIPOR2 AAK1 CITED2 TRMO FAM19A2 CYTH1 CUBN FBXL19 EMC9 SH3BP5 WDR82\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CSGALNACT1 AC016831.7 FOXP1 BORCS5 RUNX1 TSPAN14 ITPKB TRAJ28 SEMA4D RAD51B ATXN1 MAML2 FOXN3 BICRAL TTC33 LINC01934 PTPRN2 TNFAIP8 BCL11B IL16 CDC42SE2 PLCL2 ETV6 IKZF1 GNA15 TLDC1 ATP2B2 RB1 BCL2 NCK2 ATG5 ABLIM1 CMIP AHCYL2 NDUFV2 CYTH1 NRL AKAP13 ZNF652 LRIG1 FAM117A CMTM7 HIVEP2 STIM1 HIVEP3 CELF2 CDC14A CSNK1E PRKCH CD6 SUSD6 MICAL2 LEF1 DNM2 AC006369.1 RBM23 TG MBP MXI1 AL390957.1 AHNAK KDM4C TUBA4B AC013270.1 CROCC TOX2 NCOA2 NOL4L ARL13B LINC02341 CAMK1D STT3B GM2A FIZ1 ANXA6 DOCK10 MATN1 CYTIP TGIF1 HDAC4 AIP RTN4 RPTOR LETMD1 HDAC7 DMAP1 NR4A2 ETS1 AL451062.3 ALDH6A1 CAND1 NIFK-AS1 ELF1 LINC01588 CNOT3 IL7R STK40 CBR4 AC068896.1 ZNF77\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RIPOR2 CDC42SE2 IKZF1 AL390957.1 ITK ITPKB TCF7 LINC00598 MAML2 TIAM1 TRMO HDAC4 FOXP1 AC068896.1 HIVEP2 GRK6 PPP2R5C SEPT9 ATXN1 MBP SORL1 ST3GAL1 PHF19 CDC14A ARHGAP15 FBXL19 FYN AC010894.3 FAM107B CEP85L TSPOAP1 RBPJ PPP1CA TMC6 TRABD2A PVT1 KAT6A ZFYVE28 AKAP13 RAPGEF1 TNFAIP8 FLI1 UBAC2 BACH2 AL133523.1 P2RY8 SEMA4D HOOK2 AL049869.3 PCAT1 MAML3 CD28 EPS15L1 RUNX3 TLDC1 SCML4 ARHGEF3 GRK5 SPAG7 MCF2L2 FYB1 AP000787.1 FOXO1 KLF7 GRPEL1 PTMA ZFP36L1 ANKRD44 JARID2 UMAD1 ZBTB2 CHD7 PDXDC1 AL357060.1 SOD2 ELMO1 PRKCQ LPIN1 ARMH4 DLGAP2 PRKCH LINC01588 RUNX1 BRF1 ARHGAP45 KDM3A RHOF CARS2 INPP4B CUBN KANSL1 CD226 NFIA CD82 ATXN7 LINC02341 STAT1 ZC3H4 MAP4K4 AC079313.2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CEP170 TSPAN14 MACF1 NR3C2 PNPLA8 SMAP2 NBN MLLT3 LMO4 AL023755.1 WAPL AMOT SNRK NLK IQGAP2 PPP3CC BMP2K TRIM5 NDUFA4 KLF13 STN1 PINX1 RBMS1 JMJD1C LINC02427 AL137145.2 AC011455.1 LMAN1 SCYL3 TENT5A DNAJC3-DT CYREN PUS7L ATXN7L1 SSBP3 ZMIZ2 ISM1 ANKRD46 RNF145 EGR4 ICK ZNF138 GACAT2 CWC22 ATP6V0A4 BCL2 DSE PIK3CD AC118549.1 EHBP1 SLC25A17 FNIP2 RALBP1 SERINC5 SNTB1 TPK1 RHBDD2 IMMP2L NDUFAF6 IRF2 CHST11 JADE2 SPECC1 L3HYPDH LDLRAD4 KCNA2 MSRA MARCH6 SCAF11 LEPROTL1 SPEF2 AC073517.1 GGCT CDON CAMTA1 SLC7A6OS MTR NFATC2 GCA DOK2 FAM83D MIR3142HG DEK PHF19 HNRNPD OTUB2 SLC30A7 CDK6 ZNF555 AL158211.3 NIFK-AS1 GOLPH3 GNG2 BCAT1 SP4 OXNAD1 DPH3 REEP5 ZC3HAV1 KRAS\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FAM107B PRKCH LINC01126 CDC14A ZFP36L1 HDAC4 ETS1 ITPKB MICAL2 CBLB AC068896.1 STK17B PLCL1 LINC01588 DNMT3A CDKN1B ARMH4 ATXN1 EIF2AK3 CHST11 MBP HIVEP2 HNRNPUL2-BSCL2 FGD3 TRAJ28 MAML2 RB1 RPTOR IKZF1 INPP4B UBAC2 FAM117A IKZF3 RHOH P2RY8 ARHGAP26 ZNF800 STK10 XYLT1 TIAM1 SLC38A1 RAD51B RIN3 BCL2 AC069368.1 AC005726.1 EMC9 AC022126.1 NOL4L PTK2B SORL1 PARP8 NFATC2 LIPA PRKCB AC025171.3 MACF1 PIP4K2A GYS1 CYTIP ARHGAP25 RPS6KA5 CRYBG1 ZNF77 SLAIN1 RASSF3 PTPRC SEMA4D KLF9 ACTB TGFBR2 PRKACB STIM2 YWHAZ CARNMT1 AC098582.1 GM2A GSE1 FOXP1 ZNF516 ARHGEF3 ICOS PRKCA UTRN ARHGAP15 RIPOR2 CAMK1D THEMIS SYS1 BACH2 AC010894.3 NEAT1 ZCCHC14 AC005224.2 PACS1 ZNF217 ZNF827 BCL9L PNPLA8 ITK\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ANKRD44 RIPOR2 LBH HIVEP2 TNRC6B NFKB1 KIF2A NFIC FOXP1 FYN LINS1 RMI2 SEL1L SEPT9 FYB1 TSPOAP1 OGDH BCL11B TSPAN5 G3BP2 UBE2D3 MBNL1 STIM1 PPP2R5C CAMK4 RUNX1 MIR29B2CHG PLCL2 ACTB GLS WDR1 CDC73 IKZF1 VOPP1 TIAM1 TTC33 MCUB ARMH4 FOXN3 LCP2 CROCC SERINC5 LDLRAD4 PVT1 RASSF3 SLC4A10 MGAT5 AC010894.3 CDC14A SERTAD2 STK17B DNM2 STK10 JMJD1C PRKCH SEC24C PKNOX1 EML6 AL451062.3 HDAC4 NCK2 MIR3681HG ST8SIA6 ZBTB25 HECA PLXNC1 ARHGAP25 GPBP1L1 ZMIZ1 GNG2 ARHGEF3 TLE2 UBALD2 AP000311.1 GYPC INO80B RAI14 PIK3CD TMEM60 SLC35A2 ETS1 TCF7 PARD3B PDE4B FAM107B TNFAIP8 WASHC3 AFF1 PATL2 CDK6 CPT1A FAM19A2 AC068896.1 PIP4K2A RAC2 SH3BP5 KPNA3 ZNF395 DOCK9 PXYLP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ANKRD44 PRKCH UBAC2 HIVEP2 MBP FOXP1 TNFAIP8 ARID5B RAD51B CDC42SE2 ATXN1 CSGALNACT1 CIC KLF13 SH3PXD2A RPS6KA2 ZFP36L1 PPP2R5C ATG5 HDAC4 SERINC5 ITK FYN STK17B PLEC ARHGAP26 RIPOR2 SCML4 MNT SEMA4D ECE1 CELF2 NCK2 CBLB SMAP2 RASSF5 SH3BP5 TIAM1 IBA57 NFATC2 PER1 SEPT9 DNM2 MED15 TSPOAP1 MAML2 SLC38A1 TNRC6B BCL11B RUNX1 AP000311.1 CYTIP SIN3A SYNJ2 MGAT4A LBH ARID4B ITGB2 CPOX CCDC88C UPP2 CDC14A PTPRJ LCK STIM1 LINC00598 AC068896.1 FBXL19 ACVR1 AHR VMP1 ARPC5L FAM117A ST6GAL1 SLC25A26 SUSD4 SORL1 DOCK10 AC069368.1 DRAIC ITPKB OXNAD1 GASAL1 AC004596.1 HBS1L FBXW7 ZFP36 TTC33 GPR68 TNIK GON4L NFE2L1 AL390957.1 MX2 ETS1 MIR29B2CHG TSPAN14 CCDC9 FAM160A2 ZNF652\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: P2RY8 HIVEP2 HDAC4 RUNX1 DLEU2 AC016831.7 IKZF1 FAM107B OGDH CCDC12 JARID2 CD247 ARHGAP26 FAM129A PITPNC1 BCL11B ATXN1 SEPT9 MAML2 FYB1 NCOA7 STAT3 CHST11 RAD51B CELF2 MGAT5 LBH PREX1 LINC01358 UST HECW2 LAMA3 WWOX AHR LINC01135 LRRFIP1 UTRN EYA3 AC068896.1 MBP RIPOR2 ARMH4 ARID1B ELMO1 STK24 FYCO1 CIC CCDC88C FNBP1 BCL2 IL7R NEMP1 KLF9 SDR42E2 FAM49B ARID5B KIF2A ANKRD44 UXS1 CPOX IQGAP2 ARHGAP10 KSR1 ZFYVE28 STX3 PATL2 UMAD1 ERN1 FDFT1 PTPRJ FOXP3 TNFAIP8 RPTOR HIVEP3 AP000311.1 GATAD2A AMN1 KLF13 AL512604.2 PTCH1 PALD1 PRKCQ GPR68 MACF1 FIZ1 LINC01588 SLC17A5 PDE4B AC069368.1 CCND3 JAML RMI2 MNT SCML4 GTF2I GDPD5 TMCC1 PRKCH BTBD11 MBD1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 GLS KAT6B ETS1 MAML2 IKZF1 VMP1 TNFAIP8 AC104472.3 TIAM1 KLHL21 LINC00598 MACF1 ACOXL ANKRD44 LNPEP TSHZ2 TGFBR2 C8ORF37-AS1 AFAP1 HOOK1 EFCAB2 TSPAN14 PSMA1 IFT57 ALDH16A1 FBXL18 PIK3R1 GTPBP6 FHIT PSMC6 RHOF AP001107.3 GIMAP8 SRBD1 ZNF846 AHDC1 CDC14A GNG2 TRIM24 C9ORF3 MRPS31 STAT1 FOXN2 SH2B3 IMMP2L IKZF3 DLGAP2 UTRN LINC01588 CSGALNACT1 PTBP1 MIR3681HG MTMR6 SLC44A2 SKI NECAP1 SUPT7L RBM14 CHST11 PSD4 LDLR PYM1 JAM3 RIF1 SLC8A2 XPNPEP1 PIK3R5 AAMP PDS5B TMEM198 JAK1 SRPRB NECTIN1 AL136961.1 AC079385.1 NRAS SYNJ2 MPP1 ATP13A1 BCAR3 MBP ST3GAL5 PRDM10 DNAH2 UBA3 THUMPD3-AS1 AL031056.1 AC004554.2 DENND4A NOSIP KRI1 NSUN5 ZNF627 KBTBD2 AKAP7 MALAT1 CEP89 MED22 AKNA\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FYN PTPRC PDCD6IP GRB10 ZFPM1 PSPH LINC00598 ZNF846 PIK3R1 BICD1 SYNJ2 MGST3 HIST3H2BB DNAJC8 TMTC4 LTA4H LRP3 AP3M2 PSD4 FAM86C1 CAMK2D MAP3K3 AC073610.3 TERC WNT5B AKAP13 ITPKB BCL2 MAP3K1 AGO2 RFX1 AC016907.2 ZWINT CEP68 FCMR TUBA1C TNFRSF1A SLC13A3 LEF1 MTAP TOGARAM2 KLF12 ETS1 CACNA1G NCOA7 DBP STAG1 MTMR4 ZNF467 HOOK2 KLF13 HTT CDCA3 FOXO3 NUAK2 NOL4L STPG1 INPP4B TSPAN14 BAIAP3 RUNX3 AC073283.3 ENC1 KIF2A TMEM189-UBE2V1 FAM214A AC007100.1 TLE3 INO80B CA6 SORL1 RPL23A FOXP1 SLC25A28 C1GALT1 TRAK2 WNT10A ATP6V1H RPS6KA2 DUSP16 HADH HACE1 PITPNC1 TMEM45A ARHGAP25 KLF16 MAOA USP42 RFX3 C19ORF67 NDUFV2 RHEB CCDC58 TESK2 MAL CERS2 ETV6 AC104695.3 AC091959.3 FAM91A1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC016831.7 STAT1 BCL2 AC116366.3 AC010894.3 UBAC2 MATN1 UMAD1 PALM2-AKAP2 RBMS1 AL121748.1 HIVEP2 MGAT4A ANKRD44 TSPOAP1 ANK3 ARHGAP25 STN1 NPAT INPP4B FOXP1 STX10 FAM107B LINC00861 CCDC9 PTPRC IKZF1 RPN1 FAM117A PRKCH RUNX1 AC099063.1 STIM2 GPBP1 STIM1 TRIO HDLBP SIK3 ATXN1 TIAM1 ISM1 AC096920.1 SESN1 ISG20 RAB27A BCL9 PREX1 RHOH SGMS1 MAML2 FNBP1 INPP4A THRAP3 RASA2 YWHAQ ST3GAL1 CCR7 SNTB1 KLF13 NEAT1 VMP1 SERINC5 LINC00598 PIK3C3 CAMKK1 SSBP3 PRCP AL359736.1 JARID2 RAP1A MSI2 RUNX2 HECW2 TMEM189-UBE2V1 DPP4 CASP8 ERN1 SERTAD2 AC048341.1 CHST11 EPS15L1 AKAP13 SFMBT1 AP000311.1 AL160408.2 BACH2 TRMT1L F11R SPTB HNRNPA2B1 PAG1 CAMK1D ACTR1A GNAQ EFCC1 GNG2 ATAD2B MVB12B ANKUB1 RIPOR2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RIPOR2 IKZF1 AC016831.7 FYB1 CSGALNACT1 ST3GAL1 AKAP13 PIK3R1 UXS1 BTBD9 BICRAL PITPNC1 STK19 ITK STK10 CAMK4 ANKRD44 SORL1 PRKCQ TRIM8 CYTIP NEDD4L BCL2L2-PABPN1 ARID5B ABHD15-AS1 AL355512.1 HIVEP3 CDC42SE2 EPS15L1 PDE4B NFATC2 CCDC88C NCK2 AGO2 AL390957.1 INPP5A PGAP1 PPP2R5C ACOXL YWHAQ RUNX1 FOXP1 CEP170 FLNA CDC14A GTDC1 STK4 NCAPH TSPOAP1 HIVEP2 CELF2 CHST11 RPTOR ARHGAP26 TOMM40L TNK2 LEPROTL1 PPM1B HMGN1 CEP85L PIP4K2A GRK5 SPTBN1 DNAJB14 RALGPS1 SNAP47 LINC00598 PSTPIP1 STK39 MICAL2 FYN GNL1 CRTC3 C3ORF58 ZBTB16 ETS1 EEA1 RIN3 ITPR1 DRAIC HDAC4 ATXN7 RBL1 RARRES1 TNFAIP8 CROCC PATL2 CCND3 FKBP5 KLF7 ELOVL5 P2RY8 LIN54 DOCK10 RAD51B C1ORF112 DLEU2 ZNF354B PLAG1 MBP\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FYN AKAP13 RUNX1 BCL11B RPS6KA2 UBAC2 RAD51B ANKRD44 TTC39C ZDHHC14 ZRANB3 XYLT1 SLCO3A1 TLE4 ARHGAP25 TSPOAP1 CASP8 LINC01588 NFATC2 ATG5 AC068896.1 SCML4 RB1 NLRC5 ETS1 ITPR1 GNAI2 PLCL2 C15ORF53 CHST11 RARA ISCA1 AL512625.2 ZEB2 MBP RNF139-AS1 PPCDC LINC00649 LDLRAD4 GSK3B FLI1 MGAT2 AAK1 AC022075.1 AC104596.1 SAMD3 ACOXL CELF2 RBPJ MAP4K4 DOCK10 NFE2L2 UHRF2 CCDC88C MBNL1 FOXP1 PTPRJ RORA CSGALNACT1 LINC01934 ID2-AS1 PCED1B AL359736.1 XPO1 KAT6B RAPGEF1 TGFB1 TRABD2A IRAK2 LINC01126 BCL2 CEP85 PUM2 LPCAT4 ARRDC3 MGAT5 RAP1B ITGAE ZNRF1 ACYP2 NDUFV2 TLDC1 PI4KA ATG3 MAD1L1 CAMK2G LASP1 CYTIP NKIRAS1 ATXN1 RNF4 CPEB4 FAM117A ADARB1 IKZF1 TESK2 AC078883.1 ARNTL STK40 GNG2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 ARHGAP26 PRKCH RUNX1 PIP4K2A AUTS2 MBNL1 AKNA ARHGAP25 TGFBR2 PREX1 PPP2R5C MAPK1 CDC42SE2 ATXN7L1 MYH9 FOXP1 AC016831.7 ANKRD44 ARHGAP10 HIVEP3 GFOD1 TBC1D2B LINC01588 CAMK2D DRAIC GNG2 LPP CEMIP2 ICA1 AMN1 RIPOR2 FAM49B CD96 PRKAR1B ATXN1 KIAA1551 DNMT3A SFMBT2 TIAM2 CELF2 AC093010.2 CDC14A NFATC2 CASP8 ZDHHC14 LEPROTL1 LINC01126 AL035530.2 TRERF1 COA1 DOCK10 EPC1 PTK2B PLEC RAP1A BICRAL FOXN3 SLC15A4 IGF2R ITGAE AC068896.1 INO80B AAK1 RASSF5 PATL2 CEP85 FYN TCF7 TOX BCL6 RERE KAT2B P2RY8 FYCO1 CYTIP NEAT1 RFFL SEC22C MAP3K5 PRCP TTC33 F2R AL136962.1 TTC39B ARID4B SPTBN1 MGAT4A VAV3 ARHGEF1 MAML2 APBA2 EPC2 LRCH1 LINC00649 LIPA STAT4 TPRG1 RUNX3 ARRDC3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 AC068896.1 SEPT9 LINC01588 NFATC2 HIVEP3 KLF13 TSPOAP1 MBNL1 ATXN1 TNFAIP8 UBAC2 PRKCH ARHGAP26 RIPOR2 FYCO1 MBP FYN ZBTB20 PRKCQ CELF2 ETS1 TGFBR3 SMAD7 AKAP13 ARMH4 FOXP1 FYB1 STK10 NLRC5 MICAL2 AL359736.1 TCF7 TGFBR2 LDLRAD4 ERCC1 FAM49B PPP2R5C PCIF1 ARHGAP25 DNMT3A DLEU2 GATAD2A DRAIC IQSEC1 CCDC88C SETD2 AC079313.2 AC027682.4 COA1 ABHD15-AS1 LHPP BCL11B SASH3 CADM1 LINC00598 TMEM189-UBE2V1 SNTB1 PIP4K2A AC016831.7 LRIG1 SEMA4D FAM102B PTK2B MIDN SMG6 BCL2 ZBTB32 P2RY8 KLF10 GASAL1 BICRAL JADE2 RUNX3 ARHGEF3 MCTP2 ZCCHC8 PSTPIP1 NOSIP RAP2A RIN3 AC096920.1 PVT1 POLR1A UXS1 JARID2 LIPE-AS1 AC013270.1 NR4A2 SEC23B PFKFB3 LPP ARID5B ZEB2 MED15 CDH23 RBSN PLCG2 ITPR1 B4GALT1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 UBAC2 PRKCH FAM107B GRAP2 CDC42SE2 BCL11B ATXN1 AC016831.7 HDAC4 ITK CYTIP TTC33 CDC14A AKAP13 AHR TNRC6B AL359736.1 IKZF1 NFE2L2 ETS1 AL390957.1 AC096920.1 P2RY8 PPP2R5C STK17B MED12L GNG2 CD53 LIPA PDE4B ASAP1 RAP1A IL2RA PLCL1 RHOH OXNAD1 MBP MDFIC PATL2 ANKRD44 TIAM1 CYTH1 ITPR1 ST3GAL1 TNFAIP8 KAT2B PRKAG2 RIPOR2 CFLAR MGAT5 PCED1B RASSF3 LEF1 PIP4K2A ARID5B GNAI2 AC024909.2 IL10RA MGST3 RARA CHST11 PTPRC NFATC2 LINC01004 WWOX RHOF SMAP2 SKI CASP8 PLEC STK4 TG AC093010.2 C15ORF53 VMP1 CELF2 GPR68 BHLHE40-AS1 MAP4K4 LINC01588 RAB43 STK39 RB1 CCND3 FOXP1 INPP5A DNM3 PDE4D GLB1 TNFSF10 DSE LPIN2 THUMPD3-AS1 RPS6KA5 TSC22D1 FYN CSGALNACT1 FYB1 AC079171.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATXN1 PRKCH ARMH4 HIVEP2 ZSWIM6 PIP4K2A TNFAIP8 IKZF3 UBAC2 LINC01588 CBLB PHACTR2 CSGALNACT1 MSL2 ANKRD11 AC068896.1 SYNE1 PITPNC1 FSIP1 IKZF1 GRK5 FOXP1 NEK7 THEMIS CCDC88C ETS1 PTBP3 PRKCQ TG RBPJ MXI1 CXCR4 PIK3R1 ITGAE RAP1A RGS3 BCL11B PTK2B EIF4E3 ITPKB NEAT1 SETD2 BCL2 RASSF5 SMAD3 NFATC2 MPP7 ST8SIA1 STK10 MBP CARS2 TC2N WDR1 RABGAP1L MAML2 UPP1 DOCK8 PTPRC GNG2 LINC00598 NCK2 MYH9 ARHGAP15 WWOX AC093010.2 RORA VMP1 LINC01934 LBH AKAP13 PRR5L INPP4B AC007513.1 RORA-AS1 MORC3 CD2 ARID5B CDC42EP3 ELMO1 CCDC9 GFOD1 CDC42SE2 SGK1 CRADD FAM117A MIAT INSIG1 EVL GTDC1 RUNX1 CD82 EHD1 DRAIC CD247 EHD4 PATL2 RHOH ARHGAP26 BARD1 ARSG\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH CYTIP TSPOAP1 BACH2 KLF13 FOXP1 TGFBR2 UMAD1 ETS1 ATG5 FYN ANKRD44 ARHGAP15 PIP4K2A PRKCQ PPP2R5C MBP FAM49B CHST11 MGAT4A ARNTL ANKRD11 LINC02341 ITPR1 HIVEP2 STK10 TNFAIP8 VMP1 RUNX1 CELF2 IKZF1 KCNA2 PCGF5 VAV3 TBC1D1 ATXN1 MBOAT7 KLF6 AC069368.1 LINC01135 TGFBR3 PDE4B ST3GAL1 TMEM131L INPP4A SNTB1 RBPJ PYROXD1 AKNA CBLB UBAC2 RAD51B APBB1IP AC078923.1 PITPNC1 NBN ITGA6 CD2 PREX1 MAP3K5 IL2RA PLXNC1 AC016831.7 STAT1 RB1 AKAP13 RPS6KA2 TSPAN5 HCFC1 SEC31A ITPKB MAP3K14 NCK2 HPCAL1 ADAMTSL4 CCDC69 OSBPL3 BCL11B MCFD2 CDC42SE2 LRRC8C-DT FYB1 SELPLG FAM117A LPP PVT1 TRABD2A AL359710.1 HAUS8 ARID5B FYCO1 ICA1 PPM1B ZNF831 ABHD15-AS1 HDAC4 AF117829.1 IMMT GNG7 TMEM18\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: NEAT1 PIK3R1 PRKCH FYN CYTIP PITPNC1 TGFBR2 TTC39C RUNX3 ZBTB2 AC016831.7 LINC01588 RAB1A BCL11B ICA1 RAPGEF6 IL7R BCL2 CAMK2D ACAA1 OSBPL3 FYCO1 MAN1A1 BACH2 RUNX2 AC008014.1 STAT4 AUTS2 RAB8B TSPOAP1 CAST EPHA4 DOCK10 MAGI3 FOXP1 WDFY2 ANKRD16 FOXN3 ASXL1 ANKRD44 ZCCHC2 ETS1 ARHGAP26 LRMP IKZF2 PDP1 HNRNPUL1 KLF9 LINC00578 PLXND1 XYLT1 PCNP IKZF1 GATAD2B ADHFE1 NCK2 TMC1 MAML2 SCML4 AC022126.1 SUPT3H PCAT1 BMT2 SUN2 CLTA TNFAIP8 AC068896.1 CDK6 ZNRF1 LIX1L-AS1 SRPRA MMP25 EGR1 VIM-AS1 SLC47A1 ATP8A1 SLAMF7 ZNF217 PTPN4 TMEM116 FKBP5 S1PR1 ATF3 RBM33 LINC01258 RAB27A CFLAR CLCN3 SH3KBP1 KCTD16 CD247 ATP6V1E2 ARMH4 AC051619.4 GNAI2 ZMYM2 NFE2L2 PKM PLCD1 NEMP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 FOXP1 PRKCH BCL2 SEPT9 KLF13 CHST11 JARID2 ANKRD44 ATXN1 MBP SEMA4D RPS6KA2 PIP4K2A RUNX3 IL7R ETS1 BICDL1 CELF2 CDC42SE2 XYLT1 RUNX1 NAV2 TRAJ28 ZFP36L1 PTPN4 RAPGEF1 LINC01588 STIM1 CMTM7 MBNL1 SAMD3 CDC14A EPS15L1 PLEC IL21R AP000295.1 FGD3 ARHGAP26 ELOVL5 LDHB AC093010.2 LINC01126 EPHA4 ARHGDIB HDAC4 IKZF1 SORL1 AC025171.3 ARID5B VPS13D IGF1R SGK1 CCND3 MORC3 ARHGAP15 NCK2 FBXW7 DOCK9 BACH2 TRAF1 LRIG1 ALDH6A1 LEF1 ANKMY1 PCNX1 IKZF3 SNTB1 TNFAIP8 TCF7 HLA-DMA USP36 AC034114.2 JMJD1C ARHGEF3 PLCL2 MAP3K3 ZNF831 AL136962.1 GFOD1 C15ORF53 SPTBN1 PPM1B PAG1 MYH9 DEAF1 HEXIM1 CYP46A1 AL163932.1 FYN CAMK2D TBL1XR1 CXCR4 RARA ST6GAL1 TCAIM AL359736.1 TMEM131L AHR GLB1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZFP36L1 RNF111 PPP3CA ZNRF2 SEPT9 HSPD1 LINC01980 ZCCHC2 ACIN1 DOCK10 FAM110A LINC01825 DGLUCY SLC17A7 FYCO1 WDR1 IFT20 ALDH6A1 WDR19 PRMT3 RIC1 ANTXR2 CDH23 NONO NFATC2 OXSR1 SPEF2 ERC1 STT3B INPP4B CDC42SE2 CSGALNACT1 DEPDC1B BBX KPNA2 TLK1 CRLF1 OTUD4 CENPT AC079171.1 CELF2 IKZF3 ATP5MF FAM184A LMAN2L HLCS SEMA4D ARHGEF9 MAST3 SLC30A5 COLGALT1 DVL2 AP002852.1 STX10 ZNF367 AC008897.2 MICAL3 PLEKHG1 USP45 FAM78A CX3CR1 POLR1A SRP9 PTPN1 CCDC25 GRK6 LARP1B CDC26 PORCN HNRNPM SRGN NAA50 CPEB2-DT SYS1 ERBB3 ARHGEF1 AMMECR1 LUZP1 MAP2K3 ACSL1 TMA16 TGFBR1 EVI5L PCAT1 PHF10 HMGN5 EIF2A WBP2 ZNF549 C9ORF3 KRI1 AMIGO3 OTUD6B-AS1 ZCCHC24 LRRC8C RNF122 PAK2 TNIP3 SAR1B STK24\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC068896.1 PRKCH KLF13 AC016831.7 TSPOAP1 ARHGAP26 ATXN1 ITGAE AL359736.1 HIVEP2 RAC2 NFATC2 RIN3 HDAC4 ARHGAP25 FYN TNRC6B CELF2 TRAJ28 SEC22C HSPA1B SYNE1 SEPT9 P2RY8 UBAC2 TLE4 MBNL1 DOCK10 MAPKAPK2 ERCC1 PCNX1 FOXP1 LINC01934 CCDC88C MCF2L2 SMAD7 CDC42SE2 HMGB1 ITK PCF11 RALGDS PITPNC1 ANKMY1 ANKRD44 MAD1L1 LINC00598 DNM3 BICRAL GTDC1 AL357060.1 AC117394.2 CCND3 KLF9 GPR68 ELMSAN1 CHST11 TNFAIP8 BCL2 TOB2 CD96 CBLB MIR3681HG POU2F1 FAM49B ASTL TBX21 COTL1 AC010894.3 MAML2 ASAP1 CDH23 PPP1R16B ZFP36L1 ANKRD11 TIPARP HHAT MBP UST UTRN TRPS1 INPP4B BCL9L APBB1IP SLC4A4 FOXO3 RUNX1 ATG5 GRK6 EPB41L5 HIVEP3 DLGAP1 ETS1 AL390957.1 EVL PIP4K2A SESN1 CCSER2 GATAD2A OSBPL3 RPS6KA5\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RORA-AS1 BACH2 FAM107B ARHGAP26 HDAC4 ARHGEF3 RIPOR2 TBC1D5 SEPT9 PATL2 MBP UBAC2 SEMA4D DOCK9 PRKCH AUTS2 RPS6KA2 LINC01588 RAD51B FYB1 PIP4K2A STAT4 NDUFV2 CAMK2D AC068896.1 LRCH1 LPP TNFAIP8 EVL NFE2L2 CFLAR RORA ANKRD11 GALNT6 PLAC8 ATG5 ANKH ARID1B EFNA5 BCAS3 CSGALNACT1 NCK2 DOCK10 ENSA ELF1 GALT PPP1CA FRYL MALT1 AK2 AC006369.1 KCNQ5 CD96 EPC1 STAG2 CD2 PAN3 RNF44 TGFBR3 JAK1 CDC73 EZR CD226 IKZF1 SMAD3 PTPRJ DOCK8 ITGA6 TGFBR2 RB1 SYNJ2 RBMS1 KLF13 CYTIP AC078923.1 SH2D3C AJM1 CCDC6 KLF7 PDIA4 ZBTB20 CASP9 KIAA2026 AMN1 CGN HMGB1 EXOC1 IFI16 ITPKB LINC01825 METTL23 AC010894.3 NDUFA12 TIAM1 UMAD1 CBLB BCL11B POC1B BICDL1 BCL2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 RIPOR2 CDC42SE2 CAMK2D IGF2R UBAC2 MAML2 BCL9L KLF12 ZFYVE28 SEPT9 TNIP1 UTRN HDAC4 PTPRC RPTOR WWOX KLF13 VMP1 PSTPIP1 MFAP3 RUNX1 ECE1 FAM117A RASSF3 RB1 AKAP13 FAM107B MAN2A1 VGLL4 RALGDS MLLT3 CD96 MARK4 FYN ITPR1 PIP4K2A STAT4 BCL2 AC016831.7 SORL1 RORA-AS1 JMJD1C GRK5 RHOF AL162377.3 CCDC88C STIM1 AC010894.3 ITPKB ELF1 PRKCH TNFAIP8 FYB1 DLGAP1 IKZF3 BACH2 MYH9 HIVEP2 PRKCA AC068896.1 PRKCB GTPBP6 RUNX2 SNTB1 CEMIP2 AKNA CSK PLEKHA5 ENO1 PITPNC1 MAST4 SYTL2 C15ORF53 ENKUR PTEN P2RY8 ARL4C POLR1A LPP EVL EPHA4 GSK3B PIK3C2B ELMO1 GOLGA2 TRERF1 AP000311.1 AGO2 ALOX12-AS1 AC008124.1 CLCN3 AUTS2 ZNF18 TSPOAP1 LEF1 CYTIP IRAK2 GPR68 EXTL3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATXN1 AC068896.1 HIVEP2 RHOH FYN LINC00598 PIP4K2A ETS1 ZSWIM5 ZCWPW1 KLF10 MICAL2 ATG5 STAT4 PTPRC SYNE1 NEDD9 CCDC173 ARID1B CD96 AKAP13 E2F3 TRAJ28 CDH23 IKZF1 RUNX1 MAP3K3 AL138720.1 ANKRD44 UBAC2 MRPS27 CDC42SE2 MDC1 NLRC5 SETBP1 HDAC4 CELF2 TRERF1 ARHGAP25 UTRN CFAP20 USP25 PLCG2 ELMO1 MAML2 MAP4K4 SLC25A26 AL359736.1 RGCC IQSEC1 HIVEP3 NUB1 LYST APTR SEC22C ITGAE NCOA2 ST3GAL1 GMNN WNT10A RNF38 BCLAF1 PRRC2B MAN1C1 APBB1IP SMIM13 RABGAP1L AC022826.2 NOSIP KLHL21 AC008667.1 PCED1B MAN1A1 FYB1 NOL6 ZEB2 FAM49B SLC17A7 CPEB2-DT ASB2 CHST11 STAG2 IL17RC FBXO33 TNFAIP8 CHEK2 NDUFAF6 RAB8B CYTIP SOD2 AUTS2 CXCR4 LBH ADAMTSL4 CMIP VPS13D CCDC9 SMURF2 AL035530.2 ITPKB\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ETS1 PRKCH RUNX1 RUNX3 FOXP1 P2RY8 FYCO1 FYN FYB1 AKAP13 SLC25A26 LPIN2 TMEM143 LDLRAD4 HIVEP3 TRABD2A CD96 CEP85L ATXN1 IKZF3 ARHGAP26 CELF2 TGFBR2 MDM4 PDE4D UBE2D3 PPM1B JARID2 TSPOAP1 ST8SIA4 CD58 STK10 MAN2A1 BICRAL ST3GAL1 PTPRC ADRB2 CGRRF1 UBAC2 JAK1 TMEM163 MCTP2 ARID1B GRK5 PREX1 SLC39A10 HOOK2 SPTBN1 UST PTPN2 NCOA7 AL450998.2 KIF3B KIAA1671 VAV3 PRKAG2 PRKCQ SMG9 ELMO1 AL138930.1 ENC1 LINC01126 HIVEP2 AC008875.1 ARAP2 CEMIP2 FAM185A AL139807.1 LINC01588 PDCD10 SSH2 DIAPH1 CD99 RCL1 POLR1A CD44 ERN1 AC009185.1 DUSP10 ZNF407 ZBTB20 NFATC2 AHR RPL13A TNFAIP3 AC079171.1 POLI ADM PIGV NRG2 C15ORF53 MBP BCL11B ELF4 AC009299.3 RASSF5 CXCR3 ATP6V1E2 SMAP2 RERE\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: NEAT1 RUNX3 RIPOR2 AC068896.1 MYH9 FOXP1 ARHGAP26 UTRN PPP2R5A UMAD1 USP12 TG ATG5 PPP3CA CD8A PRKCH AL162377.3 PCF11 LCP1 RB1 BCL2 SEPT9 TPRG1 CMTM7 ST3GAL1 HECTD2 WNK1 MGAT1 ARID5B TBX21 CLDND1 FLI1 CTIF AUTS2 RHOF ETS1 AC135178.2 SH3KBP1 LINC01588 ARNTL AKAP13 SCML4 AC008750.8 RBPJ ZDHHC6 CASP8 PDE4D CDCA3 TOB2 RNF125 ANKRD11 BCL11B HIST1H4B KAT2B AKNA FSIP1 CBLB DOCK10 ARHGEF3 SETBP1 RORA-AS1 ARPC5L LINC01655 AHNAK GPBP1 ZNF407 AGFG2 FAM117A IL6ST C19ORF67 RHBDD3 PEX6 MYBL1 MAML2 CPOX ST6GAL1 DPH3 PLEKHA1 RNPS1 CCDC102A SNX9 AL445490.1 TRAJ28 NDUFV2 MAST4 SLC25A42 NSMCE4A POMT2 STAG2 TRAF1 AKAP7 ZFP36L1 CCDC82 INPP4A MSI2 DNM2 UBQLN1 SLC27A1 SNRPC RALGAPA2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATXN1 IKZF3 DRAIC FOXP1 KLF13 CCDC88C PNKP RFX3 CDC42SE2 TGFBR3 FYN JARID2 NCOA2 CFLAR TIGIT GRK5 CLEC2D RIN3 IQSEC1 TRERF1 RUNX1 ARHGAP15 CCDC12 PRKCB UBAC2 CMTM7 DNM2 AC006369.1 RAPGEF1 LAPTM5 HIVEP3 ZBTB7B ARHGAP26 MACF1 TPRG1 ST8SIA4 NCOR2 PTPRC PIK3R5 CDK6 CELF2 ATXN7L1 HDAC4 PAPSS1 LCP2 AKNA PIK3R1 PRKCE GATAD2A SUPT3H AL138930.1 PHACTR2 ATXN7 IKZF1 ETS1 B4GALNT3 PVT1 HIST1H1E CSGALNACT1 DTHD1 OGDH FAM107B ITK TMEM161B AL139807.1 NAA50 TG HLA-DMA RIPOR2 IL15RA ZNF846 AL390957.1 DHX9 PITPNC1 ARL4C EFNA5 RTP5 MAN1A1 INPP4B STX16 STK39 ABLIM1 ZYX TTC33 PLEC TRPS1 NBN MNT TRAJ28 MLLT3 PRKCH RHEB AC098613.1 AC027644.4 ZNF217 MRPL33 APOA1-AS SGMS1 PTPN6 ZFP36\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 CDC42SE2 MBP PIP4K2A AC016831.7 FOXP1 FAM117A UBAC2 ARHGAP26 TBC1D5 ETS1 SEPT9 CELF2 ATXN1 PIK3R5 HIVEP2 SPIDR BCL2 MGAT5 CBLB PITPNC1 CCDC88C KLF9 POLR1A NFATC2 VAV3 LIPA ITGAE TNFAIP8 TRERF1 FYCO1 CPOX ABLIM1 GATAD2A NCK2 TGFB1 PTK2B OPRM1 JMJD1C MTDH TTC33 BCL11B AC068896.1 SLC38A1 ICA1 TRAJ28 SPTBN1 ERCC1 MAML2 SMG6 EVL XKR6 LINC01934 PIK3R1 MYH9 CCDC12 PRKCH LINC01004 ARHGAP25 IKZF1 PRKCQ PRKAG2 EMC9 SARAF TSC22D1 FAM228B CAND1 PRKCZ TMEM39A TBC1D2B TSPAN14 ZNRF2 BACH2 WDFY1 ATXN7L1 USP34 SPEF2 DOCK9 TOGARAM2 CRYBG1 KIF22 MIDN PDE4B ST8SIA4 CDYL2 FAM102B LSM4 BCL9 AL356215.1 TPRA1 PPP1R16B AC008764.1 ARL2BP TC2N RIN3 PLEKHA2 NR3C1 CDYL AP003472.1 DRAIC\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 ANKRD44 BCL11B LINC00598 NLRC5 PRKCH TGFBR2 FOXP1 ST3GAL1 CDC42SE2 LINC01126 RUNX1 ARHGAP26 HBP1 DUSP10 LIPA BCL2 RIPOR2 AOAH RORA-AS1 FYCO1 DRAIC IL7R PLEKHA2 CDKN1B ETS1 RAPGEF1 AL136368.1 AKT3 LINC02341 SH2B3 PTPRC USP34 ARAP2 MGAT5 HNRNPA2B1 FAM129A EMC9 LINC01588 ZBTB20 PDE4B EFNA5 ZEB2 PITPNC1 TSPAN14 FAM107B GNG2 AL138752.2 EPC1 AKNA AC010894.3 CIC TNFAIP8 ZC3HAV1 HIVEP3 GRK6 RASSF3 UTRN MBNL1 TBC1D5 LINC00861 CAMK2D EGR2 NFIA MAML2 RAB11FIP4 PTCH1 STK10 VOPP1 SIN3A TBC1D14 MTO1 CEP85L VIM-AS1 TGFBR3 AL031599.1 LEPROTL1 ARHGDIB CFL1 LRRC8C-DT DLGAP1 PPP1CA ARRDC3 CDK6 KLF13 FYN AC016907.2 FAM102B PPP1R16B ZNF254 CHST12 SPON2 PPP6R3 RAD51B UPP1 P2RY8 SEPT9 CFLAR FAM117A NR3C1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 IKZF1 TNFAIP8 ARHGAP26 UBAC2 ZBTB16 PIP4K2A ANKRD44 MED12L HOOK2 ITPR1 LINC01934 PRKCH ST3GAL1 HNRNPUL1 STAT4 PITPNC1 LINC01588 AC020911.2 RAD51B HIVEP3 FYN TGFBR2 GALM ARHGEF3 CDC42SE2 HECW2 AAK1 CIC AC107214.1 SMG6 MAML2 ITGA4 TTC39C FAM117A ARID1A CBLB DUS2 SIN3A NOL4L FAM107B FYCO1 UMAD1 IMMP2L AL359736.1 OARD1 PRKCQ UBE2D3 GATAD2B IFFO2 ZNF831 HDAC4 RAPGEF1 MAN1C1 CD2 FLNA VPS36 TSPOAP1 JAML CASC11 IL7R ATP2B4 AC068896.1 FAM76B ITPKB APBB1IP NEMP1 CELF2 ETS1 HIVEP2 CCDC6 CD28 ABHD15-AS1 MYH9 MICAL2 DAD1 RPS6KA5 TANC1 ATF7IP ATXN1 DNAJC8 RAI1 SNTB1 RAB43 GAB3 PLCL2 IKZF2 JARID2 ARHGDIB RIN3 ADM ASAP1 TMEM87B RALGDS IFNG-AS1 PLEC RUNX3 DLEU2 RHOBTB3 BACH2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH IKZF1 AC016831.7 MGAT5 RBMS1 ATG5 HIVEP2 MBNL1 TMEM131L FYB1 FOXP1 HDAC4 BCL2 BACH2 AC010894.3 PATL2 CBLB ANKRD44 RIN3 UBAC2 SCML4 FAM49B PCGF5 BHLHE40-AS1 AHR CELF2 ATXN1 CARS2 CCDC88C CDC42SE2 KLF13 FYN LEPROTL1 TC2N G3BP2 LINC01934 MYH9 RUNX1 AKAP13 SEC22C RALGDS MTO1 IKZF3 RPS6KA2 TNFAIP8 FBRS PREX1 SMAD3 STK17B DNAH2 CAPZB RHOH ARAP1 PDE4D AL139807.1 SEMA4D MAP3K5 MALINC1 AC068896.1 ITPR1 ITK LNPEP MAML2 RIPOR2 PRKCQ ZBTB25 IMMP2L H3F3B RFX3 MXI1 PTMA ARID1B ARMC2 CYTIP NCOA2 HOOK2 IGF1R ITGA6 MGAT1 MACF1 ADARB1 RORA TBC1D14 CCDC12 AC099063.1 RAPGEF1 PIP4K2A BCL11B RASSF2 SPTBN1 ERN1 CAMK1D SEPT9 GRK5 MBP SMG6 NFATC2 CD247 R3HDM4 MFAP3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SEMA4D TSPOAP1 UBAC2 RB1 RUNX3 P2RY8 FOXP1 CELF2 RUNX1 SEPT9 LINC01588 LINC00598 AC009126.1 ITPKB KLF13 MBOAT7 TTC33 PITPNC1 AC096920.1 PRKCH PTK2B PLEC AC068896.1 TNRC6B IRF2 AC079313.2 ST3GAL1 IKZF1 PRKCQ PDE4B ITPR1 ARSG RAP1A EPHA4 LINC00649 LINC01126 ANKRD44 IL7R CDC14A AC020911.2 LBH TGFBR2 CRYBG1 PPP2R5C SORL1 MAML2 ARHGAP26 PIP4K2A CDK6 RAD51B TNFAIP8 CDKN1B ADCY7 C15ORF53 NFKB1 BCL2 ZNF652 SMG6 ATP10A SUCO BCR NEMP1 MRPS27 CSGALNACT1 TG HDAC4 SOD2 GRK2 DUSP22 SMAD7 DGLUCY G3BP2 SLC39A11 PNPLA8 STK17B RASA3 ZNF367 CD96 TRABD2A NFE2L2 CD44 FYB1 SDR42E2 ST6GAL1 ETS1 C3ORF18 FRYL MDFIC RIPOR2 ATG5 ARHGEF3 HIVEP3 HBP1 GLB1 ATXN1 DOK2 MAN2A1 LTBP3 RAPGEF3 EXOC5\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CELF2 LDLRAD4 SLC25A26 FYN STAT4 FOXN3 RB1 ETS1 HDAC4 CHST11 ATXN1 GNG2 NCOR2 PITPNC1 ZNF217 TNFAIP8 HNRNPL AHR CCDC88C MICAL2 FOXP1 GPR68 UBAC2 SEMA4D ITGAE ANKRD44 SEC22C LITAF CAMK2D ARHGAP25 STAMBPL1 SLC6A6 UPF2 DNM3 PPP2R5A ZNF831 PDE4B ZFP36L1 WDR1 GNPTAB MBNL1 BCL2 HIVEP2 SMAD3 AC016831.7 FAM19A2 HIVEP3 AMN1 SUCO LRRC8C-DT GRK5 SGMS1 LINC01934 ARHGEF3 IKZF2 AMZ2 HIST1H1E SLC16A7 MBP GATAD2A FAM107B SIAE PAG1 RMI2 DUSP16 FIZ1 LIN54 SH3BP5 ATOX1 MTA2 KDM4C GSK3B IL7R LINC00385 TBC1D5 AKAP13 IQGAP2 FSIP1 ANKUB1 ZCCHC2 SPECC1 ZFYVE28 GABARAPL1 HMGB1 CEP85 SH3KBP1 FAM102B ZNF324 STAG1 SMAD7 PATL2 WWOX FAM49B SYNE1 PRKCH GNAI2 ATG5 JARID2 RGS14 MBOAT7\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 CD247 TIAM1 RUNX1 CDC14A ZFP36L1 PDE4B AKAP13 FYB1 MICAL2 PVT1 SLC38A1 LINC01004 VMP1 STIM2 AL390957.1 LDLRAD4 KLF13 PITX3 HIVEP2 CYTIP PCAT1 AC016831.7 ATXN1 FAM107B LCP2 TGFBR3 RUNX2 PRKCH IL16 C6ORF89 CHST11 TGFBR2 SERINC5 DNAH2 KAT2B PSTPIP1 LIPA RCSD1 CIC EXT1 PTPN6 LINC01588 CHI3L2 CSGALNACT1 NEAT1 LPP ATAD2 BACH1 SMG6 RNF44 BACH2 DUSP16 C15ORF53 UBAC2 PPM1B RPTOR SGMS1 RPS6KA5 RPS6KA2 G3BP2 ST3GAL1 TOM1L2 STYX RHOF MXD4 SIN3A AL138720.1 EDEM3 XPO6 ADAMTSL4 SEPT9 FLI1 CDK6 USP3 IMMP2L SYNE2 RBPJ SSSCA1 AL359736.1 RPS29 APP DBP PMM1 JARID2 HDAC7 BORCS5 AC093277.1 ANKRD33B S1PR1 ST8SIA4 ARSG BCL9 PTK2B LINC02384 MAML2 RASSF5 ITPR1 CELF2 P2RY8\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SIN3A ERN1 STAP2 CHD9 FBXO32 ANKLE2 PRTFDC1 UBAC2 NSMF PHF20 GSK3A ANKMY1 EHD1 TRGV10 PER1 ZBTB22 SKI AUTS2 AL162377.3 MDC1 AC105411.1 AC048341.1 HOMER1 ATAD2 MCM7 ICOS CEP135 SKAP1 ACHE CCSER2 HAVCR2 RCC1L WDR75 RGMB MGAT4A CHURC1-FNTB MRPL4 FLOT1 AVEN BCAR3 POLR3B DNM2 NUP153 PTOV1-AS1 TMEM150B AL662890.1 CACNA1F CMTR1 KIAA0895 AP002990.1 SMG6 UBL7 LITAF SARS TPT1 AKAP11 SQLE GLT8D2 ACTN4 TMEM181 NAA38 MYH9 IRF2BPL SIRT1 DPYD MKRN2OS POGK ASAH1 ANKRD23 PPP1R12B IQCG NMT2 CSRNP1 BNIP3L NXPE3 DEGS1 AC006449.6 ATF6 AASDH PCDH12 AP003385.3 HEXIM1 KIFC1 OSTC FCHSD2 RNF2 HIC1 RPS29 AGO1 MBD3 MAPK1 TLE4 MRPL42 SRP9 TSSC4 CLN8 FOXN3 ID2-AS1 INTS2 CBR4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 ARHGAP26 FYB1 SEMA4D RIPOR2 SPTBN1 ATXN7L1 IL7R DOCK10 SEPT9 RPS6KA2 ARID1A ETS1 FAM49B AKAP13 FYN PDE4D PRKCH HIVEP2 CCSER2 RUNX3 ECE1 HNRNPC FAM129A LINC00598 TRAJ28 STIM2 CASP8 PXN EVL ITK NEAT1 PIP4K2A TNFAIP8 FAM107B TSC22D3 UBAC2 OARD1 CD8A BORCS5 ATOX1 ZBTB16 BCL2 TOGARAM2 RAB27A AC009185.1 UBXN11 ELMSAN1 BACH2 FOXN3 TMEM143 RBMS1 SH3KBP1 MPRIP CHI3L2 CMIP GPRIN3 CCND3 PPP1R10 CBLB FNDC3A HDAC4 PLEC MGAT5 RHOH OGDH PRR14L DAB1 RIN3 PREX1 FOXO3 DUSP10 MBNL2 AD000671.2 MAP3K3 MKL1 TRIM8 MAML2 KIF2A DNM2 XYLT1 LINC01934 AL445231.1 IQGAP2 LAPTM5 AL450998.2 COA1 DUSP4 GRK5 HNRNPUL2-BSCL2 PVT1 MCF2L2 AL031985.4 KDM8 ITPKB AC093010.2 ABTB2 STK4 LYSMD3 KIAA1671\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LPP PPP2R5C PTPRC AL390957.1 FYB1 SPIDR ATG5 OXNAD1 PHRF1 RNF216 ALPK2 MAP3K5 GFOD1 FYN AL138752.2 GNG2 IPPK STAG2 HDAC4 ANKRD44 RASSF5 LCP1 AUTS2 MED12L ARHGAP26 PAG1 G3BP2 ARID1B ACTB HIVEP2 RASA3 DRG1 AL136962.1 DNAH2 UTRN PISD HOMEZ ITPR1 SUCO ZCCHC2 SNAP47 VPS37C CD96 AKNA SCML4 SYNE1 ATXN1 UST PTPRE PER1 TTC39C LPIN2 SEPT9 ZBTB20 LINC01588 PRKCH HMGB1 RAPGEF1 RAB26 TTC33 RUNX1 DNM3 AC022182.1 JAML CD28 PITPNC1 FRS3 PRCP SMAD7 CD82 AL356234.2 CDC14A TCAF1 NPC1 FOXN3 CELF2 FBXL13 KLF9 PHACTR2 FKBP5 FBXO11 LEPROT TRADD NLRC5 FGD3 HSPA13 OTULIN AIM2 ZNF782 POLR1A GRAMD1B GUCY2C PCNP SEPT6 CDK6 TSPOAP1 AC007513.1 FRYL CD99 CABIN1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATXN1 UBAC2 SIN3A CHST11 FYN BACH2 FOXP1 LINC00598 MAML2 TIAM1 LMTK2 P2RY8 ZBTB16 DOCK11 UBXN11 TTC39C AC025946.1 PTK2B KLF13 TSPAN14 TSPOAP1 IL10RA EHD1 CELF2 CAMK2D CCND3 SEMA4D AC068896.1 KLF12 GSR CLASP1 RUVBL1 PREX1 ARHGEF3 IL2RA DOCK10 PTMA JMJD1C CAPZB LINC01126 OXSR1 TGOLN2 AC096920.1 ERGIC1 KLHL32 RUNX1 PRKCB LUC7L2 NR3C2 JARID2 PIP4K2A PRKCH CARS2 FYB1 CD96 CDH23 C15ORF53 CCDC9 PTPRJ XYLT1 FAM102A PAQR8 PIK3R1 PPP3CA RB1 AKAP13 TNK2 CNN2 ACOXL KIAA2026 SUCLA2 PITPNC1 SP1 LINC01588 ZBTB25 PMM1 AL160408.2 ZC3H10 ARID3B RASSF5 TBCCD1 ZNF846 TPRG1 ALG12 AKNA AHR HPS5 PTP4A2 BCL11B GSE1 RUFY3 KLRD1 RALGDS AC008629.1 HDAC4 SH3KBP1 PRKCQ NCK1-DT CDC14A HECA\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 ANKRD44 LINC01934 ARHGAP26 RIPOR2 SEPT9 IKZF1 PRKCH CCDC88C KLF13 SGK1 ZYX LINC01588 AC068896.1 UBAC2 PTPRC AKAP13 IKZF3 PIP4K2A LINC00598 ETS1 SDR42E2 POU2F2 AHR PPCDC PATL2 PIK3R5 AGO2 HIVEP2 SEMA4D RAPGEF1 LEF1 ABTB2 LDLRAD4 CDKN1B PTPRJ CMSS1 ZMIZ1-AS1 SMAD3 PVT1 TMEM87B CELF2 MAML2 ITGAE ITK UTRN GPR68 ADAMTSL4 BACH2 ZNRF2 WDR74 PTK2B LINC01004 WDR1 TGFBR2 FAM117A PLEKHF1 FNDC3B PASK HDAC4 DRAIC ARHGAP15 CD96 AC013394.1 EHD1 LMNA MYH9 PRKCQ SLCO3A1 SF1 RASSF5 CD226 NCOA2 RALGPS1 MTMR4 LINC00402 HKR1 STN1 STK10 CDC42SE2 IFITM2 CDK13 IQSEC1 DOCK9 ARMH4 HPCAL1 IFIH1 PIK3CD IQGAP2 LINC01126 DIP2C LINC01137 TBC1D14 PITPNC1 HLCS DUSP10 LYST CDC27 TESK1 EVL\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FYN RUNX3 PIP4K2A RUNX1 FOXP1 ARID5B ATXN1 VAV3 SEPT9 ARHGEF3 ARHGAP26 NFATC2 ETS1 LINC01588 TTC33 PRKCQ AC068896.1 SYNE1 IKZF1 SETBP1 ANKRD44 RAPGEF1 TRERF1 AKAP13 FBRS HIVEP2 PATL2 INPP4A ST8SIA4 GNG2 TMEM131L CHST11 AL158071.1 FSIP1 RIPOR2 BCL9L RAD51B SEMA4D CELF2 CORO1A LINC01934 AHNAK TBC1D2B RIN3 ZBTB20 ATG5 TGFBR3 HIVEP3 PTPRJ SORL1 UTRN BACH2 TLE4 ITPKB WWOX CYTIP BCL2 KLF13 TRAJ28 CDC14A MGAT4A OSBPL3 IQSEC1 CBLB UBAC2 CDC42SE2 FLI1 ARHGAP25 ST3GAL1 NR4A2 AKNA AC078923.1 SPTBN1 FBXO32 RPTOR CSGALNACT1 FYB1 DNMT3A AL357060.1 UMAD1 AL390957.1 PIK3R1 RORA-AS1 TSPAN14 FBXW7 GATAD2A AC008764.1 TMSB4X PFKFB3 RNF44 STK10 SPON2 GRK5 GAS7 ZMIZ1-AS1 CCDC88C RB1 PRDM11 AUTS2 ZNF831\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 PRKCH ETS1 IL7R ARHGAP26 KLF13 NFATC2 CCDC88C FYB1 ARID5B ST3GAL1 SEPT9 NR4A2 ARHGEF3 UXS1 SERTAD2 RUNX1 ITK RASSF3 HIVEP2 CELF2 CDC42SE2 LINC00598 BCL11B PDE4B LRIG1 RAB27A BCL2 RAPGEF1 CMTM7 RPTOR AP1S3 RNF38 UTRN MBNL1 CDH23 LINC02341 ZFP36L1 P2RY8 AL390957.1 FYN CCND3 AL359736.1 SEC22C MON2 PIK3R1 ZFP36 C15ORF53 PFKFB3 ATF7IP IKZF3 LCP2 UMAD1 SEMA4D MAD1L1 PIK3C3 SLC2A1 TLE4 ATXN7L1 DRAIC ARHGAP25 WWOX CPOX RORA-AS1 NEK7 CMIP RNF44 ANKRD11 RASSF5 SESN1 LINC01934 FIZ1 RHOF YIF1A NUP210 CABIN1 AKT3 LINC01004 IKZF1 DLG4 N4BP1 ATG5 FAXDC2 DENND2D ACTR1A RALGDS MCTP2 TRAJ28 CEMIP2 STK17B UBXN11 ABLIM1 LRRC8A AP000311.1 PLEC MIAT AC069368.1 PREX1 NLRC5 MBP\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FYN NCK2 ST3GAL1 PDE4D ARHGAP26 ATXN1 ATXN7L1 AKAP13 PIP4K2A UBAC2 PRRC2B FOXP1 TG ADAMTSL4 BCL9L DLGAP1 ST8SIA4 FAM49B RAB27A SLC15A4 RHOH LCP1 LPP TRERF1 MBP LARP1 LCP2 FLI1 ARHGAP15 GPRIN3 BCL11B AC068896.1 SERTAD2 AC079313.2 PITPNC1 PRKCH TNIP3 AC079594.2 AL357060.1 ITK RUNX1 FAM107B DGKD LINC01126 CCDC88C POC1B TMEM131L AC010894.3 NMRAL1 ARID1B TCF20 IKZF3 C1ORF112 SETD2 ETS1 WWOX ASAP1 ATXN1L MEX3C TPRG1 RGS3 IKZF1 FBRSL1 UPP1 PCNX1 ELMSAN1 NRL MCF2L2 CDC25C LINC01934 ZNF831 IQSEC1 USP3 AC093010.2 GALNT2 LDLRAD4 PNMA1 SH2D2A SIK3 ITPKB SH3BP2 CLASP1 CDYL AMN1 IL16 BNIP2 DOCK8 UST GRK2 CRTC3 FBXO15 TRAF3 RB1 MBOAT7 ABCG1 AC015849.5 SYNE1 RARA SUCO PNPLA8\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TNFAIP8 FYN RUNX1 HIVEP2 PRKCH TRAJ28 PREX1 ARHGAP26 PITPNC1 TTC33 ANKRD44 DNM2 CMTM7 FOXP1 P2RY8 ARHGEF3 ELF1 HIVEP3 RUNX3 MGAT5 NFATC2 CELF2 ST3GAL1 CDC14A PRDM10 RNF125 ZEB2 AL359736.1 PPP2R5C BCL6 AL139807.1 ST8SIA4 E2F3 SEPT9 PIP4K2A STAT4 HIST1H1E TG FAM107B MTA2 INSIG1 B3GNT2 LCP1 AC068896.1 PIK3R5 GPBP1 TRAPPC10 MAN1A1 GTDC1 BARD1 TSPEAR STK10 CDH23 POU2F1 MALT1 ZRANB2 TNRC6B PXN DYRK1A IKZF3 ETS1 SRSF5 MAML2 FAM167B CLDND1 FYB1 STIP1 KLF13 PCGF5 ITPKB PRDM11 PDE4B AC022126.1 IDI1 TBL1XR1 SSSCA1 SMPD1 CTDNEP1 SMAP2 CCDC92 AC005726.1 AKAP13 FAM49B WRNIP1 DRAIC ARID4B RUBCN PRAG1 XYLT1 CX3CR1 STAG2 KIAA0825 PRTFDC1 CUBN RPS6KC1 MBNL1 ZBTB38 TCP1 JADE1 RIPOR2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 CBLB AC068896.1 LINC01588 PRKCH BCL11B GATA3 ZNRF2 AC010894.3 CELF2 ARHGAP10 ANXA4 WDFY2 MAST4 STK24 PTK2B SLC2A1 CDC42SE2 PLXNC1 HIVEP3 AC078923.1 KLF9 CLEC2D AKNA PTPRJ ATXN1 MED12L JMJD1C FOXN3 PREX1 ITPR1 OXNAD1 LCP2 NCOA2 TNIP3 MTSS1 AL390957.1 CD247 TMEM131L AP1S3 PATL2 AGO2 AC016831.7 KBTBD8 TBC1D5 TGFBR3 ARHGAP26 ZMYM2 TNFAIP8 AL591885.1 ANKRD44 MBNL1 FLI1 MRPL33 FYN NAV2 RASSF5 AL691403.1 AC022217.3 UBE2D3 NR4A2 CDH23 PTPN6 NUDCD3 IL2RB PRMT5 UBAC2 AFAP1 FUBP1 SAP130 HIST1H2AH EIF4E ABCB1 CHFR ZNF217 DPP4 PANX1 SPIDR PHF12 BBX PRKCA FAM129A STAG2 HNRNPUL1 BACH2 ETS1 RALGPS1 MSI2 RAP1A KLF13 LIMS1 NEMP1 AC027682.4 AUTS2 HIST2H2AC DUSP10 KLF12 ZDHHC20 RPS6KA5 RPS6KA2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRC PRKCH FOXP1 ANKRD44 RIPOR2 TNFAIP8 TRERF1 BCL11B KLF13 ARHGAP26 TG MAML2 HIVEP2 CYTIP AC016831.7 ARID1B CHST11 CPOX ATP2B4 SPEF2 AKAP13 AC093010.2 SEMA4D HOMEZ UPP1 CDH23 NEMP1 OSBPL3 RUNX3 PIP4K2A UTRN AC022075.1 HMGB1 HNRNPUL1 NCK2 CASP8 FOXO3 RAD51B ETS1 CLDND1 MAP3K5 IL7R ATXN1 ARMH4 GTDC1 C4ORF46 ANTXR2 MVB12B UBE2D3 ZBTB20 FBXO34 ANKRD11 INPP4B RORA SYNE1 PER1 HIVEP3 PPP2R5C AC010894.3 FYB1 VMP1 ANKMY1 UBAC2 LGALS8 CEP85 AC068896.1 RASSF3 RAPGEF1 ZNF831 SLC2A1 YWHAZ MAPK1 PRPF38B RIN3 DRAIC RBMS1 ITGAE STIP1 BACH2 SGMS1 CAST KDM4C ATG5 CDC42SE2 SEPT9 SKI CELF2 PCGF5 TESK2 AL390957.1 LCP2 AC084200.1 UBXN11 CAPN2 AL357060.1 JAK1 MPP7 GYS1 LEF1 ETV2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 MBP ANKRD11 CARS2 ARHGAP26 HDAC4 GATAD2A FOXP1 UBAC2 DNM2 CDC14A LINC01588 ITPKB CLYBL ARID5B PIP4K2A LPP BACH2 RIN3 FYB1 ZFPM1 TRAJ28 RAD51B SLC12A8 BCL2 RUNX2 EPC1 AKAP13 TIAM1 BCL9L ARHGAP10 PLCL2 PTPRC NEAT1 CDKN1B PNKP PRKCH RARG CDC42SE2 SLC2A1 FOXN3 MAML2 STAG2 JARID2 NFIA MSI2 PLCG2 SIN3A SEMA4D GSE1 LINC00861 FGR ZDHHC14 ITPK1 MED12L TCF7 PLEKHA2 ITPR1 LDLRAD4 HDAC7 RPL13A ELF2 PSD4 UTRN ANXA6 SEPT9 C3ORF58 LINC00598 DDHD1 ARHGAP15 NLRC5 TRERF1 KAT6B MCF2L2 DPF3 MDFIC POLR1A AL357060.1 AUTS2 FOXN2 FCMR PHLDA1 PITPNM2 NOL4L PRCP RASSF3 NCALD ATP2B2 NKIRAS1 INPP4B TOX2 FBXL12 NELL2 SKI CHI3L2 MBNL1 RAPGEF1 TGFBR2 NDUFV2 ARSG\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH ARHGAP26 FYN LINC00598 FOXP1 CDC42SE2 HIVEP2 CIC CHST11 AC016831.7 LYST MBNL1 TRAJ28 CCDC88C STK10 RHOH ASB2 ANKRD44 AKAP13 AC093010.2 MAML2 CD96 LINC01588 ATXN1 PRKCQ ITPR1 ATXN7 NCK2 RAPGEF1 RUNX1 STIM2 MTO1 IKZF1 PIP4K2A CMIP TG BCL11B ETS1 HMGB1 LPP STAT4 RNF216 CELF2 OSBPL3 PITPNC1 LCP2 NCOA2 ASAP1 SERTAD2 ITGAE UMAD1 VMP1 GATAD2A LIPA CASP8 ST8SIA1 TNK2 PLCL2 SYNE1 ARID1B AC008105.3 UBAC2 AL390957.1 SMARCA2 RUNX3 ANTXR2 ATG5 NRL ARMH4 MCCC2 AHR TMEM143 ZBTB20 MBP ATXN7L1 CPOX PHF19 UFD1 SEPT9 RERE MAST4 MKLN1 PTPRC CYTIP ARID5B C15ORF53 AC022075.1 MGAT5 INSIG1 WWOX BICDL1 RALGAPA2 MYH9 NKIRAS1 METTL21A METTL8 PIK3R5 P2RY8 AC073342.1 NOL4L\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ITGAE IKZF1 CELF2 PDE4B BORCS5 FOXP1 PRKCH RIPOR2 PITPNC1 BCL9L ARID1B CAPZB GSK3B PCED1B SEPT9 FYN FYCO1 UBAC2 PTK2B AC069368.1 SEMA4D NFKB1 SYNJ2 KLF13 SMG6 TMEM192 AC016831.7 SPAG1 ARHGAP25 JARID2 MGAT5 RBPJ ITPKB CMIP FYB1 CCNL1 TG MDM1 CYTIP SLC35B4 ANKRD11 RORA HIST1H2BC LINC01366 NFATC2IP ATP6V1E2 BCL11B PIP4K2A RUNX1 TMC6 PNKP AL627171.1 STN1 TNFAIP8 WWC3 DSCAML1 SEC31A CUBN SH3KBP1 KAT2B CD247 AHR PDIA4 RALGPS1 TSPOAP1 AL160408.2 ITPR1 RORC AC016907.2 AC010894.3 C10ORF99 MICAL2 PXYLP1 ARHGAP26 GATAD2A SH3BP5 NHSL2 STK10 ARHGAP15 SETD7 SGMS1 FAM214A CDC42SE2 KIAA0513 WHRN NR3C1 L3MBTL3 BRF1 ZBED5 USP36 NR1D1 KCNQ1 ELOVL5 HBS1L CD28 TXK PTPN1 B3GLCT IGF1R RHOBTB3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: IKZF3 TSPOAP1 PDE4D RIPOR2 LINC00649 ZEB2 ATXN1 TGFBR3 SETBP1 CFLAR MYH9 RUNX3 RORA-AS1 BCL11B PCNA EPM2AIP1 ARSG HIVEP3 DUSP10 ATG5 CPVL TRANK1 IFNG-AS1 UTRN ARAP1 CD247 OGG1 PPP3CA BHLHE40-AS1 DOCK3 NOL4L PLXNA4 FBXW7 AC005523.1 SLC11A1 JARID2 NFIA RBM14 AC008438.1 HMGN4 ITPKB ABHD15-AS1 GRAP2 TMEM87B AL035530.2 LINC01126 MBNL1 NSD3 DOCK5 AC068896.1 C1ORF112 TIPARP PIGU CLASP2 LINC01004 MYO1G THADA NPHP4 ZNF558 BFSP1 L3MBTL3 SMG6 ZNF683 ELAC2 PTPN2 NELFE CHD8 CGGBP1 PIP4K2A FSIP1 RUBCN PTGER2 RGS9 PSD4 VAMP1 PLAG1 CMC2 NEAT1 SLC7A1 FAM182B FGD5-AS1 AC139887.2 BCL2 AGPAT1 STAT6 GPCPD1 DENND4B PXN TOR1AIP2 MBOAT7 SIN3A NUB1 HMGCS1 TCP1 UBL3 NFATC2 ERCC1 FAM107B ZNF77 MTURN\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ACOXL CELF2 TSPOAP1 KLF13 FYN TGFBR2 TRAJ28 RUNX3 FOXP1 PAPSS1 PLCB1 SETBP1 AC010894.3 LINC01588 ZFP36L1 EPC1 MAML2 SEPT9 UBAC2 ATG5 AC068896.1 PIP4K2A LINC01934 ZNF143 NPAT ELF2 RASGEF1B TNFAIP8 RALGPS1 STIM1 CBLB ARHGAP26 KIF2A ETS1 LINC00598 SCML4 CCDC88C MTMR4 AC118549.1 BCL9L TBC1D1 ZBTB10 NR4A2 NEK1 SGMS1 PREX1 SNX16 ASH2L RFX3 LINC01137 TG AC020978.2 RASA3 RGS3 RUNX1 PDE4B ATXN1 NABP1 IKZF1 MGAT5 STK10 ELOVL5 HBS1L ST3GAL1 CARS2 HNRNPL RIN3 VCPIP1 YWHAZ KARS SIN3A GSK3B EMILIN1 TECR FGD3 GRK5 AC069368.1 CD47 RBPJ C15ORF53 LBH RARG LCP1 IRAK2 AC051619.4 ZRANB3 CTH BCL11B ARMH4 GATAD2A RASSF1 PAG1 ZNF131 AC005726.1 HIVEP3 CHST11 RBMS1 TPRG1 P2RY8 TBC1D5\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 ZBTB20 GTPBP6 BCL11B RUNX1 GRK5 CBLB NFATC2 DNM2 ITPR1 PTP4A2 DUSP10 SDCBP NT5E SIPA1L1 PRDM11 NCOA2 TSPAN14 BAG3 AL392046.1 IL1RAP AKAP13 UBAC2 AC137810.1 MSN SARNP RORA-AS1 AL121748.1 NUB1 SLC39A11 UBE2D3 TCF7 FAM117A MCMBP LINC02520 RASSF3 IQGAP2 AC021188.1 MAML2 AC068896.1 AC097534.1 VAV3 IQSEC1 MCF2L2 PTPRE PRKCH LHPP HNRNPUL1 ABI1 ARHGEF3 ACADM KCNQ1 SPTY2D1 AC016831.7 LTA MAN1A1 NR3C1 ANTXR2 MAP3K4 AC016907.2 AL162377.3 TGFBR3 PLCB1 SYNE2 KRAS ATXN1 UTRN BBS12 TBC1D2B RASA2 RNF166 ANKRD13A RPS6 PTPN7 RNF125 GALM CCT8 STK17B SLC39A10 UBE2K LINC01588 KIAA1551 LPP GLB1 TRABD2A MAP3K3 AL157373.2 NAP1L1 PTPRC ZNF487 TLDC1 TRIM8 LINC01980 HMGB1 RUNX2 AL110118.2 ST3GAL2 PNKP FOXP1 LRBA\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: STK10 TACC1 TIAM1 LCP2 MRPS30-DT UMAD1 KSR1 LGR6 KIF22 MTMR12 G3BP2 USP7 NUBP1 PTMA GXYLT1 ARSG ST8SIA4 H3F3B CHCHD3 NCOA2 AC011481.2 ESCO1 USF3 ARHGAP26 ITM2C SUB1 RBMS2 CPLANE1 NFATC2 ITPKB NEK7 LY9 ZBP1 KDM3A ICE1 LINC01126 AC009185.1 AL359736.1 WDR1 ANXA6 OSBPL3 SPRYD7 LTN1 TG PTPN2 FBXO31 CACYBP RUNX3 TOMM7 SMAD7 EFNA5 OXNAD1 MAN2A1 KIF13B AC092718.8 GMDS CPOX CRY1 METTL13 AIP LINC01968 CD44 KLHL28 TCTN3 PCAT1 ITPR1 TTC13 CDC42SE2 GUSB EVA1C NOD2 CASP8 CDHR1 AC021752.1 LINC01307 FYB1 FBXO32 ENC1 FAM57B SLC36A1 FLVCR2 USP24 RASGEF1B WBP11 POMT2 CMTM7 SLC25A44 VAV3 N4BP3 SH2D3A OXCT1 HACD4 AC034238.2 PAOX ABLIM2 USP12 UFM1 WEE1 SIL1 KIAA1257\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PIP4K2A FNBP1 FOXP1 ARHGAP26 OXNAD1 PCED1B WWOX PRKCH UTRN AC068896.1 PDE4D PTPRM CD226 ARHGAP25 ARHGEF3 ATXN1 ATG5 AC010894.3 PDE4B RAP1A PCF11 SCML4 SLC2A1 IKZF1 LINC01588 HNRNPUL1 SETBP1 SETD2 GRAP2 RIPOR2 HIVEP2 SMG6 DLGAP1 LIPA HOOK2 CELF2 HNRNPL LINC01980 TSPAN14 TOM1L2 PRKCZ REEP5 ATP2C1 LGALS8 ITGAE STIM2 HIVEP3 NUP153 LINC01934 TSPOAP1 SEMA4D POLR1A HMBOX1 ITPR1 DIABLO TMEM131L UBC CD8A M6PR KDM4C CBLB NEAT1 PROSER1 CNDP2 MYO5A IRF2 AGFG2 ZAP70 MAPK13 AC079313.2 TMEM241 CDC14A AL356234.2 AL390957.1 PIK3AP1 CARS2 NANOS3 ARID5B LINC00649 LINC00271 LINC00861 RNF38 TGFBR3 TTI2 PHF12 MAP3K3 PTK2B ZNF831 DNM2 PITPNC1 TMED5 IL10RA OXSR1 EVL TACC1 MSI2 FAM117A FAM129A BCL11B IFNGR2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 AC016831.7 ANKRD44 TNFAIP8 FAM107B CELF2 LCP2 BACH2 CCDC88C ATXN1 UBAC2 LINC00426 TG PIP4K2A FOXP1 LINC01934 TTC39B ASAP1 RASSF5 PDE4D TRAJ28 AC022182.1 PTPRJ RAD51B RUNX1 PRKCH ZNRF2 RORA FYN TRERF1 ITK MAP3K5 AP000311.1 RAPGEF1 SEPT9 APBB1IP NCALD ATXN7 ARID1B IQSEC1 NFATC2 CD96 PTPRC NCK2 PATL2 MYCBP2 RPN1 KLF13 AKNA PRCP ZC3HAV1 ARHGEF3 PLCL2 TBC1D5 LINC01588 INPP4B ITGA6 HIVEP2 IKZF1 LPIN2 ST3GAL1 HDAC4 TGFBR2 SLC2A1 PHF19 AL031056.1 FAM117A AL390957.1 RBMS1 CDC14A DOCK10 STK10 HDAC6 PRKCQ AL162377.3 AC010894.3 STIP1 TRG-AS1 FYB1 ANO10 DGUOK-AS1 IMMP2L UXS1 BCL11B CASP8 JAML RASA3 AC006449.6 ARHGAP15 LRIG1 CROCC MAML2 NEK7 DUS2 VPS13D RAB27A NFIA ZMIZ1 RB1 CDC42SE2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 ITK DRAIC IKZF3 RUNX1 FYB1 GLB1 PDE4B TTC33 PPP2R5C RAB11A AC068896.1 FYN RIPOR2 NFKB1 PRKCH STAT1 MED15 TNFAIP8 IKZF1 OSBP AL121748.1 TRABD2A TC2N ATG5 BCL9L ARHGAP15 CDKN1B BCL11B AP000311.1 TIAM1 CFLAR AP002990.1 MBP TLDC1 LINC01588 SNTB1 BCL2L1 TRAF3IP3 RFX3 ATXN1 LINC01126 CD8A AFF1 HECW2 ARID4B RAI1 ZBTB21 ETS1 EPS15L1 KLF16 CPOX RPS6KA5 CCDC9 ZBTB20 MYH9 TRAJ28 STK10 RORA CSK LIPA BICRAL AL160408.2 TBC1D5 RUNX3 R3HDM4 ACSM3 PBXIP1 P2RY8 MCF2L2 SLC25A26 MYO18A C1ORF112 DSE SGMS1 CDR2 AL390957.1 LINS1 PRR5L HIVEP3 TLK1 WNK1 MACF1 LIPE-AS1 PRCP TNFSF8 MGAT4A SIK3 ADAM10 ARHGAP25 AC016907.2 PPP1R16B LINC00861 UBE2D3 N4BP1 CHCHD2 ASAP1 G3BP2 ACSL5 AC022075.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 HIVEP2 ATXN1 AKAP13 ETS1 ARHGAP26 ARHGEF3 AC016831.7 CBLB ANKRD44 BCL11B UBAC2 FYN TGFBR2 RALGDS ARID5B KLF6 ZMIZ1 PPP1R10 BCL2 STAT4 ATXN7L1 RIPOR2 HDAC4 LINC01004 C15ORF53 PIP4K2A FAM107B SAMD3 ATG5 PRKCH CCDC88C ELL SYNE1 TIGIT TECR NFATC2 MTSS1 TOX ZEB2 UTRN EPHA4 DNM3 RB1 LPP CFLAR RAD9A ELMO1 MBP AKNA SLC39A10 LINC01588 PRR5L MAPRE2 HAVCR2 STN1 FAM49B BIRC3 EPM2AIP1 CDC14A PATL2 CELF2 BICRAL MIR3681HG GSK3B FYB1 SETSIP MAML2 ATF7IP TSPOAP1 AFF1 NELL2 CPOX TCF7 GPR68 CHST11 MCF2L2 AL359736.1 ATP2B4 FYCO1 MBNL1 CD96 LINC01126 LINC00299 RIN3 CDC42SE2 ANKRD11 C21ORF91-OT1 IL7R POU2F2 RAP1A RHOF SLC2A1 GRK6 TRPS1 ITPKB RUNX1 COTL1 ZCCHC24 COL15A1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: IKZF1 CDC42SE2 HDAC4 PRKCH CCDC88C TNFAIP8 LINC00598 CYTIP RIPOR2 HIVEP2 TSPOAP1 BCAR3 NFATC2 RPTOR GRK5 C15ORF53 RHOH AL359736.1 CSGALNACT1 PIK3R3 BORCS5 HIVEP3 PPP1R12A RASSF5 ST8SIA4 AP001107.3 NCOA7 MEX3C IKZF3 AC096920.1 FOXP1 PRKAG2 AL390957.1 CCDC69 IQGAP2 MTIF3 BCL11B MAST4 SLC38A1 NR4A2 THEMIS CNOT3 AC008438.1 TTC33 MED12L PDE4B KIF21B CAMK2D UBAC2 MDM1 NBPF1 GSTK1 PRKACB MIR3681HG ARHGAP25 HMBS CLEC16A CDC14A ZFP36L1 CGGBP1 MNT AC016831.7 ARID5B SEPT11 PATL2 RAD51B ANKRD44 LDLRAD4 ATXN1 ITPR1 STK40 PNKP TNRC6B LPIN1 CDK6 CLEC2D AP000787.1 ATXN7L1 RBPJ LPP ADAM19 INPP4B PIP4K2A SNRK WWOX DOCK10 RAB1A LUC7L2 LINC01934 ZRANB3 LPIN2 BTBD9 AL356417.3 ATP2B2 ARHGAP26 LINC01588 KLF13 ZNF414 MAP4K5 ARID1B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MAML2 RIPOR2 TBC1D5 RORA KLF12 NCK2 MGAT1 RIN3 ANKRD44 CASP9 KCTD7 LBH CDK13 CD8A PDE9A CDV3 KLF13 RPS6KA2 ITK TRABD2A LINC01934 MSI2 CBLB HIST1H2BO PCM1 SMAD3 DOCK3 PCSK5 VAC14 SP1 TMEM131L NAP1L4 LITAF ANTXR2 UBAC2 DBT CRADD AC079171.1 POC1A PWWP2A ZNRF2 METTL23 ELMO1 DIP2A CCDC174 NKIRAS1 NLRC5 NR1D1 SIRT5 RAP1A HIP1 STK10 PMM1 SASH3 CCDC85C MTSS1 RFX3 RBM14 SLC11A1 LINS1 GPRIN3 INAFM2 OTUD5 ITGB1 LINC00299 DKK3 AL035696.3 AC079313.2 DLEC1 STARD5 PTK2B AC025283.3 AEN AASS B3GNT2 STAT1 COX6B1 AL365259.1 NAPA TMEM71 ATG7 SERF2 TIMMDC1 TRAF1 ARHGAP26 CDC37 WDR86 SPG11 HSPH1 FBXO22 ATP11A ARPC5 TMEM192 IL32 STK40 PTPRJ TSEN2 CLTA BAZ1B RPRD1A\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: R3HCC1 ATXN1 YWHAZ BID UTRN UBAC2 NQO2 RIPOR2 ITK USP6NL USP12 EVL MAML2 PTPRJ AL121748.1 FAM107B NMRK1 SKA2 TMEM230 ZDHHC5 PTK2B ERLIN2 BCL2 NTNG2 AC096920.1 CENPT PIP4K2A CASK ACTN4 TMEM123 RERE PTGDR ZNF808 IKZF1 RFFL AC021752.1 BMPR1A ARNT REEP4 GPR55 CATSPER4 AP3D1 CHI3L2 PCNX4 GSR RLN3 PPP1R18 ZNF891 DDX60 AC007513.1 TSPAN14 RHOH C20ORF27 SEL1L SYNE3 RNF166 CLDN4 PRTFDC1 ASB4 NPC2 PHF8 MGAT1 CSNK2A2 BIVM-ERCC5 HLA-C UBE2J1 TSC22D2 OXNAD1 INTS6L SIK3 RWDD1 FRG1-DT ANXA2 MGMT PAIP2B AL669918.1 WWOX MORN3 CAMTA1 SPATA41 LIMD1 CAST Z84492.1 HLA-DMA FOXP1 CREB3L2 MYLIP WHRN SNHG8 CYTIP TRAPPC10 DUS2 AL157756.1 LSM2 AAK1 OPA3 STAG1 GRAMD4 AL139246.5 NEMP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CYTIP IKZF1 SEPT9 AC010894.3 AC016831.7 LINC01588 CD96 LIPA TIAM1 CELF2 ARID1B RUNX1 PTPRC UBAC2 KANSL1 AC068896.1 PIP4K2A ARHGAP15 RPTOR KLF13 CDH23 CCND3 HIVEP2 BCL3 MAML2 RMI2 BACH2 ATG5 SIN3A TXNRD1 NEAT1 PATL2 FAM69A BCL2L1 TG MIR3681HG SGK1 MOB3A MED12L LEF1 RPS6KB2 AC096920.1 RPN1 CYTH4 AL390957.1 KAT2B BCL11B OGDH ITGA6 PRKCH LBH RAD9A RPS6KA2 AKAP13 UXS1 RHOF LCP1 LINC01934 AKNA FAM107B NEK7 CD55 P2RY8 CAMK1D L3MBTL3 RAB27A AC008764.1 ASCC1 ABHD15-AS1 TMEM123 ASAP1 CDC42SE2 STAG2 PRKCB TMEM150B FYB1 CARS2 CHST11 CBX5 ELMSAN1 RASGRP3 NEMP1 NFATC2 TSPOAP1 MYH9 CD2 BCL9L SOS1 HIVEP3 ARMH4 KLF7 USP36 PPP1R21 GLB1L NCOR2 SSSCA1 FGD3 ACVR1B ADCY7 AC009226.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PDLIM2 COTL1 ARHGAP25 BASP1 MAML2 AC079209.1 FAM107B INTS9 HECW2 PLEKHO1 PVT1 AC022217.3 HIVEP3 ETS1 IQSEC1 LMNA SFXN5 CEP170 ETV6 ZMIZ1 NAA50 PLCL1 MARK4 C5ORF66 SARAF TRPV2 TSPAN14 EXTL3 MAD1L1 LAPTM4A DNAJB12 VMP1 ANTXR2 SEMA4D ZNF143 OTUD7B CMKLR1 RHOBTB1 ZBED5-AS1 PTGER2 ATXN1 RASSF5 FRMD4A SCFD2 VIM-AS1 NFE2L2 CYTH4 ARAF SLC13A3 ERCC1 XYLT1 RNF149 SF3B5 KMT2C RUBCNL AC118757.1 RBM19 AC079313.2 NPC1 GK MKNK1 SVIL UNC13D AL356275.1 TG DPH3 NETO2 LINC00237 LIMD1 SYNJ2 AL450992.1 TM2D2 DIAPH1 IFNGR1 FAM117A STK10 CRTC3-AS1 JARID2 CFAP61 HIST1H4K FLI1 AK9 CCNT2-AS1 FAM49A TRPS1 DCUN1D4 AL390957.1 GPCPD1 FBXL19 ATOX1 LY9 HDAC4 HACD2 FCGR2A CASP9 EIF4G1 SMIM2-AS1 ARID5B FOXP1 PDP2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHST11 RAD51B XYLT1 IL1B ZNF365 FOXO3 MBP VMP1 PTPRE CELF2 CORO1C ARHGAP26 TG PTPRC CPQ PLEKHA7 SEPT9 ST3GAL1 LYN PATL2 SMAD3 HAVCR2 PIK3R5 RREB1 MEF2C RPS9 AC024909.1 AC090559.1 KLF13 IFNGR2 PLAU RASA3 B4GALT1 SGK3 MIR29B2CHG LINC01127 THRAP3 GRK6 AL133523.1 KCTD12 ETV6 TMEM273 PRKCH JMJD1C FAM107B LIPA AC024909.2 CAST PIM1 AL138720.1 FAR2 AC007991.3 SSBP3 AC078923.1 TIMP2 EPHB2 CYP1B1-AS1 AKAP13 THG1L KDM7A HNRNPUL2-BSCL2 ZEB2 LRRC8C HIVEP3 AC009226.1 PNKP ERGIC1 ARHGAP25 CYTIP UBE2Q1 NDUFA10 L3MBTL3 ZMIZ1 NFKBIA IL4I1 CD180 UBE2D3 CUBN MAPKAP1 HBP1 AL138752.2 CFLAR UBAC2 RPS6KA1 CARS2 PGS1 CLEC7A STAM2 RUBCNL AC076966.1 RARA KLF9 KLHL6 TM9SF4 AC079313.2 DCAF1 H3F3B GLS ARFGAP2 MORC2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ANKRD44 FOXP1 LINC01588 FOXN3 PVT1 PRKCH BCL11B TSPAN14 AKAP13 CDH23 LINC00598 CCDC88C RIPOR2 TGFBR2 STIM1 TIAM1 UBAC2 VAV3 C15ORF53 AC016831.7 DOCK10 BACH2 ST3GAL1 LCP1 AC009126.1 CELF2 NCK2 SIN3A ATXN1 ELF1 SEPT9 LIPA PCGF5 LEF1 AOAH RUNX1 HIVEP2 FAM117A KLF13 CD82 EPC1 ETS1 TRAJ28 MYH9 ARHGDIB BCR RASSF3 SNTB1 ELMO1 STK17B HECW2 IKZF1 IQSEC1 SEMA4D RIN3 LINC00861 CD247 ATG5 PRKCA DRAIC RORA IMMP2L FYN LDLRAD4 MXI1 CYTIP STAT1 TTC33 TXNRD1 GPR68 CASP9 LBH PITPNC1 TRABD2A CARS2 AC022126.1 ZCCHC2 ARID5B ACOXL FAM69A RPTOR PHF19 TBC1D5 SUPT3H AC093423.3 SOD2 TG ITGA6 SH3BP5 PLEC AC020743.2 ARHGAP15 LPP MIR3681HG PPP2R5C TCF7 LINC01934 G3BP2 LPXN PIP4K2A\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC016831.7 FRY ATXN1 AC024909.1 PTPRE JARID2 TRPS1 ETV6 MBP RUNX1 ELF1 AL359736.1 ARHGAP26 DSE ACTB SIN3A NEAT1 CCDC122 STK10 RIN3 CFLAR ST3GAL1 MAP3K14 ELMO1 PFKFB4 JOSD1 LMNA PPP1R18 EIPR1 LRRC8C RUBCNL AL390957.1 AC079313.2 ARHGAP22 PIK3R5 PTPRJ LIPA ASCC1 SLC25A37 RASGEF1B SLC35F2 AC011511.2 CPQ AC022826.2 KLF9 DAGLB NCOR2 LCP1 RAB27A CCDC146 CELF2 GNAI2 CYTH4 AC007192.2 PTK2B AL138720.1 LINC02384 ST8SIA4 FKBP7 AC117834.1 TBXAS1 MAML2 AL139383.1 FLOT1 PRKCH CYTIP RAD51B EMILIN2 MSN LINC01003 GAS7 ARID5B NCAPH2 LINC01136 KIF22 MYO18A CDH23 RAPGEF1 EDEM2 MAP2K3 BCLAF1 IL1B SVIL ANKRD44 PDE4B TEX41 SPECC1 CYSTM1 DLG4 ETF1 LDLRAD4 SPIDR ZFAT UBE2L5 TSPAN14 SEC24D CCR2 PPP2R5C ARID3A KAT6A\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TBC1D2B SERINC5 AK6 AC016831.7 ALCAM ARHGAP26 MEF2C NBDY ARHGAP10 GNAI2 RHOBTB3 DUSP23 CIITA RUNX1 FBXW7 VOPP1 MGAM SGK1 ATP8B4 ZNF254 AC079313.2 LOXL2 AF241726.2 CDCP1 RBM23 GATAD2B MYCBP2 AL023755.1 POU2F1 TAGLN2 KDM7A ALOX5AP CD74 FOXP1 PIR CFAP161 SLC15A3 SEC31A BTD LINC02321 WASF2 IRF2 IL1RAP DENND3 SH2B2 CDK14 ZNF710 JAK2 PPP2R5C RELB ISG20 DPYSL2 KANTR ACVR1 TMEM18 BCLAF1 LINC01358 H3F3B LINC02068 TNFAIP2 NBPF11 CARD19 AL078590.2 CRTC3-AS1 FNDC3B SLC10A7 TTC7A ARF4 IL6R MKKS HDAC2 ELMSAN1 DOCK10 ESYT2 SUMF1 CPQ GPA33 LMO7DN HIPK2 WDR89 NUBP1 DSE AC019197.1 AKAP13 STXBP5-AS1 DNAJC15 FSIP1 TMEM154 AC078850.1 CRBN LHFPL2 LPP TRPS1 LAP3 DOCK5 SLC27A5 AC008105.3 CCNA2 ACSL5 CCNT2-AS1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 SMAD3 ZMIZ1 AC016831.7 NEAT1 ANKRD33B PRKAG2 STAG2 RPTOR MIR29B2CHG LINC01588 SEPT9 LYN TSPAN14 GALNT2 MAGT1 FOXN3 ABTB2 IRAK2 MAML2 BCOR TNFAIP8 DOCK4 FOXP1 FOXP3 NFKB1 MGLL MSN TMEM131L ZC3H12D CDK6 FOXK1 ST8SIA4 SNX29 PHLDA2 SH3KBP1 P2RY8 ELMO1 AC079313.2 ATG5 VMP1 ATOX1 RAD51B PHF19 AC007991.3 ETV6 CFLAR FLNA ANKRD55 DNAI2 MAML3 DST POLK UBAC2 LITAF KDM2B SPATA24 BRWD3 STARD4 FMNL2 GPR107 RASSF4 AC009126.1 PPCDC NUDCD2 IQGAP2 IKZF1 ZFP36 MAP3K11 TNFRSF1A RBPJ KIF2A CUEDC2 FNBP1 ITPKB ZMYM2 STK17B MSI2 AC022217.3 FAM208B MALAT1 ARID5B CDV3 CHST11 SYNJ2 USP3 PTK2B RPS6KA2 FRMD4A PATL2 CLNK CYTH1 HIPK2 MICAL2 NHSL2 PARP8 FMN1 AP3M2 IQCD AC107871.2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 LPP RUNX1 PRKAG2 ZMIZ1 RAPGEF1 IL1B ITPR1 AKAP13 DNM2 FLI1 ZNF365 CMIP MCF2L2 AC024909.1 MBP ASAP1 SLC11A1 PDE4B AL138720.1 SEPT9 AC016831.7 TTC7A ETV6 RIN3 DOCK10 CYTH1 GPR68 RB1 LIPC GSN LYN LRRFIP1 MICAL2 TNFAIP8 ERCC1 PTK2B N4BP1 TBC1D2B PTPRE CACNA1C CELF2 POLR1A RFX3 KLF13 INPP5A RASA3 SLC2A1 SYNJ2 XYLT1 GSE1 GFOD1 DRAIC RBPJ AC069368.1 CHD9 PRKCH PIK3R1 B4GALT1 AC022182.1 PTPRJ MAD1L1 SMAD3 ZMYND8 AC079313.2 CASS4 NSMCE2 DNAJB5 EXTL3 ARNTL AC024909.2 FOXN3 DLGAP1 RAB11FIP1 UBASH3B AC009226.1 LINC01135 DOCK2 SLC1A2 AC005726.1 PGD LIPA CD82 RBMS1 TRABD2A CHST11 PIK3R5 SLC29A3 ATG5 ALOX5AP SLC9A9 FOXP1 DST DOCK8 FAM49B AC090559.1 SFMBT2 PGS1 TSPAN14 USP3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 ARHGAP26 KLF13 AC016831.7 UBAC2 AHR IKZF1 PIP4K2A CHST11 CDC42SE2 ANKRD44 PRKCH TSPOAP1 FOXO3 SEMA4D ATXN1 DOCK10 RPTOR FOXP1 MAML2 STK10 SEC22C CCND3 RAPGEF1 PATL2 AL390957.1 SERINC5 SYTL3 TXNRD1 IL7R SERTAD2 CELF2 CYTIP JMJD1C MBP BCL2 XYLT1 BACH2 RIPOR2 ZMIZ1 GPR68 FYN AC069368.1 GRK5 ARHGAP15 ATXN7L1 GPRIN3 PLXNC1 ELF1 MACF1 ETV6 INPP4A ABHD15-AS1 ATG5 CPOX TECR CCDC69 KLF6 PREX1 GPBP1 AKNA PRKAG2 AC068896.1 NFATC2 HDAC4 CROCC CDC14A RASSF3 ZNF365 RIN3 MAST4 BHLHE40-AS1 FAM107B MGAT5 AL359736.1 TYW1B ASAP1 RAD51B WWOX AC079313.2 MYH9 FAM129A FMN1 TTC33 ARID5B CACNA1C INPP4B FYB1 SVIL NOL4L SUSD6 IQGAP2 DUSP10 MTF2 ALOX5AP ITPR1 RUNX3 CDH23 PDE4B LINC00598\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LPP AL138720.1 ATG5 FMNL2 COTL1 RUNX1 ASAP1 ZMIZ1 ATXN1 CDH23 ARHGAP18 LIPA LINC01588 ETV6 AL109615.3 AC024909.1 ELL GPR68 GSE1 OGG1 KLF13 UXS1 PSD3 AL157871.4 ELMO1 CDCP1 PAG1 CHST11 PTK2B MAP3K3 CACNA1C Z84488.2 MAMSTR AC069368.1 HECW2 NUMA1 CMKLR1 RPS6KA5 LYN TMCC3 MYO9B MEX3C MAP3K5 STX11 INPP5D FOXN3 ZMIZ1-AS1 AC008764.1 DENND1A CPQ EVL SH2D3C CPVL DGLUCY ANKRD11 NFE2L2 PITPNC1 CMIP TG DENND3 IRF2 ST3GAL2 PJA2 PPM1H IL4I1 ARHGAP26 CCDC88C TNIP1 SH3RF3 TPRG1-AS1 DOCK1 TSPOAP1 SERINC5 FAM174B LINC02452 FARS2 SOD2 GCA HDAC4 TSPAN14 G2E3 RBMS1 ANAPC15 AC068896.1 EPC2 LINC01934 AC010894.3 ZHX1-C8ORF76 TTC39C FAM234B IL1B TLE3 STAT1 FYB1 RARA ABCG1 ENC1 ST8SIA4 RAB8A CYTIP\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 MBP AC016831.7 FYN HIVEP3 RUNX1 CCDC88C ATXN1 ARHGAP25 RIN3 CPOX CELF2 MBNL1 LINC01588 TNIP1 PRKAG2 EVL FAM107B IKZF1 BCL2 HDAC4 SEPT9 RASA3 ZMIZ1 FOXP1 AC068896.1 CYTIP PRKCQ SEMA4D TSPOAP1 POLR1A PREX1 LFNG ACTN4 BCL9L TGFBR3 PATL2 CDC42SE2 UBAC2 ATG5 RAPGEF1 ASAP1 RUNX3 ANKMY1 TMEM143 CCDC69 MTO1 STAT1 AL390066.1 ADCY7 CHST11 CUBN LINC01934 STK10 FOXN3 AL450998.2 STK17B STIM1 IL32 RIPOR2 ATXN7L1 FBRS TSPAN14 CYTH1 PRKCH CASP8 SKI BHLHE40-AS1 IQCG HOOK2 NFATC2 ARHGAP15 LPP RAD51B SIK3 ELMO1 ETS1 GSK3B ITPR1 TRABD2A TNFAIP8 MAP3K3 LCP2 OSBPL3 GAS7 NRL DNMT3A RB1 CFLAR SEC22C NEAT1 ACOXL CD82 TSPAN2 LDLRAD4 P2RY8 DNM2 LINC01358 ANKRD44 MIR3681HG\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 MAP3K3 LPP FKBP5 FOXP1 SERTAD2 SESN1 L3HYPDH MBOAT7 CCND3 ANKRD44 UTRN AC015819.1 ST6GAL1 AC069368.1 C3ORF58 GAS7 CRTC3-AS1 CASP8 FBRS RUNX1 PMEL AC016831.7 ARF4 RAPGEF1 TGFB1 ASAP1 ABHD2 UBALD2 MTO1 CAB39L NCOR2 PBXIP1 GATAD2A ARHGAP26 METTL9 MLLT3 GSN NLRC5 LRCH1 GCA EGR2 AL359736.1 DOCK10 CHCHD4 ARID5B PIK3R5 TSPOAP1 WDR89 RTN4 TIAM1 NPAT STAT6 TLR1 QKI SYNJ2 DAGLA PJA2 MAP4K4 CD8A PRTFDC1 SETBP1 ETF1 RIPOR2 CDKN1A ELL AC079313.2 COTL1 CACUL1 LYRM4 BACH2 HNRNPC RASA2 SSBP3 ADCK2 AKAP13 STIP1 CNOT3 AC008438.1 LPCAT1 SKI AC087239.1 C2ORF42 TMEM245 ARHGEF3 DNAJB12 BCL6 EXOC3 GLS RUNX3 DUS2 SEC31A TRG-AS1 ZMIZ1 PAG1 LDLRAD4 N4BP1 UXS1 ARHGAP10 PCGF2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZFHX3 CHST11 LCP1 ZNF217 BCL2 VOPP1 XYLT1 AMZ1 ANKRD11 GAS7 SLX4IP AMN1 IL16 SLC38A2 DOCK10 OSBPL3 AL390957.1 EEPD1 AGTPBP1 MCF2L2 MAML3 EHD1 RAC1 GNAQ PRKAG2 DAGLB VRK2 ADM CDC42SE2 TBXAS1 RASSF5 HERPUD1 TNIP1 FBXL19 ST6GAL1 STIM1 AC069368.1 ZFP36 SLC35C2 KLF9 AC068896.1 MXD1 TFEB PVT1 SDR42E2 LPP MKKS IL1RAP MYO1E ADAP2 CLMN AL138752.2 LAMTOR4 SNX29 IL2RA MGAT5 GTF3C1 AHR CTSB ARHGAP26 ELMSAN1 TLE3 FYN IER5 RRAS CCDC88C KHNYN IRS2 AC099552.3 ARGLU1 LINC01400 NEAT1 PLEKHA1 RGS12 HDAC4 SAMSN1 CARS2 UFSP1 ETV6 C2ORF76 TMEM53 N4BP1 CBX5 CD83 KDM2A MOB3A EMILIN2 CFLAR HDAC7 FAM214B BACH1 CCNYL1 THG1L CCT8 LYN TMIGD3 IL4I1 LINC01135 NUAK2 AL109615.3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATP8A1 PMEL THUMPD3-AS1 LDLRAD4 ASAP1 NABP1 ARHGAP26 STK10 AC024909.1 SGK1 MCF2L2 TG PHLDA1 TBC1D5 CHST11 HECW2 FZD1 AC079313.2 ETV6 SH3BP5 PECAM1 TNIP1 DCP2 ZC3H12D XPOT AC010542.3 ZEB2 ACVR1B IQCD SLC6A6 NRROS OXSR1 SNAI3-AS1 EEF1G AHNAK KIAA0930 SCARF1 LYSMD2 AC024909.2 RPS12 AC007923.4 C5ORF66 MSL2 FCHSD2 ZFC3H1 YWHAZ ATR RHOBTB3 SMG9 XRCC3 PNPLA8 CNOT1 GRN AC084200.1 ATXN1 RHOF PVT1 CYTH4 MIR3681HG BTBD11 CFAP61 DOCK8 LCP2 AC016831.7 SDR42E2 POU2F2 MDM1 PITPNC1 HJURP KLF9 RIPOR1 AL355512.1 SCAF11 AC063949.2 HAVCR2 TMEM216 CRTC3 UBA3 NCAPH2 GNB1 MREG DLGAP1 GASAL1 NMNAT2 MEF2D PLRG1 PRKAR2B AMZ1 NUDCD2 ARHGAP10 MTPN HIVEP1 FAM192A PRRC2A FOXP1 CDK14 TFE3 SLCO3A1 ZNF394 CRADD\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AL359710.1 DOCK10 RB1 PPP2R5A SEMA4D MAP3K5 TSPOAP1 MICAL2 CMIP MBP OGDH FOXP1 KLF10 RARA LYST RAPGEF1 IKZF1 CEMIP2 LPP ELK3 EXOC6 STAT6 CRACR2A SGTA DOCK2 CHST11 AKAP13 GPR68 RAD51B CEP350 ATG5 LINC01431 AL591885.1 GSTO1 EVL RABEP2 RFX3 ARL4C ELF2 SYNJ2 PVT1 GNG2 ATAD2 EXOC4 PER1 MB21D2 FNIP2 NOTCH1 PTPRE HNRNPH1 AKNA PHF10 TRERF1 INPP4A RAD9A SDR42E2 CBX7 KSR1 USP36 ATXN1 SOD2 SETD3 SGMS1 POLR3A DOCK4 AL138720.1 LAPTM5 DEGS1 ZNRF2 LONRF1 PRRC2B JSRP1 AC009226.1 PRKCB ADCK5 ACTB TNFSF8 AC020743.2 RMND1 U2AF2 HLA-DMA SELPLG AC011481.2 IRF2 PTTG1IP UBA1 PTK2B AC104109.3 ANTXR2 RRM2B DLGAP2 ZNF140 PRKAR1B ALAD KLF9 MX2 INPP5D NIN PTPRC HIBCH\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 ARHGAP26 FOXP1 PRKCH RIN3 ETS1 BCL11B CCDC88C ANKRD44 SEPT9 UBAC2 IKZF1 CARS2 LINC01588 MAML2 TNFAIP8 CELF2 SEMA4D ARID5B AL357060.1 CDH23 CDC42SE2 SNTB1 FYN KLF13 IQSEC1 AP000311.1 PTP4A2 ATF7IP ARID1B AKNA PITPNC1 KLF12 PIP4K2A DOCK10 AKAP13 TIAM1 SEC22C RPS6KA2 ARSG ZBTB20 AC010894.3 DNAH2 ST6GAL1 LRRFIP1 LIPA C15ORF53 FAM107B RAPGEF1 AC068896.1 CCSER2 CCND3 NFATC2 ABLIM1 GASAL1 EPC2 TNIK TGFBR2 PTPRC RPTOR TRPS1 CABIN1 RB1 ERCC1 DRAIC FOXN3 BCL2 MAD1L1 PLXNC1 ST8SIA4 FYB1 RBMS1 APBA2 NCK2 BACH2 BCAR3 ITK PDE4B PPM1B ST8SIA1 AOAH HECA PRKCA GNGT2 LINC00598 MAP2K3 SUN1 FAM118A KLHL32 CD247 HIVEP2 PPP3CA PRPF40A RPS6KA5 AP000787.1 PATL2 KAT6B PTPRN2 LEF1 DUS2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LRRFIP1 ERCC1 CD99 H2AFY TBC1D1 CHST11 SEMA4D C16ORF45 MRC2 TTC7A MRPL39 RPS29 LINC01484 C3ORF58 TTC33 GYS1 RALGDS ZDHHC7 ABCA1 ANXA5 ASB2 NDUFC1 CPPED1 FKBP15 ARFGEF2 SERTAD2 PPTC7 SRSF5 EIF3A RPL13A PRKCE VPS37C KSR1 PREX1 AL157911.1 BTBD2 PDE2A PACSIN2 KLF6 ATXN1 ARID5B KANK1 PRELID1 PISD KLF9 GSE1 SH2B3 SYK LINC01588 PITPNC1 PDGFC MGLL ETV6 TMEM245 ANKRD44 AMN1 SEMA4B UST FAM19A2 GCNT2 ANKRD40 SETD3 MKNK1 LINC01623 CD300LB TRIM25 FLOT1 UBE2K CLRN3 EAPP AL163932.1 PNKP AL121758.1 PPM1K SDF2L1 ERBB3 INTS13 ICE1 INPP4A MIR29B2CHG CLMN PTP4A2 DOCK8 GGA2 ABR LINC01704 CXCL8 TNNI2 NEIL2 AC005775.1 NAA30 GSR ZBTB45 STAT5B SHMT1 LRP8 LINC01135 POGK CNIH1 MUL1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 ETV6 LPP INPP4A ASAP1 ZMIZ1 MED12L RAPGEF1 MYOF MEF2A MBNL1 CDH23 ANKRD44 ITPR2 TNFAIP8 GLS DOCK10 PLEK CYTIP CPQ SBNO1 AKAP13 ZNF365 XPOT PTPRE CIITA NGLY1 PLEC NR3C1 PIP4K2A MCF2L2 MYO1E P2RX7 AC012368.1 ZC3H10 JMJD1C AL138720.1 MTHFD2L PATL2 ATXN7 GPR68 SLC13A3 REV1 USP3 NCOR2 APOL2 ZNF25 TMEM131L ALDH1A2 IQSEC1 BCL9L LINC01127 CSRNP1 IQGAP2 ZHX1-C8ORF76 CFLAR PTPRJ SH3BP2 ANKRD22 VMP1 CARD19 TPRG1-AS1 STIM1 FNDC3B DPYSL2 THADA PACSIN2 AC090527.2 NAMPT STK10 HSPD1 SLC39A10 CD300LB LINC01135 AC016907.2 ATF6 LINC01588 AC008592.4 FER ELMO1 KCTD6 AC078923.1 RIPOR1 STK24 RPL36 ZNF487 STAT1 MIR155HG TTC7A SNX8 AC116366.3 CORO1C AL158835.1 SERPINE1 ILDR1 ZNF131 TRIB1 NEMP1 TIPIN FYB1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC009226.1 AC006369.1 ARF4 LINC02068 AC011747.2 CHST11 STK10 EBAG9 NRCAM THAP1 ARHGEF3 CORO1C CDKN3 WARS CRACR2A MMADHC ETV6 ADAMTSL4 RAD9A COTL1 FAM49A AC079313.2 LINC00299 TFG ACTR2 SIN3A SGK1 PTPRE FLOT1 GXYLT1 FNDC3B PARP12 TRABD2A AL513283.1 ATP6V1B2 CAPN10 DYRK4 AL139246.3 PLEK PLEC ATP6V1E2 OTUD6B-AS1 MAP3K20 SEC24C STT3A-AS1 AC008629.1 PSMD1 SPIDR TDP2 CDKN1B LMF2 ATP1B1 CDKN1A CNOT3 LARP1B AL157871.4 MOB3B GRK3 DYNC2H1 AC004922.1 ABI1 ZBTB20 ZNF708 TMEM67 LINC01023 ANKMY1 JAML SSBP2 TRAPPC3 ZHX3 PRRC2C MPP7 TTC32 UGGT1 SYMPK PPP2R5C RPS9 CREB3L2 IL16 AL158152.2 AL450998.2 AP000797.3 LINC01800 EPM2AIP1 ARL2-SNX15 ITPR1 AC090559.1 PPARG GAB1 FAM178B ZADH2 TMTC2 STXBP5-AS1 TLCD2 RFWD3 CR786580.1 HLA-E SCAMP3 ATP6V1D EGR1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 AKAP13 SEPT9 PTPRJ RAD51B MBOAT7 CCND3 RARA PFKFB3 MBP ANKRD44 MAML3 FOXP1 HIVEP3 ZMIZ1 C19ORF54 EVL ADAMTSL4 CHST11 IL16 SUSD6 FLI1 TCF7 TG FOXN3 AC024909.2 ASAP1 ERCC1 ATXN7L1 GAS7 MAML2 LYN ARHGAP10 STIM1 MYEOV SIK3 ELMO1 RRBP1 MAP3K5 IFNGR2 MYH9 ZMIZ1-AS1 LPP CD58 LINC01135 RPTOR RIN3 IQSEC1 LINC01353 CMIP PPM1K ETV6 STK40 RBPJ LINC00598 STN1 PREX1 AC068896.1 LPXN CRADD MTO1 AC016831.7 JMJD1C CIITA ARMH4 TRIO RBM15-AS1 LINC01358 RPS6KA5 PRKCH PTGER2 RAPGEF1 SNX29 SMG7 RHOF IQGAP2 NFE2L2 SGMS1 PCCA LTBP4 SLC35F2 LCP2 DIAPH1 NSMCE2 IGFLR1 FGGY AC024909.1 ETS2 HIVEP2 GATAD2A C1ORF112 METTL9 ELL AC079313.2 WDR1 CASS4 AP000311.1 FAM117A LHFPL2 PTK2B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: NEAT1 STK10 AC016831.7 HDAC4 RUNX1 ETV6 KLF13 ZNF365 LPP RAPGEF1 CHST11 SETBP1 HIVEP3 DNAH2 TNFAIP8 DOCK10 STK24 ZFP36 AKAP13 AC079313.2 ITPKB RASGEF1B KLF6 LITAF PLEC PRKAG2 RXRA AL138720.1 ATXN1 HOOK2 ARHGAP26 BCL6 UBAC2 N4BP1 PATL2 IQSEC1 STAT1 B4GALT1 PDE4B NEDD9 SEPT9 RIPOR2 AL359710.1 PLXNC1 MALAT1 ASAP1 CELF2 RHOBTB3 ACTB ARHGAP31 PARVB FAM107B RFTN1 CPQ IQGAP2 LDLRAD4 ENSA ST8SIA4 CDV3 PKM ARID5B EPC2 LCP1 PLEK IRF5 ANKRD11 PNKP AL138752.2 PIK3AP1 LINC02356 CTIF CD83 SFMBT2 TXN KLF9 GLS UBE2D3 NR4A2 RAC2 SGK1 RASA3 AC008105.3 ABR ANKRD44 FOXN3 TNS3 CCNT2-AS1 AC069368.1 ZC3HAV1 FAM234B ATG5 ELL MCF2L2 PIK3R5 RPS6KA1 AC098613.1 MBP BCL2 SLC1A2 DSE\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 MBP CDH23 RIN3 PTPRE DRAIC CTIF TRGV10 LYN TIAM1 WNK1 ANXA2 SMG7 LPP MBNL1 KMO AL136961.1 VRK2 ANXA11 MYO1E RFTN1 LIMD1 AKAP13 IQCD LIPC KANSL1L STK24 LINC02205 TRIP11 FILNC1 NEAT1 FOXN3 BHLHE40-AS1 RALGDS AC008440.1 ZMIZ1 INTS6 AC012560.1 NFIA MIR29B2CHG PLEK HBP1 PLXDC2 ZFC3H1 LSM14B SRGAP3 AL158152.2 LPXN TMEM154 ELMSAN1 DDX60L PLEKHB2 GPR68 IL6R AL138752.2 TNFAIP8 EXOC3L1 TGFBR2 NFKBIA AL137005.1 QKI ZNF365 NLRP3 RABGAP1 MAML3 RGL1 AL390036.1 ST3GAL2 TNS3 MYOF FPR3 KDM2B MOB3B FARS2 TCF12 ALDH1A2 RALBP1 ATXN7L1 CCNB2 GSK3B TPK1 C19ORF54 UBE2E1 SEH1L TPCN2 STXBP5-AS1 NCEH1 TGM2 AL034549.1 ESR1 ARHGAP25 ADPRH CYSTM1 NEMP1 UNC45A LINC01787 ZNF687 SELPLG NAV1 SVIL\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATXN1 CHST11 VMP1 AC063949.2 IGF1R ETV6 AKAP13 WDR1 CELF2 ITPKB PLCL1 RUNX1 DEPDC4 MGAT1 PRKAG2 IWS1 RIPOR2 DOCK10 REV3L DST SLC15A4 AKNA SERBP1 AC099518.3 ATP8B4 MGAT5 ZNF365 AC007388.1 TMEM60 CAMK1G DENND1A EDEM3 CYTIP AC010894.3 C4ORF46 NAV2 RFTN1 LIPA APLP2 RIN3 ARHGAP25 MIR29B2CHG FLT3 PELI1 DOCK5 FYN LINC00662 GSK3B DENND1B SAMD4A CD226 GNG7 PGD NLN AHR UBAC2 CREB3L2 FAR2 MAML2 FNDC3B ARGLU1 NR3C1 FNBP1 CDK19 KANK1 DOCK2 XPO6 AUH TIAM1 STAT6 C15ORF48 AC104078.2 AC009226.1 LRRFIP1 AL139807.1 RNGTT LNPEP MCCC2 IQUB PIK3CB SGMS1 GDE1 CUL3 BCL3 AC022509.2 AL390957.1 DCBLD2 RAD51B CMC1 RALGAPA2 PDCD10 AP4B1 WDFY4 SLC29A3 MAFF MTRF1L METTL9 KATNB1 ZC3H6 TMEM41B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AL138720.1 ARHGAP25 ARHGAP26 XYLT1 MBP ETV6 AC069368.1 RAPGEF1 VMP1 DOCK10 PIK3R5 ELF1 PACSIN2 STK24 RUNX1 TTC7A LYN ERCC1 CUEDC1 AC024909.1 RBPJ ASAP1 TRAF1 AHNAK CDH23 ALOX5AP ZYX FOXO3 UBAC2 AC017083.3 ARAP1 AHR CHST11 PVT1 UBXN11 AC024909.2 MOB3B MAML3 AC079313.2 CFLAR AKAP13 MGAT5 TG GPR68 MGAM HMGB1 ANKRD44 ZMYND8 PATL2 LPCAT1 ZBTB7B DNM2 UBASH3B PLEK NFE2L2 TSPOAP1 RAD9A POU2F2 ECE1 MOB3A EEPD1 PRKCB MAP3K5 AC090559.1 AC016831.7 RASSF3 PGS1 AC007923.4 MKNK1 FASTK CPQ GRK6 CD44 PLAUR STXBP5-AS1 SEPT9 KLF13 KLC1 PPP3CA ZNF365 TSPAN14 ATG7 CTNNBIP1 HIP1 PHF19 ANKRD11 MAML2 TNIP1 XXYLT1 GNA15 PRKCH AP3D1 MBOAT7 ITGB1 ZFHX3 GNAI2 ZMIZ1 FARS2 SLC6A6 DSE\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 AKAP13 UBAC2 FOXP1 LPP LINC01588 RAD51B ATXN1 IL7R AC016831.7 CYTIP RERE BCL11B ARMH4 TGFBR2 BCL2 AC068896.1 FOXN3 FAM107B IKZF1 PRKCH ELMSAN1 CCDC88C ARHGAP26 ARHGAP25 CHST11 PDE4B RIPOR2 MBNL1 CELF2 MYH9 FYN TSPOAP1 FNDC3B AL138720.1 DLGAP1 HDAC4 LIPA RAPGEF1 PPP2R5C AC010894.3 HIVEP3 RPTOR MAML3 GNG2 CDK6 LINC01004 ETV6 MAML2 RASSF5 SGMS1 NEAT1 TNFAIP8 RHOH TSPAN14 PRKCA PPP3CA RABGAP1L AMPD3 SEPT9 PATL2 CD58 LPXN PRKCE ABTB2 TLE4 JARID2 ARHGDIB PRKCQ RPS6KA2 LINC01934 TTC33 CD247 KLF13 AL450998.2 ARID5B MIR29B2CHG ATXN7L1 PIP4K2A STK10 ITPKB RFX3 SKI UBE2D3 PTPRE PTMA LDLRAD4 KLF6 CREB3L2 TBC1D14 MAPRE2 VMP1 PTPRC ELMO1 ACOXL MAP3K3 ANKRD44 AHNAK CSK LINC01126\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PPM1B RPTOR AL160272.2 SETBP1 LPP TMCC3 PIGN HIVEP3 CHST11 IQGAP2 LRIG1 ATXN1 UBE2O AUTS2 DDX60L P4HA2 TM2D2 ZWINT AC079313.2 CHD1 FAM156A TAB2 NVL TMC1 STK10 TOR1AIP2 SIAE BCAR3 NCAM1 MOB3B AL138720.1 TGFBR1 BCL2 ATP6V1E2 MICAL2 CTIF UBAC2 CD44 SEPT9 PRKCA AP002884.3 MAP3K5 AL049629.1 TLE4 CD55 STIP1 IFNGR1 RBPJ ATG5 TBC1D2 SDR42E2 SPART MPRIP SMAD2 PLA2G6 EBAG9 UST TCP11L1 LAMB3 PCCA MCCC2 TIAM1 ARHGAP26 CTNNBL1 MALINC1 INSIG1 C1GALT1 FAM219A MYO5C AP003469.2 TTC33 GNS SERGEF EEA1 AFF1 SHTN1 AC004943.2 HNRNPK JADE2 UHRF1BP1L B9D1 PLAU IL6R INIP AC016831.7 TAOK3 AK2 ELK1 CROCC RFTN1 ARF4 DNAJC1 CHURC1-FNTB CDC14A CAMKK1 IGF1 AC083843.2 HPS5 FBXL13 ITGAX\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 PDE4B AC079313.2 FOXN3 CELF2 RUNX1 SOD2 MBNL1 AHR RAD51B ATG5 AC016831.7 STAT1 TLE4 SUSD6 ETV6 ARHGAP31 LMTK2 AKAP13 CFLAR RB1 SERINC5 RDX SEMA4D LCP1 ARAP1 RIN3 SLC43A2 USP6NL CDC42SE2 PATL2 WNK1 CHST11 LINC01135 HDAC4 TNFAIP8 SMAD3 CORO1C RBM47 HIVEP3 ARID5B EXTL3 FOXK1 DLEU2 LINC01588 ACTB ZFP36L1 PTK2B DOCK4 STXBP5-AS1 CDK13 ST8SIA4 NXPE3 OSBPL3 PLEKHG3 ZNF395 CDK19 CDK6 FLVCR2 RASA3 UPP1 MOB3B RNF216 CYTIP ECE1 AC069368.1 FNDC3B TMSB4X TTC7A VIM-AS1 PAG1 SGTB OPRM1 IQSEC1 ELL ST6GAL1 RHBDD2 ADAMTSL4 MBP OGDH CASS4 ARID1B PPP1R18 ARMH4 GPR68 ZBTB7A STK10 ZNF365 HDAC9 WWOX PTGER2 AC009226.1 CTSZ LIPA SLC12A8 SNX9 MTAP FAM129B IL15 FRY\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AL162377.3 TGFBR2 SCML4 CD44 ELK3 PRKCQ RB1 MGAT5 TGIF1 FYCO1 PIK3IP1 GDI2 EZR PLXNA4 LDHA RXRA RYBP SGMS1 TAF10 SLC11A1 MALT1 CYP2R1 CRTC2 TRIM5 SYNE1 AC073612.1 PLCG1-AS1 TIAM2 AC090559.1 PLCB1 DAGLB LAP3 CPSF6 ZFYVE28 RHEB IRAK2 CASP8 NDUFAF3 IDH3G CCDC167 RAB13 DGKD CAND1 NAP1L4 STT3B LDHC AC078802.1 ORC1 USP6NL TRERF1 MYO1D AL360181.3 TMEM41B EEPD1 DYNLT1 GALT HMGB1 BHLHE40-AS1 AC008438.1 RAB26 BICRAL GATAD2B WDFY1 CASZ1 CYFIP2 RPRD1B STX7 LIMK2 XPO1 USP34 SPECC1L-ADORA2A RFTN1 TIPARP SYTL3 AC004943.2 FOXO1 RCOR3 DLK2 TNFAIP8L2 GRAMD2B MAPRE2 CASP9 AC243829.1 AC104971.3 USP37 ARRDC3-AS1 EDEM1 IQSEC1 TRIM66 AC004241.1 ZNF518A ZNF292 NR3C2 LMNB1-DT AC008667.1 NAIF1 PPM1G ARHGAP26 MSL1 ENC1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATXN1 STK17B AKAP13 AC016831.7 TNFAIP8 TBL1XR1 PBX4 ANKRD44 TG MBNL1 CELF2 CD247 AC069368.1 AHNAK FYN ATG5 TTC33 CCDC88C MBOAT7 BCL11B IQCD CDC42SE2 DNAH2 RPS6KA2 FOXO3 TRAJ28 BCL2 KDM2A ERN1 MATN1 AL359736.1 FNDC3B TTC39C COQ8B ASTL CAMTA1 INAVA PCMTD1 IKZF1 CCND3 MGAT5 SSSCA1 EIF4B HECW2 PIK3R1 ATOX1 RORA-AS1 RALGDS CHST11 SACS PPP3CA GLS DLEU2 AL357060.1 AC007881.2 ETS1 MXI1 AC068896.1 LINC01004 HBP1 AL355916.3 MYH9 HDAC4 EVL AC022217.3 CASP8 TGFBR3 CASC11 ZCCHC2 PREX1 GSK3B KIF18A RIN3 VMP1 MAST4 ASAP1 HK1 PTPN6 CSGALNACT1 CYTH1 LINC01588 RAB37 LRRFIP1 ELL C17ORF67 KSR1 RAB11FIP1 AC009126.1 NPAT RPTOR ITK NCAPH2 PDE4B XPO1 MIR155HG LCP2 PTGES3 PLEKHG3 SKI ZFYVE28\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 SUSD6 LPP TBC1D14 ACTB ANKRD44 FOXN3 CDH23 AL355916.3 PATL2 IFNGR2 LINC01588 RASGEF1B RAD51B RHOBTB3 LYN UBAC2 HIVEP3 JARID2 DUSP22 LINC02384 HECW2 DLEU2 STX11 MAML2 AC016831.7 ARSG STAT1 LINC02539 ARMH4 AL390957.1 MORC3 AC079313.2 AL138720.1 GFOD1 WARS BEST1 FAM110A ETS2 ARHGAP26 LDLRAD4 MCOLN2 AC138123.1 CYTH1 MNT RPS6KA2 XPOT ARHGAP15 CHST15 PIWIL4 WBP1L MAP3K5 CMIP AL357060.1 CRYBG1 PKIB LIMD1 GAB2 GAS7 IMMP2L ADAM10 SIK3 CTSZ H3F3B MYOF PRCP USP4 SH3TC1 TTC7A VCPIP1 STK10 SZRD1 DMXL2 ASAP1 FARS2 ELMO1 TMEM143 ADK AC069368.1 PDE1C LINC01344 VRK2 TEX41 TBC1D5 ACVR2A CHST11 IL4I1 AP003086.2 ETV6 RAPGEF1 AFF3 ZNF516 EPB41L3 PNKP CAB39 ATG5 PFKFB3 LINC01136 HIST1H2BC SF1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 ARHGAP26 AC016831.7 RAPGEF1 ST3GAL1 CHST11 STK10 STAT1 LINC01588 HDAC4 ZMIZ1 ITPR1 GPR68 SH3BP5 ASAP1 AC079313.2 RALGDS PRKCH ARHGAP25 ATXN1 ATG5 LDLRAD4 RPS6KA2 RPS6KA5 JARID2 PTPRE MBP CDH23 PTMA PLXNC1 NCAPH2 AL138720.1 AKAP13 ABR SEPT9 WWOX RASSF5 NR4A2 IL16 FOXP1 ANKRD11 MGAT5 TRABD2A ANKRD44 CYTIP BCL11B MCF2L2 MED12L RGCC CBLB TSPAN14 ARAP1 FYN RB1 ZNF365 MXI1 INPP4A TG MAP3K3 CHD9 CCDC88C MEF2C CRADD LRRFIP1 PLEC INPP5A SLC6A6 RIN3 RAD51B AC068896.1 ELMO1 MBNL1 PTPRJ PREX1 NFE2L2 AL359736.1 IGF1R BCL11A SMAD3 RHOA CFLAR PATL2 FAM107B GRK6 PIP4K2A CARS2 SLC29A3 MYH9 DUSP10 KCNN3 MGLL PRKAG2 MAP3K12 SVIL PRR5L AC024909.1 UMAD1 RHOBTB3 MAD1L1 FOXN3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC016831.7 PLA2G6 CRIP1 LPP TBC1D5 PHACTR2 ANKRD33B ACTB LINC01588 AC068896.1 AC009226.1 MTPN CDK6 AC008105.3 FOXP1 NUB1 MCF2L2 FOXN3 RAD51B ASB2 DCAKD ETV6 ACVR1C AC007513.1 ATXN7L1 TNIP1 RAC1 TMEM192 RCSD1 IL7R AHR MB21D2 UBASH3A PHF19 ASAP1 NLRC5 SEMA4D STAM2 CCR7 TRAF1 STAG2 HIPK2 DNM2 HDAC9 TIAM1 RIN3 PMAIP1 KDM7A PDCL3 ZC3H12D PTK2B FNDC3B VAV2 TBXAS1 SLC1A2 CERS6 RUBCN GPR132 AC091114.1 IDE ESYT2 CRY2 TCP10L2 ARHGAP25 MSMO1 MGRN1 AP002990.1 UMODL1 ITGAE ABCB9 FGFR1OP TCF4 SAMSN1 HAVCR2 AL031056.1 TCF12 CRTC3-AS1 FASTK LINC02427 MAMLD1 STIM2 MREG ASB8 ELOVL6 PTPN23 SDR42E2 ATG5 ARAP2 LTN1 GPRC5C MTO1 ZNF426 XPNPEP1 SIK3 ALCAM AC009313.1 NCOR2 SLC19A2 RBSN P4HA2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC024909.1 TTC7A CHST11 ITPR2 TXNRD1 PATL2 NCOR2 AHR RUNX1 MAML3 AC069368.1 MBP MAP3K14 ARHGAP26 HK2 ZNF365 NRL FOXN3 SEMA4D CKAP4 ABHD15-AS1 DUSP22 CUX1 PLXNC1 CASS4 DDN-AS1 LMNA FGD3 ABCG1 CDH23 MED12L LPP PTPRJ CUBN AP3D1 TLE4 SLC6A6 ANKH PLXDC2 LPCAT1 AC024909.2 RARA PRAG1 HDAC7 IQSEC1 AC007834.1 NKIRAS1 RWDD2B LYN DHTKD1 NXPE3 MAPKAP1 SUMF1 AL138752.2 RNASEH2B-AS1 AL158152.2 DIAPH1 KLF13 PALM2-AKAP2 WDFY1 CLCN7 RAD51B AL691403.1 SMAD3 KCNAB1 TFEB AKNA MIDN NDUFAF6 CLTA SPRED2 ARSG ANTXR2 IFNGR2 LDLRAD4 ZNF367 ORMDL1 AC138123.1 ZNF710 AKAP13 UBALD2 FAM214B LINC00893 LINC00499 ARHGAP24 ATXN1 SYK CUEDC1 GNB2 TYSND1 TRAPPC8 SEPT6 ATAD2 RREB1 RASSF3 CELF2 IL6R NCK2 SLC9A9 KAT2B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 AKAP13 TNIP1 TNFAIP8 STK10 CD74 RAD51B ANKRD44 ARHGEF3 CMIP RUNX1 PVT1 AC016831.7 MAP3K14 AKNA MIR29B2CHG DLEU2 ITPR1 HDAC4 ETV6 CSK PATL2 SP4 ZNF365 SNTB1 RNF166 ATOX1 PTPRJ CDC42SE2 PRKCH MBOAT7 PRKAG2 DOCK10 CD247 NLRC5 ITPRIP RFX3 ARSG LIPA PREX1 ARID5B BCL2L1 STAT1 RERE NFIC ZMIZ1 FYN SLC13A3 FAM117B LINC00649 FLI1 MGAT5 ST6GAL1 ANKRD11 GATAD2A HAVCR2 RNASE4 CD164 RAPGEF6 SEMA4D NFKB2 PDE4B RIPOR2 NCOA7 UBAC2 MCF2L2 INPP4B AHNAK MAML3 NCK2 LINC02205 ITPKB PSTPIP1 SERINC5 UTRN ITK AC097534.2 PCAT1 SMG7 AC068896.1 RMI2 FAM78A PTPRE ATXN7 CMTM7 ANXA6 CYSTM1 TGFBR2 AAK1 LINC01588 ELMO1 FOXN3 STIM1 LRRFIP1 AC008764.1 LITAF FKBP5 STK32C OGDH MARK2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: STK10 ARHGEF3 PRKCH STAT1 ZFP36L1 LINC01934 IKZF1 ST3GAL1 CDC42SE2 FOXP1 RAD51B TGFBR2 HDAC4 BCL2 AKAP13 ANKRD44 AKNA UBAC2 NFE2L2 AC068896.1 LINC01588 FAM107B AC010894.3 CHST11 CDC14A RUNX1 CELF2 TNFAIP8 UMAD1 LINC00598 GATAD2A IMMP2L SH2B1 LIPA TSPOAP1 PTK2B CASC11 POU2F2 MBP ETV6 NR3C1 LRRC23 CD247 BACH2 SSBP3 ARHGAP25 PLXNC1 PVT1 PRKCB SERTAD2 WBP11 AP000311.1 HIPK2 GRK5 PRKACB NCOR2 ZNF365 LEF1 HECW2 ST8SIA4 AL163932.1 PCNX1 DOCK10 SEPT9 ASAP1 BCL11B CCNY UTRN PTPRE AC009126.1 INPP4A AL390957.1 PDE4D RAP2A TMCO4 SRPK2 DEGS1 KIAA1551 OSBP GPR174 ARHGAP5 PRKCA AL357060.1 TMED7-TICAM2 MKL1 SLC45A4 XYLT1 AC025682.1 SLC2A1 INPP5A JAK1 PPP1R16B TENT4B ZBTB20 ANAPC5 SRP14-AS1 MAGEF1 AGA ZNF846 LRIG1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ETV6 MBP AC068896.1 ATXN1 AKAP13 ARHGAP26 FOXP1 AC010894.3 RUNX1 SEPT9 TSPAN14 IKZF1 ANKRD44 ATG5 FYN FAM49B TNFAIP8 UBAC2 ZNF365 RAPGEF1 CHST11 MAP3K5 HOOK2 AC016831.7 TSPOAP1 HDAC4 PRKAG2 RPS6KA2 AC069368.1 ST8SIA4 RBPJ ATP6V1D STK24 DOCK10 HECW2 STK17B ARHGAP25 LINC01588 KLF9 CASK FYCO1 ELMO1 STAT1 ITPR1 MAML2 AC079313.2 CDH23 ST3GAL1 LCP1 ASAP1 ITPK1 IQGAP2 MBNL1 HIVEP3 LPIN2 TLDC1 AHR HIVEP2 ARID1B AC022126.1 AC016907.2 NFATC2 DLGAP1 ETS1 ST3GAL5 AGO2 TNRC6B MAST4 IL16 RIPOR2 MACF1 ARID5B BACH2 PRKCH TGFBR2 ABLIM1 YWHAZ MPP7 LPP CIITA MIR3681HG PDE4B FOXN3 STIM1 SIN3A MAP3K3 CNDP2 EVL CYTH4 PLEKHH3 LPXN ARMH4 RAD51B ANKRD11 PIP4K2A LMNA TNIK ADAMTSL4 GATAD2A NCOA2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: DLGAP1 IL7R AC016831.7 FOXP1 ELMO1 AUTS2 RAD51B ASAP1 MBP AKAP13 ACTB BCL2 PLCL1 PRKCH MAML2 CELF2 KLF13 ANKRD44 FYN TSPOAP1 GPR55 OSBPL3 CDK6 SPRED2 AL355512.1 LPIN2 AC068896.1 COTL1 CD226 FAM129A PTK2B HIVEP2 RELL1 FNDC3B RPTOR SERTAD2 BIRC3 XYLT1 STAT1 CDC42SE2 CIITA SLCO3A1 MTSS1 AHR LIPA DNMT3A ATXN1 BACH2 AMZ1 MBNL1 ATP2B4 KLF6 STK10 CMIP ARL4C MGAT5 ALPK2 SEH1L MBTD1 VOPP1 PPP1R16B COA1 IL2RA PLXNC1 ATOX1 VMP1 PTPRC CAMTA1 CCR7 PRPF40A JADE1 BCL11A IKZF1 LDLRAD4 GRK5 AL357060.1 FYB1 DOCK8 TTC33 JARID2 MAD1L1 HECW2 CCNT2-AS1 ARHGAP26 NCOA7 BCL9L UMAD1 SAMSN1 TRABD2A MGLL TAF10 CPOX SH3KBP1 SLC38A1 PLEC SORL1 RUNX1 SND1 POLR1A SLCO5A1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 ATXN1 IKZF1 AC016831.7 HIVEP3 RAD51B TG PVT1 ARID5B ETV6 DLGAP1 ARHGAP26 HOOK2 PCAT1 PDE4B TSPOAP1 UBAC2 AHR SEPT9 CELF2 ARHGEF3 LINC01588 VOPP1 BCL2 ANKRD33B BCAR3 CSGALNACT1 BACH2 LDLRAD4 RIPOR2 OSBPL3 CFLAR CBLB KLF13 ZBTB20 LYN AC012368.1 PAX5 ATG5 ZFPM1 PATL2 XYLT1 FOXN3 PTPRJ CCDC88C NCK2 NFATC2 HIVEP2 UMAD1 BHLHE40-AS1 EBF1 IQSEC1 ITPKB RUNX1 CDC42SE2 TFEB ITPR2 JARID2 DUSP10 MAML2 HDAC4 TNFAIP8 SMAD3 ACTR3 PKM TBC1D5 UST TGFBR2 TCF4 AKAP13 HDAC9 RAP1A FAM107B SAMSN1 DOCK10 XXYLT1 LINC01934 BLK ARHGAP24 TNRC6B EPS15L1 OGDH VMP1 ANKRD44 LPIN2 MIR3681HG P2RY8 CAMK2D NCOR2 RHOH RUNX3 RIN3 UBALD2 KAT6B RAPGEF1 ARID1B SEMA4D AL035530.2 EXOC2 PRKCH\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SEMA4D FYN AC016831.7 CHST11 ARHGAP26 RUNX1 LCP1 RPS6KA2 DRAIC SEPT9 LINC01588 TRPS1 CCDC88C SETD2 LINC00861 SYNE1 ASAP1 ATP13A3 APBB1IP MAML2 RIPOR2 USP25 CIC PIP4K2A C1ORF112 G3BP2 HIVEP2 PRKCH CELF2 ARMH4 UBP1 ARID5B TIPIN MED12L KIF21A PITPNC1 AC069368.1 PRAG1 NCOA2 LINC00578 KIAA0513 KCNAB2 ANK3 SLC25A40 PLCD1 ATP6V1E2 MPP7 PIK3R5 AP000787.1 KLHL21 METTL8 HSPH1 RNF44 NCL CRTAM MARK4 CARD19 SEPT6 FKBP15 RGS9 FNBP1 ERN1 HDAC4 SF1 OXNAD1 AF241726.2 HACL1 RORA-AS1 AP000311.1 CST7 ZMIZ1 SLC11A1 TEX14 MYH9 SMAD3 GLIS3 INPP4B CBLB AKNA MYBL1 TGFBR2 PDE4D PLCG2 HMGB1 ZNF77 NOP58 IGFLR1 RAB37 JARID2 NRP1 ARSG AKAP13 PVT1 LINC01655 TMEM131L AL450998.2 KAT6A MINDY2 AFG3L2 EPC1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ASAP1 AKAP13 ERCC1 PACSIN2 LINC01588 FOXN3 ETV6 RAPGEF1 BCL9L ACTR1A PLA2G6 PRKAG2 AL359710.1 CD74 CPQ LPIN1 GALNT2 CYTIP AC093423.3 ATOX1 FNDC3B NHSL2 AC022217.3 RUNX1 TAF10 DNAH2 RBPJ EBAG9 NRP2 NEAT1 CDCA3 MAML2 FBXL19 ARMH4 ARRB1 NCOR2 ALDH1A2 PTPRE RALGDS MOB3A TPRA1 VILL RPN1 COTL1 DOCK10 ELMO1 MBP G3BP2 CSF1R GAS7 CRADD SERPINB2 PFKFB4 ARHGAP26 ABCA1 ABHD2 KDM2B CRTAP PFKFB3 SLCO3A1 AC079313.2 KLF9 DEAF1 AC008040.1 AC090559.1 MAGIX MAPKAPK3 CHD9 PKM SIK3 HIP1 RCOR1 ELMSAN1 PCDHGA1 YWHAZ PECAM1 CPEB3 ZBTB7A FMC1 NUMB ACSF3 GAB2 PTPRC UBE2D3 MAN2A1 AC005476.2 SIN3A AGO2 ZEB2 AC004069.1 LINC02357 BCL2 LIMS1 RASA3 NFE2L2 IL1R1 GNG2 EPC2 IKZF1 ZNF488\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAPGEF1 AC068896.1 ATXN1 LDLRAD4 RAD51B ZMIZ1 PTPN6 LPP AHR RUNX1 DOCK10 LINC01344 AKAP13 MGAT1 TIAM1 CHST11 NECTIN2 CDK4 AC079313.2 STK10 KDM2B MBP UBAC2 COL4A2 RIPOR2 ARHGEF3 ZEB2 RAB8B NEAT1 MALAT1 PLXDC2 TGFBR2 MAP3K5 ELMO1 PIK3AP1 SLC8A1 LIPH CPQ ACTB TSPAN14 NEDD4L CREB3L2 RPS6KA1 RB1 PRKAR1B TMEM53 IL21R MAN1A1 MAML2 PRKCA LIPA AK9 SH3PXD2A LDLR UBE2J1 AL139383.1 DIAPH2 MAMSTR HIVEP1 AC069368.1 KIF11 SHPRH LCP1 ITGAE THADA ZRANB3 RPS6KA2 LYST KRI1 DNAJB5 IQSEC1 EXT1 HIST1H2AH PILRA SLCO2B1 IGF2R ADCY7 LINC01004 SF3A3 ST6GALNAC4 STIM1 IL16 CCDC6 ZNF609 JARID2 PACSIN2 TSC22D3 CELF2 PAF1 ERCC1 SNX29 PAQR9-AS1 MBNL1 HIST1H1E HIST1H3A UVRAG ALOX5AP CDC14A PDE2A TAOK3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AL359736.1 IMMP2L AGBL3 FAM129B ZIM2 IL16 COL23A1 MED12L LCP2 MAML2 LDLRAD4 CSF1R SIN3A ZBTB20 BMT2 ZBTB45 ARHGAP6 RAPGEF1 TBC1D2B AC008771.1 WHAMM SLC9A1 ATXN1 RIN2 ENOX1 INPP5A MIR222HG DOCK4 SLCO3A1 GYS1 H3F3B RUNX1 RTN4 ABCA1 SMIM2-AS1 CDKN1B ARHGAP10 RDX NLRC5 ARSG ADAM12 AC138123.1 TAB3 CTSC ARHGAP25 MEF2C ZBTB7A KIFC3 SUB1 PCDH9 PAQR9-AS1 FAM20A FAM96A FAM227B SACS AC058822.1 IMP4 OXCT1 SHC4 A1BG-AS1 TIFAB SLC27A1 WAC-AS1 RAD51B AC068724.3 UBXN11 FLI1 LUCAT1 PSD3 UBE2D3 NEDD9 CCND3 TAOK3 GK UBAC2 TBL3 MSN PTAFR TSGA10IP PRKAG2 MT2A AKAP13 AC021752.1 LINC01431 HDAC4 ZNF804A AC007384.1 SGMS1 MAFF LITAF MYO5A PITPNC1 LACTB MKL1 ZNF800 TIGD6 MCF2L2 SMG7 ERP44 SLC27A5\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC016831.7 ATXN1 UBAC2 HIVEP2 TNFAIP8 MBP VOPP1 AKAP13 RAPGEF1 HDAC4 MAP3K5 LINC01588 FYN STK24 ETS1 TRERF1 RIPOR2 ASB2 RUNX1 PTPRC STK10 CDK6 RBPJ AL390957.1 FOXP1 RFX2 CFLAR MDFIC CSGALNACT1 STAG2 ETV6 DAAM1 MAST4 AP000311.1 HECW2 AHR CGGBP1 PRKCH AC068896.1 FOXO3 NASP ARHGAP15 ANTXR2 HNRNPUL1 IRF2 DOCK10 NEMP1 TGFBR2 RAD51B FYB1 ATP2B4 ASAP1 GPRIN3 PTPRE NDUFAF6 ARID1B P2RY8 HIVEP3 CPOX ARID5B TBC1D5 GRK5 MBNL1 TSPOAP1 CELF2 IQGAP2 TFEB OSBPL3 MBOAT7 IQSEC1 ITGAE PHF19 ARHGEF3 RASGRP3 C1ORF112 CD82 ST3GAL1 FARS2 MIR3142HG TG GNAI2 CCDC88C PFKFB3 GLB1 SEMA4D ARRDC3 CARD19 NEAT1 DARS CD6 SMAD3 EEPD1 SIK3 NBAS FYCO1 MED12L VMP1 CUBN WNK1 LCP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP25 LINC01588 EPC1 AC016831.7 RUNX1 ASAP1 CYTIP AKAP13 TBC1D14 MBP ANKRD44 HECW2 PLXNC1 TRABD2A CHST11 MAST4 SUSD6 CD226 HOOK2 RAD51B MBOAT7 CELF2 PPP2R5C IQGAP2 AMPD3 ITK HIVEP3 PHF19 PDE4B CD82 AHR PTPRC KAT2B CRADD CMIP NFKBIA RIPOR2 CDK6 TNFAIP8 ABI1 DUSP22 KLF13 C15ORF53 DOCK8 INPP5A MTPN ARMH4 ARID5B STIM1 DRG1 KIAA0232 CDCA3 ARID1B LIPA AC068896.1 AC096920.1 AL359736.1 ARNTL STK24 FYB1 ETV6 BHLHE40-AS1 PAG1 AL357060.1 AAK1 ETS1 MPRIP ATXN1 RORA-AS1 BTBD11 UBAC2 FOXP1 SEPT9 TNRC6B RRBP1 AC006449.6 P2RY8 GMFG SLC38A1 ATOX1 PATL2 HIVEP2 CSRNP1 ERCC1 ZMIZ1 PLCB1 HDAC4 CCNH RUNX2 TRAF1 SLC45A4 GPR68 SEMA4D MPP7 LINC00598 DUSP10 NLRC5 FOXN3 SGMS1 MIR3681HG\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 EBF1 CYTIP RAPGEF1 LHFPL2 PIK3R5 B4GALT1 AKAP13 AC090527.2 RB1 DLEU2 CHST11 RUNX1 AC069368.1 UTP3 NEAT1 CARD19 TGFBR2 CASS4 DOCK10 PPCDC ARRDC4 AC004922.1 ARHGEF2 AC010280.2 KLF9 ACTR3 FOXN3 SLC24A4 GSN CPQ TRERF1 MMP9 TNS3 MACF1 LMNA MTAP ANXA4 TFEB PFKFB4 P4HA2 TRG-AS1 EVL CFLAR STIM2 AP4B1 AP3D1 TLR1 PILRA SUSD6 AL121594.1 FAM120A IQGAP2 CD14 HAVCR2 AL138720.1 AL158071.1 PACSIN2 FRY HPS5 CD44 HM13 CCDC146 DLGAP1 SIK3 SLC6A6 MEF2C-AS1 PPP3CA NSMCE2 CEP128 CDKN1A UBASH3B SH3GLB1 ATP5F1E FDPS METTL9 ATG16L1 SERTAD2 NDUFA6 UPP1 ASAP1 TRAPPC3 LPP HBP1 CD59 CUL3 ELMO1 PREX1 HNRNPK UBQLN1 TRAM2 METTL8 NDC1 SH3BP5 ARHGEF40 MEGF11 CCND3 TGM2 LTBP4 RBPJ\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AP000311.1 PIK3R5 STIM1 ARHGAP26 FOXK1 PATL2 MGAT5 AP000295.1 CD44 MXD1 LPP GPR68 MARCH1 NOTCH1 RNF167 CUX1 KLF6 ZNF43 TMEM123 AC096920.1 RUNX1 NOP14-AS1 RBM47 ZNF365 ALOX12-AS1 IL31RA SFXN5 AC009313.1 U62317.5 IMPA2 NAIF1 ARID3B RCC2 HNRNPUL2-BSCL2 LINC01800 AC079313.2 CYTIP DTYMK MNT PLB1 ST3GAL6 NCOA7 FYB1 MGRN1 MCF2L2 SLCO2B1 THRAP3 TBC1D20 SEPT9 PELI1 INPP4A RBMS1 SP3 RAB26 AP3M2 C3ORF58 AC087645.2 TMEM14B ST3GAL1 PRPF40A PCNP AMPD3 KLHL6 NFE2L2 AC027644.4 ACTA2 XXYLT1 TGIF2-RAB5IF CRYL1 SUMF1 AC090527.2 DLEU2 KHSRP RPL10 AP002748.3 NHEJ1 MSN FMNL3 EXOC3 VMP1 CREBBP FBXO48 RAB6A RAPGEF1 CD22 MRVI1-AS1 DYNC1I2 FAM126B AC008957.1 GAS7 OLMALINC PSMD3 NANOS3 RFX7 TBC1D1 AAAS AC006449.6 ANKRD27 CASP8 NUTF2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MIDN VWF LPP RAB8B ZMIZ1 ETV6 MCF2L2 RRP12 RMI2 AL450998.2 TNFRSF1A CKB CHST11 KDM2B TG PIK3R5 STK10 RHBDF2 HIVEP3 ACADM STAT1 CIITA NRROS AC093423.3 AC007384.1 KLF6 BHLHE40-AS1 NR4A2 RB1 CCDC12 NEAT1 KLF7 DPYSL2 ALG5 TAPBPL RSPH14 VAMP1 KLF16 MTF2 FNDC3B CDKN2C LRRC8C AL049557.1 PARP2 VAV3 RAP1A SPATA24 GRK3 LINC01135 STK40 CROCC AC022113.1 SNX20 SLC15A3 ATG5 DENND4B GPR132 COTL1 PRKCH IL10RA TTC7A SCAMP4 SLC8A1 FAM102B FCER2 DOCK4 AC090559.1 NAPA PCDHGA1 DNAH1 AL356417.3 EDEM3 CRTC3-AS1 PSMB9 CYTH4 COQ8A ABCA1 CIPC LRMDA SORCS1 MACF1 ZBTB14 SDCCAG8 LINC01011 JAK2 SSH1 NOTCH1 TPT1 LINC01588 TRERF1 ASAP1 HINT1 MBNL1 FPR1 SLAMF8 MARCH2 CCDC107 RNF123 ABCB9 MIR29B2CHG\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 FOXP1 ANKRD44 AC068896.1 IKZF1 PRKCH ETS1 PIP4K2A RUNX1 HIVEP2 TNFAIP8 BACH2 RIPOR2 KLF13 AKAP13 MAML2 LINC00598 ARHGEF3 ARHGAP15 RAD51B BCL2 ITPR1 CELF2 TNRC6B PTPRC FYN CASP8 ST3GAL1 MBNL1 MBOAT7 DNMT3A PCED1B GATAD2A ARHGAP26 ATXN1 HDAC4 CDC14A TRAJ28 SEPT9 ITK SPTBN1 LINC01588 C15ORF53 MIR29B2CHG AC016831.7 ARID1B STK10 IMMP2L CHST11 PITPNC1 BICRAL AC009126.1 P2RY8 ATG5 ELMO1 IL7R XPO6 ANKRD11 RORA-AS1 TCF7 PATL2 CHFR BICDL1 CCND3 AC079313.2 TGFBR2 BCL9L FYB1 MAP3K3 NCK2 TBC1D5 RPTOR CYTIP AC010894.3 SORL1 PAG1 CMIP DOCK9 APBB1IP EVL ITPKB CDC42SE2 ANK3 SERTAD2 STK17B CARS2 MNT DNAH2 RAPGEF6 FOXN3 HLA-DMA ARRDC3 BCL6 AC024257.3 SH3KBP1 HECW2 ZC3HAV1 CBLB OSBPL3 SNX9\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FYN ATG5 PRKCH ITPR1 CCND3 PREX1 RFFL STK10 HNRNPUL2-BSCL2 MYBL1 TSPOAP1 SASH3 CELF2 HDAC4 AC008105.3 DYNLT1 NFATC2 ZNF395 ADAP1 AC068896.1 ZNRF2 ARHGAP26 GPR68 DOCK8 ANKH LTA SGMS1 AL359710.1 TECR HNRNPUL1 ANKRD44 RPS6KA5 SFR1 SPAG7 PPP2R5C RNF167 TXK TRAJ28 SYNE1 TMEM189-UBE2V1 FAM102B ZC3HAV1 ARID5B FLI1 RB1 SH3KBP1 ATP2B4 AL139246.3 FLNA PDE4B KLF13 SLC38A1 ARHGAP15 WDR78 CHD9 MSI2 PVT1 GRK6 STK17B IL10RA ATXN1 UBASH3A BRD7 CCDC26 LMO4 KHNYN DNM3 ZYX ZFP1 LTBP4 TOM1L2 AC069368.1 TOLLIP TMEM43 ZBTB2 PEAK1 LPP TMIGD3 PPP6R3 SSH2 MIA3 GATAD2A N4BP3 PAG1 DAZAP2 CEP83 LINC01353 MAP3K1 TNRC6B CD28 AC016831.7 EGR1 NCOA2 HECW2 RGS3 ST3GAL5 SERINC5 SLC12A6 AZI2 RASGEF1B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 FOXP1 PIP4K2A AL359736.1 ASAP1 ARHGEF3 RUNX1 FYB1 AKAP13 BCL11B ARHGAP25 NEAT1 TGFBR1 RIPOR2 CHST11 BICDL1 LINC02384 LRBA FKBP5 FYN PLXNC1 GNG2 AC010894.3 IKZF1 PRKCB PRKCQ MCF2L2 ETS1 ATXN1 PVT1 VMP1 AC068896.1 KIF13B AC009226.1 DRAIC KDM2B ELMSAN1 ATG5 ACTR1A AHNAK RORA KLF13 ANTXR2 CFLAR ZEB2 AL138720.1 ZFP36L1 PDE4B ARID5B PRR5 IL21R GALNT2 GNAO1 NFE2L1 RERE CMIP EDEM3 CTIF PITPNC1 TRAJ28 UST ATXN7 EIF5A NFATC2 NFKB1 MAPK1 CDH23 CDC42SE2 GRK2 OSBPL3 MYO18A STK10 ELOVL5 LINC01588 SLC25A26 DNMT3A BICRAL LMNA BACH2 HMGB1 CYTIP PPP1R16B RAD51B USP12 PPM1B UBAC2 LINC01135 AHR XXYLT1 SART1 BCLAF1 WDR74 PAQR8 XYLT1 L3MBTL3 INPP4B NLRC5 SGMS1 CHD1 PTPN2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 ZMIZ1 ETV6 ETS1 AC008764.1 RAPGEF1 AL138720.1 ELMO1 HOOK2 PRKAG2 PSTPIP1 CELF2 CDH23 ASAP1 MBP ZMIZ1-AS1 MOB3A CD44 CHST11 SUSD6 PTPN6 ATXN1 CD82 ERN1 SSPN SPIDR AC022826.2 GRK6 LPIN2 PRKCH TG IQGAP2 CELF1 AC020916.1 MANBA LDLRAD4 AC022182.1 ARHGAP26 CMKLR1 VDR CPQ ZNF365 AC090559.1 SETBP1 AL357060.1 SLCO3A1 DUSP22 AC090527.2 ARHGAP22 LIPA AHNAK C16ORF45 RBPJ KANSL1 PACSIN2 LRRFIP1 AL035530.2 TIMP2 TSPOAP1 CSF1R PIK3R5 PPCDC FARS2 AKAP13 GAS7 DCTN4 ALDH1A2 ANXA11 GNG7 KLHL2 RASA3 NDUFAF6 KAT8 MAML3 RBM47 ARHGAP24 EMP1 PATL2 GPX4 MAP3K12 FBRS ABCF2 TRERF1 TLCD2 SH3TC1 SH3KBP1 PDIA4 UST KCTD9 ADK FOXK1 SGMS1 SEPT9 CDKN1B SEC14L1 ACTB CD55 PLXNB2 MYO18A GFOD1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH ATXN1 NFATC2 KLF13 ARHGEF3 CD247 TSPOAP1 ARHGAP25 FOXP1 RUNX1 ITGAE RIN3 ARID1B ABHD15-AS1 PPP3CA PREX1 IKZF1 PTK2B ARSG SEPT9 SPIDR MBP ARHGAP26 HDAC4 SIN3A FKBP5 DNMT3A VAV3 FAM49B RIPOR2 UBAC2 PLXNA4 CDC42SE2 LPP BCL6 PIP4K2A FOXO3 DNM3 CBLB GAS7 FYB1 RORA-AS1 AC104695.2 BICRAL SLC25A26 PTPN2 TCF7 AKAP13 TNRC6B BACH2 DUSP10 TLE4 CRTC3 KLRD1 ZDHHC14 GATAD2A TNFAIP8 RAD51B SEMA4D AKNA TRGV10 ZMIZ1 LINC01004 JAK1 ELMO1 RPS6KA5 ELL HOOK2 FNDC3B P2RY8 NBN TRAJ28 CCND3 CCDC88C PPP2R5C TBC1D5 GSK3B PDE4D IL2RB RAB11FIP4 LASP1 PTPRJ TTC33 BICDL1 LIPA ASAP1 LCP2 CELF2 AHR LEPROTL1 CEMIP2 BRF1 DOCK9 ATOX1 MBOAT7 MACF1 EPC1 MBNL1 PTMA FBXO31\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 RUNX1 PRR5L FOXP1 CD247 SEPT9 MBP ATG5 KLF9 KLF13 SIN3A CBLB ANKRD44 PTPRC LINC01588 PPP2R5A FYN PLCL2 RALGDS ZEB2 PLXNC1 IKZF1 FOXN3 MSI2 BCL2 ELL RUNX3 OSBPL3 AC093010.2 FLNA AKAP13 LINC00861 HIVEP3 PRKCH LINC01135 SKI BCL2L1 GSE1 RIN3 DNAH2 CELF2 LPP FKBP5 RASSF3 TSPAN14 PLCG2 TBC1D5 PREX1 CHST11 STAT4 MYBL1 STK17B KLRD1 AL035530.2 TTC33 SYTL2 TBC1D1 CCND3 PSTPIP1 AL390957.1 PEAK1 RHOF STIM2 ZFP36L1 GNLY LFNG HS1BP3 SSBP3 TIAM1 PLXNA4 ALDH1A2 ARHGAP15 MSN ARMH4 TMEM143 RWDD2B PTPRJ TNIP1 ITK MIS18BP1 SUSD6 NFATC2 AC008105.3 ZMAT3 AFAP1 EFNA5 AC022182.1 CCNY ABLIM1 NFKB1 DLGAP1 IKZF3 UMAD1 PPM1B BCLAF1 ADAMTSL4 MNT ZBTB2 EIF5A AL450998.2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ERCC1 CD247 ZFP36 MSI2 MACF1 ARHGAP26 HIVEP3 MBNL1 MBP ITGAE TSPOAP1 RABGAP1L TG FYN ARID5B SKI PATL2 PREX1 GRK5 PIP4K2A INSR NFIC RAPGEF1 KLRD1 ZFP36L1 CD96 TMEM131L LINC01126 BHLHE40-AS1 GSE1 CTIF HNRNPUL1 ABHD15-AS1 PSD4 IL21R CXCR4 ATXN7 TMEM192 PLXNA4 HNRNPL SEPT9 IGF1R KLF13 EGR1 IKZF1 IFFO2 TLCD2 RALGPS1 LINC01135 MAP3K3 PRKCH GFOD1 RUNX1 TBC1D1 CDK6 BCL2 CREBRF ZEB2 CAMK1D SPIDR LFNG AC020911.2 ZFYVE28 AC093827.5 EHD4 CRADD ANKRD11 HOOK2 ECE1 HIPK2 IL2RB LIPA ARHGEF2 FAM107B AL390957.1 EFNA5 HDAC4 RALGDS KANSL1 ANKRD44 NR6A1 SEC24C SP3 TMEM143 LINC01366 OSBP AC068896.1 GPT2 NEMP1 AGPAT1 ZNF846 RB1 SYNE2 AC015849.5 SLC38A1 STK17B EIF4B KLF6 CXXC5 TSPAN14\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 FOXP1 SEPT9 SORL1 BCR ARHGAP25 CHST11 B4GALT1 CELF2 MBP CFLAR AC009226.1 TSPOAP1 MAP3K3 DOCK3 IKZF1 NCOR2 DRG1 DNM3 RALGDS KLF13 AC020915.5 GNG2 CRYBG1 BCL11B ACAA2 C10ORF143 DLGAP1 PIP4K2A GRK2 DRAIC CD96 WWOX SDR42E2 RIN3 AC068896.1 SP1 ASAP1 PCED1B HAVCR2 ITPR1 PTK2B AAK1 C19ORF38 TAGLN2 LEPROTL1 PTPRE MGAT4A PLEK PPP2R5C SNRPD2 TNIP1 ARHGAP10 SPTBN1 NLRC5 IKZF3 PRKCH STK24 GALNT2 AP000311.1 GFOD1 AC069368.1 MGAT5 SYNJ1 PREX1 CPEB4 UBE2S PXN DOCK10 ZFP36 DNPEP BAZ1A ACOX3 SUCLG2 LINC00271 C3ORF58 CCDC88C EPC1 MR1 LINC00299 AKNA AL138720.1 RUNX1 AGO2 BLVRB VPS9D1 PRKCB NME1 HIST1H2BI MTSS1 POLDIP3 TNFSF8 ATG5 FAM49B INSIG1 GPR68 EML6 HNRNPUL2-BSCL2 STK10 AZI2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CDK6 ABLIM1 SEMA4D SMAD3 BHLHE40-AS1 MBP C1ORF53 IL32 PIWIL4 CHST11 GSK3B AKAP13 NHEJ1 LINC01588 CD247 CELF2 RNF44 AMPD3 POLR1A LPP ABCB9 EZR WDR1 MERTK TBC1D5 LRIG1 HIPK2 NOL4L PIK3CD PDE4B MBTPS1 KANSL1 RERE TRIM8 PTPRE AC009486.1 HS6ST1 SESN1 AL591885.1 TRABD2A AL590640.1 AC055713.1 ALDH1A2 PIP4K2A AC073934.1 ANKRD44 BRD7 XYLT1 ZSWIM6 RNF4 RIPOR2 MBLAC2 ETS1 DNPEP IFNAR1 GMPS UTRN JOSD1 E2F3 FAM107B ATG5 APBA2 INTS9 NUB1 AC068896.1 KIF2A UBE2R2-AS1 DNM2 ARHGAP15 AUTS2 CEMIP2 MSI2 CD38 AC145422.1 SMG6 GPR68 OXSR1 CNNM2 LPIN2 ECE1 FYN LNX2 OSBPL3 LINC02175 STAP2 PIGU TOX SHANK1 FAT4 CC2D1B POC5 VPS35L SECISBP2L STK25 HSPA5 RORA-AS1 DHRS3 RUNX1 MIB2 ERCC1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 FYN FOXP1 LINC01934 AL035530.2 CMIP RMI2 LINC01588 PTPRE TG FAM49B MGAT5 RIN3 MBNL1 SPIDR ELMO1 LIPA FOXO3 HIVEP3 VMP1 TSPOAP1 ATG5 AL390957.1 TNFAIP8 CSGALNACT1 UTRN SMG6 PRKCH PCGF5 ISG20 ADGRE3 AL162377.3 KRAS RUNX1 BCL11B PCED1B PATL2 RASSF5 AC008695.1 RORA-AS1 RAB27A TBXAS1 PTPRC HM13 PTCH1 CD99 PLCD1 DRAIC MBP TAF12 AKAP13 FBXO31 MIR3681HG TTC33 PITPNC1 PRKCE ITPR1 PIP4K2A MAPK1 CDV3 ACVR1B CD247 PRF1 PARP11 CFLAR CCDC102A CELF2 TGFBR2 ASB2 SLC11A1 RBM23 CYTIP ATXN1L SSSCA1 TRABD2A CARS2 NCOA2 AC093010.2 XKR6 IQGAP2 RTN4 CDKN1B ATP2B1 KIAA0513 RYBP ARHGEF3 ZNF217 ZBTB16 APLP2 CHST11 ITGAE TMEM189-UBE2V1 LFNG LINC01126 LINC01004 GALC RAPGEF1 RHOA WDR1 SERTAD2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP25 RAPGEF1 ITPKB IKZF1 FOXN3 AAK1 RPS6KA2 STK10 TSPAN18 RASA3 HECW2 ARHGAP26 CIC RIN3 PREX1 SERTAD2 IQSEC1 ASB2 SH2B3 CD247 RUNX1 CELF2 CSGALNACT1 ZEB2 AC008667.1 TRANK1 VGLL4 FNDC3B TSPOAP1 DLGAP1 FOXP1 CMIP GATAD2A CBLB VAV3 STK17B OSBP CHD4 USP36 SRBD1 MEX3C PTK2B RAD52 CDKN1B ACOXL IQCD OGDH TSPAN2 LIPA NFIA CCDC9 CNDP2 RGCC GSK3B AC068896.1 CHD7 CHST11 HIVEP3 ITPK1 AC016831.7 STN1 GFOD1 MAPKAPK2 ZNF609 VPS16 AZI2 AL136295.1 UMAD1 TRAPPC3 TMEM143 AC008764.1 ING5 ELL ARHGAP31 LINC01934 NBN CDR2L BCLAF1 LCP2 TNRC6C CCDC12 NUB1 HOOK2 TNFAIP8 PIK3R1 LINC01358 ITGAE ZSWIM6 INSIG1 MARK4 FBRS MRGBP PLXNC1 AC022217.3 ANKRD44 EHD4 PWWP2A STRIP2 AC093010.2 LPIN2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 CD247 PRKCH CELF2 ZBTB16 AC010894.3 RUNX1 ATXN7L1 FYN KLF13 RAD51B LIPA FAM102B CFLAR AOAH AL359736.1 ELMO1 AC093010.2 ZFP36L1 PLCG2 MBP ST8SIA1 SEMA4D HIPK2 BACH2 TTC33 DNMT3A PIP4K2A FYB1 EFNA5 MAML3 JAZF1 FOXP1 MAP3K14 ALDH1A2 LINC01004 P2RY8 MNT PITPNM2 HDAC4 ARHGEF3 AUTS2 STAT3 PREX1 BCL2 PITPNC1 ANKRD44 PRKCQ EPHA4 NF1 SPIDR STIM2 DUSP10 RIN3 RAD23B DDX60L CD96 HIVEP2 IQSEC1 ZNF831 GATAD2A MGAT4A GAS7 FAM129A PATL2 ABHD15-AS1 PLXNA4 GM2A ZNF217 GSE1 STIM1 INO80B ARSG SETBP1 PPP2R5C GGA2 MAN2A1 LRCH1 CDKN1B ETS1 PLAC8 SLC9A9 AL138720.1 DCAKD ARID5B AAK1 STAG2 SRGN CDC42SE2 APBA2 RAB27A ARID1B NR5A2 KANSL1 TLE4 MAML2 AL132671.2 STK10 ANKRD11 GEMIN7\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: IQGAP2 ANKRD44 SEMA4D FYN PRKCH AL035530.2 ARSG TNFAIP8 ARHGAP26 TRPS1 GPR68 P2RY8 TNK2 ITPKB PPP3CA SEPT9 RUNX1 CAMK2D IQSEC1 RERE RAB37 CASP8 KLF13 PTK2B MIR3681HG H3F3B APBA2 PATL2 SERTAD2 PIP4K2A PIK3R5 APBB1IP AKAP13 ST3GAL1 TRERF1 ATP8A1 ANKRD23 MED15 NR4A2 ATP2B4 LEPROTL1 ZFP36 ACTB HDAC4 LFNG ABHD15-AS1 DOCK8 ITK RARA MSN IL2RB ABHD2 SETBP1 PRPF40A SPTBN1 TGFB1 DNAH2 DNM3 SUPT3H GRAP2 MSI2 SLC2A1 PREX1 CRBN STK10 ECE1 DNMT3A AC010894.3 PRKCQ FOXN3 GATAD2A CMIP CDC42SE2 MTSS1 ZNF365 AL390957.1 GSE1 CUBN RNF167 IKZF1 UTRN BICRAL AC093010.2 DESI2 AC068896.1 RRM2B PLCL2 FOXP1 LRRFIP1 PPP2R5C MCF2L2 NCOR2 VAV3 TMEM135 TBC1D14 ANKRD11 JADE2 AC016831.7 RIN3 TMEM18\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AKAP13 RUNX1 ZFP36L1 CD247 APBA2 VGLL4 PRKCH RARA SEPT9 PITPNC1 LINC01135 PXYLP1 HNRNPUL1 CXXC5 RASSF5 DNM2 SESN1 AUTS2 AC079313.2 PRKCQ PDE4D CYTH1 AC011498.1 ARRDC3 ADAMTSL4 RABGAP1L CNNM2 MTSS1 ATXN1 BHLHE40-AS1 GATAD2A GNAS RB1 MEX3C BACH2 IKZF1 U2AF2 FIZ1 ANKRD11 FSIP1 LPXN AC093512.2 MROH6 CKS2 RIPOR2 FYN HIST1H1B ATP2B1 SYTL3 PSMA1 AC022217.3 CTNNBIP1 MAST4 LINC01358 TRGV9 ZDHHC14 JARID2 INPP4A LRCH1 SMAD3 PIP4K2A NOL4L SYNE2 SYTL2 HIST1H2BC CSGALNACT1 PRRC2B COPS2 SLC17A5 DLEU2 DUS2 KLF6 INTS6 HMGB1 IKZF3 UBP1 WAC-AS1 LINC01934 FBXL19 SUSD6 STK39 KLF13 LASP1 ACOX3 SCML4 LFNG EIF4G3 MAP3K14 MTMR4 BCL2 FKBP2 AF241726.2 LMCD1-AS1 BAP1 EPC1 DYM LAP3 ZBTB2 TBC1D2B FAM49B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 CELF2 AKAP13 ZSWIM6 CIC MBP GRK5 PIP4K2A CBLB GNG2 CD247 MTSS1 MKLN1 KLF9 AC020911.2 DENND2D IKZF1 CCDC32 USB1 STAT4 PITPNC1 HLCS ITPKB RUNX3 DENND1B CD300A PREX1 AHNAK AC068896.1 IGSF9 NRL SEMA4D TRAJ28 PNKP CD226 WDR89 SKIL UBE2D3 ADGRG5 LINC01588 AC010894.3 ZMIZ1-AS1 TRIM33 SEPT9 PLCG2 RHEB SIK3 EFNA5 MSI2 SLC39A10 SLCO3A1 UEVLD SDR42E2 ZNF566 FBXO41 GPR68 TLE4 MIR29B2CHG ANKRD33B USP3 RIN3 VAV3 NDUFV2 KAT6B ZNF681 PKNOX1 HIVEP3 LPAR2 PTPRC SLC2A1 LRIG1 GRK6 CDC42SE2 AL928654.3 AL136018.1 FYN BCL6 RAP1GAP2 AC006369.1 KIAA0319L DRAIC SSSCA1 NOP14-AS1 DCTD ARHGEF3 CXORF40B ZNF43 PAN3 AL606489.1 EPS15L1 ELOVL6 AC019163.1 PTPN12 SPOCK2 RBPJ ARL10 ARID5B TG USP34 TSPAN14\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CD247 ANKRD11 HDAC4 PRKCH ZBTB16 FOXN3 DOCK10 MBP NFATC2 ARHGAP26 LINC01841 CHST11 FOXP1 HIVEP3 AC010894.3 HNRNPUL1 P2RY8 ITPKB ARAP1 TSPOAP1 TNFRSF1A RALGDS SLC2A1 PLXNA4 FSIP1 XYLT1 IL2RB CBLB ARHGEF3 STK10 EHD1 PRKAG2 ERCC1 ZBTB25 SORL1 NEMP1 KLF9 TCF7 PIP4K2A RUNX1 ELMO1 HNRNPL LINC01126 AC007163.1 ADGRE5 YARS GNG2 KLRD1 SPTBN5 DNM3 EPS15L1 DUS2 CELF2 TMEM163 RAPGEF1 PATL2 GRK5 TSPAN14 AOAH GPR68 MAML2 RGS3 RIN3 CDK6 AL450998.2 LRCH1 TMEM59 SEMA4D TBXAS1 SUMF1 FAM69A FAM117A LIPA AC243960.1 KIF22 MRPL4 BCL9L MAP3K3 CDC37 FYN PLEKHF1 PHLPP1 TMED10 ACTN4 TRERF1 VAV3 XRCC1 ITPR1 CDKN1B LTBP4 UBE2D3 GNAL ZNF250 DNM2 PFKFB3 RBM6 TENT5A PISD RAB4B-EGLN2 PREX1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AL138720.1 STK10 P2RY8 KAT6B AOAH AC009126.1 NEAT1 TMEM131L SMAD2 HIVEP3 RUNX1 RAD51B AC010894.3 FOXP1 KLRD1 HIVEP2 ZFP36L1 ITPKB PURB APBB1IP IKZF1 INPP5D CDKN1B EGR2 POLR1A MGA UST SYNE1 SMG6 TG SEMA4D TGFBR2 USP45 CARS2 ZDHHC14 ADAP1 GATA3 AC016831.7 LINC00299 PRKCQ DLG5 PPP3CA TRERF1 PALM2-AKAP2 HTT SH2D2A MSI2 STAT4 CDYL RAI1 ZFC3H1 CTIF RERE CD300A AL138752.2 MCM6 PTGER2 BICRAL GNG2 FYB1 HS1BP3 TAF15 LINC02328 TSNAX-DISC1 AC093010.2 PCDH9 JARID2 DOCK10 ELF2 WDFY2 ARHGAP26 PTPN22 RNF126 TEX264 MBNL1 LCP2 NCALD DENND2D NEMP1 ZBTB44 RASGEF1A TES FAM107B TSPOAP1 HDAC4 RCL1 RAD52 LINC01588 LINC02384 CACUL1 MYCBP2 PLA2G6 TTC33 MEF2D LPP UBAC2 LINC00271 IQSEC1 AC103736.1 HYLS1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX3 AC022075.1 RUNX1 GNG2 ST3GAL1 FOXP1 FAM107B TRABD2A ZBTB16 RNF4 SEC14L1 FOXN3 NKIRAS1 NR6A1 GSTM5 TIPRL ITPKB MIB2 SORL1 FYN CFLAR NUP210 DNM3 KLRD1 CHST11 SEC22C CORO1A CYTH1 LNPEP B4GALT5 GIMAP1 NQO2 AC035140.1 SPRY4 LRRC23 KLF13 PITPNC1 NANOS3 C9ORF3 AKAP13 HMGB1 TMEM131L PER2 ITPR1 AC018816.1 SEPT9 ERBB3 WAC-AS1 ACTN4 AAAS TGIF1 SEMA4C CBX8 AC027309.1 CCND3 TLDC1 NUMA1 TNIP1 C21ORF91-OT1 CYHR1 LINC02384 STAM LYRM4 ARHGAP26 AP005329.2 GINS4 RPS6KA5 EMC1 CHI3L2 BCL6 TMEM143 ZNF831 TTYH3 PLCG2 RALGDS KCTD9 MOSPD3 IRF8 NUBP1 ATG10 KANSL1 NT5C3A FAM210B TOGARAM2 MEF2D DNAH2 NSUN6 CXXC4 LINC01135 DOCK3 MARK3 RNF146 AC093010.2 EGR1 PDCD10 LYSMD4 TMEM181 CEP290 ETV7 PYGM\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 IKZF1 NFATC2 CC2D1B LINC00598 RPS6KA2 KCTD7 CCSER2 PLXND1 SEL1L PDCL3 PTPN4 SYNE1 AL161912.1 FLVCR2 MRPS27 CBLB MAGED1 AC117394.2 INTS6L SP3 SCML4 AMZ2 MSH2 PIK3R3 CHST11 SCUBE1 ANO10 UBA3 FAM72B ZFP36L1 AC078883.1 SLC16A7 LINC02356 SIK3 TOGARAM2 ARL8B SUSD6 RLIM NEK3 UMAD1 TPRA1 SH2D3A NDP-AS1 ZNF708 ERP44 STK4 KCTD9 AL158071.1 SF3B6 LMBR1L COL23A1 MOB1B BACH2 ST8SIA4 EPHA4 NECAB3 RNF44 IDS MTURN COTL1 SORL1 SSUH2 ABHD15-AS1 FAM117B RBMX FBXL12 DHRS3 STEAP3 HYAL3 ABI1 CA5B ARID1B PNP BCL6 AP003068.1 FOXP1 IER5 SWT1 ABHD10 MXD1 RWDD2B TPRN LRP10 SESN1 TRPV2 NMT2 CD226 ZNF800 PRKCH SDHAF4 YTHDF3 LUZP1 SEMA4D AL392023.2 AJ009632.2 STAG1 ECHDC1 NEK1 TIAL1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH RUNX1 AC016831.7 IKZF1 FYN CD247 FOXP1 ZFP36L1 FADS2 RUNX3 CCDC88C AL162377.3 LINC01588 PTEN MLLT3 CSGALNACT1 FYCO1 TBC1D1 LINC00426 SNX9 BCL2 JARID2 AUTS2 CMTM7 UBAC2 MAP2K2 LEF1 PCED1B HSPH1 NR4A2 MAPRE2 EEPD1 HNRNPUL1 ITPR1 AMER1 TCF7 TLE4 MDM4 PRPF40A ZNF831 FAM107B MAST4 SLC30A5 HDAC7 AC010894.3 FLI1 SLC25A26 SYTL3 AKAP9 DNMT3A SOD2 CYTIP TNRC6B IQCB1 CYTH1 TOX2 DDX54 MR1 GSTA4 IMMP2L H2AFV CHD1 NUP210 ARHGAP26 ADAMTSL4 CROCC GPD1 DLEU2 WDR82 VAV3 STAT4 ETV6 DDX60L PCF11 ATOX1 CLEC16A FARS2 BICRAL TOM1L2 B4GALT1 SCLT1 FAM117A BACH2 MCM9 ETS1 SETBP1 CAST PRAG1 CEMIP2 FGD3 PRF1 SCML4 ARHGAP25 FAM172A LEPROTL1 MPP7 CD226 GPBP1 GNAQ AL031599.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 PRKCH GNG2 ABHD15-AS1 MBP AKAP13 RORA-AS1 TG RAD51B ARHGEF3 FAM117A CHST11 CDC42SE2 CDKN1B FOXN3 ENC1 HIVEP3 GRK5 EIF3H AC016831.7 ARHGAP26 ERCC1 IKZF3 SUMF1 FYN ARID1B LINC01126 FSIP1 RIN3 LPP PLXNA4 PPP2R5C NDUFV2 APBA2 ERBIN PLXNC1 PITPNM2 SEMA4D GAS7 RAB11FIP4 ITPKB CD226 FOXP1 AP000311.1 KLRD1 APBB1IP AL390957.1 KLF6 XYLT1 PJA2 ASAP1 C1ORF174 TNIK CELF2 DACT3 UBAC2 PALM2-AKAP2 ZBTB16 DOCK10 SMAD3 SLC25A26 ST3GAL5 JARID2 RASSF5 ATXN1 NEDD9 CD247 KLF13 PTPRE FNDC3B PHLDB2 IQGAP2 BCR TNFAIP8 IGF1R ANKRD44 ARHGAP25 TCF7 ACTN4 SYNE1 DLEU2 RHOF RASSF3 IQSEC1 PREX1 MATN1 LIPA IFFO2 EMC9 NFATC2 PTPRJ ENSA MBNL2 TRIM8 GGA1 ZNF395 HIRA ARHGEF1 CDC42 CROCC\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH RAPGEF1 ITPKB ARHGAP26 PLXNA4 MBP RIN3 RUNX1 SEPT9 TNFAIP8 CELF2 JAK1 NDUFV2 BHLHE40-AS1 GPR68 ITPR1 AC068896.1 THUMPD3-AS1 ATXN1 CROCC AKNA KIF2A CHST11 PITPNC1 RASA3 CD247 ARSG KLF13 LINC01588 APBA2 TMEM131L PRR5L GFOD1 RAD51B CDC42SE2 LINC00861 TNIP1 CTIF SESN1 PIP4K2A CCDC88C LINC01126 DLG5 MBNL1 GSK3B GAS7 MTSS1 ARHGEF3 STAG2 TSPOAP1 ZEB2 SP4 ASMTL PTPRC KLF9 STX10 BCL2L1 ESYT2 SUSD6 PDE4D CCDC12 CTSC INPP5A LIPA CDH23 FOXN3 PATL2 HIVEP3 STK10 KAT6B PRDM10 ANKRD44 CCSER2 FYN LINC00299 RBMS1 UMAD1 XYLT1 GSE1 AC009126.1 AKAP13 TLE4 CCNJL FSIP1 EHD1 JARID2 AL139246.5 SH2B3 FAM49B FGD3 UTRN TSC22D1 RHOBTB3 ELOC MAP3K3 MAPK1 C1ORF21 FAM107B DNM2 LRCH1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARAP1 ZBTB16 ZNF365 ZBTB25 PER1 AUTS2 CD247 MBP RIN3 AC069368.1 PLCXD2 GATAD2A ASCL2 SIN3A POU2F1 HNRNPL SDE2 DUS2 PLXNA4 MYO1F TGFBR2 ANO10 HDAC4 LINC01934 PCED1B AC005775.1 AF241726.2 SORL1 IQSEC1 CAMK2D RAP1A FADS2 IFT140 EIPR1 TMEM116 TLE1 CHD8 VRK2 CCDC9 GNGT2 RUBCN DIP2A DOCK5 FAM214B IQGAP2 FRYL ETS1 ST3GAL2 AOAH TNIK ARRB1 RARA ARHGAP25 HCFC1 VPS37C AC008667.1 TCP1 LNX2 STAT4 GMPR PEF1 NUMA1 ADGRG1 RUNX1 SLC15A4 AC020911.2 C1ORF174 RALGDS AL357078.1 DNAJC21 TSPOAP1 CLIC3 LPCAT1 ZFYVE28 HECTD1 ZSWIM6 RNF44 FAM117A SESN2 AC009126.1 CST7 ST3GAL1 MGAT5 GYS1 LRFN2 AC068896.1 GPR68 MGAT4A FBXO43 BCL2 CDC42SE2 AL691403.1 AL359736.1 CDC25B CDCA3 BORCS5 RPS9 BHLHE40-AS1 RAB27A AC025682.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 SEPT9 MBP IL2RB LTBP3 ZEB2 CMIP IKZF3 RALGDS BCL2 XYLT1 SEMA4D RNF167 SH3KBP1 CHST11 HNRNPL RIN3 AC008764.1 SKI CIC ARHGAP26 NFATC2 PLCG2 DLG5 BACH2 NEAT1 HDAC4 ITPR1 CAMK2D PREX1 HOOK2 AC016831.7 FAM102B RUNX3 HNRNPUL1 FAM107B STAT4 SLC45A4 TSPOAP1 CCDC9 AKAP13 TRERF1 FYN CCND3 RGS3 SLC2A1 GATAD2A CDHR3 LINC01968 HIVEP3 RASA3 CSK PRR5L CAMK1D CCDC12 APBA2 FHIT BCAR3 VIM-AS1 ANKRD44 ITGA6 PITPNM2 AC008014.1 ITK ITGA4 PTPRC GRK2 PRKCH ELL RAD51B NF1 PCGF5 MIR3681HG LRRFIP1 TLE4 LIPA ARHGAP18 OTULIN ZFP36 EPHA4 CELF2 CROCC DAD1 IQSEC1 CXXC5 MARK4 MSH2 AC079313.2 CBLB C15ORF53 ZNF592 DNAJB12 AC116366.3 AL139807.1 C7ORF50 CD247 SMG6 KAT2B CFAP97 RMI2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 ARHGAP26 CHST11 ANKRD11 ANKRD44 FOXP1 NEAT1 PITPNC1 FOXN3 RAD51B CDC42SE2 PRKCH RAPGEF1 AKAP13 CD247 AKT3 AC068896.1 ZBTB20 IQGAP2 AC009226.1 CELF2 HIPK2 LINC01588 FYN HIVEP3 JARID2 BCL2 ATG5 MBP RIN3 RFX3 LPP MBNL1 KLF13 DLGAP1 BCL2L1 FNDC3B ITPR1 FYB1 CD226 MIR3681HG BHLHE40-AS1 RHOF AC008667.1 CBLB CYTIP NCALD B4GALT1 HDAC4 ICAM2 AC243829.4 NFE2L2 BCL6 CTIF IQSEC1 KLRD1 ST8SIA4 PTPRJ GNG2 AKNA PRKCQ SEMA4D TNIK TTC33 GNG7 RUNX3 SPIDR NEMP1 KAT6B INPP4A RRP12 SORCS2 AC008105.3 MAP2K3 CD58 TRGV10 KAT2B TBXAS1 DNM3 MIDN ZNF365 PKM AL160408.2 ELMO1 APBA3 SUMF1 PRR5L HIVEP2 PIP4K2A AAK1 SLC15A4 AL359736.1 CSGALNACT1 KLF7 TBC1D14 AL035530.2 TRAF1 PATL2 CAMK2D CDC37\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH ACTN4 SEPT9 IQSEC1 KLF13 FYN PREX1 BCL2 KANSL1 ETS1 MTSS1 ANKRD44 APBA2 CELF2 UBE2D3 ARHGAP26 STK10 MIDN AC016831.7 AL390957.1 TSPAN14 IQGAP2 CD247 CHST11 ARHGEF3 RIPOR2 HIVEP3 GAS7 PITPNM2 MCTP2 PTK2B BICRAL FOXP1 RAD51B MNT AKAP13 GNAI2 LFNG ENC1 MBP FBXL12 TSPOAP1 KLF6 CNNM2 TBC1D5 EPC1 MAP4K4 PTPRC IL2RB AC068896.1 FNDC3B ITPR1 AKNA PAQR8 PIK3R1 CAST FAM49B IKZF1 FSIP1 ERCC1 WWOX HNRNPL RALGDS PNKP DRAIC CD300A FAM117A BHLHE40-AS1 MAP3K3 SMAD3 ZCWPW1 RAI1 RIN3 PPRC1 LINC01588 ZNF837 SLC2A1 EVL CARS2 CCND3 LINC01934 HNRNPUL1 TNRC6B UMAD1 EFNA5 RAP2A SSSCA1 AUTS2 SYNJ2 GNG2 LINC00598 PLXNC1 PIK3R5 CST7 IGF1R CIC PAM NBN CXXC5 C1ORF35\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CD247 ARHGAP26 CELF2 FOXP1 IKZF1 HIVEP3 PNKP PREX1 PRKCH KLF13 ANKRD44 FYN CIC PIP4K2A CDKN1B NEAT1 RAD51B GPR68 LINC00861 DNM2 ITPKB AC010894.3 ELMSAN1 MTSS1 STK10 CROCC SCML4 JAK1 NFATC2 CMIP ITGAE SEMA4D TET3 TRA2B TOX2 GNLY ARID1B ANKMY1 TRAF3IP3 MIR3142HG RAPGEF1 ERCC1 IQSEC1 RASA3 DGKD TTC33 NR4A2 ZBTB16 FLNA NCALD ETFB MBP ZNF672 BICRAL SIN3A LINC02384 CHST11 SLC15A4 IFNG-AS1 FNDC3B DRAIC PPP2R2B UTRN AL390957.1 ZFP36 CDC42SE2 PXN DNPEP SMAD3 DGLUCY MSN STAT4 PTK2B EVL CD53 AL133523.1 RPTOR AC012560.1 ANKRD11 COQ8A RUNX1 TBCCD1 AC117394.2 FNBP1 RIN3 VAV3 MTMR12 CXORF40B PATL2 ARL4C DUS2 ATP2B4 MAD1L1 GNAI2 ABHD15-AS1 PRDM2 AUTS2 MKLN1 AL590640.1 PRKCQ\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SGMS1 MAGT1 MRPL33 CCNYL1 CYTIP C1GALT1 PIK3AP1 AOAH FAM129A AC009486.1 CREB3L2 SLC25A26 AL512380.2 PITRM1 COP1 ADI1 NFXL1 ZC3H4 CELF2 WDR78 CHEK2 PIP4K2A SPIDR LINC02356 TG GRAP2 EDEM3 PRR14L USF3 AL359736.1 LPP ATXN2 ZNF33B OTUD6B-AS1 PATL2 GLG1 MACF1 LINC01353 ITGB1 NUDT5 PRKCH ERN1 TUBA1C AC068896.1 VIT NLK ADCY7 PRR5L RBM4B NDUFV2 TNRC6B CAMK1D ADAM12 SCML4 ZNF33A KIF21B LUCAT1 PEMT AL023755.1 OASL NRBF2 ACP6 RHOH DOCK10 HNRNPL AC008764.1 TOP2B CCNG2 ZBTB16 PDK3 GALC TMED7-TICAM2 ATP6AP1 AL162231.2 NCR3LG1 ATG4C PNKD ANKRD11 IFT27 SERPINE2 GADD45A KLF12 PELI1 TBXA2R AC010636.2 NFX1 AC008758.5 ZNF107 PSPH DCAKD PARP11 MIR3681HG PRKCQ LMF2 CCDC69 HAX1 MAP3K19 PRMT6 CHD7 TTC33\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CELF2 ARHGAP26 PIP4K2A AUTS2 ARSG TSPOAP1 NFATC2 LINC01934 FSIP1 IKZF1 TBC1D5 LINC00598 GAS7 BCL2 CCND3 RUNX1 ATXN7L1 PATL2 ANKMY1 GRK2 PREX1 LINC01126 AL359736.1 FYN IRF2 IQGAP2 HDAC4 RUNX3 ZDHHC14 BBC3 TGFBR2 ITPKB RORA-AS1 XRCC1 ACOXL ATP2B4 EPC2 ST3GAL1 PLEK DNAJB12 TRERF1 ICA1 AP003031.2 PPP6R1 RAB37 CD247 ARF4 STIM2 CRADD MARK2 PITPNC1 P2RY8 AC009486.1 CDC42SE2 KLRD1 ATG5 FAM13A SMAD7 WDR82 RIN3 ITGB2 BCL2L1 PPP2R5A ANKRD44 FAM49B GNLY DERL2 SFMBT2 CHST11 ZBTB16 CD300A OPA3 NCALD AC016831.7 GALNT2 FYB1 HMGB1 SEPT9 PPP3CA EPS15L1 PTPRC AKT1 POLM ITGAE ZNF558 CCDC9 CARHSP1 PCAT1 FNDC3A FOSL2 TSC22D1 EPHA4 BORCS5 TMEM192 HNRNPA2B1 PTPRJ ILVBL ARID1B SLC38A1 MAN1A1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LPP MAML3 PITPNC1 TNRC6B ARHGEF3 GALNT2 BACH2 AC010894.3 FYN DRAIC PREX1 GATAD2A CD247 ITGB2 PIP4K2A NCK2 AC068896.1 CHST11 RUNX1 FOXN3 XYLT1 CCND3 RAD51B STIM2 RIN3 GFOD1 TSPOAP1 CELF2 MBNL1 CBLB PDE4D ELMO1 KLF13 P2RY8 LYST FRMD4B AC008105.3 CXXC5 PRKCH CORO1A FOXP1 SPIDR IQSEC1 ASAP1 MBP CMIP STIM1 HDAC4 ATP2B4 ANKRD44 NOL4L TSPAN14 ITPKB AUTS2 AC009226.1 CDC14A PATL2 HIVEP2 DENND3 CDK17 RNF125 RGCC ARMH4 SEMA4D JARID2 GRK6 AL356234.2 GSE1 SORL1 CCDC102A DLEU2 GPR68 SUCLG2 ARID5B ID2-AS1 RIPOR2 FLNA ELMSAN1 POC1B TMEM135 NEMP1 CASP9 TSC22D1 CARS2 FYB1 ARHGAP10 IRAK2 PIK3AP1 HECW2 RPS6KA2 AKAP13 COA1 TBXAS1 MAPRE2 SEPT9 SFMBT2 TG CDK13 PPP1R16B PLCB1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LYST CD247 AL357060.1 ARHGAP26 ARSG ZBTB2 GAS5-AS1 ARHGAP19-SLIT1 AKAP13 AP1S3 MTO1 PPP2R2B IMP4 FAM76B IL1RAP AOAH MYO1F AL390066.1 MARS FBXO16 STT3B PRR5L AC068724.3 SLIT3 TGFBR3 RNF38 SETBP1 XRN1 GTF3C5 RALGDS KLF9 NADK2 MAP3K3 NCOA2 ARRDC3 MRPS27 RORA-AS1 CDYL2 SVIL TYK2 LINC00578 DAAM1 CENPT MED11 STX16 BAZ1A SARAF AL136961.1 KIFC1 FAM107B SP4 LUZP1 LINC01135 AL354696.2 SMAD3 TOMM40L GRK5 PIK3R4 CHPT1 OBSCN ITGB2 SMARCA2 CNOT6L CUL3 ATOX1 MMAB LEPROTL1 NAAA RPS6KC1 CPVL BBIP1 SEC24C RHOH WDSUB1 PDZK1 ZDHHC14 GSK3B KIF21A CCDC38 ST3GAL5 ST8SIA1 AL139807.1 SKI CD74 LPIN1 BCORL1 THUMPD3-AS1 TNIP1 MBOAT7 MKKS SOD2 UBAC2 EVI5L AC097359.3 SPACA6 MEX3C FAM13B SELENOF SRP9 SS18\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 PRKCH APBA2 AKAP13 RUNX1 PRKAG2 ATXN1 SIN3A CCDC88C LPIN2 MSI2 RIPOR2 CDKN1B FAM19A2 CD247 RHOF AC009126.1 FYN MAML3 TOGARAM2 PDE4D HIVEP2 CROCC IKZF3 ZBTB16 KLF13 TTC39C MNT RASSF3 GSK3B DNMT3A SH3KBP1 ITPR1 STIM2 DAZAP2 MAML2 CHST11 SNRK PDE4B ELK3 SSSCA1 PRCP LUC7L2 SEMA4D SSBP4 CERS6 SH2D3C DENND4A DUS2 LINC01588 JARID2 DUSP22 CRIP1 TMEM189-UBE2V1 IL2RB PIP4K2A STIM1 TSPOAP1 TGFBR2 ZEB2 STAT4 KLHL6 LYST TIAM1 ELF1 FAM107B AGPAT4 IFRD1 ITPKB CYTH1 GRK6 STK10 UBAC2 DOCK5 BCL2L2-PABPN1 ERCC1 FNDC3B TBC1D2B FAM102B KAT6B BRF1 CELF2 CDYL FOXP1 RPS6KA2 ZMIZ1 PBX1 PREX1 PTK2B BCL3 IKZF1 RNF125 MTMR12 EIF2AK3 HLA-DMA KIF2A PJA2 SLC2A1 AP001781.2 CD300A\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 FYN PRKCH CELF2 TSPOAP1 HIVEP3 ARHGAP26 RUNX1 UTRN UBAC2 CD82 ARHGAP25 RIN3 NFATC2 CDH23 ITPR1 CD247 IKZF1 MIR155HG ATG5 ST3GAL1 AC008105.3 ABTB2 SEPT9 FOXN3 AKAP13 BACH2 NCK2 TCF7 AKNA INPP4A ARID1B PVT1 AUTS2 DOCK10 ASAP1 NOL4L AC068896.1 CDK6 PATL2 LPP PTK2B TRERF1 ELMO1 TIAM2 PLCL2 TTC39C AC016831.7 CHST11 MBNL1 GRK5 ASTL GATAD2A STK10 TBC1D5 ARHGAP31 MIR3681HG DNMT3A ATP2B4 HIVEP2 NCOR2 PIP4K2A ELF1 CARS2 TG CBLB SYTL3 ATXN1 ARAP1 PTMA JARID2 TMEM123 FAM49B EHD1 ELL AL138720.1 MAML3 ETV6 SEMA4D GFOD1 BCL2 AC008667.1 MBP MTO1 NEMP1 ECE1 IQGAP2 HNRNPUL2-BSCL2 RFTN1 LINC01135 IKZF3 ACOXL TRAJ28 P2RY8 SNTB1 AL359736.1 PITPNC1 GSE1 PRKAG2 GALNT2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: KIAA1671 AC068896.1 HOOK2 CCDC88C PRKCH PITPNC1 FOXP1 PNKP IQSEC1 SEPT9 KLF13 CELF2 NFATC2 MIR3681HG MYH9 ADAMTSL4 RPS6KA2 STK10 DNM2 ARID5B ERCC1 HIVEP3 ABHD15-AS1 LINC00861 AC008105.3 PPM1B LINC01588 RGS9 FBRS AOAH KLF10 PATL2 AUTS2 CHST11 PIP4K2A GNGT2 CCND3 MSI2 MACF1 RALGDS EMC9 AMN1 PLCL2 JARID2 ANP32A AKAP13 ZC3H4 MYO1F FAM117A AL136018.1 RAC2 SLC2A1 TMEM143 CD247 SPIDR PTCH1 PCNX1 NR6A1 FHAD1 ALDH1A2 UBAC2 DOCK5 ARHGAP26 C1ORF112 RUNX1 ICAM2 PARP11 TMC6 SBNO2 SLFN12L GFOD1 DYRK1A AC079313.2 ETS1 PREX1 ADAM10 AC010487.3 PTMA RAPGEF1 FOXN3 TNFAIP8 SMAD3 KANSL1 P2RY8 ARHGEF2 IDH1 LYN C11ORF80 SORL1 AL139246.5 AL669918.1 ZSWIM5 CCT8 SH3GL1 NEAT1 FKBP5 ZNF213-AS1 FAM49B JAK1 SHC1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH TG ZEB2 BCL2 FOXN3 AKAP13 EVL ATXN1 RIN3 ITGAE RUNX1 UMAD1 GNG2 BACH2 HIVEP3 FAM107B DRAIC FYN TSPOAP1 LINC01588 RASA3 ZFP36L1 LPP ST8SIA4 FAM49B CD96 FOXP1 AC068896.1 ALDH1A2 RASSF5 KLF13 ITPKB ZBTB16 ARHGAP26 PIP4K2A GPR68 MGAT5 RAB27A NFATC2 ARMH4 ANKRD11 HDAC4 SLC2A1 INPP5D BCOR CELF2 AUTS2 MBNL1 SEMA4D NEAT1 IGF1R ITPR1 GFOD1 UBAC2 ZFYVE28 LINC01004 RAP1A IKZF2 PITPNC1 PTK2B GRK5 CYTIP PATL2 MIR3681HG SYTL3 MAP3K5 RREB1 AL390957.1 RASSF3 DGKD MBP RORA-AS1 ELMO1 HNRNPUL1 ARID5B IKZF1 CBX5 SMAD3 PRR5L ELL ZNF365 GLIPR2 CDK6 STK10 POLR1A MIR29B2CHG SIN3A SH3BP5 TTC33 UPP1 FKBP3 AC016831.7 PRKAR1B MAP3K12 CAP1 TSC22D1 PAG1 TGFBR2 LINC01126 MYO9B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HIVEP3 ARHGAP26 PPP2R5C CD247 SMG6 RUNX1 ITGAE DRAIC FAM117A TSPOAP1 TGFBR2 PREX1 NFATC2 FYN PITPNM2 DNAJB12 IKZF3 PRKCH TBC1D5 RAPGEF1 LINC01588 STAT4 TCF7 FKBP5 MNT PTCH1 ERCC1 SKI P2RY8 RBPJ IKZF1 BICDL1 ADGRE5 PRR5L TGFB1 ABHD15-AS1 RALGDS KIAA1671 AAK1 PITPNC1 PLCG2 ANKRD11 UBAC2 NCOR2 LPAR5 RFTN1 ZEB2 PCED1B AC016831.7 PRKCQ PNKP TBL1XR1 DNM2 ZBTB4 ST3GAL1 RUNX3 SHISAL2A MBOAT7 MBP AC009126.1 STAT6 LCORL CBLB YJU2 ANO10 CCDC9 DNAH2 KCTD2 PPP1R16B EPS15L1 DLEU2 KLF6 IL2RB CUBN HCG17 ZBTB16 AKAP13 TG AL139807.1 RASA3 LIPC LIPA CASP8 ARSG ATXN1 AHNAK IQSEC1 CELF2 AL390957.1 SLC25A42 ZFP36 C15ORF53 NHSL2 IQCN IL16 ITPK1 STIP1 DLG4 AC020911.2 CCND3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 FYN SEMA4D ANKRD44 PRKCH CBLB ATXN1 AC068896.1 RAPGEF1 ST3GAL1 HIVEP2 AKAP13 MBP NFATC2 PITPNC1 MAML2 AL390957.1 LINC01588 SMG6 CCDC88C HOOK2 AC010894.3 ZEB2 SEPT9 UBAC2 HIVEP3 BCL11B ARHGAP26 KLF13 TSPOAP1 SORL1 CAMK2D PIK3R5 IKZF1 IQSEC1 FAM107B AC016831.7 IQGAP2 LPP CELF2 ACOXL RAD51B GNG2 ZBTB16 RALGDS PTPRC P2RY8 TRERF1 ARID1B FOXP1 AC008764.1 PLXNA4 GRK5 STK10 ATG5 PRKCQ CD247 FYB1 TNFAIP8 ABHD15-AS1 ETS1 PRR5L CHST11 UBE2D3 MBNL1 ZNRF2 RERE KLRD1 VAV3 CEP85L FAM69A CDC14A HDAC4 SESN1 LINC01934 RIPOR2 TRAJ28 GATAD2A TECR PPP2R5C ARID5B JARID2 STAT4 MGAT4A PIP4K2A HECW2 AUTS2 OSBPL3 ELMO1 STK17B ZFP36L1 ARHGEF3 IKZF3 STIM1 AL035530.2 MYH9 SVIL GAS7 SMARCA2 EPS15L1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TCF25 RAN ZSCAN5A MAP4 LIG1 DAP TRNAU1AP GNB1 PCSK4 CAPN10 ZNF217 CAMTA1 AC135178.2 CCDC151 INPP5A MPHOSPH9 ARHGEF19 MBD4 RECQL IQGAP1 SDR42E2 TAPBP TBC1D10B LINC01126 PITRM1 KLF6 SMAD2 FAM129A AC027644.4 FBXL19 STIM1 NRDC EEF1AKMT3 SLC2A3 TAF15 MBOAT7 INTS11 MEX3C OSTC AC009630.1 MAP2K3 COMMD6 BAIAP3 ADAP1 NANS CHKA PCM1 DCLRE1C ILF3 AC010336.1 FLYWCH2 PDE4A TARSL2 NAP1L4 PIM1 MOB3A FIBP SYS1 CARS2 AL590666.2 KCNJ5 C12ORF75 IL12RB1 RPL36 ADGRE3 AC034102.4 PODXL2 C9ORF16 STT3B IFT27 AAMP GCLC SUCO CACTIN FAM118A NHEJ1 CGN POU2F2 BRF1 NRBP1 SYTL2 EHD1 KLF16 EIF3D KIAA0930 ARID4B LRTOMT TMED9 PLCD1 C8ORF58 SMPD1 PLA2G15 OGDH PIAS4 MNT AL360227.1 FBXO5 AC007881.2 ETV4 TNFRSF14-AS1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 FYN UBAC2 ITPKB RUNX1 PRKCH CCDC88C GSE1 MAML2 MNT DNAH2 IKZF1 LIPA ELMO1 HDAC4 IKZF3 ARHGAP25 CELF2 TSPOAP1 CYTIP CHST11 AC068896.1 FAM117A RERE ARHGAP26 HOOK2 KLF13 LINC01004 NEAT1 PRR5L HIVEP2 OSBPL3 CDC42SE2 ARID5B AKNA BACH2 CD247 C1ORF112 MIR3681HG SERINC5 SEPT9 RAPGEF1 TRIM8 AAK1 MSN CSGALNACT1 TGFBR2 ANKRD44 MBNL1 VAMP1 AC009126.1 PREX1 HIVEP3 HNRNPUL1 RFX3 IGF2R AKAP13 FAM107B CAMK1D SESN1 BHLHE40-AS1 UMAD1 LIPE-AS1 PTK2B RUNX3 TSC22D3 RAD51B INPP5A CBLB LINC01588 SYTL2 SERTAD2 FNDC3B BCL2 NFATC2 TG GPR137 MXI1 STK10 GRK5 LPXN FOXN3 PRKAR1B DOCK10 MYBL1 NEMP1 DRAIC SCML4 AL035530.2 XKR6 GSK3A KAT6B MALAT1 MACF1 ZBTB16 SIN3A RIPOR2 JADE1 BICRAL VMP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 ARHGAP26 SNTB1 FOXP1 AL035530.2 CCDC88C UTRN KLF13 PITPNC1 CMIP TSPOAP1 PLCL2 TSPAN14 ZEB2 LIPA PRKCH BCL2 AC068896.1 STK40 HDAC4 STK10 PREX1 AKAP13 CELF2 LFNG CHST11 CCDC12 SEC24C ELL AC016831.7 PLEKHF1 NEAT1 RAPGEF1 PTPRC CROCC FYN LINC00649 TLE4 CAMK2D LPP GRK5 TRAPPC3 ICA1 RASA3 FAM49B ADAP1 ETS1 MYO18A HECW2 BHLHE40-AS1 RIPK1 FAM117A AKNA PPP3CA SCAF11 CD247 CDC42SE2 APBB1IP RAP1GAP2 ARHGAP25 KHSRP ITPKB LRMP DDX60L AGTPBP1 ZDHHC14 THAP4 SLC2A1 ATXN1 SH2D3C MSRA ZNF365 RIN3 ZNF516 MAML2 GPR68 LYN RASSF3 ASAP1 TMEM65 ZNF790 BCL6 SYNGR1 FAM107B PTK2B BCL11B TRABD2A ADGRG5 THADA SMAD3 JARID2 UBE2D3 SERTAD2 RERE MSI2 AL390957.1 VAV3 ICAM2 PAG1 SYK\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTEN VAV3 ELMO1 KLF7 IKZF1 ARMH4 EPS15 CNOT3 PITPNC1 SLC2A1 PLCXD2 GPR108 TG FAM69A HIVEP3 KLF6 CROCC SETDB2 CELF2 CCDC88C LRRFIP1 CHCHD4 CLEC2B JAZF1 APBA2 AC024592.3 FAM49A MYO1D ARMC9 CCDC151 ZBTB5 RERE PGRMC2 HIST1H4H SPIDR SEC14L1 SYNE1 DLG5 SNX14 AC018647.1 DTWD2 PPM1B TUBA1C ITGAE EHBP1 SH3BP5 ANKMY1 ABHD15-AS1 TOR1AIP2 FAM107B PTCH1 PTMA XPO1 AC022706.1 PPP1CA HS6ST1 DHRS3 EML6 MRPL24 AHNAK DRAIC LRRC1 DARS-AS1 RCSD1 POU2F1 RFFL GAS7 NFE2L3 KLF1 HNRNPA2B1 AC093423.3 TSPAN14 ST8SIA4 IQSEC1 SLC26A2 NR1D1 ANKRD44 RAB27A PSPH C8ORF59 LYN AUTS2 PIM3 IFNG-AS1 NUB1 RPL10 FOXN3 CCDC12 RASSF5 ZBTB38 ARHGAP10 AOAH JAK1 CD247 FNDC3B ELOVL5 LINC00299 AL359922.1 MPRIP SRSF7\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PITPNC1 RUNX1 ITPKB MBP KLF13 LINC01588 PTPRC SMAD3 CCDC88C RIN3 CELF2 XYLT1 FAM107B ZFP36L1 ITK LINC00598 JARID2 AKNA ARAP1 ITPR1 PRKCH P2RY8 LPP PIP4K2A APBA2 AL359736.1 FYN AC068896.1 CARS2 ARMC2 MIR29B2CHG ITPK1 BCL2 AXIN1 KLF9 LINC01126 ARHGAP26 MAN1A1 PIK3R1 EPC1 TTC33 GATAD2A STIM2 PLXNA4 IKZF1 INPP4A JMJD1C LINC02320 POLR1A NFATC2 AL390957.1 MAP2K3 AC010894.3 TOR1AIP2 CD247 STK10 MTSS1 SERTAD2 AC087500.1 RAD51B CYTH3 TRERF1 PLCG2 ARSG RUNX3 AKAP13 AC026202.2 DSE BHLHE40-AS1 TSPOAP1 KLF12 PVT1 SMG6 PLXNC1 ARHGEF3 RGS3 ERCC1 HIVEP3 SPON2 ARHGAP15 GAS7 FAM49B ABHD2 SEPT9 FAM129A HDAC4 PRKAG2 SORL1 PTK2B RPS6KA2 PXYLP1 AC010542.3 DRAIC ZNRF2 AC051619.4 FYB1 AC009226.1 CNNM2 OSBPL3 UBP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CEMIP2 AC008105.3 HCG27 PREX1 FOXN3 ARHGAP26 MAPKAPK2 AC004551.1 RARA MACF1 PPP3CA AFF1 SEPT6 FAM49B AL139807.1 C4ORF51 AC148476.1 PPCDC CELF2 UEVLD ANP32A PRKCQ DLG4 GSE1 WASF2 TCF20 RHOBTB3 ZDHHC14 XKR6 PIK3CD MSL2 NUMB ZZEF1 IQGAP2 PLCB3 ACIN1 AAAS CARS2 TPP2 FBRS AC024909.1 NDUFV2 KANSL1 ATP8A1 WWC3 HNRNPU FHIT PNKP ANKRD44 LINC01934 UBE2D3 TBC1D2B TOM1 PER1 TSHZ3 NMRAL1 GLTP ABCC1 RORA-AS1 SP3 BLM GTPBP2 FOXP1 KDM4C ST3GAL1 DDX60L NFE2L1 CTSZ RTN4R NT5C3B AC004596.1 RAD52 AMER1 ZBTB4 AD000671.3 AIG1 CMSS1 POLR3A AP5B1 STPG1 ZNF837 C6ORF99 ATP5MC2 TICAM1 CD14 AC073342.1 KIAA1549 PSMG4 SGMS1 SH2D3C GLUD1 SAMHD1 ANKMY2 AC015849.5 AL157400.3 CIC RABEP2 FLI1 RRM2B TBC1D8\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FSIP1 SEPT9 AC008764.1 UBAC2 TSPOAP1 PRKCH RALGDS RAP2A PLXNA4 UTRN STIP1 SESN1 SLC12A6 TFEB CD247 ZFYVE28 PMEL CTSC RASGEF1B MBD6 FNDC3B AC068724.3 MYCBP2 P2RY8 CCDC12 AC020916.1 VCL SH2D3C RRAS RB1 GATAD2A ABCB9 PREX1 RAP1GAP2 LPCAT1 LSP1 INSR STK10 RAD51B FKBP5 DUSP10 CDC14A AC022182.1 FAM222B RAB11B-AS1 RPS6KA2 PRR5L PIP4K2A SEMA4D CCDC88C PDE4D B9D1 SPTBN1 FAM43A CLCN3 TBC1D14 RASSF3 FAM49B TSKS STK4 DRAIC EGR1 RUNX3 LINC00578 ZFR2 GRK2 FAM117A U2AF2 RUNX1 JAK1 FYN TBC1D1 SOS1 EHD1 THUMPD3-AS1 C20ORF27 DNM3 ATP6V0A4 SETD2 AL132671.2 RNF44 ATP10A HLA-DMA AC015819.1 PRRC2B SETD3 DUSP3 RAP1A GNG7 MYH9 AC117394.2 COQ10B STAT4 CXORF40B RFFL AC048341.1 AC013270.1 ABHD15-AS1 AP005329.2 DDAH2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CD247 ARHGAP26 IKZF1 AKAP13 IQGAP2 PPP2R5C HDAC4 RUNX1 FAM49B SPIDR JARID2 SEMA4D PITPNC1 NEAT1 AKNA LFNG FOXN3 CMIP FYN FNDC3B ATG5 TECR SEPT9 LINC01588 LINC01126 XYLT1 STIM2 AC068896.1 CYTH1 CCDC88C PNKP CCND3 RIPOR2 AL359736.1 EVL STK39 ANKRD11 PIP4K2A RORA TG MIDN PTK2B ARID1B MSL2 STK10 UBAC2 LBH GFOD1 ABLIM1 FSIP1 CHST11 SMAD3 ZBTB16 DRAIC KLF13 KIF2A EFNA5 ETS1 AC016831.7 TGFBR3 BHLHE40-AS1 MBP NR1H2 JADE2 PLCG2 AC009126.1 BCL11B HOOK2 LPP GNAI2 AL691403.1 RAP1GAP2 ZSCAN31 NBN TRIM8 ZNF367 RIN3 XXYLT1 PCAT1 VPS13D LINC00299 PDE4D MBNL1 DNM3 ANKRD44 PREX1 LRCH1 ARRDC3 SERTAD2 GSE1 HOMEZ RUNX3 GPR68 AC008014.1 BCL9L AL390957.1 ABHD15-AS1 RAP1A ICA1 DGKD\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 GATAD2A PRKCH ST3GAL1 SEMA4D ARHGEF3 PIP4K2A SEPT9 CCDC12 DRAIC PIK3R1 MBP IL2RB KLF13 AC068896.1 PPP1R16B CD247 CMIP RASA3 TBC1D5 JARID2 PDE4D FYN MIR3681HG CDK6 IKZF3 TNFAIP8 NFATC2 RGS3 APBA2 CHST11 PRKAG2 AUTS2 DGKD HDAC4 POLR1A FYB1 BCL9L TTC33 XYLT1 FAM49B HIVEP3 TLE4 MGAT4A ETS1 ST8SIA4 AL359736.1 PRKCB ERCC1 RAPGEF1 SIN3A AKNA CCDC88C AL390957.1 STK10 ZFP36L1 NOL4L P2RY8 TGFBR3 ABHD15-AS1 LINC00299 AC022075.1 RUNX3 PATL2 ANKRD11 ATG5 AC008014.1 KLHL21 UMAD1 TBC1D1 LMTK2 IQGAP2 LIPA ZFYVE28 QKI TXNRD1 IKZF1 RIPOR2 SLC38A1 ZEB2 FOXP1 ITPKB ELL AAK1 PTK2B PEX14 SH3KBP1 FSIP1 AC022916.1 MSI2 ELF2 SORL1 IQSEC1 MBNL1 SFMBT2 SLC25A26 LPP OTULIN AC010894.3 CDC42SE2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRRC2B RUNX1 SORL1 C19ORF54 PPP2R5A ATG5 GFOD1 ARHGAP15 CEMIP2 SCML4 ELMO1 AKNA AC010323.1 LRCH1 MRPS27 MAP3K3 ARF4 LIMD1 PPP1CA TRIM24 TMEM269 FYB1 MNT ANKRD44 AL138720.1 CMTM7 VCP BCR TREML2 DNAJB12 SLC25A26 KDM4C CCDC47 HNRNPUL2-BSCL2 MCOLN2 SCYL3 LIX1-AS1 CIC MYLPF IGF1R PRTFDC1 AC009126.1 ERCC1 TRIP12 EMC3 THOC7 EIF4E1B CCNL1 SPAG7 ADRM1 ADAM10 SAP130 PTEN TAF6 QRICH1 TCF25 BCL2L1 FNDC3B NOD2 ATG16L1 AC092718.8 STK24 THAP1 APOLD1 LYSMD2 SYNJ2 HDAC4 SRF GDF5 HIST1H2BH SREBF2 POLR2J3 UBE2D3 ZNF367 PNKP PPP6R1 TOM1L2 GON4L NEPRO MATN1 PARVG PPP3CC XYLT1 EBPL UMAD1 UBXN4 GMFG ACTN4 IQCD NXF1 ESR2 SMG6 MMS19 KATNB1 RPS12 TAF10 TRAPPC6B CTBP1 MAN1A1 AC018647.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH RNF167 LINC01126 ITGAE ATOX1 C8ORF37-AS1 UMAD1 HOOK2 CXXC5 SMG6 HDAC4 PIP4K2A GRK5 AC068896.1 STK10 LMNB1-DT GNG2 LINC00649 CDC42SE2 AC008691.1 MYBL1 MAPRE2 TLE4 SEC16A TBXAS1 EFNA5 ARHGAP26 MDFIC XYLT1 AL139807.1 AC008124.1 OARD1 U2AF2 RUNX3 PIK3R5 RORA-AS1 B4GALT1 AC120193.1 FBXW11 RBMS1 TTC33 DYRK1A PLXNA4 MLLT3 SLC3A2 SH3PXD2A ETS1 NBN TSPOAP1 BICRAL ANKRD44 MBP ITK ZBTB2 LINC01588 DLEU2 VAV3 HIPK2 PPP1CA BAZ2A FAM107B FOXP1 LPP TOGARAM2 SLC25A26 BHLHE40-AS1 ATP5PF PCED1B FYN NR6A1 AL162231.2 KLHDC3 RHOH ZBTB20 MAP3K12 PLCB1 NDUFAF6 HLA-DMA LCP2 SH3BP5 TRAF1 RIN3 PATL2 BATF FBRS CSK LINC01004 JMJD1C GSK3B NFKBIA MPHOSPH8 IMMT WRNIP1 ZNF699 TGFBR3 CCDC88C ZFP36L1 AC008667.1 ATG7 DNMT3A\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH ARHGAP26 MBP CD247 CELF2 AC068896.1 AL359736.1 BCL6 RUNX1 AC015849.5 INPP4A JARID2 SEMA4D ATG5 NEAT1 LINC00299 NCOA7 LINC01934 APBA2 ADGRG5 ARHGEF1 CROCC STAT4 NMRAL1 ASB2 RUNX3 RASSF5 ATOX1 NEMP1 ABHD15-AS1 RAPGEF1 TGFBR3 ZBTB16 MAP3K3 ITK ATXN7L1 DYRK1A NFATC2 FYN RIN3 CMIP RASSF3 BCL2 ZFP36L1 ITPR1 NRL LINC01135 EPC1 CDC14A PLEK PITPNC1 FAM107B IFNG-AS1 BACH1 GATAD2A VAV3 RETREG2 WDR74 PRKCB HNRNPUL1 PTPRE FBRS RB1 CDKN1B GTDC1 SIN3A AKAP13 LCP1 SEC31A CBLB AC016831.7 GRK5 KANSL1 NEK7 AGTPBP1 ACOXL BCOR HIPK2 PLCB1 STAG2 RGS3 EPHA4 UMAD1 WDFY2 GNS PDE4D AC008403.1 ANKRD44 DNAH2 MBNL1 LINC02240 CDC42SE2 HNRNPUL2-BSCL2 DOCK5 ARID5B TRERF1 CARS2 GPBP1 ZNF384 PRPF40A\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXN3 PRKCH FYB1 LINC01588 RAD51B ARMH4 CXXC5 TSPOAP1 LCP2 RUNX3 HDAC4 PLEKHA2 HOOK2 CD55 LPP CELF2 UBAC2 FOXP1 PLCG2 FNDC3B KSR1 NLRC5 RIN3 ITPR1 TRAF1 MAML3 ANKRD11 PIK3C2B ECE1 DLEU2 TRABD2A POU2AF1 TG PPP3CA MRPS27 TTC33 SEPT9 EPHA4 ARHGAP26 PTK2B MIR3681HG ANKRD44 TRERF1 AL390957.1 CHST11 TBC1D5 PLCD1 PITPNC1 RUNX1 ITGB2 CROCC NSMCE1 XYLT1 C1ORF112 IQSEC1 NFKB1 CCDC88C JOSD1 LINC01004 BHLHE40-AS1 MBP PTPRJ AC016831.7 PRKCE PIK3CD LYN ZBTB20 ITGAE SPAG1 ELMO1 NFATC2 AGPAT4 DAP RARG THUMPD3-AS1 TNFAIP8 ZSWIM6 FAM49A ACTN4 AL160408.2 L2HGDH ELMSAN1 PRMT1 MXI1 LINC01934 ELF2 LARP1B MACF1 HSPD1 LYST MCF2L2 BCAR3 UBASH3B FASLG ZMIZ2 CAMTA1 ZMIZ1 MIAT EHD1 SP4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 CDC14A CDH23 ACSL1 TRABD2A ITGAE MBP SCML4 AL136985.3 MIA2 STAG2 UBAC2 VMP1 NHSL2 MCM3 SYNJ2 MIS18BP1 CEMIP2 NAPA RASSF5 AC243829.1 RAP1GAP2 KLF9 TLE1 AL669918.1 PRDM2 ETS1 TCF25 GAS7 TOR3A TMSB4X AL139383.1 ATP13A1 SLFN12 BHLHE40-AS1 HNRNPL CMIP PNKP RUNX3 SCUBE1 SH3KBP1 SLC37A1 CD247 ARHGAP26 PATL2 PRKCQ RALGDS LINC02288 PCIF1 ATXN1 BCR KIAA0319L ADARB2 AK2 ARHGAP10 PLCB1 MGAT5 FOXP1 TGFBR3 LRRFIP1 CASK TMEM189-UBE2V1 PLEKHA1 AL034549.1 ITPKB GRIK4 GNAT2 PHIP ITGB1 MDC1 NOM1 PROCA1 MRPS36 CHST12 ZNF569 CD44 PIK3CD ZNF365 CMSS1 PIM1 ATAD3A SETDB2 SYTL3 OXNAD1 MMADHC CD226 RMDN3 ARHGEF3 FGGY HEG1 SYTL2 CFLAR DPYD MTFR1 TBC1D19 CD69 FBXL19 WDPCP ACTB DOCK5\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 RUNX1 IKZF1 CELF2 SEMA4D AUTS2 ANKRD11 MAML2 AC068896.1 IQCN PREX1 LPP PLCL2 IKZF3 CCND3 AKAP13 PPP1R16B PCED1B FOXP1 PATL2 PRKCH NCOR2 CDK6 FNDC3B FAM117A ASAP1 HEG1 ZBTB16 TRANK1 MIDN FOXN3 TET3 TNIP1 PRKCQ FYN MIR3681HG KAT6B MBP HDAC4 TBXAS1 ADCY7 IQGAP2 ACOXL RAD51B CAMTA1 KIF2A IFNG-AS1 CIC CXXC5 AL390957.1 ZFP36 PPP2R5C ZFP36L1 DDX6 ETS1 GATAD2A ATOX1 NKIRAS1 NFE2L3 PIP4K2A TNRC6B XRCC1 RAP1A CFLAR ZNF516 CHST11 HOOK2 CDC42SE2 ITPKB ANKMY1 RIN3 GFOD1 FAM69A XKR6 ARMH4 KIF13A ATXN1 CMIP FOXO6 LINC02416 BICDL1 KHNYN TNFAIP8 RARG AC009226.1 ID2-AS1 HIP1 BACH2 KLF6 LIPA SSSCA1 ZNRF3 RUNX3 DUSP10 MYH9 MIAT UBASH3B RERE ICA1 BIN1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCQ IQSEC1 PRKCH DRAIC PREX1 FOXP1 PLCB1 BACH2 UBAC2 CCDC88C MBP PRKAG2 AL390957.1 FYN ARSG RAD51B CRADD SKI LPP LINC01126 RAP1GAP2 GATAD2A ETS1 BHLHE40-AS1 PLCL2 MAML2 GLS ELMO1 ATXN7 LINC01588 GAS7 MAN1A1 MTSS1 AC068896.1 RIN3 PITPNC1 TSPOAP1 KLF13 ITK CD226 ACOXL SORL1 CNOT1 PIK3R1 TNFSF14 DTX1 GNLY RMND1 IFFO2 HIVEP2 PLXND1 DNM2 IKZF1 BCLAF1 CMIP ING3 FAM117A OGDH AL359736.1 SPIDR SLC39A10 AC009126.1 PLEKHG3 PLCG2 GTPBP6 ARHGAP26 MGA ERCC1 AKAP13 KAT6B CMTM7 CELSR1 CAPZB CCDC12 SEPT9 ARID1B MSI2 PIP4K2A SMIM2-AS1 DOCK10 MKLN1 TG OSBPL3 HDAC4 MAPK1 PCNX2 AL928654.3 ZEB2 IKZF2 LFNG RAC2 ITPKB GNG2 TGFBR3 NCOR2 VPS9D1 IRAK2 PPP2R5E LINC01135 FHAD1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHST11 RAD51B FYN SERTAD2 TSPOAP1 DRAIC AC016831.7 ERCC1 IQSEC1 UPP1 UMAD1 SORL1 ZNF131 ACTN4 AC068896.1 LPP ANKRD44 JAZF1 SFMBT2 TLE4 AKAP13 DOCK10 EPHA4 TET3 ITK SMG6 UBE2D3 LINC00861 POU2F2 EFNA5 PCF11 MSI2 SEPT9 TGFBR3 ARHGAP26 CHD4 BTBD9 GNLY FAM107B CELF2 ARHGEF3 CEP85L NOL4L APBA2 TBC1D5 AC008764.1 LINC01185 KIF2A FYB1 PRCP PLCB1 MAML2 IL2RB AC010894.3 FOXP1 LIPE-AS1 ATXN7L1 AC022126.1 PRKCA TXNRD1 PTK2 RAP1A DYRK1A GRK5 LEPROTL1 AC069368.1 RASA3 IL21R CBX7 KLF13 AGPAT1 MAP3K1 AKAP11 BCL2 FOXO3 HDAC4 AAK1 MGAT4A AC018647.1 AC008014.1 BBIP1 PRF1 SLC12A8 PTPRE RIN3 AC022075.1 ITPR1 CD44 AC006369.1 CXCR4 PTK2B FLYWCH2 AL035530.2 C1ORF112 ZBTB2 TPD52 OTUD5 PIGN PFKFB3 PSD4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MAML2 IKZF1 FOXP1 HDAC4 BCL9L TIAM1 STIM1 EMC9 UMAD1 RERE SEPT9 PTK2B SORL1 BCL11B EVL CD226 LEF1 TGFBR2 TBC1D5 SPTBN1 HOMEZ MAST4 RGS10 TRABD2A RHOH HDAC7 CD44 KLF12 FARS2 CDK6 SKI DNAJC1 SSH2 ZNF846 LINC01126 GSE1 DEAF1 MZF1-AS1 ARHGAP26 NUP210 PBXIP1 ACOXL NCOR2 STAT6 HADH MNT CCND3 YWHAZ C3ORF58 RUNX1 NDUFV2 NPAT PRKCH LTBP4 PAG1 ST3GAL1 DRG1 CMTM7 SFMBT2 PHF12 STIM2 HIVEP2 CARS2 TMSB4X CDC42SE2 LDLRAD4 RPTOR MAPRE2 KLF13 MBNL1 ASAP1 RBMS1 FOXN3 GNAQ CELF2 CCDC88C FHIT RAB26 NFE2L1 WRNIP1 RBL2 IRS1 ZNRF2 SREBF1 MDS2 EIF4A2 PVT1 DHTKD1 SUCO RASA2 ARSG AFAP1 AGPAT1 TSPAN14 RPS6KA2 HMSD HNRNPL HNRNPA2B1 IL7R MCRIP2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ETS1 RIPOR2 TSPOAP1 UBAC2 RASGEF1B PRKCH TIAM1 FYN ZNF846 IKZF1 PIP4K2A KLF12 BACH2 RAD51B FOXP1 STK4 PCGF5 RPTOR PDE4D CDC42SE2 AC008014.1 ATXN7L1 TNFAIP8 CAMK1D AKAP13 RASSF3 MNT ADAMTSL4 DNAH6 ITPKB ZFP36L1 HIVEP2 CDH23 CDC14A TNRC6B ACVR1 PECAM1 SEMA4D ITK PPP2R5C GRK5 ARMH4 AL691403.1 NOL4L P2RY8 SMAP2 PRDM2 CDKN1B CATSPERG SYNE2 LRRFIP1 SEPT11 ERO1B ETV6 MED12L PAQR8 ZNF609 EHD1 CD247 RHOH PRKCA AMPH CDCA3 FAM117A FAM173B WNK1 DNMT3A FLI1 TSC22D2 SOD2 TMEM143 TMEM245 CELF2 TSC22D1 TRABD2A TBCB MPP7 AC093010.2 PJA2 ZSWIM5 RPS6KA2 DIP2B GIMAP1-GIMAP5 MAP3K3 SESN1 TBC1D2B HMGCS1 SHQ1 MAD1L1 GSK3B PLCL2 TMA16 FARS2 SEPT9 TNK2 FYB1 CMTM7 AL445231.1 FBXW7 SINHCAF\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: INPP4B ARID1B RIPOR2 CYTIP BICRAL CSGALNACT1 NEAT1 ARHGAP15 LINC01934 LBH RERE STIM1 RCL1 STK40 UBAC2 NEK7 RASSF3 FYN SMAD7 LINC02029 MAN1C1 OPA3 CROCC CDK19 SP2 BCL2 ATP2B4 CASC11 KCNN3 NFATC2 ARHGDIB MIR29B2CHG SEPT9 SPTBN1 DAAM1 UXS1 TTI2 DENND2D PVT1 CREB3L2 SERTAD2 LINC02520 M6PR TAF1 AL392046.1 STK11IP OXCT1 OARD1 MEX3C UBALD1 KCNIP2 KLHL21 HDAC4 RPS6KA2 MLLT3 GBE1 TBCCD1 ATG2B ATAD2 POU2F1 UMAD1 METTL3 APPL2 TOX2 EPC2 AC022182.1 RAB11FIP4 RSBN1 PCSK5 RBL1 PDP1 ATXN7L1 SERINC5 AGPAT1 ARID5B NR4A2 EVL TMEM263 SLC25A38 ADD2 HIVEP2 MAP3K3 TMEM106C SYNJ2 MGAT4A CHD4 ST3GAL5 EMILIN2 ADAMTSL4 CD226 CCDC88C MTFR1 AC013270.1 SARAF AC084357.2 PTPRC ST6GALNAC3 GATAD2B SNX9 C1ORF112\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 UBAC2 ATXN1 TIAM1 PRKCH CYTIP IQGAP2 NCK2 SIN3A CD247 CCDC9 ARMH4 CCDC88C PTPRC ELMO1 RPS6KA2 KLF7 SERTAD2 UBC CUL3 INPP4B NRSN2-AS1 PDE4D FYN ST8SIA1 UXS1 RIPOR2 TRANK1 ZBTB20 ARID5B DOCK10 ACSF3 TPT1 GSK3B CEP97 CAST GPR68 CIC ST8SIA4 FAXDC2 CELF2 ETV6 ZNF250 EYA3 MTO1 ANP32A COMTD1 AC010894.3 UBXN11 CDC42SE2 STK10 BCL2 NLRC5 SYNE2 AKAP13 NR4A2 KCNIP2 FYB1 DTHD1 CCR7 RBMS1 ST3GAL1 TNIP1 ADAMTSL4 DRAIC CD44 WDR75 RPTOR RAB11FIP4 MANBA CEP170 HBS1L LDLRAD4 MAML2 SP100 MTRR ACIN1 HNRNPD FAM117B OTUD4 ABHD15-AS1 CASP4 ISG20 JADE1 ANXA6 ANKMY1 PRMT1 RNF216 AC016907.2 RARA MLF2 ZFP36 PHLDA1 TAB2 TMEM232 CACNA2D4 AC087239.1 ZNF77 AL034549.1 CPEB4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 NCK2 LIPA HOMEZ CROCC DENND2A AL136368.1 CD247 JADE2 CD226 BCL2 CTNNAL1 NMRK1 LPIN2 CCT8 DNPEP VPS4B MAPRE2 ELMO1 RNF216 HNRNPK CCNH TBL2 RNF38 AL139383.1 CAMK4 INPP4B C15ORF53 MBP IGF2R CDC42SE2 NECAP1 SLC22A5 SLC37A3 ACER2 ZFP41 STX17-AS1 UMAD1 SMARCA2 GFM2 IL7R AFG3L2 SP4 SLC45A4 AAK1 ST8SIA4 FAM107A PRR7 CEP152 CDK6 ELF1 TCF4 NDUFV2 IKZF1 C18ORF32 TMEM164 TMEM131L PFDN2 TOMM70 GAS5-AS1 AC092647.5 AL163195.3 GGCX DHRS1 ARRDC3 AUTS2 CNOT7 MIR3142HG MAD1L1 CAST AC107375.1 JADE1 DCAF4 MICU2 TAGLN2 ZNHIT6 FOXO1 SOD2 MXI1 GHITM RABGAP1L NAMPT UFSP2 RNASE4 VIRMA EGR1 TMEM232 LARS2 SLC39A6 PIP4P1 KIAA0895 AL049870.2 MKNK1 ANKRD44 STK24 PAX5 PTPRN2 GATAD2B UBTD2 TBC1D5\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HIVEP2 PTPRC RAD51B SEMA4D MAML2 TSPAN14 SERTAD2 IKZF1 LRRFIP1 LEF1 SPTBN1 AC016831.7 TNFAIP8 TTC33 MGAT5 RUNX1 ST3GAL1 CSGALNACT1 CASP8 PRKCH ETS1 INPP4A KLF7 PIP4K2A ITPR1 HDAC4 RNF216 TIAM1 AC034114.2 IRS1 ADAMTSL4 DDX5 MAD1L1 PVT1 TAB2 CLYBL MICAL2 AMPD3 ARHGEF3 UXS1 LYST PLCL1 INPP4B UTRN MYO1D FYB1 PIGC FYN TBC1D5 AL390957.1 CACUL1 SYTL2 LCP2 TNFAIP8L1 TMEM248 THEMIS ECE1 LPIN2 IMMP2L CDK19 NCK2 GATAD2A ABHD15-AS1 SP4 MACF1 UPP2 PFKFB3 MEF2D BICDL1 AUTS2 TMEM131L CMTM7 NR1D1 PHF12 UMAD1 PRKCQ TXNL1 ARF4 BCL2 NCOA2 MAN1A1 KLF9 TPR EHD1 CD44 AC002310.4 PNPLA8 TRAF3IP3 BACH2 CD48 KANSL1 EEF2KMT SLC16A10 ADD2 ZBTB20 FOXD2 FOXP1 IRF2 ARHGAP15 NKD1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ANKRD44 FOXP1 ITPKB LIPA BACH2 HIVEP2 BCL2 HDAC4 CSGALNACT1 ADAMTSL4 PDE4B EVL CIC NEAT1 GRK5 SUSD6 MACF1 LEF1 LPIN2 AC016907.2 TNFAIP8 IKZF1 FOXN2 ZNF837 PTPRC RMI2 ARID5B TIAM1 CDC42SE2 MYH9 AL162377.3 KDM2A GRK2 AC097713.1 CUBN SCYL3 FBXL19 FYB1 ETS1 C1ORF112 SELPLG ST3GAL1 RAB4B-EGLN2 HDAC7 AP000311.1 ESYT2 MBP NEK7 MARK4 PPP2R5C ARL4C UBAC2 RUNX1 NOSIP MAP4K4 ZC3HAV1 RERE NEDD9 HNRNPC MLLT3 LASP1 KLF12 LEPROTL1 AC116366.3 FBXO5 PATL2 FOXO1 MIDN DOCK10 RAB7A ID2-AS1 PABPC1 DOCK9 MXI1 STIM1 NBDY ZCCHC2 SDR42E2 SMAD3 FARSA NFE2L2 ZFP36L1 TRABD2A CCR7 HMGCS1 STAT1 RTN4 RAPGEF1 EGR1 TBC1D10A PLCD1 ADK RAD51B FYN SERINC5 GRAP2 PTPRJ MAD1L1 ARHGEF3 ZNF569\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 AC016831.7 IKZF1 TNFAIP8 DOCK9 ARID1B LINC01934 STAT1 DLG4 CD247 LINC00598 SERINC5 ITPKB FYN CDC42SE2 ETS1 KDM4B FKBP5 CIC AFAP1 KLF13 SEMA4D MARK2 SP1 MALT1 PATL2 NR4A2 PIP4K2A CYTIP BCL2 SEPT9 MAP4K4 BACH2 ELF1 FGD3 UST ANKRD11 PITPNM2 EVL RASSF3 MLLT3 PRKRIP1 ARHGAP15 RPRD2 ERN1 CLTA CAB39L CASP8 PRKCH CD226 DLEU2 CCDC9 TES PRKCQ ZC3HAV1 AL359736.1 RSPH14 RNF44 PPM1K ARSG LINC01126 BCLAF1 ATG5 ROCK1 AL390957.1 BCL11B TTC33 PIK3R1 WNK1 WNT7A INPP4A RBMS1 ANKRD55 ARPC5 FOXP1 SERTAD2 FRMD4A AHR WWOX TBC1D5 MTMR4 LCA5 WDR1 STK17B CASP8AP2 MNT PNPLA8 HNRNPL GRK5 SUCO SCML4 ANO10 NOTCH1 TECR ELL NELL2 RPF2 QKI FAM49B PRKAG2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 IMMP2L ITPKB UBAC2 RUNX1 CELF2 EVL ANKRD44 MBNL1 LEPROTL1 KLF13 FYB1 IL7R LINC01588 PHF19 CASP8 SUSD6 HOOK2 AP000311.1 LRRFIP1 AL359736.1 CDC42SE2 CDKN1B MYO1D IKZF3 HSPD1 AL160408.2 RHOH EPS15L1 AKAP13 MBOAT7 TBC1D5 NCK2 PIK3R1 TCF7 CCDC88C GNG7 TLE3 XYLT2 IKZF1 AC093827.5 PRKCH DOCK9 ANKH TES LFNG CCND3 AC016831.7 PDE4D CD247 LEF1 SSX2IP AC008124.1 RNF44 ARHGEF3 INPP4B AC010894.3 ARL4C FGD3 RTN4 MIR29B2CHG TNFAIP8 WNT7A ATXN7L1 CDC14A GTPBP6 ARHGAP26 DENND4A MTSS1 XKR6 MXI1 NEMP1 PFKFB3 GASAL1 MOB3A RHEB AC020911.2 ARID5B FYN BCL2 LCP1 DNAAF2 STK17B EMC9 ABCD2 BTG3 AC022182.1 AC079313.2 FSIP1 NR4A2 CD6 UMAD1 ATP2B1 PPP2R5C TNIP1 G3BP2 ZBTB4 AGRN STK10 CMTM7\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HIVEP2 FKBP5 ITK PCAT1 UMAD1 IMMP2L CHST11 DOCK10 NIN ABLIM1 ZNF805 ATXN7 RHOH NEK7 RNF4 ESYT2 PATL2 CDC14A EVL ELF1 KHSRP INSR FAM72B ZYX KIF2A OLMALINC ST6GAL1 MAP3K5 KRI1 DNM3 FOXN3 EPC1 FOXP1 CASP8 RAPGEF6 RPS6KA3 IPMK PPIL3 TNRC6B ST6GALNAC3 JMJD1C C1ORF174 RFX3 MAGI3 ERMN SMC2-AS1 C15ORF53 AC095057.2 KLF9 EPC2 AC009226.1 EEPD1 MRPS27 TRAJ28 RPS6KA2 CELF2 TNIP3 PLCL1 CD96 HBP1 AL392046.1 BBX SYDE2 PCBP3 STK10 CEP112 SPATS2L LTBP3 ARNTL PIEZO1 UBASH3A GNG2 PHF19 GSK3B GRIN3A CPEB4 TRABD2A SYNE2 NR3C2 THAP4 ACTR5 DNAJC15 HEG1 PGM3 DAPP1 SDHAF3 BRF1 LINC01588 WNT7A SFMBT2 ARID1B TMC6 PJA1 KAT6A HECW2 ANKRD44 SH3KBP1 ZNF394 C1GALT1 MAP3K9\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZMYM2 VSIG10 DCUN1D4 ZNF846 CREM GCA MAML2 PATL2 LINC00598 GSK3B PLAA AC092634.5 UXS1 ZMYM5 STAG2 SCARB2 PLGRKT AASDH AKR1E2 ANO10 SAP130 BIN1 CDYL ZCWPW1 KLF13 COX19 EIF4E AL354732.1 GATA3 RPS6KA2 DESI2 TTC39B AKAP11 LDHB WNK1 AC009126.1 MICAL2 TSG101 RGS10 MGAT5 CCDC32 NAT10 TRPC3 PPP2R3B AC008771.1 STT3A-AS1 TTC21B KLHDC4 SDHAF3 ZBTB7B RECQL LCA5 SGCE TKTL1 CGGBP1 XRCC3 ATF2 FAM117B PLAGL1 ELF1 AP001318.2 ADAT2 AC097467.3 ZWINT AC004596.1 PDE5A RORA ATP8A1 LINC01135 EMB PEX1 WWOX BBS10 N4BP2L2 AC079594.2 METTL13 ZNF891 SUCO TMEM87A SERINC5 ATPAF2 AC027644.4 CHD1 CBLB MTO1 CCNH CEMIP2 ZNF33B PLK4 PCAT1 ABCA1 MAGI3 STK17B PTBP3 RALGAPA2 KCNJ1 MBNL1 PHF2 GPBP1 PITPNC1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 CCDC88C HIVEP2 ANKRD44 SEMA4D UBAC2 CYTIP FYN ITGA6 RBMS1 LINC01126 NOL4L ARID1A SEPT9 LINC01934 CELF2 HDAC4 TNFAIP8 RNF167 KLF12 TSPOAP1 CD28 SERINC5 PATL2 MNT C1ORF112 AL162377.3 TGFBR2 IKZF1 STK17B BCL11B ETS1 SORL1 LINC00598 GATAD2B SMG6 GPR68 AC009226.1 FYB1 TNRC6B MBNL1 AC016831.7 MSL2 FAM184A RMI2 RPS6KA2 PSMA1 GNAI2 PPP2R5C DGCR2 EPC1 SPTBN1 BCL2 DESI1 KDM4C TENT4B KIAA1551 LCP1 H3F3B PFKFB3 ATG5 TGFBR3 AC010894.3 CCNT2-AS1 CORO1A TRANK1 MYORG ADAMTSL4 ST6GALNAC3 RAI1 AL359736.1 ARHGAP45 AC116366.3 TRAJ28 EPC2 AC011498.1 AC008892.1 TRABD2A MIR3681HG MAML2 RORA TIAM1 CDC42SE2 EPS15L1 SEC31B AP001107.3 RPS12 PTK2B HOOK2 LDLRAP1 BACH2 LRRC8C-DT VAMP1 NUDCD2 MAP4 CD96 DAZAP1 GPBP1L1 HMGB1 IFNG-AS1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SPTBN1 CASP8 RASSF3 TNFAIP8 RUNX1 CSGALNACT1 UBAC2 ETS1 FOXP1 ARHGEF3 ITPKB BACH2 RHOH INPP4B SIN3A CGGBP1 SNTB1 PRKCH UMAD1 PRKAG2 TNRC6B AC008892.1 CYTIP AFAP1 CDC14A CCDC9 TC2N GLS LAPTM5 TRABD2A U2AF2 PATL2 VMP1 PXYLP1 CD247 SYNJ2 OXNAD1 AL451062.3 TMEM131L SMAD7 VIPR1 PARD3B APBB1IP TBC1D5 RABL3 AKNA SEPT9 DBP SH3KBP1 AGFG2 GSE1 RIPOR2 SEMA4D MAMSTR PNKP AC007375.2 LBH LYSMD4 PER1 ACTN1 IMMP2L TSHZ2 RBMS1 STK17B ANKRD44 PDE7B PRKACB IKZF3 ARHGAP25 ECE1 RAB7A AL133523.1 TAF15 PAG1 ATP6V1E2 CHMP7 ANKMY1 MGAT5 CIC PHF19 PPTC7 LIN54 TNFAIP8L1 TRAPPC3 ZBTB38 KRI1 ERBB3 AC076966.1 CCDC114 ZNRF2 ERI1 RPS6KA2 PPP5D1 TOX2 GPCPD1 STIP1 UBASH3B POLR1A RGS3 BCL2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: KLF13 FOXP1 ARHGEF3 NEAT1 MAP3K3 RGMB HECW2 FAM117A STAG2 AAK1 ELMSAN1 CYTIP FHIT PATL2 PNKP ARHGAP15 IKZF1 ELMO1 MIR29B2CHG DOCK10 UBAC2 OIP5 CAMK2D NOSIP RPS6KA2 SEMA4D EPS15L1 TSPAN14 TBC1D5 ITK BACH2 CBLB NDUFV2 IMMP2L MDS2 SMARCA2 ANKRD44 ELF1 MAML2 FYB1 JARID2 KAT6B PPP1CA ZNF800 ZC3H4 AF038458.3 CIC IQCD GLG1 SNTB1 CDC42SE2 PAG1 PITRM1 TOX2 ECE1 FYN PTK2B GSK3A SMAP2 TG ZFP36L1 RFX3 CNOT6L RASSF3 FAM107B STAT1 HDAC4 SPTBN1 RBMS1 SYNE1 TRABD2A USF3 UMAD1 INPP4B AC093010.2 OSER1 NELL2 LEPROTL1 ZBTB2 RUNX1 ZNF441 CDCA3 UBASH3B ADAMTS10 CDK6 RPS29 NFKB1 YLPM1 DNMT3A TRAM2 PTPRN2 PLCL1 ERN1 RIPOR2 LRRC8C-DT PARP8 ITPR1 ZNF652 ARHGAP25 SKI\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HIVEP2 FOXP1 SCML4 LINC01588 CELF2 SERINC5 NF1 BCL11B SEMA4D LEF1 C15ORF53 PITPNC1 HECW2 BCL2 TNFAIP8 BACH2 TGIF1 ITK IKZF1 CD247 CHST11 IKZF2 PVT1 SPTBN1 UBE2D3 FYN ANKRD55 CDC42SE2 PIP4K2A IGF2R MAML2 NOL4L RIPOR2 AC016831.7 CHI3L2 MDS2 PALM2-AKAP2 PRPF40A JARID2 LIPA FBXO15 LRRC8C-DT ARNTL MBP SERTAD2 TOX TSHZ1 PFKFB3 PSMA1 UBAC2 HBS1L SLC38A1 JADE2 TLDC1 LINC00598 RASSF5 HIF1A-AS1 CYP2R1 PATL2 TBL1XR1 ANAPC5 PDE7B MAN2A1 UBXN11 YWHAZ SRSF3 STAT1 ZNF217 IL7R GPRIN3 LINS1 ITPR1 MBD1 SLC2A13 DYRK1A RPS12 VPS35 USP22 ZBTB20 ANKRD44 ATXN1 CACHD1 WDR12 AGBL3 SLC6A6 EIF5A CMPK1 KLF13 TNFRSF1B WWOX AL390957.1 APBA2 TRIP12 PTPRC CDK6 MAP3K5 LSM5 NDUFAF6 ZBTB14 STT3B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 TIAM1 TSPOAP1 LIPA ITPKB PIP4K2A TNFAIP8 MAML2 RAPGEF1 KLF13 LEF1 PIK3R1 CPOX SEPT9 APBA2 BACH2 AC068896.1 TNRC6B INPP4B STK4 CYTIP CCR7 TMEM131L LINC00598 CHD7 WBP11 AP000311.1 NCOA2 LEPROTL1 KLF12 HECW2 JMJD1C DOCK9 NCK2 FKBP5 UBAC2 ADAMTSL4 TRAJ28 ZRANB3 AC099063.1 AC022182.1 HECTD1 BCLAF1 TG CIC CRYBG1 ST7L ZNF324 TCF7 STK10 ACSF3 ARHGAP25 MAPRE2 MAN2A1 MAP4K4 EPC1 TRABD2A RPTOR RERE MGAT4A KCNA2 ANKRD44 ANGPTL6 CDK4 SEC22C ZC3H4 PXN SIN3A PDE4D AC009185.1 ZFP36L1 SLC44A2 LBH TTC39B ELMSAN1 CDK17 ZFYVE28 DOCK10 BCOR RIPOR2 PLEC OXNAD1 AC109826.1 RPS6KA2 MYH9 FLI1 AC022217.3 CBLB USP10 UMODL1 ACVR1C HOOK2 RAB11FIP4 SMARCA2 LPIN2 FYN ARID1B BCL3 SUPT5H LINC01588\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 BACH2 ARID5B RUNX1 AC016831.7 AC093423.3 PXYLP1 SH3PXD2A BCL11B PTPRC TSPOAP1 FYN HDAC4 TSHZ2 MBNL1 ETS1 MIR3681HG VPS26C LBH PIP4K2A ZNF131 ABHD15-AS1 CD2 PDE4B RIPOR2 CSNK1E RERE IKZF1 SCML4 ARHGAP25 FAM117B LEF1 RORA-AS1 CDK17 ST6GALNAC3 BCL2 TBC1D5 CAMK4 AC009226.1 SEMA4D ANKRD44 DLEU2 TBL1XR1 RHOF SP3 ACTR1A KLHL3 CIC CLEC2D AC010894.3 AC005972.4 ZFP36 MBOAT7 DOCK9 TIAM1 CELF2 LINC00598 SEPT9 AL359736.1 GATAD2A AC004551.1 C15ORF53 SNTB1 C18ORF25 RFTN1 FLVCR2 JOSD1 FAM13A CEP104 NSD3 KIF2A C11ORF65 RPS29 CHD7 PPP1R10 NAPA TCF7 SMAP2 AK5 ITPKB TXK AHNAK SRGAP3 EHD4 PPAT KLF13 MNT MAP3K5 NOSIP EPC1 CERS6 OPN3 LIPA MXI1 STK17A TLN1 FAM222B ATP2B1 FEM1C PDE4D\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CDC42SE2 PRKCH TNFAIP8 WDR19 MAML2 PIP4K2A LINC01004 SNRNP40 ZNF586 CD99 FAM107B VGLL4 CDKN3 INTS6L SULT1B1 HIBADH LAMA3 AP000880.1 NDRG1 XPNPEP1 BCL9 ZFP36L1 PSAT1 RPTOR SIL1 ADAMTSL4 FTSJ1 ATP2B1 PWWP2A CD3E USP42 PYM1 TG ASTL TRABD2A ATF7IP JMJD1C ATP2B2 MBD1 ZDHHC14 RPL22L1 HUS1 PIK3C2B ERAP1 PDE4B RUFY3 MAP3K1 TBC1D5 CHFR LINC01588 LINC00861 MTUS1 GPRIN3 CD14 CAMK4 AL137802.2 AC068888.1 HEBP2 SUN1 FCMR RIN3 IFRD1 PLEKHA2 CEP85L MALINC1 TTYH3 ATP6V1G2-DDX39B C1ORF112 PTPRJ ADAMTS13 RAB2B AC006042.1 FLII SLC25A6 GINS4 ZBTB7B FAM172A CDC42 CDK13 TIAM1 P2RY10 ARPC5 P2RY8 NEMP1 TTC13 FRMD4A FOXP1 IPCEF1 AC104123.1 CUL5 MRPL15 BPHL GOLGA8A PPM1K CLK4 UBP1 EEPD1 PDHX CTDSP2 DLG4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LINC01588 ANKRD44 TOM1L2 PRKCA RAD51B AMOT RNF167 FOXN3 BCL11B PITPNC1 MAP3K3 EHD4 TSPOAP1 ZBTB25 RPTOR ACTN1 PLCL1 KANSL1 MARS TM7SF3 AL163932.1 HDAC7 ACIN1 TC2N SP140L TMED5 COTL1 SUCO RNASEH2B-AS1 SMG6 DLEU2 GLS SERINC5 AL136368.1 NF1 TMEM229B KANSL2 NR1D1 DDHD1 RUNX1 AC005726.1 HSPD1 MIR29B2CHG FAM174B PTPRC STK10 CCNT1 EIF1 MTSS1 LEF1 CBLB RAB30 UTRN PRKCH PLK3 CTC1 PER1 ZFP36L1 G3BP2 HECW2 MYO1C DIP2B FANCG CCDC85C CCDC88C STT3B CHD1 PSME4 PARD3B PCF11 MAP3K12 RBM15-AS1 ALG5 CCNY PPP2R5C LGR4 MID1IP1 ATP11B SMG1 PRRT1 ELF2 MICAL2 TTC8 IKBIP LINC00861 VIM-AS1 TLDC1 HDAC4 CDAN1 CALD1 ALG1L2 ARHGEF3 DUSP14 CAB39 LMBRD1 ZNF217 C17ORF53 GLIPR2 SPRY4-AS1 DNAJC5B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 BACH2 INPP4B FOXP1 TCF7 CCDC88C RPTOR PITPNC1 BCL11B ETS1 IKZF1 NOL4L UBASH3B LINC00861 PIP4K2A UBAC2 ZNF846 LPIN2 NEAT1 LINC01934 ATXN7L1 FIZ1 AC006449.6 PVT1 ITK MPP7 AC068896.1 TSPAN14 LBH RASSF3 AKAP13 ITGA6 FAM117A VIM-AS1 FHIT FAM107B RIPOR2 ARRDC3 CDC14A HOOK2 TGFBR2 AC016831.7 PATL2 GTF2A1 GEMIN7 GLS LDLRAD4 MARK4 SAMD4A LINC00598 ITPK1 MIA2 FYB1 ADTRP SMAD3 ELMSAN1 LEPROTL1 PRKCH RGS10 TNFAIP8 TG RIN3 EPC1 IGF1R CUBN RAPGEF6 CELF2 LIPA ATP10A PMEL MNT RB1 PTPRJ PNKP TRABD2A DLEU2 TMC6 RHOH PRKRIP1 RBM20 MEX3C H3F3B ZNF487 DBP SEMA4D AP001107.3 ZMYM2 FAM178B MAP3K14 PRRC2A XYLT1 LDHA HIVEP2 MAML3 NR1D1 AL023755.1 KLF13 ARHGAP26 NSD3 DPYD\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 AL162377.3 CCDC88C IKZF1 TNFAIP8 RIPOR2 LRRC8C-DT SCML4 ETS1 ANKRD44 LINC01934 DLEU2 RUNX1 FOXP1 LEF1 ARHGAP25 ATXN1 STK10 LDHB FKBP5 KLF12 TBC1D5 ARHGAP15 SUPT3H FAM117A PTK2B MBNL1 PIK3IP1 ITK NFIC PITPNC1 TSPOAP1 RASGEF1B GATAD2A RASSF3 LRRFIP1 UTRN CHI3L2 SLC39A10 HDAC4 AL357060.1 ELMO1 PATL2 CELF2 FYN INPP4B BACH2 CDH23 SEPT9 IL7R LINC01350 FLI1 TMEM243 GNG2 AC022182.1 SYTL3 PICALM CEMIP2 RPTOR B4GALT4 CCND3 C6ORF99 NCOA7 KCNN3 OPN3 SYNE1 RPS6KA2 MAML2 ARID5B SOD2 RAD51B PAG1 CPEB4 AKNA PNPLA8 KCNQ4 GIMAP1-GIMAP5 CARS2 RAB11FIP4 AC008014.1 LEPROTL1 PDE4B GRK5 MED12L AC068896.1 PRCP PRKCH RNF216 BCL9L LINC01825 TPRG1 ATM UBXN11 AL359736.1 FLVCR2 COA1 GBE1 BBC3 LINC01588 SPON1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PIP4K2A RPTOR BCL2 PDE4D MAD1L1 FOXP1 TMEM131L CDC42SE2 ANKRD44 MBNL1 SIN3A PITPNC1 ETS1 SEPT9 CD28 TNFAIP8 NDUFV2 PRKACB FBXL17 IL7R TNRC6B TIAM1 KLF13 SCML4 HIVEP2 NOSIP CELF2 SPG7 MGAT4A SLC38A1 PRKCH BACH2 C15ORF53 ERCC1 IKZF1 ITK SERINC5 AC010894.3 CIC CFAP97 TBC1D5 PTPRJ EPHA4 CAMK2D PAG1 PIK3C2B CD96 TNIK TFB1M INPP5F LINC00861 MAT2B RIPOR2 TGFBR2 CDC73 PLCL1 TLE4 AIP ITGA6 AC009126.1 SPTBN1 LSP1 LINC00598 BCL11B RASSF3 PRKCB TRABD2A RNF157 PTP4A2 HDAC4 OXNAD1 MLLT10 LBH DNMT3A PDE4B FYB1 IMMP2L TRIM8 LDLRAD4 MCM3 AHNAK FOXN3 PTPRC HIPK2 ARRDC3 DGKZ FAM107B NLRC5 AC016831.7 TMEM192 CDK6 BCR AL359736.1 LINC01126 MBOAT7 TRAJ28 ST8SIA1 ADAMTSL4 ELMSAN1 NEAT1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PVT1 IKZF1 FAM107B AC016831.7 KLF12 INPP4B CELF2 CYTIP LINC01126 HECW2 TMEM123 MAML2 PRKCA UBAC2 CD247 TNFAIP8 SCML4 ETS1 LRRC8C-DT FAM117A LINC00598 FAM117B COA1 CKAP4 IMMP2L ANKRD11 FOXP1 PIP4K2A TRAJ28 ZNF831 SERINC5 EVL LINC00861 LEPROTL1 DENND5A FYN RBMS1 MIDN LPIN1 YWHAZ AC006369.1 TGFBR2 CCR7 ITGA6 STIP1 TMEM131L S1PR1 STK17B CCDC88C RBL2 CDH23 BCL2 PHF19 TXNL1 LINC01004 TSPAN14 HMGB1 AC022182.1 UBE2D3 MYO1D SARDH KDM4C CASP8 CD44 ZC3HAV1 CAMK2D SVIL LINC01588 DGKD RASGEF1B RNF125 ST3GAL1 CD96 CDK13 RUNX1 POU6F1 TMEM116 PPP2R5C MTO1 LRBA TCF7 FYB1 XPO6 MTSS1 ZNF217 ITPR1 AC008124.1 TES NLRC5 TRIM14 ZBTB16 SHLD1 RGCC AC109587.1 DSE MCM3 PITPNC1 CSK PRCP AL139125.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HIVEP2 LINC00598 FYN TNRC6B CDC14A TNFAIP8 LINC01588 PRKCH SERINC5 KLF13 CASP8 APBA2 HDAC4 SEPT9 PPP2R5C STK10 BCL2 PNKP SORL1 CHD1 STK17B ITK MTO1 FNBP1 MGAT5 DUSP10 INPP4B GNG2 UBAC2 LRIG1 CD96 PDE7B CCND3 KLF7 CIC TOR1AIP2 SCML4 TECR AP1AR AC005726.1 RAPGEF1 CAMK1D AC008937.1 KDM4C TTC39C SGMS1 PTK2B LTBP4 ANKRD44 UXS1 BACH2 ATXN1 C3ORF18 AHR DNAH2 CD82 GNG7 NFATC2 TBC1D5 AC020743.2 DGKD TBC1D4 ATG5 PBX3 DEGS1 LTA SNTB1 AC137810.1 CEP85L PDE4B CYTH1 CSGALNACT1 LINC01934 BHLHE40-AS1 LEF1 PRR5L NFKB1 PPP1CB MLEC ZCWPW1 TMEM243 TTC21B UTRN HECA YWHAZ RASSF3 SPECC1 NSD3 GYS1 POC1B HNRNPF TBC1D14 NDUFA4 TIAM1 LRRC8C-DT PNKD HOOK2 FAM167B NIPBL TIGD4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ANKH PCED1B LPXN CCDC90B PJA2 AC024257.1 CDKN1B DYNC2H1 CD96 AL591885.1 LDHB ARHGAP15 ANO10 CDH13 PLSCR2 TMEM126A MLLT3 GNG2 C2CD5 RHOBTB3 GRPEL2-AS1 INTS8 LRRC8A AP002990.1 MTERF3 CDK19 CEMIP2 SNX10 C21ORF2 AC016831.7 BAZ2A RB1 STK10 AC009509.1 WWC3 C19ORF54 ADARB2 ILF2 ANXA7 DNAJB4 MBNL1 KHSRP ITGA4 ERMP1 C6ORF106 C12ORF75 SMG1 CELF2 STK38L GAS5-AS1 RIMKLB TGDS FNDC3B DMC1 DUSP16 FAM76B AC117394.2 PRRC2C BCL2 KDM4C SARDH ARID5B USP33 IDE TIAM1 MAML2 CAT SLC43A1 CAPN15 HERPUD2 MAGOH AC007450.1 LRIG1 FAM131B GPD1L SNTB1 CMTM7 TG PER2 CYB561D1 KIF15 PHC3 SUGT1 MCOLN2 MED19 SEL1L3 CD226 AL137145.1 AFF1 LINC00598 MIAT CHST11 EPC2 MBIP ITK PRPF39 LPIN1 AC007364.1 YEATS2 ATXN7L3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ANKRD44 SPTBN1 RIPOR2 MTMR4 TECR GLS TTC33 TBC1D5 LINC00910 FOXP1 PITPNC1 HIVEP2 BCL11B RPTOR ARHGAP15 EPC1 SH3PXD2A LINC00598 PTK2B CDC42SE2 MAD1L1 ATXN1 ETS1 KRTAP29-1 CSGALNACT1 AP000787.1 TMEM123 LINC00861 SCML4 ETV6 NLRC5 MPZL1 AP000311.1 FOXN3 HECW2 MBNL1 NEMP1 TPP2 LEPROTL1 STAT4 FAM184A IKZF1 AL163932.1 CDH23 STT3B LY75-CD302 PXYLP1 HNRNPUL1 SLC11A1 GPBP1 KLF13 ITK PHF19 SIN3A MAST4 FGD3 LINC01588 KDM2A RBMS1 SMAP2 KAT6A PIP4K2A SNX9 FBXO11 THRAP3 CRTC3 RBBP6 FAM107B CCDC6 RAP2A POU2F1 CEP85L DNM3 GNPTAB OXNAD1 CASP8 BICDL1 MUC1 AP003031.2 AC091948.1 BICRAL GALM FAM168A ZNF580 ZNF217 NKIRAS1 ARSG TSPOAP1 TTI2 AL392046.1 CD2 ZBTB41 CKAP4 TGFBR2 TIAM1 LINC01135 ATP6V0E1 SMG6 TRABD2A SNTB1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNTB1 IL16 IKZF1 ITPKB FOXP1 MFSD8 DNPEP ARHGAP45 DIS3L2 XYLT1 GATAD2A AC009126.1 FYB1 CROCC STIM1 PRKCH MAML2 VPS13D PTK2B NEMP1 FBRS FOXN3 CYB561D1 TBC1D5 FHIT THEMIS NFE2L2 PVT1 ANKRD44 EPS15L1 HNRNPUL2-BSCL2 PRKCB BCAS3 NSMCE1 ZBTB20 MCM9 CYTIP AC005726.1 SOAT1 ABI1 IL7R C15ORF53 AC058822.1 ZFP36L1 RELL1 HDAC4 TMEM143 PRPF40A HLA-DMA NF1 SH3RF3 KLF13 FKBP2 MSRA TSPOAP1 GFOD1 FBXL17 CAP1 KIFC1 TECR TOX2 ADTRP CHI3L2 PRKCQ MACF1 BCL11B KLF16 BACH2 NDUFC1 ETF1 ARMH4 RAP1A AP000787.1 PBX4 LINC01588 TSHZ2 SNX9 RIPOR2 DVL2 TP53BP1 LDLRAD4 TMEM189-UBE2V1 FLNB ST3GAL2 CPEB2-DT PRKCE ABHD15-AS1 UST NCK2 GAS2 ATP8A1 PPP2R5C RPTOR MAN1C1 MGAT4A FAXDC2 PDE4D AL136307.1 KDM7A SLC9A9\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 HDAC4 GRK5 AC068896.1 MAML2 ATXN1 CYTIP AKNA PRKCH ETS1 RIPOR2 IKZF1 EVL RHOF SIN3A TBC1D5 ERCC1 ATG5 TNFAIP8 RPTOR TNRC6B SGMS1 ST6GAL1 SUB1 ARID5B FYN ANKRD44 UBASH3B INPP4B SEPT9 HTT IKZF3 CLTA AC010271.1 NR4A2 AL390957.1 CBLB KDM2B C5ORF51 CDC14A ITPR1 TNFSF10 NEAT1 ARHGAP15 ST3GAL1 PAG1 RASGRP1 AC098582.1 IQGAP2 TRANK1 JMJD1C PIP4K2A ZBTB4 SUSD1 ICA1 GLB1 ARID1B MAST4 MGAT4A CDC42SE2 TIAM1 TG CASP8 NR4A1 FGD3 GSE1 MBNL1 CHST11 RUNX1 WDR82 SH3KBP1 PTPRC ATAD2 CCDC85C HNRNPUL1 GPD1L ZNF589 LINC02341 UBAC2 AURKA ARSG BICDL1 SH3BP5 HRH2 TUBA4A C6ORF106 GDPD5 MNT PRPSAP2 RORA-AS1 SEMA4D ZC3H4 ZNF395 AC079313.2 AC009126.1 JOSD1 CSK TMEM131 TTC39B MECP2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: INTS6 SYNCRIP MGAT5 GALNT1 UPP1 NFKBIA TTC39B CMC2 NME7 SEPT7-AS1 RORA-AS1 TSGA10 IKZF1 BAMBI ATP12A MANEA KIF2A SYPL1 CMTM7 TPM4 LINC00893 CBLB HLCS CAB39L BCL2 CNDP2 BBS7 REEP5 AKIRIN2 NEIL2 ZNF521 ITPKB FAM214B ELMO1 TOX CALD1 RCL1 PAQR8 CD99 SUB1 THEMIS KIAA1586 AMPH TYW1B CSGALNACT2 NT5DC2 PLXNA4 PIK3R1 UGP2 RAPGEF2 SCEL TAOK3 AC019163.1 AC007513.1 IL20RA TENT4A LPIN2 L3MBTL3 IGHV3-33-2 UBE2D3 SSX2IP AC027031.2 SPAG6 NR1D1 FOXN3 TMEM123 UST CAMK1G AL162311.3 RAP2A RNF111 SLC25A6 PHC3 TRIM56 RAD54B AC022126.1 KLF1 CAMTA1 AC097534.1 STX7 AF117829.1 ADRA2B SMARCA2 ULBP1 ISPD XPO1 FYB1 RGMB AC090517.4 RPS29 RELL1 FAM117B HBS1L NT5DC1 GCNT1 PPM1B KLHL28 ATM ENKUR AL133523.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TNFAIP8 TIAM1 UBAC2 PTPRC FYN AC016831.7 INPP4B LEF1 MLLT3 TGFBR2 TCF7 FOXP1 ASAP1 HIVEP2 CSGALNACT1 ATP8A2 TBC1D5 PHF19 SEMA4D LINC01588 FHIT CDC14A RORA MTSS1 LINC00598 SNTB1 RAD51B AC098582.1 PPP2R5C EVL ARHGAP15 CDH23 CELF2 RASSF5 AKAP13 HDAC4 SPEF2 ARHGAP25 ZFAND5 SCML4 BACH2 RMI2 PDE4D CEMIP2 ST6GAL1 LPIN2 AL162377.3 SLAIN1 CD247 INTS6 PTPRJ MAPRE2 PVT1 ARID1B MGAT5 ATP10A AHR ZBTB20 ITPKB ENSA DGKZ TRANK1 TOM1 MYB LCP1 CYTIP IFNG-AS1 UMAD1 ARID4B TRAJ28 THUMPD3-AS1 INO80B RBPJ HMGB1 C1ORF112 FAM161A ZFP36L1 NOSIP STAT1 GNAL MCM9 SEPT9 RAPGEF6 KIAA0319L TSC22D3 PITPNC1 CEP85L KLF13 PNPLA8 FOXN3 ATG5 AC009486.1 STIM1 NR3C1 GSE1 LINC01934 PCAT1 KIF2A FAM13A AP000311.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MAML2 DOCK10 SERTAD2 ETS1 TSPOAP1 KLF12 FAM76B AL359736.1 LRIG1 MBP CDKN3 GNG2 MRPS33 FAM161A ADI1 VIPR1 KLF13 AC024592.3 IQSEC1 TERC ZBTB5 ITPKB IKZF1 MPC2 GDF5 EIF2B4 LBX2 RAD23B CD72 BACH1 AL109955.1 MBD4 GSK3B ENKUR CCDC9 IGSF9B C15ORF53 ARHGEF3 AC022182.1 PRKCA MIR3681HG PTGR2 ELL DOCK8 LINC01135 ALDH6A1 STK24 CRLF3 PXYLP1 BBIP1 ZNRF2 RABGAP1L PTPRJ EMC9 STT3A-AS1 NF1 RAD51B RPTOR SMU1 PEMT USP34 AC008124.1 PLCXD2 TYW1B EMC2 TNFSF8 MAN1C1 AL450998.2 SLC12A7 SF3B5 LMBR1L UBALD2 AC007163.1 RAB8A PFKFB3 PTPRN ARHGAP18 STK17B CABLES1 HMGN4 AL592166.1 SIN3A KLF9 AC083798.2 LMAN2L ARHGAP31 TTC37 AL162431.2 AC243960.1 WDPCP KDM4C AC007950.1 BMT2 DUS2 RAPGEF6 TIMM44 ANKRD44 SELENOI RAB7A MMGT1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CDK6 ZYX IMMP2L ZNRF2 SOD2 UPP1 TBC1D19 BCL2 TPK1 MRPS30-DT DDX3X DUSP10 SERTAD2 RAB11FIP4 EBF1 B3GNT3 SGK3 C8ORF59 PLCXD2 LINC01350 ANXA6 GGCT LEMD1 EPHA1-AS1 PIK3R1 CLYBL COTL1 GPD1L TERF1 POLR3A AK5 TIAM1 PVT1 SLC7A6OS TPGS2 CDC42SE1 SMYD3 C5ORF34 ANKMY2 EPHB6 GPBP1 PPP2R5A NR4A2 ST7 C1GALT1 DISP3 GSTK1 AC008083.1 ASB8 VPS36 STRBP PMEL WDR12 WDR88 EPHA1 MAFK UBXN4 AL080251.1 AL512625.2 XRRA1 RPL37 ZBTB8OS COG3 TXNDC12 AASS ETS1 SELENOF NRIP1 HIVEP2 FAM49B AMZ1 MRPL47 LRRC58 TSC22D2 USF3 LINC01004 OTUD6B-AS1 CCDC7 ZC3H15 CCDC77 CYB5A TNFRSF1B CTH DIABLO PYROXD2 BPGM CCDC59 LINC02042 TTTY15 CDKN3 SYNE1 CMTM7 AL138752.2 MGAT5 SERINC5 AURKA PIGU PATL2 SLC25A28 AC079171.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AAK1 NFATC2 LINC01126 DYRK1A CCDC88C GNG8 TRAJ28 CSGALNACT1 ASCC1 AL163932.1 TMEM263 RUNX1 DBP NDUFV2 PRCD IL4I1 AL591885.1 LEF1 BCL11B ZNF846 SEPT9 DNAH2 DRAIC ISG20 DPP9 RAI1 MAD1L1 FOXP1 JARID2 CDH23 SPECC1 CHD7 LINC01588 ZNF652 THAP12 AOAH NR3C2 EDEM3 SEC31A SPTBN1 ATP1A1 UBASH3A CELF2 TNFAIP8 TLE4 HHAT DDX5 C1GALT1 ADAMTSL4 MPZL1 AC009126.1 LENG8 NEK7 VASP TMEM202-AS1 IPMK MACF1 SNX9 KCTD21 SMAD2 CYTIP MARS PTPRC TIAM1 AC022182.1 ELF2 C2ORF76 SERTAD2 CDKN1B RAP1A ZNF786 PLB1 RFFL MARCH1 IL16 ANKRD55 SEC23B WDR74 AC104109.3 LINC01004 ADD2 HMGB1 MYH10 RASSF3 STIM1 MBOAT7 SPAG8 ADAMTS10 LIN7C MIR29B2CHG YWHAQ IQUB FAM83D ZBTB7B ST6GAL1 MLLT3 MNT IKZF1 SMYD3 GLIPR2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: IKZF1 LINC01588 AKAP13 UMAD1 TNFAIP8 STK10 RUNX1 ARHGAP15 BCL11B FOXP1 ARMH4 RPTOR AC016831.7 RAD51B CHST11 CDC42SE2 CELF2 INPP4B ARHGAP25 TIAM1 UBAC2 IQUB CCDC88C LCP2 PITPNC1 LIPA ANKRD44 LBH FOXN3 SERINC5 FKBP5 ARHGAP18 HDAC4 KLF9 PRKCH ITPKB TBC1D5 HIVEP3 BNIP2 FAM49B FAM107B LINC00598 ATP10A BCL2 IMMP2L MSI2 TAF1 AC008014.1 LEF1 KLF13 RBMS1 ITPR1 CD82 ACTB TSPAN14 NFKB1 PPP2R5C ASAP1 JAK1 RPS6KA5 NEMP1 AUTS2 MIR29B2CHG RAP2A FYN FBXO15 EVL DOCK9 EMC9 RIPOR2 RHOH NFATC2 TTC33 TMEM59 NIN RNF44 COL23A1 ST6GAL1 ARHGEF3 PIP4K2A CD247 SPTBN1 KLF12 ZBTB25 CMTM7 SYNE1 ANK1 HIVEP2 M6PR SNTB1 STT3B FOXN2 RALBP1 DNM2 RRP9 LINC00861 PTPRO MBOAT7 TNFSF4 ATP6V1G2-DDX39B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 CRYBG1 LPIN2 ATG5 SNX9 LIPA TCF7 CROCC IKZF1 LEF1 RFTN1 AC016831.7 MBNL1 TNRC6B RASSF3 BACH2 RUNX1 ITPR1 TMEM131L BCL2 TBC1D5 ST3GAL1 RBMS1 ANKRD44 ETS1 ERCC1 CDH23 CTDSP2 PRKCH RERE PITPNM2 ZCCHC2 CDC14A LINC01588 CSGALNACT1 FYB1 UBAC2 RPTOR GRK5 SEPT9 RELL1 NOSIP AC022182.1 PCAT1 IL16 PIP4K2A KAT6B SMG6 PDE4D BCL11B TBL1XR1 PPM1K AL669918.1 TMEM189-UBE2V1 AC079313.2 MDC1 HAUS6 ARID1A ITPKB FBXO15 AL359736.1 MACF1 MTMR4 CMTM7 TTC33 RASA2 AC069368.1 NCOA6 CLCN3 TNFAIP8 ARID5B PRKCB SSH2 RB1 KLF12 SORL1 ABLIM1 PDIA4 ALG5 LEPROTL1 RPS6KA5 RASSF5 ARHGDIB TPRA1 ACTR1B CTSB ARHGAP26 ABCB9 AL162377.3 HEBP1 ZNF496 TRABD2A AL138752.2 TNFSF14 KLF13 MARCH4 RAD9A DUSP10 DIS3L2 CD82\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SMG6 AKAP13 SEMA4D MBNL1 BCL2 BCL11B RUNX1 AC010894.3 LINC01588 RIPOR2 MAD1L1 RPTOR PIK3R5 PRKCH UBAC2 EIF4E3 ATG16L1 UXS1 CDC42SE2 MAP3K5 KMT2C SMAD2 TRAJ28 NLRP1 KLF13 SNX29 UBASH3B PTPRC ASAP1 TCF7 SERF2 TSPAN14 PATL2 FBXW11 TTC39C RAPGEF1 WNK1 FGD3 CHI3L2 STIP1 FYB1 PITPNC1 MACF1 TBC1D5 METTL9 SLC44A1 AFG3L2 TRABD2A KCNJ10 ACTR5 TMEM238 EMC9 AP3M1 LPXN LBH SUSD4 RNF216 AASDH STAT1 AC008892.1 LINC01524 RNF24 PLCXD2 EMC7 PEX1 AC016831.7 ODC1 MMS19 MALINC1 PSD4 CELF2 SFMBT2 TIRAP CCT8 HIVEP2 NKIRAS1 PDE8A ZNF106 BCL9L TARDBP EPS8 PTK2B SYNGAP1 SLC25A23 KIF22 MAML2 SOD2 MRPS31 FAM214B EXT1 ACTR1B LYRM4 CD72 RHOA CIPC RASAL1 SCML4 TGFBR3 MCM3 NCOR2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH FOXP1 BACH2 HDAC4 AC069368.1 IKZF1 RPS6KA2 INPP4B HIVEP2 SEPT9 AC068896.1 ITPKB RAD51B AKAP13 MIR3681HG EML6 MAD1L1 TTC33 ATP6V1E2 EVL ANKRD44 HPCAL1 PXYLP1 SERINC5 RASSF3 PITRM1 ATG5 CRTC3-AS1 LINC01934 SEMA4D JARID2 PVT1 TRABD2A TCTN3 CFLAR LPIN2 FGD3 KCNA2 C1GALT1 PCSK5 RGMB TGFBR2 RMI2 ETS1 OSBP ABRACL CABIN1 LINC01588 SERBP1 UTRN PCSK4 MBNL1 FNDC3A ATP2B4 TIAM1 AL591885.1 HIF1A-AS1 AC007450.1 HIVEP3 MPP7 LIMS1 CYTH1 AL512791.2 HIP1 MAML2 IMMP2L PNKP ELF1 ZMYND8 AFAP1L1 LIPA LINC01004 CDC14A ARAP1 RBMS1 LINC00598 RHOH TLDC1 RAI1 CORO7-PAM16 RHOBTB3 RABL3 PHLPP1 GATAD2A CCDC32 ISCA1 THRAP3 DCLRE1C AL133523.1 CHI3L2 PPP1R16B AL359736.1 TRAJ28 KCTD9 PATL2 SEC31A ATP1A1 PARD6A LINC01184 SIN3A\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TTC33 VOPP1 BACH2 PATL2 HDAC4 FOXP1 STIM2 CCR7 TNFAIP8 CERS6 TCF7 TIAM1 CDC42SE2 SEPT9 RAPGEF6 ITPKB PDE4B RERE TSPOAP1 PCBP3 WNT5B MAP3K3 STAT6 PRKCH DNMT3A LINC01588 NEMP1 IRS1 ZFP36L1 FOXN3 AC010894.3 NFKB1 RREB1 TRERF1 CTNNBIP1 CAMK2D C1ORF112 SMG6 VPS13D CDC14A RPS6KA2 LIPA GRK6 CARS2 HNRNPD OXNAD1 DOCK10 AC016831.7 CDH23 GRK5 ANKMY1 SMAP2 WDFY2 IKZF1 PIK3R5 PRKCQ MAML2 BCL2 DCAKD UBASH3B PLXNC1 EPC2 ANKRD44 BAZ2A SERTAD2 RNF167 RGCC ELMO1 BICRAL IQGAP2 CUBN NDUFV2 AC015813.2 ACLY ZNF331 NOSIP SP1 TMEM243 ARHGAP21 S1PR1 HEBP1 NKIRAS1 HOOK2 AL160408.2 SPTBN1 B4GALT1 ETS1 PPP2R5C PRKCA RASA1 CCND3 COX7A2L RPTOR HBS1L AFF1 AC005697.1 TNIK ARHGAP15 DERL2 RAB43\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: BCL11B ARHGAP26 AL359736.1 RUNX1 CHST11 RB1 FOXN2 LEF1 IMMP2L TC2N UBAC2 PLCL1 FOXP1 AC016831.7 MAML2 LINC01588 VPS13D PRKCH MAPRE2 SEPT9 SIN3A LINC01841 ITPKB PRKCA LCP2 SKI AP000311.1 USP39 TCF7 PVT1 NEDD4L BACH2 LDLRAD4 ADARB1 HIVEP3 TBC1D5 PCED1B RIN3 OSBPL3 RAPGEF1 ELF1 EML6 RASGEF1B UXS1 CLYBL BCL6 ITK TIAM1 ARHGDIB FYB1 ITPR1 HIVEP2 SLAMF1 ANTXR2 ZFP36L1 GRHL1 LINC01597 AL157373.2 PRCP CHD7 PARP16 CAMTA1 ZC3H4 IFIH1 SEC16A AEN PCM1 RASSF3 PYM1 AC068896.1 CDH23 TLE3 MYCBP2 EPSTI1 ARMH4 IKZF1 STIM2 ZFP36 RABGAP1L SBDS PHF19 CDCA3 PARD3B SAMD3 TPRA1 CPSF6 RHOF TCF4 SUSD6 RNF7 RUBCN MSRA IL1RAP FAAP20 TOM1L2 IGFLR1 UTRN MGAT5 KPNA4 BTBD11\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: INPP4B SEPT9 UBAC2 DOCK10 TGFBR2 RHOF LINC01126 UBASH3B ICA1 DLG4 SERINC5 BACH2 GRK6 BCL9L AC009126.1 UMAD1 JARID2 HIVEP2 CASP8 FOXP1 PIP4K2A ELMO1 LEF1 ABLIM1 SPEF2 PITPNC1 HMGB1 C1ORF112 PTPRJ MPP7 PRKCH ST3GAL1 RFX3 ARHGAP25 BCL11B MGAT5 TGFBR3 PXYLP1 AL390957.1 CYTIP CD247 KDM4C CARD19 IKZF3 ARHGAP26 XYLT1 NFE2L2 IKZF1 GRB10 PRKCA SESN1 BICDL1 MLLT3 ZFYVE28 CD44 FYN IMMP2L ARPC5L TMIGD1 ZBTB25 ATG16L1 TNFAIP8 ZNF846 LBH WDFY2 NCOA7 ANKRD44 SDK2 MYCBP2 ATXN1 TANC1 ITGA6 NPAT AKNA CDC42SE2 MAML2 TRMT1L C6ORF89 RIPOR2 PLCD1 RNF44 TRAJ28 FKBP5 PAG1 CHD1 PRKCB CDK19 FOXN2 CDC14A MED12L CSGALNACT1 RASSF3 IL7R STRN3 PVT1 AC010894.3 ARHGEF3 CCND3 KLF12 ARHGAP15\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 KLF13 LEF1 MYH9 IKZF1 RIPOR2 DUSP10 AKNA RBMS1 RNF111 AP000787.1 ATG5 FYB1 ARRDC3 ANKRD44 GATAD2A ETS1 AL357060.1 INPP4B UBASH3B CBLB PXYLP1 TIAM1 ABHD15-AS1 CMTM8 CELF2 PTK2B OXNAD1 CCDC88C NFATC2 LINC01934 FRYL TCF7 BICRAL LINC00861 STYX HECA NSD3 TXNRD1 LINC01588 CAMK2D BACH2 FAM117A KAT6B CDC14A MBOAT7 TNFAIP8 SPTLC2 CASC11 AKAP13 BCL11B ARMH4 RNF4 UTRN MBP GPR132 FYN STIM1 NCK2 RUNX1 TNRC6B CYP46A1 MGA ARID1A KIAA1671 NR3C2 SMYD3 ATP10A RASGRF2-AS1 TPK1 AC079313.2 UMAD1 UBAC2 TP53BP1 SGK1 AC007728.2 ITGB5 ZNF384 ITK MGAT4A KPNA4 RHOF STXBP5-AS1 SEPT9 PRKCQ RFFL PFKFB3 PRKRIP1 TARBP1 ZNF846 AC010894.3 ZNF217 HOOK2 B4GALT1 LRRC8C-DT MLLT3 SOAT1 ARHGEF6 DOCK9 RPS6KA2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SEC31A UBAC2 PRKCH PVT1 BAIAP2 TPP2 NUDCD1 MIR181A1HG BIN3 DOCK9 FAM189A1 IVNS1ABP SMARCA2 SLC9A9 HBS1L PPP2R1B AC107959.4 SLC41A3 FAM174B MCM5 ANAPC4 CARS2 LBX2 RRAS2 AL163932.1 WDR89 IKZF1 NFKB1 PGM3 FAM214A ARHGEF7 PDIA5 EIF2AK1 APBA2 GGH TNFAIP8 PECAM1 C5ORF34 N4BP2L1 SEC24D NBAS DTWD2 CTNND2 OXNAD1 WDSUB1 CDC42SE2 AL157756.1 AK5 BCL2L13 TIFA DTX1 CD44 TMEM123 CDKL4 CPOX PPP2R5E AC022182.1 AC079313.2 AL159163.1 RAD51B C4ORF51 ZCWPW1 APP AC005224.2 CD53 GRAMD2B PLPBP CHMP7 CDK4 TRMT10A AQR C6ORF52 ST3GAL1 TMEM185B MFAP3L CEP128 AL356272.1 AL359706.1 ERI1 ATP2B4 IPO5 ARPP19 AL359736.1 HIBADH AL356215.1 NPC2 PPP1R21 NTNG2 SLC30A9 GJB2 LINC00882 GNB5 ESAM FAM98B IL6ST AL357078.1 ARGLU1 MCPH1-AS1 ANKRA2 SENP2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH FOXP1 LINC01934 CD247 TBC1D5 EPS15L1 TRAJ28 AC010894.3 SCML4 SEMA4D SPTBN1 LINC00598 LDLRAD4 PLCL2 RPTOR CLYBL OXNAD1 PTK2B RIPOR2 TERC DLEU2 PYM1 RUNX1 DAD1 TNRC6B TNIK DCUN1D5 PITPNC1 TRIP12 DNAJB6 CCR7 MAML3 LEPROTL1 BCL11B PDE4D RNF216 TCF7 PRRC2B ANKRD44 AKNA VPS36 KLF9 RHOH STIM1 GIMAP8 C15ORF53 MAML2 TOP1 ZFC3H1 NLRC5 EPC1 AF241726.2 FYN TBL1XR1 AC013270.1 AC079385.1 PPP1R16B AKT1 LBH RABL3 AL359736.1 SAE1 KIAA0355 SREK1 CRYBG1 AC087239.1 CDC14A MAD1L1 ZYX NOL4L LEF1 HIVEP2 BACH2 CIC MAP3K3 PRKCQ RASSF3 DESI2 SYPL1 IKZF1 AP000311.1 HBS1L CRYL1 CAMK2D OPRM1 UBE3D KLHL24 SH2D3C ZCWPW1 TRIM8 NPAT BCOR AC008438.1 PLAUR EFCAB2 USP3 MBP FGD3 SLC25A36 PRKCA\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: QKI SEMA4D PRKCH LINC00598 LINC01934 PATL2 IKZF1 RFX3 CELF2 CBLB AL160408.2 C1ORF112 UBAC2 CDC42SE2 PPP2R5C FYB1 FAM107B IQSEC1 AKNA FOXP1 CYTIP PVT1 STAT4 NCK2 BCL11B TTC33 TMEM131L PTPRC MBNL1 DPP4 CD226 NEMP1 KLF13 RUNX1 TCF7 TECR UBXN11 ARHGAP25 YWHAZ HDAC4 GIMAP1-GIMAP5 BCL2 UMAD1 AL138752.2 AC016907.2 PXYLP1 GLS KANSL1 SFMBT2 LEPROTL1 MAP4K4 LINC00324 AC010894.3 LDLRAD4 AL162377.3 TSGA10 DGKZ SERTAD2 ARHGAP15 CCND3 MAN1C1 MAP3K12 PIP4K2A ITK AC008764.1 UBE2D3 RAP2A WNT7A UBASH3B FAM184A LINC01588 AC068896.1 TNRC6B FKBP5 ITPKB DIP2C LIPA M6PR AC009126.1 GRAP2 PRRC2B ATP12A LMNB1-DT AFAP1 CCDC88C MIR3681HG SEC23B FUZ GASAL1 RBM15-AS1 RAD23B SPECC1 COA1 AC008438.1 PTP4A3 ICA1 STAT1 MAPRE2 VGLL4 LBH\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 RUNX1 AC016831.7 RIPOR2 UMAD1 TIAM1 HIVEP3 CYTIP TNFAIP8 ASAP1 HIVEP2 ABLIM1 RMI2 PRKCH KLF13 LINC00598 ATXN1 EPS15L1 PCED1B STAT1 TBC1D5 PLEC ZFP36L1 ARID5B ITK SLC45A4 HDAC4 UBAC2 CDC42SE2 AC079313.2 WASF1 ZC3HAV1 CAMK1D ARMH4 STN1 ZNF395 C1GALT1 ST3GAL1 AC096920.1 BACH2 SEPT9 NOL4L GRAP2 PVT1 TRABD2A BCL9L MAML2 MIR3681HG ZBTB16 RASSF3 CSGALNACT1 AL392046.1 FAM107B AC068896.1 AP000311.1 SMG6 IKZF1 LDLRAD4 GSK3A TNRC6B CDCA3 RPS6KA2 CARD19 FKBP5 FHIT RAB43 APBB1IP RHOH DSE FYB1 AHNAK C15ORF53 INPP4B RHOF ELMO1 SGK3 MSI2 RAB11A FOXO1 IQSEC1 LCP1 PPM1B NCK2 AC022182.1 LMNB1-DT POU2F2 ZMIZ1-AS1 HLA-DMA PCGF5 C16ORF72 TG BCL2L1 OXNAD1 PTK2B CD82 PDE4B AL359736.1 ITGA6 NFATC2 BCL2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LYSMD2 LINC00861 RORA CBLB AC093423.3 MAML2 MIR3681HG IKZF1 UMAD1 IMMP2L TSPOAP1 RUNX1 MFSD6 AC008014.1 TSHZ2 STAT1 PIGN LINC02384 C1ORF112 MBP AFF1 MYCBP2 MIB1 GRB10 LINC00598 KLF13 AKNA LINC01004 ANKRD44 PRDM2 DIP2A RMI2 CYTIP BCL9L FOXO1 CCDC85C FGGY NFE2L3 CDH23 LAMTOR4 CD96 ATF2 NCK2 ATXN7L1 DNPEP PDE4D CDKN1B RAD51B RASSF3 ZBTB20 CIC BACH2 AL162377.3 ACIN1 FYN ARL4C RORA-AS1 UBAC2 FKBP5 NUB1 NDUFV2 FOXP1 FAM107B RNASE4 CASP8 ITK ARHGEF3 TP53BP2 CSK LINC01132 IFNG-AS1 CDC26 RFT1 PFKFB3 ZFP36L1 MACF1 CNOT10 PRCP GPRIN3 AC104472.3 NABP1 INPP4A RELL1 ABCD2 TNFAIP8 HCG27 PRPF40A PTMA UBASH3B TPMT FGD6 TXNDC16 CENPF CRTC3-AS1 MIR29B2CHG PSMB9 ZNHIT6 SLC41A1 HDAC7 CPSF6\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LINC00598 ETS1 CDC14A ITK RUNX1 NDUFV2 FOXP1 TIAM1 TBC1D5 TRABD2A CYTIP SDR42E2 AC068896.1 AC010894.3 TTC33 DOCK9 UBE2D3 ATAD2 MAD1L1 BACH2 NCK2 RIN3 TBL1XR1 ABLIM1 PARP8 STIM1 PRKCH CSGALNACT1 DNMT3A HNRNPUL1 CARD19 HIVEP3 ITPKB HNRNPL MGAT5 ARID1B TNRC6B IKZF1 AC022126.1 AL160408.2 BCL11B KLF9 LPXN AP001107.3 SCML4 PPP1R16B LINC01588 ZNF217 MIR3681HG HIVEP2 MAML2 LCP1 DUS2 ANTXR2 C15ORF53 SERTAD2 HMGN1 DNAH2 C1GALT1 OXNAD1 KLF13 EFCC1 TMEM131L NOP14-AS1 CDK6 TCF7 KDM2A RHOG IL16 SYTL2 PTMA GRAP2 LINC01934 HELB PRKCE XPO6 FKBP5 PVT1 ARID5B UBAC2 RIPOR2 CCND3 SIPA1L3 BICRAL AC008124.1 CARHSP1 CD247 NFKBID ASF1B RAD51B AC007728.2 WDR1 HBP1 DGLUCY ARPC5 HOOK2 MREG PATL2 ADK NR3C1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 SPTBN1 SEPT9 LEF1 TRABD2A ANKRD44 BACH2 BCL2 ETS1 MBP STK17B BCL11B HIVEP2 SEMA4D GSK3B CASP8 JARID2 MBNL1 AC020911.2 RERE LINC01588 TNFAIP8 HBS1L CD28 STK10 SESN1 PIP4K2A IKZF3 PRKCH PTPRC PSPC1 RASSF3 FYN SERINC5 RIPOR2 STIM1 FAM117A PITPNC1 FRMD4A TIAM1 LINC00598 TG XKR6 NME9 MAML3 KLHL21 CCDC12 CAMK4 TSPAN14 OSBPL3 DNAH6 CBLB PFKFB3 CCR7 ARL4C AKAP7 MAT2A PITPNM2 AL512791.2 UBXN11 NCK2 AKIRIN2 RPS6KA2 JOSD1 PTK2B RUNX1 TGFBR1 ELF2 PXYLP1 AC011498.1 LINC01132 ZNF846 ABLIM1 AC007728.2 TMEM143 GRK5 MIAT RFX2 KLF13 ITGA6 AKNA SERTAD2 RAD51B CDC14A FYB1 STK4 AC011603.2 TSC22D3 AC061992.1 AL121594.1 EMC9 UBAC2 CCND3 BCR ACTN1 C12ORF57 CSGALNACT1 SLC37A3 IL19 C9ORF43\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 MAML2 BACH2 HIVEP2 AL162377.3 TG IKZF1 RIPOR2 CSGALNACT1 ST3GAL1 ASAP1 ZFP36L1 ABTB2 LINC00598 ETS1 STK10 SEPT9 RPTOR RUNX1 IKZF3 IRF2 AC068896.1 CDV3 HIVEP3 TMEM131L MBP MAN1C1 FHIT ANKRD44 SMG6 CIC AL357060.1 PRKACB ENTPD1-AS1 UBA3 CARM1 TBC1D5 RGCC MPRIP KANSL1 FAM214B LEPROTL1 AGRN DUSP22 AC010894.3 PTPRC CCDC88C CEMIP2 TRABD2A PDE4B AL359736.1 DGKZ TGFBR1 TGFBR2 CD82 OXNAD1 XKR6 RCSD1 MYO19 NFXL1 STK17B MAPRE2 KLF9 TRAJ28 BRF1 CMTM7 MEX3C PATL2 OSBPL3 BCL11B MFAP3 NOL4L MEF2D AFF1 AC008667.1 EIF1 PITPNC1 SLC2A1 NLRC5 RASSF3 KLF13 LBH JMJD1C CAMTA1 CARS2 AC016831.7 LINC01588 CAMK2D FLVCR2 MAML3 S1PR1 TFB1M LPP BCL6 FNDC3B LACTB2-AS1 FOXK1 C9ORF72 TIAM1 MLLT3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 IKZF1 PRKCH INPP4B STIM2 BACH2 RHOH SEMA4D CD247 RUNX1 CDC42SE2 LRRC23 MARK4 ITGA6 CDC14A MBOAT7 LINC00598 TMEM88 EFCC1 CIC ARHGAP25 FLVCR1-DT MXI1 KAT6B CELF2 NSD3 FCMR TNIK PRKCE SERINC5 ELK3 MLLT3 DAPP1 MIA3 CCR7 ANKRD11 CD96 CRTC3 RORA-AS1 PRDM10 CREB3L2 EIF5A NFKBIA ITPR1 BCL2 TNFAIP8 BACH1 LIPA AL359736.1 ABCB10 LINS1 PPP1R10 GSE1 SUMF1 ECE1 RASGEF1B MRPL34 INPP5D PRPF40A NFKB1 SSSCA1 CEMIP2 FHIT ZBTB8OS GIMAP8 MBNL1 CNTRL TRAF1 AC097534.1 LBH ARHGEF3 GNG2 PYM1 ZFYVE28 HOMEZ HECW2 LRRC8C-DT ATF7IP UTRN C15ORF53 RFX3 LPIN2 ARHGAP15 PDE4D ZBTB2 SINHCAF CAMK2D SLC39A10 CTLA4 ABHD11 LINC01135 ARRB1 PATL2 AC103724.4 AL392023.2 UBE2D3 CCDC6 INPP5A TMEM143 DNAJB12\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 ANKRD44 RUNX1 FYB1 PIP4K2A SCML4 PATL2 ATXN1 CELF2 ETS1 SEPT9 LINC01588 ITPKB BCL2 HIVEP2 TRABD2A TIAM1 CCND3 CYTIP DRAIC ATG5 ARHGAP25 GMFG ARMH4 STK17B CCDC88C RAC2 LIPA AL359736.1 HDAC4 TGFBR2 MAP4K4 PRKAG2 CD164 CD96 TNFAIP8 PAG1 EVL NOL4L POU6F2 RBMS1 PRKCH TGFBR1 RBX1 RASSF3 PLCD1 ZC3H4 AL162377.3 MXI1 DOCK10 SUPT3H LFNG UCP2 CNPY3 PDE4D CDKN1B FBRS HNRNPA2B1 MAP3K3 ZNF638 RORA-AS1 NLRC5 SLC38A1 NABP1 DGKZ LCP1 APBB1IP PLCL1 IKZF3 MAML2 MGAT5 MBNL1 SERINC5 SFMBT2 UBASH3A MED15 CXCR4 DUSP22 FMN1 PHF19 ABHD15-AS1 ELMO1 RGCC STK10 PVT1 AC009226.1 NCK2 FYN BCL11B Z93930.2 ZC3HAV1 RGS10 LRP8 CEP85L CEMIP2 RIN3 PCSK5 MGAT1 KAT6B ZNF609\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 RUNX1 RPTOR UBAC2 ARHGEF3 RAD51B SEPT9 MBNL1 BCL11B STK17B RIPOR2 PRKCH LINC01588 CCDC9 SEMA4D RAB27A HIVEP2 RBMS1 RASSF3 IKZF1 MAML3 KLF9 TGFBR2 OSBPL3 TNFAIP8 CPOX FOXO3 ETS1 NR4A2 LINC00649 KLF13 PLEKHA2 AC016831.7 STIM1 ANKRD11 UMAD1 ATXN1 FBRS PRRC2B TNRC6B ZFP36 WDR1 AC116366.3 KIF2A PTPRN2 FYB1 FOXN2 FSIP1 TRABD2A PCF11 BICRAL MAD1L1 JARID2 HDAC4 C1ORF112 GRAP2 ABLIM1 CDKN1B ANKUB1 CD58 AC069368.1 POU2F1 EEPD1 PMEL CD247 BCL9L CCND3 ERBB3 DDB2 ITPR1 MIA2 CHD1 PLCL2 SERINC5 CBLB TMC6 LBH LDLRAP1 PTK2B MFAP3 VIM-AS1 XPR1 MIR3681HG LRIG1 TRAJ28 PNRC1 HIVEP3 ZNF131 ARPC5 AC008014.1 KDM4C POU2F2 SUCO FYN PPP1CA C15ORF53 KLF7 AP000311.1 JAK1 CAB39L\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 BACH2 BCL11B FAM117A UBAC2 RIPOR2 HDAC4 LRRC8C-DT PTPRC P2RY8 PPP2R5C CROCC CCND3 SEPT9 BCL2 SERINC5 SEPT6 TNFAIP8 IKZF3 C1ORF112 IMMP2L MAML2 AKAP13 HIVEP2 LINC00598 KLF13 BICDL1 RASSF3 SCML4 PITPNC1 SH3PXD2A PRKCH TNRC6B ETS1 PLEC HBS1L DNAH2 RGS10 ATG16L1 IKZF1 RBMS1 PRKCB CD247 AC016831.7 APBA2 TBC1D5 ANKRD44 PPP3CC CBLB ARHGAP25 RUNX1 CDH23 CARS2 ELMSAN1 FBXO31 SP1 NEK7 CELF2 FOXN2 RHOH TBL1XR1 BCL9L MFSD12 USP3 FKBP5 ARMH4 LINC01629 PIP4K2A SUPT3H TSPAN14 ARHGEF6 HNRNPUL2-BSCL2 LCP2 GSK3B TIAM1 ITPKB FAM96A ARHGEF3 TAF15 LBH MYB MCM9 MX2 SERTAD2 CDC14A CANX CDC42SE2 CIC DNMT3A ARRB1 SPAG7 STK10 PRKAG2 PRKCQ HMGB1 STYX LINC01934 HIVEP3 FYN GPR68\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 PRKCH RUNX1 MAML2 BCL11B UBAC2 TIAM1 CELF2 IKZF3 ANKRD44 BCL2 IMMP2L HDAC4 TBC1D5 RIPOR2 CDKN1B TRABD2A LCP2 AL162377.3 LINC00598 MACF1 PREX1 TGFBR2 PIP4K2A PVT1 IKZF1 HIVEP2 GATAD2A SEPT9 HECW2 PDE4B FAM107B SERTAD2 MYH9 PHF19 CASP8 SPTBN1 SNRK PTPRC UXS1 CACNA1E TSPOAP1 FGD3 JARID2 MAPRE2 KCMF1 LRRC8C-DT PCAT1 AL163932.1 AKAP13 HMGB1 BACH2 PLCD1 RPS6KA2 AC016831.7 LEF1 AC009226.1 AP000787.1 EVI5 PLEC AC010894.3 MXI1 CKAP4 ITPKB LAPTM5 ATXN1 AKNA CCDC88C STIM1 MBNL1 MAP3K3 TCF7 MSI2 SNTB1 SYTL2 AP000311.1 CBLB SLC44A1 NEAT1 RAPGEF1 KCNN3 BACH1 RPTOR SRSF3 STIM2 SIK3 SEMA4D ZNF584 CLEC2D CCND3 FKBP5 AC098820.2 KLF12 IFNG-AS1 MAST4 UBASH3B FAM69A ERBB3 AP4B1 AL138720.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HDAC4 FOXP1 PRKCH ANKRD44 ETS1 BCL11B TNFAIP8 KLF13 CCDC88C SERTAD2 MBNL1 MAML2 GYPC HIVEP2 SSBP3 STK10 ATXN1 IKZF1 TNRC6B NEAT1 ANKRD11 RAB27A AC016831.7 RPS6KA2 BCL2 PIK3CD PVT1 NFKB1 MAP4K4 CCND3 FCMR RGCC PPP2R1A RUNX1 ZFAT SCML4 TBC1D5 LEF1 CYTIP STT3B ZFP36 ZC3HAV1 SNTB1 MYH9 PPP1CA NOL4L OXNAD1 SEC31A RHOBTB3 HNRNPUL1 AC068896.1 SEPT9 RMI2 CA6 AC009126.1 AKAP13 STAT1 AAK1 GNG2 FOXO1 PRKCA ST3GAL1 AC004596.1 PLCD1 SKI CDH23 BCL3 NCK2 GRAP2 RERE ATG5 CD6 TG PNKP RIPOR2 THUMPD3-AS1 XYLT1 PHIP ZZEF1 ELF1 MSI2 PXYLP1 CSGALNACT1 FKBP2 FKBP5 ITK POLR1A ITGA6 GPBP1L1 ZDHHC5 JARID2 ITPKB FYN SIN3A CD55 AL133523.1 LINC01126 STOM FAM117A AL359736.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 KLF13 ANKRD44 TIAM1 TCF7 FYN SIN3A CCDC88C AC069368.1 RUNX1 HIVEP2 CDC42SE2 TBC1D5 FOXN3 DNMT3A RASA3 ITPKB DOCK10 RBMS1 BCL11B AC016831.7 IKZF1 SEMA4D ASAP1 PXYLP1 LINC00598 ITPR1 HECW2 ZC3HAV1 SUPT3H RASA2 KAT6B TRABD2A TMEM131L LUC7L2 NEMP1 BACH2 RPTOR MAML2 RNF44 MAML3 ACTB ITK VPS13D GNG7 CBLB UBAC2 STIM1 LINC01588 RARA PRKCH HDAC4 RASSF5 ARHGAP15 STK17B BCL2 TNRC6B PVT1 NCK2 ECE1 ZNF846 AP000787.1 PKNOX1 LDLRAD4 STK17A CROCC CARD19 IL16 PNKP KLF12 TC2N TSPOAP1 ST3GAL1 LINC00861 CASC11 AKAP13 BICRAL TRAK1 CD96 ARID1B PTK2B PPP2R5C MCM9 PIK3R1 FKBP5 NR3C2 NLRC5 C1GALT1 CMTM7 ZNRF2 PTEN ETS1 KLF7 YLPM1 SEPT9 ZC3H3 MSH2 FAM111A-DT JARID2 TNFAIP8\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH SEPT9 TBC1D5 TRABD2A RAD51B AL133523.1 ANKRD44 ARHGAP26 FYB1 AKNA FYN IQSEC1 CCDC88C PTK2B SERINC5 DOCK10 TNK2 ACOXL ANKRD11 SMAP2 RUNX1 ARMH4 IFFO2 PRKCQ FOXP1 CDK19 SUCLG2 AL157373.2 LFNG ATXN1 PNKP HDAC4 PIK3R1 NCK2 TNRC6B XYLT1 CDC14A TTC39C TANC1 TTC33 ARHGEF3 IKZF1 LINC01588 TRAJ28 P2RY8 CCDC141 LEPROTL1 LEF1 SYNJ2 EVL SLC2A1 LINC00598 MKL1 OSBPL3 OXNAD1 PRKAG2 TCF7 TGFBR2 BICRAL CELF2 PPP2R5C MAML2 NLRC5 BACH2 RASSF3 ZC3HAV1 CBX7 ZNF831 KLF13 IGF1R YWHAZ BCL11B VIM-AS1 ADK ZBTB25 RAC2 CAND2 LASP1 SELPLG ITPKB MYH9 PPM1L LSM4 ETS1 FIZ1 FHIT TPK1 SLC30A7 PCAT1 FAM117B PYM1 ZBTB5 CCND3 TLK1 TNFAIP8 RNLS RAB27A LPXN IFT140 TRAJ50\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: BCL2 NR4A2 ANKRD44 FOXP1 EMC9 MEF2D HIVEP2 AL139246.5 BACH2 ARID1B ITGA6 CD226 RUNX3 FLI1 LINC00598 SERINC5 ARID1A PHRF1 FYN ITPKB MTHFD2 DLEU2 FYB1 CYTIP AC034231.1 BCL9L CD6 CIC BRF1 UBE2G1 SNX9 CCDC88C SFMBT2 CAMK4 TLE4 LBH KLF7 MED12L LPXN LINC01588 LEPROTL1 STIP1 PIK3R1 TSGA10 SEMA4D LDLRAD4 CD247 KAT6B INPP5A XKR6 TNFAIP8 IDH1 CORO7-PAM16 KIF13B ARHGAP45 NEAT1 RUNX1 AES NEMP1 RHOF PCM1 HOMEZ NOSIP METTL13 ARHGDIB ENTPD1-AS1 RAD51B ZNF644 UBAC2 HNRNPLL AGO2 TTC33 PARN AC007450.1 TPR PDE4D PIP4K2A NDUFV2 SH3KBP1 CASP8 RNF167 LAP3 KIFC1 RUVBL1 NCK2 LSP1 ESRRA MAP4K4 AC004922.1 LINC01126 MCUB HDAC4 CDH23 CAPNS1 MKNK2 SLC37A3 ADAMTSL4 RPS6KA5 LINC01135 GNG7\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATXN1 TBL1XR1 TRABD2A RPE ARHGDIB CD96 RABGAP1L CEMIP2 LINC01215 SLC15A4 CHD7 GPBP1 E2F3 NFE2L2 TNIK KLF9 IPMK LRCH1 RFX3 PIP4K2A FNDC3B CYTIP AC118549.1 DHTKD1 AP1AR AL591885.1 ADGRG6 YBX3 TRIM5 SLC36A4 DENND2A MAML3 APTR UPF2 PIK3CB NAF1 IQGAP2 PPM1L NDUFV2 LINC02446 RAP2A ORC4 APOLD1 FAM69A RLN2 NFXL1 C3ORF52 ATP10D CCDC88C FAM111A-DT TPK1 AL157756.1 NBN RIC1 TGFBR2 WDR78 OSBPL3 ISM1 IMMP2L NAA50 LINC00355 PCSK5 CTH KANSL1L ESF1 NABP1 AC004554.2 NUDT6 KCTD7 ARHGAP5 BCAR3 PRDM10 ALOX5 CBLB PAG1 MIR3681HG CACYBP AL109910.2 SFXN1 RCL1 KIAA0895 PTBP2 AC016831.7 TSPAN5 CENPL MPP7 AC020656.2 TAF7 GAS5-AS1 RASSF3 ABLIM1 DLL1 CIP2A ARL6 LUC7L2 RAD21 CLEC2D MSRA THOC7 AKR1E2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 FOXP1 HIVEP2 TCF7 TRABD2A LINC01934 ANKRD44 ETS1 MAP4K4 CDC42SE2 CYTH1 ELMO1 AC010894.3 PTPRC LDLRAD4 LINC01588 BCL2 PPP3CA CSGALNACT1 EVL SERTAD2 ATG5 BACH2 FOXN3 PIP4K2A AKNA PRKCQ LINC00861 ATXN1 CDH23 STIM1 SPTBN1 UBASH3A UBAC2 IMMP2L ABHD15-AS1 TLE4 FAM107B MGAT4A TIAM1 NPAT PATL2 GRAP2 HEG1 PRKCA ELF1 CDK13 RIPOR2 STK10 STAT3 FAM49B IKZF3 CD247 PRPF40A LDHB AC078923.1 TSPAN5 RASA2 FAM117B AHR OSBPL3 LINC01135 PDE9A LTBP3 ITK MAN1C1 EPS15L1 IL7R SMARCA2 TSHZ2 CUL3 KLF13 SCML4 HK1 ACIN1 AC068896.1 IL16 MAP2K2 TGFBR2 CNOT6L RMI2 HDAC4 ZMYM2 RIN3 AHDC1 PRKCB ODC1 RBL2 RASA3 AL157373.2 RNF167 RARA EDEM3 CCR7 IKZF1 LBH ADK NEAT1 SEMA4D NOP14-AS1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ITGA6 SPTBN1 SMARCA2 LINC00598 AC020743.2 G3BP2 SARDH CCND3 NFX1 MLXIP TUBB4B KLF13 PPP2R5C ZNF384 XRN2 CLASP1 MRPS30-DT FRYL ODF2L ST3GAL1 ADAMTS12 ACTN1 CD3E TBC1D5 MIS18BP1 ARHGEF3 Z83844.3 TRERF1 CAPN5 C8ORF37-AS1 GRB10 DNAJC15 RAD51B UBE2D3 SDR42E2 TRMO TRIM4 CABCOCO1 COQ10B EHD1 GAREM2 DDX23 APOLD1 TFIP11 TRIM68 MATN1 PLXND1 SEC16A WDR82 FAM107B RRM2B MIA3 VGLL4 RECK EIF3J-DT TAF9B SLC35A2 SEC61A1 TRIM5 ELP6 AC022217.3 SMPD4 AC007881.2 BORCS5 THEM4 KIAA0895L FYN TBC1D10B AC079313.2 HMGB1 S100A11 PSIP1 AC093277.1 AC008629.1 AC007285.1 AC009185.1 RUNX2 RASSF3 DHX30 RANBP9 TMEM150B AC107214.1 RRAS PTPRO RTTN PER1 RANBP3 ANP32B KDM5A C16ORF72 CBX5 NEXMIF NLRC3 ZNF143 LINS1 TPM3 AP000275.2 AKNA PIK3IP1 PVT1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 RUNX1 ZFP36L1 APBA2 KLF13 ANKRD44 MIR3681HG TSPAN14 CYTIP TIAM1 UBAC2 C1ORF112 HDAC4 PTPRJ U2AF2 PAG1 TMC6 CXCR4 SDR42E2 CCNL1 PRKACB LINC01588 TRABD2A GSE1 BACH2 TCF7 AC022075.1 GGT7 LINC00598 PLCL1 ZBTB25 PTK2B GRK5 TNFAIP8 BACH1 AKNA LCP2 LDLRAD4 VPS36 KPNA3 UBXN11 AL162377.3 NRL FAM107B PCSK5 G3BP2 TMEM63A BCL11B BCOR NEMP1 C9ORF3 NID1 AC010754.1 SEPT9 MARCH4 MXI1 CFLAR TLE4 PITPNC1 HCG20 NEDD4L GNG2 KATNAL1 TIPARP RFX1 AGPAT3 DOCK10 RSU1 PAXBP1 CCDC6 RASSF5 TTC39C SEMA4D KCNQ4 GCLC SH3KBP1 LEF1 PCBP3 SGMS1 MAPRE2 ARHGAP25 CCDC38 SLC38A1 RAB30 SP1 AL163932.1 SCLT1 SERTAD2 ANKRD17 TRANK1 SLC25A42 ARHGAP15 SYNJ2 CDH23 PRKCH TG AFAP1 BCL2 SNED1 MLLT3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 FYN RUNX1 SUPT3H TRIM8 FOXN3 SEPT9 PRKAG2 TMEM143 BIRC2 FAM107B RAD51B MBNL1 RHOH LRRC8C-DT MAML2 HDAC4 GPC6 NLRC5 TRAJ28 BCL2 KLF13 FAM214B AL109955.1 LINC00861 BACH2 PCAT1 CELF2 ARHGAP26 LIPA XYLT1 ISG15 CD96 ITPKB TMEM131L ORC4 LMAN2L SEC22C LINC01353 DOCK9 PRKCH EME2 ARHGAP31 STN1 UBAC2 PTK2B NEAT1 RAB2B NMT2 ELOVL5 MSI2 GPBP1 CMTM7 MBP RBM15-AS1 RAPGEF1 TPRG1 CHST15 NCK2 BCL11B PRKCA SIK3 TIAM1 AKAP13 SERTAD2 INPP4B CAPZB NEDD4L CERS6 FOXN2 OGDH USP22 RIC1 RGS10 CITED2 AL157756.1 JOSD1 CDC14A TTI2 STIM2 KAT6A GATAD2A VIM-AS1 LDLRAD4 PITPNC1 AC093010.2 FHIT GRAMD2B SLC4A7 CACUL1 RUNX2 CROCC FLI1 SEMA4D ALOX12-AS1 CCR7 LINC00649 PAPOLA SORL1 SAMD4A\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 BACH2 FOXP1 CYTIP RASSF3 AC068896.1 CDC42SE2 ETS1 HIVEP2 TIAM1 KLF13 CASP8 PER1 FAM107B SERINC5 TGFBR2 PRKCH ANKRD44 ABLIM1 SEMA4D RIN3 BCL2 MAML2 ATXN1 SH2D3C ADAMTSL4 CD247 IKZF1 MLLT3 ST3GAL1 ANXA6 EPS15L1 PRKACB HECW2 DNAH2 SLC11A1 SLC38A1 SEPT9 NIN CCDC88C LEF1 BICRAL MBNL1 PITPNC1 AC027682.4 LRRFIP1 PTK2B TLK1 TNFAIP8 MSI2 BHLHE40-AS1 G3BP2 ZFP36L1 TRABD2A EVL RHOF CELF2 PIP4K2A SERTAD2 RAPGEF1 ARHGDIB AC016831.7 NEMP1 PDE4D SNX9 MIR29B2CHG UBAC2 LINC00598 SCML4 MAN1C1 AC009126.1 AGPAT1 CENPT ARHGEF7 NEAT1 GSE1 MAPRE2 CARS2 PCSK5 RAB27A PAG1 S1PR1 ASAP1 IGF1R LBH PFKFB3 RAD51B IQGAP2 TSPAN14 CCR7 JADE2 SIN3A MED15 ZNF217 RWDD2B FBRS GATAD2A HNRNPUL2-BSCL2 HNRNPA2B1 NCL\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 ANKRD44 CELF2 RMI2 BACH2 CCDC88C CYTIP RORA-AS1 MIR29B2CHG TBL1XR1 STIM1 AC079313.2 AKNA ELMO1 CDC42SE2 TRABD2A ETS1 MIR3681HG ST3GAL1 AC109826.1 AP000311.1 ABCB1 SLC38A1 PIP4K2A DOCK10 AL139246.5 BCL11B ARHGAP26 ZNF846 HIVEP3 FOXP1 FGD3 LINC01588 AKAP13 ACTB ERN1 FYB1 GNA13 PRKCH TNRC6B MARK2 LINC01126 GYPC UMAD1 ANO10 TNFAIP8 ATXN7L1 FAM102B CDC14A HOOK2 CSK GRK2 SNX9 C16ORF72 PVT1 SERTAD2 SLC25A6 ZFP36L1 IKZF3 SERINC5 JMJD1C DOCK9 HMGB1 NCK2 LEF1 ANKMY1 TMEM131L TIAM1 AL162377.3 AL163932.1 AC004596.1 LDLRAD4 HECW2 SETD3 SMAD2 ZNF217 AL157373.2 NEAT1 GNPNAT1 AC098484.2 CARS2 SPRED1 SLC25A36 IDI1 CASP8 SCAP ABLIM1 AC007384.1 NOL4L ARL15 TBCB SASH3 AL451062.3 LINC00910 SREK1 GNL1 CCR7 AOAH ZNF292 NR1D1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 ARHGEF3 BACH2 SEPT9 FOXN3 CDH23 PRKCH RHOH ELMO1 LDLRAD4 BCL11B RUNX1 PPP2R5C DOCK9 TNFAIP8 JMJD1C IMMP2L PRKAG2 IKZF1 RASSF3 UBAC2 DLGAP1 ACOXL CCDC88C ANKRD44 RPTOR IQSEC1 TSPEAR CSGALNACT1 LEPROTL1 GNAQ ARSG RAB11FIP4 TBC1D5 CERS6 RAP1GAP2 PRKCQ ARHGAP45 FYN DNMT3A ITPKB TNIK TMEM131L CRTC3 TRABD2A SORL1 KLF13 PLCL1 RIN3 PJA2 TMEM230 IWS1 PPFIA3 TNRC6B HIVEP2 MAP3K3 PLEC PPP1CA CAMK1D ATP6V1E2 CYTH1 PLXNC1 HOOK2 MIR29B2CHG RFX3 PHLPP1 SMG6 UMAD1 TRAJ28 SNTB1 HECW2 IFT140 PDE4D PIK3CD COTL1 ZC3HAV1 STK24 ATP2B1 XPO6 MBP DPF3 STX10 GRK6 FNDC3B CELF2 AC016831.7 EEA1 ANKH AL359736.1 MKL1 NFE2L2 AL390957.1 FKBP5 PAG1 RUNX2 LPXN XKR6 MED12L TPD52 AC013270.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LDLRAD4 AHR MAML2 SORL1 NR4A1 ARHGAP26 RAP2A NFATC2 RAD51B PRKCH RASA2 FAM107B SEPT9 IQSEC1 TSPOAP1 STYX FYB1 LIMS1 PRKAG2 AOAH KLF7 KLF13 MTR CAPZB UBE2D3 TES KRBA1 CD82 FARS2 TBC1D5 ETS1 RASSF5 KIF22 SKI CCDC88C UBXN11 ARRDC3 RNF44 SDR42E2 CARD11 RIPOR2 CDC14A IL6ST CBLL1 IMMP2L HDAC4 AL121983.2 AAK1 PTK2B IL16 ZNF318 BACH2 FLI1 ARHGEF3 ZNF397 CCND3 ZSWIM6 IKZF3 ASIC1 RETREG2 CYTIP RAPGEF1 RUNX2 UXS1 TMEM131L PLK2 AC008014.1 CNPY3 NBN LUC7L2 IKZF1 CUL3 HIST1H2BC RASSF3 PPP1CA RPS6KA2 PPP3CA PCED1B EHD1 CARS2 IGF2R CRTAM FOXN3 TRERF1 WDR78 N4BP1 THRAP3 ANKRD44 FAM85B NOL4L TRAJ28 ATG16L1 RABEP2 AC020911.2 LINC01004 ZBTB25 RUNX1 OPA3 CMIP LINC01353\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 RUNX1 C15ORF53 MAML3 LINC01588 RIPOR2 TCF7 MAML2 CDC42SE2 PIP4K2A LEF1 ANKRD44 FAM107B STIM2 CELF2 ATXN1 NCK2 ANKRD11 BCL11B CCDC88C TG TTC33 OXNAD1 TLE4 IKZF1 GFOD1 ST3GAL1 PRKCH AC010894.3 SEMA4D ITGA6 FYN LINC00598 SNX9 HDAC4 ITPKB TGFBR2 JARID2 RCAN3 AKAP13 PITPNC1 ARHGAP25 LINC00649 PATL2 KLF9 HIVEP2 RIN3 UBAC2 KLF7 ARID4B CASP8 TIAM1 TNRC6B SLC38A1 FAM117A LDLRAD4 GRK5 CRYBG1 CAMK2D RARA ZBTB4 AL160408.2 APBA2 AKAP7 RUNX3 TSPAN14 RBMS1 BACH2 BCL2 ASAP1 FKBP5 TMEM131L ETS1 SORL1 PTPRC NEMP1 NR3C2 DNAH2 PCED1B CCDC12 BTBD19 LINC01353 PVT1 ARHGEF3 PRKCA KLF13 AL359736.1 TSPOAP1 KIFC1 ITK CDH23 CYTIP ARID5B WDR89 MPP7 SEPT9 VPS35 CBLB TGFBR1 GATA3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRC PIP4K2A HDAC4 ANKRD44 CCDC88C ITPKB TRERF1 CASP8 TCF7 FOXO1 BCL2 TNFAIP8 LINC00598 ST3GAL1 FKBP5 PRKCB BACH2 LCP1 BCR IKZF1 UBAC2 ACTN1 IL16 HIVEP3 DNM3 TBC1D5 FGF9 TGFBR2 FYCO1 GSK3B IKZF3 RHOF LINC01934 XYLT1 DNAJC27 ZCCHC2 FOXP1 RIN3 FARS2 CARS2 PATL2 MACF1 PHF19 PCED1B MAML3 SEPT9 HNRNPUL1 SEMA4D RERE ETS1 SERINC5 LEF1 SERTAD2 OXNAD1 UBXN11 RNF44 ADAMTS17 RASSF3 TECR AL031727.2 PRKCH DLEU2 DNPEP ATP11C CD96 CBX1 RAD51B MPC2 DIS3L2 PTCH1 DOCK9 MAML2 MED15 DRAIC MED12L TNFRSF10A U2AF2 POU2F2 SEC24C TOMM70 CD247 CDC42SE2 LINC01366 LINC01184 TBC1D1 KLF9 LRBA LAPTM5 CGGBP1 ZFAT TSPAN14 HIVEP2 TRAF3IP3 POU2F1 STK17B PNPLA8 ATP10A RALGDS ARID3A KAT6A\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 SEPT9 RIPOR2 SEMA4D LINC00598 TRAJ28 PTPRC VAV3 PRKCH ITPKB PIP4K2A CDC42SE2 FHIT TSPAN14 AKNA INPP4B BTBD11 TBC1D5 AC068896.1 EVL DOCK10 LDLRAD4 PATL2 KLF9 CCR7 PVT1 TGFBR2 STK17B ASAP1 S1PR1 LEF1 SMARCA2 LCP1 TCF7 RB1 GAS5-AS1 ARID1B TSPOAP1 SNX9 RAP2A CD247 UBAC2 UTRN ANKRD44 EPC1 AC009126.1 HIVEP3 PRKCQ RPTOR ITGAE MYCBP2 PITPNC1 BCR MAML3 MLLT3 RPS6KA2 RTN4 SEC22C CYTIP RASA2 PPP2R5C IKZF1 AMD1 LFNG CEMIP2 ISCA1 FBXL19 CASP8 UBE2D3 TIAM1 TRIM8 PER2 NFKB1 FAM69A TG RASSF3 CDH23 PARD3B TLE4 RHOF GRK5 RUNX3 TNRC6B BCL2 CORO1A LINC01135 MGAT4A LINC00649 UMAD1 ST6GAL1 FARS2 FYB1 AL445231.1 STIM2 SMAD2 CDC14A ARHGAP26 AC009185.1 ATG16L1 TNIK\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH IKZF1 FOXP1 SGK1 FYN SERINC5 STK17B ST3GAL1 ITK IMMP2L FYB1 ZBTB16 TMEM123 ABLIM1 CIC KLC2 TOX RIPOR2 PIP4K2A BACH2 SYNE1 TTC33 POLG TNFAIP8 AC068896.1 NCK2 TIAM1 POLM PATL2 VASP DNAH6 NFIX MRPL24 MAN1C1 ATXN1 TRABD2A AC010894.3 ATP10A TCF7 MAML2 STIM1 AKAP13 TRERF1 SEPT9 EPC1 PCAT1 LPP PTPRK FBXW11 CSGALNACT1 CDC42SE2 SSX2IP TPRG1 MAP3K3 IL16 ERAP1 IGSF9B TTC13 AL359736.1 KLF12 KLHL3 WDFY2 MBP PDE4D STK32C NEMP1 CCDC88C CNOT7 RBL2 PTK2B BCL11B ATG3 TBC1D5 HECA WDR74 RAB11A FDFT1 AL133523.1 CMTM7 TG KAT6B CASP7 RMI2 ITPKB MLLT3 LBH AC243960.1 RAD51B DNMT3A DCTN4 EPS15L1 GADD45A ATP2B4 HOMEZ PLCL2 RUNX2 ARHGDIB C2ORF42 MAPRE2 AC012560.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AP000311.1 CFAP299 NT5C3A PPP2R5C WDR91 ARHGAP10 UBE2D3 ZBTB20 PMEL NR3C2 BCL2 ZDHHC17 SDE2 AP000781.2 CMTM7 ZNF609 PTPRC NIN ADAM11 AC012507.1 MORC3 WDR19 SNHG8 AKNA SPECC1L-ADORA2A BIRC6 TAF1 CHPT1 AC009226.1 CDK6 AC106779.1 USP22 SERAC1 LINC02384 DNASE1L1 SMKR1 PIGF ARSG DNAJB4 CEMIP2 LINC01588 ACSL3 NTPCR AC073934.1 DCP2 CD8B EDAR ZBTB16 HIVEP2 SUN5 PAG1 WWC2 MTMR8 STK39 ELMO1 CCDC92 ZNF787 PTPN12 MAML2 PFKP MLEC TTL ZBTB14 LDLRAD4 ASPHD2 DOCK8 ZMYM5 SCML4 AC113414.1 MOB1B PLAC8 SKA2 C20ORF203 AL158152.2 TGFBR2 RPN1 LDLRAP1 RPL34-AS1 SIRT1 GSK3B ABHD15-AS1 UPF1 SKI RNF145 FAM117B GPR150 MED22 ADGRD1 PRR5L ZSCAN20 RBM15-AS1 ECHDC1 MGRN1 USB1 NUMB STAG2 TSC22D1 PSAT1 UHRF1BP1 HDAC6\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ST3GAL1 AAK1 STK10 RBMS1 PTBP2 AC117394.2 CMIP RASA2 LINC02320 PFKFB3 LCP2 SLC25A43 FRMD4B OGDH IL32 AC022126.1 FAM129A RORA-AS1 LINC02341 TNFAIP8 RBM12B DDX6 MZF1-AS1 IL2RB SEPT11 FBXW7 VRK3 ERN1 INPP4A SLCO3A1 CMSS1 AC069368.1 MGAT4A AMZ1 RCAN2 AC092718.2 PANK1 AC093423.3 ARMH4 JADE2 TXNIP IRF4 FBXO31 GAR1 GLIPR1 RPS3 KDM4C MAOA EIF1 ARMC2 ADAMTSL4 TMC1 NAA40 FBXL17 ATG16L2 CUBN SMAD2 KLF13 ERCC6L2 AC007728.2 ST6GAL1 BCL9 ANKRD11 ANKRD44 FAM110A NR3C2 PCGF5 IL21R MAMSTR MCTP2 ABHD17A NBAS DHX36 AMPD3 TBC1D8 ARPC5 WDFY1 TOGARAM2 E2F3 TMEM30A CDK19 FOXO3 UBXN11 CXORF40B RALB RNF44 UPP1 CROCC FKBP5 MGAT5 DACT3 CCDC32 RUFY3 KLHL8 TNFSF12-TNFSF13 ZBTB45 TEF PUS7L AL034549.1 NCS1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH RIN3 TIAM1 FOXP1 GRK5 IMMP2L TCF7 LEF1 CRADD MAML3 IKZF1 GPRIN3 AL359710.1 CAMK2D EVL LINC01588 BCL2 CDC42SE2 KLF9 UBAC2 BACH2 MXI1 MCUB STIM1 PITPNC1 TTC33 CELF2 ATXN1 CARS2 ARID1B KAT6B LINC01004 HDAC4 ARID5B RASA2 LINC00598 NOL4L ETS1 AL357060.1 FAM178B NR3C2 VPS13D SEMA4D SH3BP5L C15ORF53 ZBTB20 TRAJ28 CEMIP2 PRKCQ CDK13 PPTC7 DCAKD KIAA2026 IL19 SLC35F2 UMAD1 ZYX TBL1XR1 RPS6KA5 RPTOR SOS1 PLEC STK10 ACOXL KIF22 NPAT SMG6 PRKCA LINC01934 MFAP3 AC009126.1 STK4 AC093277.1 IQGAP2 PIP4K2A PIM1 AL359736.1 STIM2 AKNA CD96 HNRNPC CD8A FAM102B HIVEP2 YWHAZ OPN3 DOCK9 AC093423.3 RB1 MBNL1 JAK1 RNF6 XPO1 C1ORF112 USP12 RORA-AS1 SMAD3 P2RY8 SEPT9 EPS15L1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 SEPT9 LINC01934 AKAP13 BCL11B IKZF1 AC016831.7 NCK2 PRKCH BCL2 STAT1 ANKRD44 LEF1 RORA-AS1 TBL1XR1 MAML2 UBAC2 TIAM1 STIM1 SERINC5 LPP ETS1 ITPR1 LINC00598 TNFAIP8 ARHGAP26 VMP1 KLF9 INPP4B HIVEP2 ELF1 PNKD STIM2 AC068896.1 PVT1 LBH LINC01588 TRABD2A RUNX1 SMG6 PIP4K2A CD247 LDLRAD4 PITPNC1 STT3B CCDC88C ITK OXNAD1 CDC42SE2 TBC1D5 CD2 LINC01004 ARHGAP15 IMMP2L TMEM131L FAM117B RORA ANP32A RASGEF1B CAMK2D ST6GAL1 CCR7 PRRC2B RASSF3 KDM4C NELL2 ABLIM1 EVL ABHD15-AS1 ZBTB38 KLF13 BACH2 DOCK9 ZNF438 CDS1 NPAT PSMA1 MCF2L2 CD96 FNBP1 CLDN15 TGFBR3 ARSG JMJD1C HDAC4 GNG2 AC009126.1 TRAJ28 PDE4D DRAIC SORL1 PTPRC SPTBN1 PLAC8 RAI1 CDC14A PBX4 P2RY8 C9ORF72 RIPOR2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: IKZF1 FOXP1 ITPKB HIVEP2 UBAC2 SEPT9 LEF1 TNRC6B IMMP2L MAML2 AC016831.7 CXCR4 RAD51B PRKCQ IKZF3 RUNX1 SYNE2 PRKCH ARHGAP26 DNMT3A PIP4K2A HDAC4 CYTIP TSPOAP1 SERINC5 ELOVL6 NRL UXS1 SPTBN1 LINC00598 DSE TGFBR2 RUNX3 LINC01135 RIN3 PTPRC RORA-AS1 TSC22D1 MED13L MXI1 SHQ1 CD247 RPTOR CASP8 PPP3CA TBC1D5 FYN BCL6 MAP3K3 AK2 BCOR LINC00649 NDUFV2 TRAJ28 MIR29B2CHG TG TRMO LCP1 ITGA6 SPON1 PPM1B SAE1 STK17B ADK AL928654.3 AP000311.1 AL392023.2 MCM7 ELF1 HOMEZ PARP16 COL4A2 BACH1 AC068896.1 MAML3 TRABD2A IDI1 AL023755.1 DGKD CROCC TNFAIP8 BACH2 AC010894.3 ARHGAP25 ABCD2 ANKRD44 CAMK4 UBE2H GATAD2A CHD1 RAB27A MBP NOL4L KLF13 PDE8A TPRG1 ELMO2 ATM CD6 ZC3H4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 KLF13 FKBP5 NCK2 CCDC88C TGFBR2 MAML2 BACH2 DGKD NLRC5 LINC00598 RUNX1 AKAP13 ANKRD44 BCL11B CCR7 KLF12 LINC01588 TCF7 PPP2R5C CARS2 MACF1 SCML4 LINC00426 RBMS1 LINC01126 TSPOAP1 ATXN1 IKZF1 HDAC4 BCL2 ST3GAL1 ARHGEF3 LINC01934 MAML3 PKIG RIPOR2 RCSD1 CELF2 ARHGDIB NOSIP CRYBG1 LDLRAD4 SIN3A LEF1 PATL2 PPP1CA RPTOR SEPT9 TNFAIP8 RNF38 TG TBC1D5 ACTN1 TSPAN14 MSI2 FAM117B PCAT1 RIN3 GASAL1 FAM49B RAD51B AL512380.2 PXYLP1 ARID1B UBAC2 IMMP2L PLCL2 GLS MAP3K12 IQGAP2 FLI1 TNIP3 ID2-AS1 MCCC2 AC016831.7 SELPLG ARID4B CDH23 NEK7 ZBTB25 GRK2 IFNG-AS1 NEMP1 DNAH2 IRF2 LPXN ANKRD11 CBLB DUSP16 CERS6 RAPGEF1 CD247 FYB1 ITK TOM1L2 BICDL1 USF3 TRANK1 CYTIP\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH FOXP1 RAD51B RIPOR2 ANKRD11 TSPOAP1 PRKCB KLF13 DOCK10 RUNX1 BCL2 STK10 SEPT9 LBH PITPNC1 RIN3 SYNJ2 IQSEC1 BCL9L LINC01588 RMI2 AC008764.1 TBC1D5 ALOX12-AS1 FAM107B CCDC88C ST3GAL1 TRABD2A VOPP1 LFNG MSI2 CYTH1 AP001107.3 ABLIM1 AKNA TNRC6B PDE4D UXS1 BCL11B TNFAIP8 HDAC4 CBLB LDLRAD4 BTBD11 AC008014.1 HIPK2 FAM117B CDKN1B STIM1 NUMA1 DGLUCY IFFO2 PHF19 SUSD6 TAF1D CMTM7 FAM49B DIS3L2 ARRDC2 KIF2A GSE1 GPR137 RNF44 MED12L CARD11 CHFR NDUFV2 KLF9 SH2D3C PHF12 ANKMY1 NCK2 ARID1B IKZF3 ZBTB2 RPS6KA2 ZFYVE28 BACH2 HIVEP3 SKI STK40 GSK3B RUNX3 MDS2 NOL4L CDH23 GRK6 TBL1XR1 GPR157 AL359736.1 SERTAD2 AC002401.1 HNRNPA2B1 ABTB2 MAST4 TCF7 BNIP3L CDC42SE2 CROCC AC005775.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 ANKRD44 IKZF1 CMTM7 LEF1 ST3GAL1 SEPT9 AL359736.1 HNRNPUL2-BSCL2 BACH2 PITPNC1 STK10 PRRC2B HIPK2 LINC00598 PRKCH PTPRC CD82 TBC1D5 ANKMY1 RHOH TNFAIP8 AC068896.1 MAML2 SEC31A RHOF PFKFB3 SBF1 ADAMTSL4 IKZF3 BCL11B CDC42SE2 LINC00861 PLEC XPO6 ZNF131 DOCK9 CARS2 TAF15 LINC01126 CYTIP AC016831.7 SORL1 SNRK HDAC4 IFT140 C1ORF112 ELMO1 SERINC5 FLI1 CASC11 AC005775.1 CD247 B3GALNT2 AKNA ZNF609 RIN3 KAT6B ITPKB AP001107.3 PRKAG2 SNX9 FKBP5 ETS1 DUS2 PDE4D HMGB1 NDUFV2 UXS1 AC010894.3 KLF13 ATXN7 STK4 FAM117A TMC6 ZFP36L1 HINT1 RFX2 MBOAT7 P2RY8 RAD51B BCL9L FHIT ZC3HAV1 IMMP2L TNRC6B ITPK1 TIAM1 PC BICRAL PPFIBP1 PNPLA8 TRABD2A DLEU2 MAMSTR DGKD DAZAP2 DNAJB12 PTK2B TRAJ28\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: IKZF1 TBC1D5 FOXP1 RPTOR SIN3A CSGALNACT1 TRABD2A AP001107.3 TNFAIP8 RUNX1 ITPKB STIM1 TLE4 DNAH2 PDE4B ANKRD44 TCF7 FHIT PLEC HOOK2 FAM107B MGAT5 MAML2 UMAD1 PATL2 DNAJB12 MBP ST6GALNAC3 AC010894.3 LIPA SMG6 MBOAT7 RHOH CIC RGS10 ABLIM1 KLF13 FAM117A MIR3681HG FOXN3 SCML4 CDC42SE2 P2RY8 SERINC5 SEPT9 CROCC BCL2 EPB41L5 RIPOR2 LDLRAD4 ZNRF2 SEMA4D KAT6B BCAR3 PRKCB CCNH HNRNPC RAB43 DNAH6 PRKAG2 LINC01004 SDR42E2 TRAPPC9 PIK3R1 BACH2 FAM49B ITK ZMYM2 TLDC1 CHST11 AC073342.1 TBL1XR1 AC016831.7 DOCK9 PARD3B SRGAP3 PLCL2 OXNAD1 ACLY UMODL1 ALG2 LINC01588 CNPY3 MRPL33 FAM69A PRKCA NDUFV2 AKAP13 CDK13 PNPLA8 RNF38 TTC33 SUPT3H PTPRJ AP000787.1 RBMS1 PVT1 ERCC1 SOD2 RUBCN\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SEPT9 CAMK1D ST6GAL1 NEAT1 SEMA4D COA1 NOL4L CARS2 FAM117A CEMIP2 TGFBR2 UBASH3B LINC00861 SLC35A2 RPTOR CYTH1 RIN3 PLEC SYNE2 FOXO1 LINC01934 TSHZ2 FGD3 PPM1B CCDC88C TSPAN14 ARID3B C1ORF112 NFKB1 RUNX1 TMEM123 TCF7 STAG2 SERINC5 PARD3B AUTS2 LINC01126 WBP11 AC096920.1 RAC2 CMTM7 ZFP36L1 LINC01135 ID2-AS1 ABLIM1 CYTIP FGD5-AS1 CRTC3 STK17B TIAM1 GNAI2 KCNJ12 ISG20 ATP2B4 SH3RF3 AC084200.1 PTPRK CEP85 ELMO1 MARK2 TTC33 SPTBN1 ZNRF2 DESI2 MAP4K4 BCL9L IKZF3 HMGB1 OTUD5 AC145422.1 ARHGEF2 HACL1 B3GNT2 AL359736.1 MPP7 RUFY1 PIM1 TG JADE2 CDH23 RORA ETS1 PGK1 SEC22C SDHAF1 C1GALT1 HBS1L CCDC25 LRRFIP1 HAVCR2 GNAQ FBXL17 IVNS1ABP AC008691.1 ZBTB32 METTL13 NEMP1 GRK5 AEBP2 MIAT\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 BACH2 UBAC2 SEPT9 IKZF1 RUNX1 IMMP2L ARHGDIB OXNAD1 ITK LIPA AC068896.1 PVT1 ARHGEF3 LBH AC024592.3 ARID1B BCL2 RHOH TIAM1 PRKCH AOAH CABIN1 CELF2 PRKAR2B ATG16L1 UTRN SH3GLB1 BIRC2 WASHC3 CDC14A AL451062.3 LEF1 KLF13 PTPRE RPL24 LINC01004 BRF1 KAT2B PTPRC TRAF3IP3 SNRK NXPE3 CCND3 HIPK2 RPS6KA2 RAD51B SKI AL160408.2 SOS1 GRAP2 LCP1 VPS26C LINC01003 TBC1D14 EPS15L1 ARHGAP25 ARL4C CARS2 TCF7 LINC00861 ST3GAL1 CAMK2D PLCL2 KCNJ10 MYH9 SMARCA2 ESYT2 SNX9 AL390957.1 C15ORF53 SLC46A3 MAP3K3 TGFBR2 GSK3B RASSF3 SNTB1 FAM13A ITPKB AC010894.3 MEGF9 TTC33 LINC02520 MBOAT7 NUP37 AHR NFKB1 RASA2 SERINC5 AC008124.1 SLC16A7 ELF1 MGAT5 STK17B GOLGA4 TSTD2 HSPA5 PPP2R5C SESTD1 HMBOX1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHD4 PRTFDC1 RIN3 AL359736.1 PCAT1 MAML2 LINC01358 NELL2 ST6GAL1 PNPLA8 AC009185.1 IPMK EPHA4 ALPK2 DNM3 JAK2 ATG12 SMAD2 CD48 KIF2A NDUFV2 XKR6 NCOA3 PLCD1 AP000311.1 KIAA1257 FAM107B CYTIP AC016831.7 CYB561 LYST ELOVL6 LRCH1 RAB1A NSUN6 TNIP3 OPRM1 ATP8A2 LMNA VPS36 NFATC2 USP12 KLF12 TPK1 LEPROT RB1 SIVA1 AC069368.1 SMPD4 DCAF5 CUBN SNX29 SF3B5 ABCG1 CSGALNACT1 AC009313.1 DLGAP1 LINC01215 KCTD6 SOD2 CDC14A NDC1 ZDHHC17 POU2F1 AP005482.1 ARHGEF4 ATP5MC2 FYB1 MARCH2 MBD1 CARS2 TMEM243 ANKS1A GSK3A VGLL4 ALS2 MEN1 NRIP1 CD247 MEX3C AC243547.3 ZNF516 RALBP1 ISOC2 STK24 MTPN AC011362.1 SERINC5 PHF21A SLC30A5 SPTY2D1 HOOK2 PDCD10 TESC TNFSF4 ABRACL ZHX3 LINC01808 RHPN1 PTPRJ\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 BCL2 AL355916.3 PITPNC1 MXD4 IGF1R ATF3 OXSR1 RAPGEF6 AKNA ZNF444 MARCH6 MAP3K3 ZFR TCF7 ZSWIM8 DOCK9 TMSB4X IKZF3 TGFBR2 RORA-AS1 AC092718.8 SPAG1 AFF1 PTK2B PHF21A SERINC5 FAM107B SUSD3 ANKRD11 LEPROTL1 STRIP1 SSBP3 SP3 C6ORF99 AC079594.2 FOXN3 JMJD1C ZNRF2 IFT57 SNX6 GNG2 SMAP2 CIPC KLHL21 NDRG4 DNAJC9 CXORF40B HNRNPR CLU ASAP1 CCDC69 AP1B1 TNFAIP8 EML6 ARL15 ZC3H6 PPP3CC SESN1 TMEM263 DTNB C1ORF194 TEX46 SFMBT2 RRS1-AS1 BPGM ATP7B MCAM STRBP CBLL1 COX20 L2HGDH RPS29 CA5A LEF1 IMMP2L AC022113.1 TRIM8 DENND6B SEL1L AC097534.1 GVQW2 KIAA0895 NDUFS1 ALKBH7 CD209 ITPKB SPTLC2 CXCR4 PXYLP1 ST3GAL2 FBXO33 JADE2 HADH ALG10B CXADR AL049844.1 NRL SYCE3 AL162311.3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SORL1 STIM1 FOXP1 KLF13 BCL2 RUNX1 MAML3 ANTXR2 LEF1 HIVEP2 CRYBG1 CD44 GSE1 PIK3C2A ARHGEF3 RPTOR TSPOAP1 SGMS1 MAP3K3 GRK5 DNAH2 FHIT CELF2 TIAM1 RAP1A FKBP5 EGR1 CARS2 C1GALT1 SMARCA2 DISP2 ZHX1-C8ORF76 CRTAM RMND1 SOX6 ZBTB11 MACF1 LINC01871 ACIN1 LIG4 UBAC2 ARID1B AL139383.1 ETS1 CHI3L2 BACH2 GBE1 ANP32A AKNA FAM129A BCOR ZFP36L1 SLC38A1 PRKCH BCL11B UXS1 AC008629.1 ITK PBX1 UBASH3B PRPF8 STK17B LSM14B PAQR8 ARHGEF6 CASP8 CD6 CACUL1 VCL PVT1 GPR61 EGR2 G3BP2 ALDH6A1 ARL14EP LDLRAD4 CD8B NOL4L CAT CCNG2 ZNRF1 AC008695.1 LONRF3 RTN4 TMEM123 NBN AC079385.1 CEMIP2 UTRN AC096564.1 EHF AL592071.1 TSKS PCDH9 ORC4 VPS35L NREP AC079313.2 MAP4K4 XYLT1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 BACH2 ABLIM1 LEF1 FOXP1 HIVEP2 CMTM7 YWHAZ TGFBR2 SERTAD2 HDAC4 ACOXL CD47 IKZF1 UBAC2 C1ORF112 ARPC5 AL445248.1 CLEC2D TRAJ28 LINC00426 MTUS1 DOCK10 EPS15L1 G3BP2 TRABD2A OTUD5 GMFB ELMSAN1 OPN3 RIPOR1 EGR1 UMAD1 LCP2 ANXA6 KLF7 RASGEF1B GSK3B PCAT1 SERINC5 LINC01934 AL049629.1 MAML2 LSM4 CDC42SE2 AC005041.1 SEC31B LIPE-AS1 LINC01588 TESK1 TBC1D4 HDAC7 ITPKB PNPLA8 SLC38A2 CEMIP2 ARID1B WDR89 MATN1 AL390957.1 NFXL1 OSBPL3 EIF5A ATP6V1E2 AC109492.1 CBLB PIK3R1 AC068896.1 CMTM3 GOLGA3 GYPC INPP4B RABEP2 AL160408.2 HMGN1 NCK2 SEH1L BPGM STRIP1 NSD1 GATAD2A PRKAR1B RGS10 LINC00598 ATG16L1 TMEM243 RAI1 SPEF2 L3MBTL1 RAB26 GTPBP6 AC027682.4 ARID5B CDH23 SYTL3 MICAL2 RASSF3 AHCYL2 TAF3 AC010894.3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 HIVEP2 ST3GAL1 TBC1D5 LEF1 TCF7 KLF13 HDAC4 TRAJ28 IKZF1 LINC00598 SERTAD2 RUNX1 CSGALNACT1 MBNL1 BACH2 TRABD2A SPTBN1 AUTS2 TNFAIP8 SERINC5 PIP4K2A ANKRD44 ARHGAP26 UMAD1 XPO1 AC010894.3 PDE4D CYTIP OXNAD1 ANKRD55 LBH STIM1 HNRNPA2B1 TIAM1 ARID5B TNRC6B CCR7 TMEM123 ITPKB BTN3A2 PRKCH RPS6KA2 AKAP7 ETS1 ACTN1 SIL1 ST6GAL1 HBS1L RHOH C15ORF53 MIR3681HG UBAC2 FHIT MAML2 VAV3 CAMK4 MBP AL591885.1 THEGL NEMP1 LINC00426 PNKP TSPOAP1 ATXN7 AC011481.2 DNMT3A HECW2 AP001107.3 CHFR LPXN TSPAN14 SLC11A1 ARMH4 MAN2A1 LCP2 CIC ADGRG6 PXYLP1 ARID1B PLEC KAT2B LINC01588 B3GNT2 BACH1 NXPE3 BICRAL ZSWIM6 AOAH TPRG1 CRTC3-AS1 AC009185.1 AL138720.1 MFSD8 AL390957.1 SORL1 RASSF3 PJA2 EEPD1 SOD2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: BCL11B KLF13 FOXP1 DOCK10 RFX3 PPP2R5C HOOK2 BACH2 AC016831.7 MIR3681HG PAG1 LINC00598 TLN1 RAD51B IKZF1 ARID5B PTPRC IMMP2L XPO1 UBAC2 TBC1D5 OXNAD1 MBNL1 ANKRD44 DST CDH23 AL359736.1 ZBTB20 HIVEP2 AL163932.1 AC079594.2 PXYLP1 HDGF SEPT9 ST6GALNAC3 CCNG2 ST6GAL1 CSGALNACT1 LRCH1 PLCL2 RBMS1 AC097713.1 MXI1 ATP10A SEC22C PPM1B MAP3K3 CDCA4 GIMAP1-GIMAP5 KPNA4 TOP2B UBA3 RASSF3 PAQR8 ELOVL6 ABCB9 RMDN1 CCR7 ST8SIA1 SERTAD2 LINC01135 FOXN3 KCTD21 TRANK1 AC007163.1 ITGA6 HDAC4 PLCD1 RPS6KA2 PDE4D FLNA IL7R DBP RASGEF1B BACH1 SH3BP5 AC008875.1 KLHL29 FGF9 MTMR12 RARA NR4A1 LSM4 ATXN7 PIK3IP1 AC010894.3 PRKCH PRIM2 AC020743.2 WNK1 SPTBN1 THEMIS FGD3 KCNN3 BTBD11 MLLT3 SF3B6 CTNNBIP1 TSPYL2 TNRC6B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 PRKCH RIPOR2 MAML2 PATL2 ITPKB LEF1 BACH2 TGFBR2 CD8A TCF7 ANKRD44 AC016831.7 BCL2 DDX17 ZNF846 ZFP36L1 SCML4 CDH23 SERINC5 TRIM66 SEC31A ARHGEF3 ZBTB16 RHOH AC007040.2 CIC SORL1 RIN3 CCND3 DPP4 PRKCB CBLB PITPNC1 AC010271.1 KLF9 TGIF1 AC096920.1 SIN3A DNAH2 ZBTB20 POU2F1 BCL11B ZC3H3 SNTB1 SEMA4D SLAIN1 CAPG NAP1L1 ETS1 ELOVL5 MIAT TTC33 NR3C1 MATN1 FARS2 ABCB9 POLR3D FBXW4 RREB1 CCDC12 LEPROTL1 FLI1 LINC01004 TBC1D10B ATXN7L1 NUDT22 AC069368.1 ZBTB7B AC009126.1 ATXN1 PAQR8 FAM184A RNGTT CSK MTR AL357060.1 RAD51B HDAC4 NLRC5 BIRC3 IMMP2L LINC01366 ASF1B FOXN3 ZDHHC14 MCM3 SOCS5 UFC1 H3F3B FBLN7 RFX1 LDLRAD4 CAMK1D CARS2 PPP3CC PTPRC KLF13 AK5 HIVEP2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH PIP4K2A FOXP1 KLF13 RUNX1 LPP PITPNC1 SEMA4D TNFAIP8 ARHGAP25 AKAP13 HIVEP3 MAML2 BCL11B FAM19A2 CPOX FAM107B LEF1 GSK3B PATL2 GRK5 DNMT3A RBMS1 SLC38A1 PXYLP1 SPTBN1 ZFP36L1 MBP CCND3 AC016831.7 SERINC5 SEPT9 RERE ANKRD44 ARID5B AKNA NEAT1 FAM117B STIM1 GSE1 ARHGAP15 AGO2 DEAF1 RHOH LINC00598 NDUFV2 APBB1IP PLCL2 SLC35A2 KSR1 ENSA GLS IKZF1 TBC1D5 KLF7 RIN3 SEC22C TNRC6B CDC14A LMO4 AL138752.2 ZBTB16 TCF20 ASAP1 PLCL1 ARAP1 TIAM1 SFR1 PPM1L MCCC2 THRAP3 FYB1 TSPOAP1 MGAT5 DDX3X CDH23 GPR150 C15ORF53 STAG1 CBLB NCR2 DRAIC HNRNPUL1 MICAL1 PPM1B OGDH CELF2 SEPT7-AS1 APOLD1 FKBP15 PDE4B IGF1R MOV10 TOX2 PIK3R1 CCDC88C LINC01934 TPRG1 TG RNF38\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HIVEP2 FAM117A CYTIP KLF13 TGFBR2 BCL11B IMMP2L FOXP1 TG RNF4 TSPOAP1 AL359736.1 TMEM131L SEPT9 ITPKB PTPRC ANP32A AC068896.1 PATL2 ELF1 HECW2 STAT1 PRKCH FYB1 TBC1D1 KLF9 STK17B PPP2R5C LINC01934 RASSF3 MBNL1 NKIRAS1 MBP GRAP2 RFTN1 IKZF1 FYN ATOX1 HNRNPU LINC01588 TIAM1 ME2 TFPT MLLT3 UTRN RBM8A INPP5A OGA INTS13 RHOBTB3 AL162377.3 ETS1 LIPA TRABD2A RFX3 ORMDL3 RBMS1 BACH2 PLCL2 PHF20 RELL1 LINC00598 AC058822.1 MPHOSPH9 SLC25A12 TSC22D1 AC009779.5 FNBP4 ITGA2 IFRD1 AL355315.1 EVL NFATC2 TCF4 AHR NIT2 EVI5 PPP2R2D DEF6 KIFC1 ELMOD2 TPM3 GPRIN3 SOS1 AC093010.2 LIN54 PDE7A DET1 MDC1 FKBP5 CARS2 RMND1 FHIT ULK4 PHF12 CCDC91 FOXO1 DCAKD SBF2-AS1 IL16\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TNFAIP8 FOXP1 LINC01588 TRABD2A MIR3681HG ARHGAP25 ITPKB RIN3 PREX1 HDAC7 ACOXL IGF1R NELL2 XPO1 IKZF3 LAMA3 SPAG8 SEPT9 LEF1 PRKCH MLLT10 AC010894.3 MAN1C1 PDE4B CLEC2D PIP4K2A SERTAD2 CCR7 C1ORF112 INO80B NUDCD2 NR3C2 EVL TSPOAP1 XYLT1 ADK STIM1 ST3GAL1 NEAT1 LINC01004 GRK6 DOCK9 RORA-AS1 LCORL AC016831.7 LINC01629 CCDC88C TRAJ28 AC024592.3 CAMK1D AL136962.1 PHYH ITK SAMD13 ANXA6 PTPRC ACTN1 STK17B CBLB AP000787.1 ESYT2 PPP1R16B GRAP2 AL138752.2 LINC01135 ANKRD44 HDAC4 LRBA INTS9 RAD52 YME1L1 CARS2 PATL2 ST8SIA4 ELMO1 OSBP AC011773.4 AMPD3 AC009185.1 RAP1A PRR14L KIF2A G3BP2 FAM160A2 ITPR1 ARID1B AMN1 FAM107B CDYL P2RY8 ZNF33A B4GALT1 EBF4 BCAR3 CDK13 CELF2 AC068896.1 JARID2 TBC1D14 PITPNC1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ELMSAN1 RNF216 FOXP1 BACH2 NCK2 HDAC4 RIPOR2 NELL2 TRABD2A NFE2L2 TBC1D5 ANKRD44 CCDC88C TNFAIP8 ST6GAL1 ACOXL LINC01588 CELF2 ARHGEF7 RASA2 CCR7 TNRC6B KLF12 AL355076.2 TCF7 RBMS1 MAT2B RUNX1 ETS1 PLCL1 ADAMTSL4 APBB1IP SSX2IP C3ORF58 PREX1 SEMA4D RAP2A PLEC PIK3R1 RASGEF1B PTPRC MGAT4A EPB41L5 GRIP1 IGF1R CAMK1D ZNF608 GRAP2 LRRC8C-DT ZNF831 AFF1 PRKACB AC099063.1 RREB1 SOD2 TRAF1 STK17B CASP8 RORA-AS1 LIPA LINC02416 LINC02446 PRDM2 GNAQ ZNF131 AC009126.1 RGS3 P2RY8 KCNJ10 PRKAG2 LBH RIN3 C16ORF72 LIN54 AC007728.2 UVSSA GATA3 RHOBTB3 PYM1 ABHD12 KLC2 PDCL3 ZNF414 LRRFIP1 EXOC2 KAT6B ARL14EP LINC01934 CD6 AP001972.1 RNF166 IQSEC1 PXYLP1 SBF2-AS1 RUFY3 TRERF1 MPRIP FHIT NFIA SLC6A6\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 LINC01004 HDAC4 RUNX1 LEF1 AC009126.1 AL359736.1 FOXN3 KIF2A PVT1 FYN TTC33 GRK6 LINC01588 C1ORF112 CDC42SE2 RIPOR2 ATP8A1 KLF13 ZBTB16 ST3GAL1 HIVEP3 PPP1R2 CARS2 DUS2 PLEC PLCL2 ANKMY1 RABL3 ZNF516 PRKRIP1 JARID2 EGR1 ITPR1 RPS6KA2 GRAP2 COA1 ARMH4 TIAM1 HIVEP2 TNFAIP8 PIP4K2A RERE ZNRF1 CDH23 ELOVL5 AKAP7 TOP1MT PPM1B ZCCHC2 RASSF3 IMMP2L MAD1L1 TRAF3IP3 ITK PATL2 BCL9 PRKCH LINC00649 NOSIP AC093010.2 SAMSN1 XYLT1 CROCC SMPD3 DRAIC SEMA4D AC004922.1 AC092803.2 AL133523.1 CSGALNACT1 STK10 TECR MSL2 RHOF UBXN11 KIAA2026 CCND3 IQGAP2 CFAP299 VIPR1 SCML4 IRAK2 RASA2 GGCT UXS1 AF241726.2 TOX2 MTMR4 PHF12 PPP1CA TIPARP PACS1 CASP8 TBPL1 RELA CD8A ATP6V0A4 TRIM9 RAPGEF3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH TRAJ28 UBAC2 PTPRC LCP2 FOXP1 CCDC88C CCND3 ITPKB AC009126.1 RASSF5 NDRG1 PAG1 RASA2 TBL1XR1 TNIK AKAP13 ARHGAP26 TNFAIP8 ZBTB8OS BCAR3 SERINC5 KLF13 ZFYVE28 RIPOR2 MIR3142HG GRK5 LINC01588 RAB27A ASAP1 SAMD3 FAM49B ARHGEF3 LDLRAD4 PTPRJ TGFBR2 TCF7 CPOX C6ORF99 ASCC2 NAA50 CACUL1 LINC01126 FBXW7 MXI1 CBLB NME7 ZSWIM6 AC025682.1 CELF2 EVI5 IFNAR1 CEMIP2 STK10 FYB1 HBS1L PTPN6 HIVEP2 NCK2 TBC1D2B PRKCB CROCC ARMH4 CSGALNACT1 THEMIS PNKP ETV6 NFIA ANKRD44 DRAIC GTPBP8 BTBD19 CIC ANKMY1 GTF2I SEMA4D PLEKHF1 AC007285.1 ELMSAN1 RASA3 VAMP1 AGPAT3 AC004596.1 PDE4B TRABD2A HDAC4 ELF1 LINC01135 PJA2 ACTB ARHGAP15 AC020911.2 TRIM8 ARHGAP45 PTAFR TTC39C CASP8 TSPOAP1 CAPZB SH3KBP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 CHD1 LTA TNRC6B APBB1IP IMMP2L AL359736.1 ARHGDIB CCDC88C PFKM GCA TEX2 GSK3A SUPT3H SEMA4D C3ORF58 IKZF3 MGAT5 DIAPH1 RNF181 NCOA2 SLC12A9 INPP4B MAPRE2 MRPL33 RUNX3 SRGAP3 STK10 FLVCR2 PRKCB ARPC4-TTLL3 BCOR PRKCQ KLF13 INPP5F NCK1-DT ZNF644 MAP4K4 RASA3 KIAA1211L RSBN1 SNRK HERPUD1 AC078923.1 RANBP10 EED LHFPL1 NOS3 SERF2 WISP1 MKL1 PATL2 SZRD1 LEF1 HIST1H2BC CLK1 ELF2 RYK PTMA ZBTB20 AL132671.2 HTT-AS RUNX2 NUBP1 GALNT2 MGST3 ATP6V1E2 CALD1 INIP YARS PRKCH AC020911.2 IKZF1 SERINC5 CBLB HK2 RAI1 POLR1C RHOBTB3 MAN1C1 ABR PDZD2 ICA1 TIAM1 PEX6 UTP6 ARID4B RASSF5 RPP38 PICALM LITAF UBE2D3 BRD7 CHD7 CENPL DENND4A YWHAZ SH2D3A HCG25 AC017083.3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LINC01934 LINC00598 IMMP2L BACH2 LEPROTL1 IKZF1 FYB1 PRKCH AKNA ARHGEF3 GSE1 CSGALNACT1 ACOXL TBC1D5 CELF2 LINC01588 MAML2 AKAP13 COA1 XKR6 RUNX1 AC016831.7 TNFAIP8 ADAMTSL4 UBAC2 DOCK10 AL359736.1 ARHGAP15 BCL2 LINC01135 FOXP1 TIAM1 RAD51B ZNF395 CGGBP1 NCK2 ZBTB7A BORCS5 STIM2 TTC7B GRPEL2-AS1 PSMA1 IQSEC1 ELF1 PCF11 STAT3 SERINC5 MBNL1 PRKCZ FYN KLF13 PTPRK TAF1 PTK2B TSPOAP1 ELMOD2 BIRC6 PHF19 LCP2 PDE4B ATP8A1 CDK17 AL392023.2 FNDC3A SUPT3H TNRC6B SLFN12L PTPRC DOCK4 ARHGAP26 USP4 TRERF1 PCAT1 GFOD1 ST3GAL1 DLEU2 AP001033.1 TBL1XR1 FAM192A BFSP1 ATP13A1 AC093010.2 NFIA PPP2R3B NRL COA7 AC009185.1 ZBTB14 FHIT PRR7 CCDC88C ATAD2 RNGTT RPS6KA2 PRR7-AS1 STRN CLTA SEMA4D INPP4A MCFD2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 RHOH FOXP1 ANKRD44 ARHGAP25 TIAM1 RBMS1 FYB1 BCL11B BCL2 TBC1D5 HDAC4 INPP4A UBAC2 ADAMTSL4 PRKCB BACH2 STIM2 AL359736.1 PRKAG2 AC016831.7 MGAT4A NLRC5 IKZF1 CDR2 AL451062.3 CCDC88C FOXN3 GATAD2A LINC00598 ELMO1 XYLT1 TMEM131L NIN PLEC MBOAT7 VPS13D EPC1 CHST11 ATXN7 CNOT1 MAML2 TRAPPC9 AHR NCK2 PRKCH CABIN1 OSBPL3 CAST TLDC1 CDC42SE2 ARHGEF7 ETS1 FBXL19 KLF9 LSP1 GLS SCML4 MIR29B2CHG LEF1 AKNA TSPAN14 PAG1 CIC PRADC1 LINC01588 RASA3 MACF1 RASSF3 PITPNC1 TRIO MALT1 RASSF5 AL138752.2 ST6GAL1 AC008629.1 ZC3H3 FYN DOK2 LINC02356 HOOK2 RAPGEF1 APBB1IP GSE1 STT3B MAPRE2 MTO1 ANXA6 SEPT9 PCSK5 EDEM1 TRANK1 TGFBR1 MIR181A1HG TSPAN5 FAM117B CROCC CBLB ATP2B1 CUBN\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 TIAM1 CYTIP DOCK10 PTPRC SFMBT2 RASSF3 ETS1 SEPT9 CCDC88C ANKRD44 CELF2 SMG6 NEMP1 PRKCH IGF1R TBC1D5 RUNX1 STIM1 STK24 UBAC2 LEF1 RNF216 LINC01336 BACH2 HBS1L DPP4 LINC00861 AC243547.3 TGFBR2 MGAT4A TM9SF2 PITPNC1 MPP7 TCF7 ITK CEP85L CD96 RUNX3 TG RASSF5 FLI1 AFF1 RIPOR2 JARID2 TRABD2A CAB39L CCND3 DEAF1 FOXO1 MYH9 MAMSTR CYTH1 ARHGDIB SOD2 EVL P2RY8 CCDC69 STK17B PIP4K2A PREX1 CD247 ZFP36 LINC00880 SPTBN1 ATXN1 DCAKD RGCC MSI2 CD82 IKZF3 BCL11B CIC STIM2 PPP1R18 AC012309.1 PATL2 GIMAP8 BCL9L UBASH3A KLF12 ST6GAL1 TMEM131L DCUN1D4 CAMK1D SEMA4D PVT1 NCK2 TNFAIP8 TSC22D1 MAML2 LPIN2 TRERF1 ST6GALNAC3 TOM1L2 NCOR2 ZNF808 ETV6 TTC33 GNG7\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 STIM1 IMMP2L HIVEP2 PVT1 SEPT9 LEF1 MAML2 RHOH ABLIM1 STK17B ZC3HAV1 TGFBR2 HAVCR2 TG DOCK10 BACH2 AC016831.7 RASSF5 LPP RASSF3 DNM3 THEMIS TMEM263 PATL2 MICAL2 CD47 MPP7 ADAMTSL4 LINC01588 RNF216 STK24 GRB10 ETS1 DUSP10 INPP4B PRKCH CD8A ABHD15-AS1 BCL9L LINC01004 MTR TIAM1 TBC1D5 AL163932.1 APOBEC3A FBXW7 CITED2 PTK2B LPAR3 ARHGEF3 ARHGAP26 PDE7A CCDC88C KANSL1 MAST4 LRP1 PRKACB PXYLP1 PLXNA4 CAMK2D POLG ALOX12-AS1 TMEM131L LDB1 VOPP1 LIN54 HECW2 AC012184.1 SERINC5 DDX3X GFOD1 SUN2 ARHGDIB AC004922.1 LRRC8C-DT COL23A1 IFNG-AS1 NLN DMAC1 TNRC6B MDC1 USP3-AS1 MFHAS1 FHIT PDLIM2 REST PCED1B PRKCQ IGF2R CARS2 UBE2D2 CAMTA1 CAT UMAD1 SLC16A10 CALCOCO1 TPRG1 TNKS PSD4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CCND3 CD247 FYN RIN3 RORA-AS1 ANKRD44 PDE4B MBNL1 ITPKB SORL1 LCP2 PIP4K2A RAPGEF1 TSPAN14 POLR1A RUNX3 RUNX1 ATXN1 PREX1 AC068896.1 SLC2A1 RHOH PTK2B B4GALT1 RIPOR2 SEPT9 TTC39C SMAD3 MICAL2 RORA ATG5 ARHGAP26 SCML4 SNTB1 PTPRC PITPNC1 AKAP13 MAST4 NRL AC016831.7 ARHGEF3 KCTD7 PRKCH DUS2 AC018647.1 FYB1 SYNE1 KLHL21 KLF13 OSBPL3 ANKRD11 PRKCA ETS1 LPXN POC1B ARHGAP25 MAN2A1 LBH STAG1 IQSEC1 LINC01137 G3BP2 UTRN PATL2 RAP1A UBAC2 FLI1 ITK P2RY8 CDK13 AC009126.1 CYTIP KDM2B CBLB DOCK9 PIK3R1 FNDC3B OTULIN NID1 SPEF2 ELMO1 MAML2 GNG7 HDAC4 TCF7 ZFP36L1 GLIPR1 KLF11 MGAT4A ARHGAP15 RET ST8SIA4 CDC42SE2 RAB27A MRPL33 MIR3681HG MTSS1 ATG7 EVL VAV3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH AKAP13 ARHGAP26 PDE4D CYTIP RASSF5 ITK HDAC4 ZBTB16 AKNA PPP3CA AL359736.1 ARID5B NFATC2 MVB12B PREX1 ARHGAP25 SNTB1 MGAT5 MYH9 LPP RPS6KA2 SMAD3 BCL11B UST FUT8 LRP2BP FYCO1 TCF7 C6ORF62 CD247 MGAT4A PAG1 RBMS1 HIVEP2 CDC14A RAPGEF1 AC068896.1 FAM107B FOXP1 TSPAN14 PITPNC1 ST6GAL1 XYLT1 NFIA LCP2 BRD7 LINC01431 TSPOAP1 SOD2 AC016831.7 FYN AL357060.1 SCML4 ATXN1 SLC38A2 PPP2R2B ZNRF2 AL591885.1 NCOR2 LINC01126 SEPT9 CDKN1B PTPN22 STK40 IL2RA AC006369.1 ERCC1 TBC1D5 GTDC1 STIM2 TNFAIP8 NCALD UTRN SMARCA2 PLCL2 AGFG2 CBLB CAB39 ARHGEF3 CD96 STAT4 AC068724.3 ZMIZ1-AS1 GATAD2A PRKAG2 HECW2 ZNF516 RNF111 IKZF3 SESN1 LINC00299 TC2N IL21R MBP FKBP5 ZCCHC2 TGFBR3 TSPAN5 EHD4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 AC068896.1 RUNX1 RORA-AS1 MBP FYN AKNA ATXN1 IKZF1 UBAC2 AKAP13 BCL11B TSPAN14 KLF13 MTO1 RUNX3 BORCS5 RB1 MIR3681HG PIP4K2A PRKCH UTRN CCDC88C RHOH STAT4 IQSEC1 ANXA11 SMAD3 NCK2 TRIM8 HIST1H2BC CDK6 TBC1D1 ITGAE AC022075.1 MICAL2 RIN3 MGAT5 OXNAD1 CBLB STK10 HDAC4 ATF7IP SEMA4D RORA ABLIM1 ARHGAP15 ITK PLEC ATP2B4 LINC00861 STK17B CD58 TPRG1 GPR68 LINC01588 AC010894.3 AC016831.7 SYTL2 CHST11 AC093010.2 MCTP2 LINC01934 SCML4 IRAK2 IFNG-AS1 SLC6A6 PRKCQ CEMIP2 LPP ANKRD44 DDX3X JAZF1 ARL4C LBH GTPBP6 EHD1 PPP2R5C LFNG PPP1R21 ETS1 SNTB1 NEAT1 BACH2 C6ORF106 JMJD1C IQGAP2 UBXN11 STK24 CELF2 HIST1H4B HIVEP2 HERPUD2 MED12L MGAT4A CYTH3 PTPRJ RAPGEF1 ARNTL ACOXL\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 RUNX1 CCDC88C PRKCH LINC00649 ITPKB FOXN3 AC068896.1 UBAC2 GPR68 KLF6 RAD51B SGMS1 AL390957.1 RORA-AS1 AKAP13 IKZF1 PTPRJ RIN3 TBC1D2B NFATC2 TRERF1 APBB1IP TBC1D5 FOXP1 RIPOR2 RB1 DOCK8 KIF2A UTRN CBLB MAML2 KLRD1 DNM3 MGAT5 PPP2R5C AL160408.2 HMGB1 PREX1 AL031056.1 KLF13 ARHGEF3 FGD3 P2RY8 ZBTB16 CRYBG1 HDAC4 BPGM MSI2 DLGAP1 LDLRAD4 LCP1 ZCWPW1 SLC25A26 RPS6KA2 DYM CD96 AL591885.1 SEPT9 CRTC1 ARSG YTHDF3 LBH AL356234.2 AC008897.2 ECE1 STIM2 ARMH4 TG AL023755.1 FYN MCF2L2 ATG5 CD82 FRYL AC093010.2 CCR2 LFNG IKZF3 TCTN1 HECW2 CCDC12 CNOT3 IQGAP1 TIAM2 PTPN6 CYTIP BCR AC079313.2 ATXN1 CAMK1D RERE CADM1 ITK ATXN7L1 FAM117A UBASH3A ST8SIA1 IQSEC1 MEX3C\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ANKRD44 CAMK2D ARHGAP26 TMEM163 STK10 NFKBIA SEMA4D HMSD AC010894.3 MEX3C IFNG-AS1 LFNG CD2 ZMIZ1-AS1 RASSF5 KANSL1 N4BP3 CYB5R4 RBMS1 HECW2 AL121594.1 SETBP1 PIK3CB MAN2A1 CBLB PIP4K2A LRP3 FOXN2 CD28 METTL21A ARHGAP15 JAK1 NFE2L2 MXD1 AL031599.1 IQGAP2 RTTN PSD4 FYN GMDS ENTPD3-AS1 KIAA0391 CD79A GALNT1 ZNRF2 UBAC2 ARSG AC093627.5 CARS2 DNAJB14 INTS9 ASF1B RPA2 FBXO32 MGAT5 DYNC1I2 HINT1 EIF4E1B ARF4 CCDC126 GLS EMC2 UHRF2 STAT4 HPCAL1 FAM117B RAPGEF1 KLF13 PLXNC1 SRCIN1 USP3 CMIP NUDT18 MAP3K20 RNF170 TTC13 AC243829.4 FOXO3 IKZF1 DNPEP AL035530.2 OSTM1 DNM3 FAM177A1 CDYL GRK5 ATF2 NARS LINC02288 GAS1RR TRIM24 N4BP1 GPLD1 GAS7 HIF1AN AC016831.7 LINC00861 TUT4 PLEKHF1 RPS6KA2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 PIP4K2A PITPNC1 AKNA CBLB PRKCH HIVEP3 CCDC88C LPP LINC01126 FOXP1 CRYBG1 TRABD2A STK10 ATXN1 PRKCQ RAD51B DRAIC AKAP13 LCP2 RIPOR2 CARD19 CRADD CCNG2 ITPK1 TMEM116 GRK6 KLF13 CD226 DNAH2 GNG2 CPOX HIVEP2 AC008764.1 GRAP2 TRAJ28 EVL SYNCRIP FAM49B RUNX1 AGPAT4 FGD3 ARHGEF3 ZFYVE28 LCP1 CDC14A DDAH2 JMJD1C SNTB1 STAT4 UCP2 IQGAP2 FAM117A IKZF1 ZNF831 AC068896.1 RASSF5 GPRIN3 AC009126.1 PATL2 INPP4A PHF19 ZEB2 STPG1 ENTPD1-AS1 PDE7A ATXN7L1 RORA LINC02328 AL163932.1 MAP4K4 NAPA ASTL SIN3A AC025283.3 FAM107B PPP2R5C ST3GAL1 LINC01004 CHST11 AGBL1 PTK2B MCF2L2 PWWP2A ENO1 PTP4A1 ITPKB CELF2 ATG5 MTSS1 CCSER2 TNFAIP8 LINC00598 AL359736.1 PPP3CA UGDH CD247 PCAT1 TOMM70 TTC33\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 CELF2 AKAP13 MSI2 PRKCH RIPOR2 SEPT9 LBH TIAM1 BCL2 RASA3 HIVEP2 AKNA MAD1L1 ARHGEF3 MBNL1 CDC14A BACH2 IKZF1 MTSS1 RUNX1 MACF1 ARID5B RBMS1 PPP1R16B MBOAT7 LINC01588 DNM2 TSPOAP1 PPP6R1 C15ORF53 NEAT1 HNRNPL RIPOR1 AP001107.3 ABTB2 HDAC4 BRF1 HMGB1 AL357060.1 KDM2B PITPNM2 FOXP1 CSGALNACT1 PAG1 PTMA AC009226.1 PIP4K2A IMMP2L HOOK2 FARS2 TBL1XR1 AC093423.3 BMF ELMSAN1 IQSEC1 HDAC7 AC010271.1 MAML2 MAPRE2 LINC00598 PXYLP1 SAMD3 ATXN1 MAP3K3 HIP1 HLA-DMA ARHGAP4 ZMIZ1-AS1 FKBP5 ACOXL KANSL1 LINC01126 SIK3 ECE1 ARHGAP15 PAQR8 MARCH3 SEMA4D EPHA4 TG LINC01431 ANKRD44 RAPGEF1 OSBPL3 ABHD15-AS1 MPP7 WNT10A NUTM2A-AS1 TNFAIP8 KLF13 VOPP1 MGAT5 SH3KBP1 TMEM123 CYP51A1 AOAH TOX LINC01934 GYPC\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH SEPT9 HIVEP3 ATXN1 UBAC2 AL359736.1 RUNX1 ZEB2 ATG5 PCGF5 FAM107B LINC00271 ARHGAP25 SIN3A STK10 FOXP1 RIPOR2 FYN SCML4 SAMD3 FOXN3 AP000311.1 LCP2 DNMT3A PTPRJ AL390957.1 BCL2 CCDC12 SEMA4D ICA1 AC020911.2 ARHGAP26 HDAC4 AC068896.1 PCED1B FAM49B MDFIC TSPOAP1 TNFAIP8 GAS7 HNRNPF RAPGEF1 PTPRC MYO1F MAP4K4 APBB1IP ITGA4 ZMIZ1 ATOX1 RAP1A CCND3 AP000295.1 SORL1 RALGDS MYO18A CBLB AL121748.1 IKZF1 SLC25A26 RPS6KA2 AP000787.1 BACH2 APOLD1 XYLT1 NCOA2 RBMS1 MBP FAM98A TBC1D1 LINC01126 ADGRG5 NR3C1 FBRS CDC25C MAP3K14 LPIN2 LINC00578 GSK3B ITGB2 KLF13 SH3BP5 CSNK1G3 ARHGEF3 ITGB1 CHST11 NEMP1 MAML2 LINC01934 AKAP13 PRF1 ACOXL TG GGA1 PLCL1 TRERF1 AL138720.1 RORA CDCP1 DRAIC AL357060.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CD247 ARHGAP25 RIN3 PREX1 AC068896.1 ANKRD44 PIP4K2A ARHGAP26 AKNA FYN CCDC88C PRKCH AC016831.7 NCK2 CELF2 AKAP13 ASAP1 SMAD3 ITPKB RORA PLEK AL035530.2 AL355512.1 CDC42SE2 KLF13 NEAT1 DOCK10 BCL2 INPP4A ZBTB16 LINC01588 RNF216 TSPAN5 RASSF5 PATL2 GATAD2A ACOXL UMAD1 RUNX3 MEF2D JARID2 ARHGEF3 PTPRJ TTC33 TET3 STK10 LCP1 RIPOR2 MAPK1 SEPT9 ZNF365 MAP3K8 C2ORF42 UTRN ATP2B4 ETS1 STK39 SLC2A1 CYTH1 PTK2B TGFBR2 GPR68 STAT4 CCDC6 FOXP1 EIF5A ZMIZ1 CAMK1D KLF9 IQGAP2 DNMT3A RAPGEF1 NFE2L2 ARID1B GTDC1 ELOVL6 LITAF CFLAR FAM102B BBX SETBP1 SIL1 SESN1 CAPN2 ITPR1 CARD19 RAB11A UBAC2 AKT3 PTMA IL2RA AC093010.2 ATG5 DIAPH1 PPP2R5C STIM1 ZNF131 SH3KBP1 MLLT3 AP3M2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC068896.1 AKAP13 ARHGAP26 MBP ST3GAL1 IL7R PRKCH RUNX1 STK10 SCML4 LINC01588 RAPGEF1 HIVEP3 HDAC4 CDC42SE2 FYN ARHGAP25 ANKRD44 CD247 CASP8 CDH23 RIN3 PLXNA4 RPTOR FYB1 KLRD1 CBLB AC117394.2 SKI CD96 BACH2 PPP2R5C SEPT9 TRERF1 RORA-AS1 PIP4K2A ZNF609 ATG5 AC099673.1 JADE1 JMJD1C PATL2 NLRC5 CPEB2-DT PTPRJ PLCD1 TSPAN14 ZNF365 ADGRG1 CDC14A GTPBP6 KLF13 CLYBL STOM FOXP1 IQSEC1 RALGDS SMAD3 ZBTB20 NCOA2 AC016831.7 NR4A2 PRR5L KDM2B AUTS2 TBC1D2B PAG1 SEMA4D CMSS1 WWOX PRR5 IQGAP2 LPP SNTB1 FAM69A RIPOR2 SLC2A1 ADAM10 CARS2 PPP3CA ACOXL CELF2 RORA ELMO1 ZEB2 AL669918.1 GPR68 DENND4A IL21R AL035530.2 HNRNPA2B1 TOGARAM2 MAP3K3 DSE HMGB1 OGDH BORCS5 MBNL1 TG CDYL\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 IQSEC1 RUNX1 ADGRG5 OR6N2 RHOH RAP1A TLE4 JMJD1C PIM3 AC068896.1 HOMEZ MCM7 PRKN FHAD1 RASGRF2-AS1 HDAC4 AMZ1 ATG10 PPP1R16B SPAG1 RELB LINC01215 ARHGAP15 AC079950.1 MTO1 ERCC1 ITM2C IBA57 GALNT2 NR4A2 ANTXR2 TMEM245 AL138752.2 NFKBIA KRI1 CD82 ZBTB16 IFI27L2 BACH2 THAP12 SERINC3 TOM1L2 IL7R APBB1IP LYN RIPOR2 ARID5B CD96 LCP1 TBL1XR1 SLC15A4 SSBP2 CMIP B3GLCT GTF2H4 FAM85B AL078459.1 NUBPL PIP4K2A AC090527.2 INPP4A SMG6 FAM117A AL139412.1 PVT1 CTH ANKRD10 RUBCN DDX60L AL390957.1 PPP1R10 CRACR2A DNAJC15 CCDC88C NFYC ST3GAL2 KIF22 AC137810.1 TMEM131 ESYT2 TRAPPC10 AMBRA1 TFB2M BBC3 HECTD4 CD300A TRPM7 RASSF5 MTSS1 CARS2 DMAC2 CDV3 STAG1 HNRNPUL1 CHCHD6 PCGF5 IPO13 FAM102B ADAP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 ARHGAP26 PRKCH AC068896.1 LINC01588 PTK2B PTPRJ SEMA4D MBP DOCK10 ATXN1 HIVEP3 RPTOR ARSG CD247 DRAIC STAT4 SEPT9 TRERF1 KLF13 GRAP2 AKNA MSI2 ZEB2 C15ORF53 PIP4K2A ITGAE ANKRD44 GAS7 MACF1 CDC42SE2 NOP14-AS1 UTRN FAM129A PATL2 IKZF1 FYN MAML2 KCTD16 TNRC6B ITPR1 RAPGEF1 HMGB1 AC022126.1 MGAT4A LCP2 NCK2 LINC01004 NFATC2 MBNL1 RIPOR2 EBAG9 HOOK2 PVT1 PKIG ITPKB SPIDR TRAJ28 TSPOAP1 IKZF3 TGFB1 LPP TBC1D5 STIM2 SUSD3 CYTIP AL162377.3 DLGAP1 PITPNC1 GTDC1 PLCXD2 AKAP13 EPAS1 PREX1 SETD2 AL132671.2 AL357060.1 CIC C8ORF59 BCL2 AP000311.1 NF1 P2RY8 ELL TGFBR3 FOXO1 CFLAR SLC11A1 GRK5 MXI1 LSP1 RNF38 AL390957.1 SMG6 IQGAP2 AL359736.1 OSBPL3 NFE2L2 AFAP1 SMAD3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TSPOAP1 ARHGAP26 ELMO1 TRABD2A IKZF1 AC068896.1 ITK TNFAIP8 RIPOR2 SEMA4D UTRN RGS9 FYN STK10 PLXNC1 CD247 NEMP1 PRKCH CCDC12 NR4A2 LPP CYTIP RGCC AC008124.1 CCND3 MAML2 SERTAD2 RGS3 ZAP70 RBM6 ID2-AS1 TNRC6B ATG5 TBC1D8 PLXNA4 RORA ABCG1 GATA3 HIVEP2 RORA-AS1 CLIC3 MBD1 SPEF2 FAM107B NFATC2 ZBTB20 AC006369.1 CRACR2A RPS6KA5 PXYLP1 ARSD RARA SEC22C AK9 STAT4 GFOD1 GLO1 ST8SIA4 NT5C3A MGAT1 CDC42SE2 CIITA AL160408.2 BCL2 RUNX2 ZFYVE28 FHOD1 SRSF3 ANKRD44 ITPR1 PTPN6 NCOA7 CHST11 LPCAT1 C15ORF53 AC099063.1 FMC1 TEX30 ATXN1 GGA1 PPP2R5C LINC01126 ARHGAP15 CD55 CHI3L2 TECR RUNX3 C19ORF54 AKNA AC022126.1 TBC1D2B LINC00426 UMAD1 UBP1 MED12L P2RY8 SMG6 AC231533.1 AP000781.2 SP4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAD51B RUNX1 FOXP1 UBAC2 BCL11B PRKCH MTO1 UBXN11 CDH23 HCG25 C1GALT1 RPS6KA2 RMI2 PIK3R1 CASP8 ZNF609 SERTAD2 LDLRAD4 SEPT9 TNFAIP8 ITPKB DLEU2 PDE4B LINC01588 CNNM2 EARS2 RNF8 SORL1 EPC1 TFPT IGSF9B PIK3R5 AC005726.1 RORA UBASH3B SH3PXD2A PIM1 BNIP3L MAN1C1 AC068896.1 SARS2 NPAT ENPP2 AFAP1 AC137810.1 CELF2 PPAT GATA3 FAM49B AL365259.1 HIVEP2 CCDC88C ARHGEF3 ADGRB1 STK40 CHST11 SEC23B LEPROTL1 ZNF846 CD247 NFE2L2 PRKAR1B MAP3K3 SUCO KLHL21 ARHGAP15 RASSF5 UXS1 RPL13A CORO1A AXIN1 FAM76B CHD9 MAN1A2 STT3B XPO6 GNAI2 CSGALNACT1 PPP2R5C STK17B UMAD1 ABCB1 INPP4A COX11 PTPRJ AP005329.2 CD96 CHMP7 FNDC3B ST3GAL1 PTK2B GPR68 SERINC5 GPRIN3 AC011498.1 PCNP CATSPERG ELF2 AL031599.1 RPTOR\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 AKAP13 PRKCH ETS1 AKNA MBP RPS6KA2 TNFAIP8 FAM49B AL359736.1 FAM107B IKZF1 LINC01588 RASSF3 KLF13 JMJD1C UHRF2 ARHGAP26 AL023755.1 SLC25A26 ZEB2 LBH CD226 KLRD1 FYN ATXN1 RUNX3 ARHGAP10 MBNL1 BICRAL SPIDR RASGEF1B ZBTB2 FYCO1 UBE2D3 PPP2R5C MAML2 PRR5L ITGAE CD247 DNPEP LITAF PRKCQ ASTL PCED1B EVL SETBP1 ZBTB20 AC008124.1 ZNF365 CHST11 AL355512.1 CADM1 SCML4 NFATC2 AC009126.1 PIP4K2A LINC00598 SEMA4D NPAT ABHD15-AS1 DLEU2 LMAN1 MAN1A2 CDC42SE2 CYTH3 STK10 MTO1 ARL4C DUSP22 PPP1R16B AHR TRERF1 ITPKB RIN3 TMEM131L IL7R DGKD ATP2B4 NR3C2 TSPAN5 LINC01004 PATL2 ITPR1 LIPA SERTAD2 COQ10B MXI1 JARID2 RABGAP1L KIF2A ST3GAL1 OSBPL3 FOXP1 CASK TNIK HDAC4 MYOM2 ZBTB7A TRAPPC10\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TNFAIP8 KAT2B SGMS1 CELF2 TPRG1 CTSC ARID5B LINC02068 ZMIZ1 AC099673.1 AHR CAMK2D OTULINL STK17B AP000787.1 HIVEP2 ATP8A1 KLF12 SPIDR GALC RGCC MTO1 KDM2A AL031599.1 MCF2L2 NAA16 TBC1D5 STK32C MBNL1 SEC22C TOMM7 PNPLA8 NIN PLRG1 AL359736.1 AC078883.1 QKI TSC22D1 PDCD10 VAV3 CHIT1 NEK7 NFATC2 NIPBL PHF19 LTBP1 APP AL139807.1 SSBP2 AC007384.1 LINC00850 PLXNC1 GBE1 TTTY15 ST8SIA4 HNRNPK ATP5PF SGK3 ENKUR TMEM131L CD96 DNM3 CUBN C21ORF91-OT1 AC078923.1 MYBL1 ICOS PEX2 RASGEF1B IRF2 RPS6KA2 DIAPH1 INPP4B STARD4 VCPIP1 AKNA C2ORF76 AC035140.1 DHFR RAB27B MAN2A1 LINC01655 ERN1 AL359710.1 RHOBTB3 ZHX1-C8ORF76 ZCCHC2 CCDC47 LINC00862 DCUN1D4 VMP1 CASP1 SLC39A10 CYTIP MAP4K3 TEX10 PKN2-AS1 DOK2 CEMIP2 CLK2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH AKNA RUNX1 LINC01004 MACF1 BCL11B RUNX3 AC018647.1 SEPT9 PIP4K2A AOAH HIVEP2 PTPRC TRERF1 ZBTB7A SCML4 FYN CCDC9 TNFAIP8 ETS1 LMO4 PNKP RNF44 DLGAP1 IQSEC1 FAM118A LINC01126 AC093010.2 CBLB DSE CBFA2T2 AGPAT4 CCDC88C PPP3CA PLAC8 RPTOR RUBCN JOSD1 HNRNPC BHLHE40-AS1 CBX7 RPL7L1 LYST AC016831.7 FYB1 TRAJ28 BCAS3 ASNSD1 TGFBR2 ZNF708 RORA-AS1 C1ORF174 PEX14 IKZF3 CROCC FSIP1 HNRNPA2B1 PREX1 CDK6 SNX9 LCP2 TGFBR3 TNRC6B PPP1CA EIF4G3 C3ORF58 ECE1 PIK3CD AHNAK PCED1B DIABLO UBAC2 ELL MNT AC069368.1 ARHGAP25 GNG2 ANKRD44 TMEM192 SUN2 FYCO1 TBX21 CMIP ITGAE ARID1B PPM1L TRPS1 ARHGAP26 CANX IVNS1ABP AC068896.1 REEP5 GNA13 XPO6 QKI PRKCQ ABHD15-AS1 LINC00237 EML2 RAD51B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CD247 LINC01126 FOXP1 PIP4K2A RIPOR2 ACOXL RAB27A JMJD1C TRAJ28 RUNX3 RORA SUCLG2 ATG10 TESK2 ARHGAP15 CDH13 AC093827.5 PRKCH RIN3 OSBPL3 UST PLCB1 HNRNPA2B1 ANKRD11 AC069368.1 CBLB FYN ACSF3 ATXN1 USP25 SEMA4D ENO1 DLGAP1 HIVEP3 CABLES1 GLIPR2 AHR CMIP CSK CDK6 FYB1 AC068896.1 PRKCQ SPIDR BCL3 OXNAD1 CPLANE1 ZBTB20 LBH MAP3K3 TRERF1 SLC26A2 TRANK1 SNTB1 GPAT3 RB1 TBKBP1 AC020743.2 MSI2 MGAT5 AC022126.1 SUB1 ANKRD44 TRAPPC3 ARHGAP26 STIM1 CCDC186 FRMD4B PTPRJ GAL3ST3 RNF111 CDH23 SETBP1 AKNA ARID5B MBNL1 GLIPR1 SH3KBP1 RAP1GAP2 MYO18A AC002310.2 AP000424.1 HOOK2 WDSUB1 FMNL3 P2RY8 FRYL NLRC5 POLR1A PABPC1L TNRC6B ITGBL1 PVT1 CLIC5 TAGLN2 SBNO2 FBXW11 KLHL32 CCDC12 HDAC4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 RIPOR2 PREX1 CDKN1B ANKRD44 ATXN1 FKBP5 PIP4K2A IKZF1 ELL IQSEC1 RABGAP1L AC068896.1 MKLN1 RPTOR ELMO1 ST3GAL1 CDK6 SEPT9 TSPAN14 RUNX3 ANKRD11 FAM49B ARID5B AC016831.7 SERTAD2 GATAD2A PCED1B TRAJ28 LCP2 CD247 KLF13 GNG2 SUMF1 CEMIP2 BCL2 BORCS5 PATL2 AC087500.1 TMEM241 CASP8 KLRD1 NFATC2 ITPKB ACOXL AC079313.2 CD226 ARHGEF3 NDC1 JARID2 RUNX1 ATP6V0A4 INPP4A DLGAP1 AKNA IL7R CCDC88C PRKCH NCOA2 BCL6 UBAC2 NR3C2 HIVEP3 BCL11B MBP XYLT1 RB1 DUSP22 AOAH ITGAE FOXP1 LINC01588 BTBD11 NCK2 STIM2 KIAA1551 PLEC SH2D2A AL357060.1 AL160408.2 PITPNC1 PNPLA8 TNFAIP8 ST7L HCG14 FYN ATP2B4 LINC01934 PRKCB PTPRC SPIDR HIST2H2AC MMP24OS VAV3 DERL3 P2RY8 SLC6A6 UBXN11 STK17B TGFBR3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 PRKCH HIVEP2 AKAP13 PIP4K2A TNFAIP8 RUNX1 PTPRC TSPOAP1 RAPGEF1 ATXN7L1 STAG2 RIPOR2 HPCAL1 HDAC4 STIM1 IQGAP2 ST6GAL1 RARG LEF1 AC010894.3 RERE LTBP3 PIM1 SEPT9 CSGALNACT1 FAM107B TBL1XR1 PRKCB FBRS EIF2AK3 TBC1D5 DNAH2 LPP OTUD5 CCDC88C STIM2 UMAD1 GRK5 ETS1 SSBP3 NDUFV2 PRKRIP1 NEDD4L FCMR SEMA4D CRYBG1 SVIL MAML2 PREX1 RAD51B XYLT1 FOXP1 AMPD3 ITGA6 TIAM1 TPRG1 MSI2 AL359736.1 STK10 SIN3A AL136962.1 KLF7 PVT1 LINC01588 CPOX ECE1 ANKMY1 ST3GAL1 MBP RASSF3 LRRC23 FRYL HOMEZ AGTPBP1 PRRC2B PHLPP1 G3BP2 ADGRG6 PCF11 RPS6KA2 ZSWIM6 ACIN1 LINC01934 ESYT2 ZFP36L1 CEMIP2 BICDL1 MIR3681HG CKS2 GRK6 CGGBP1 RASGEF1B ZC3HAV1 CLEC16A SERINC5 FKBP5 AL356234.2 AC116366.3 ELOC\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAD51B IKZF1 ITGAE AL359736.1 AC068896.1 ANKRD44 TNFAIP8 PVT1 LCP2 ELMO1 RORA-AS1 LINC01588 BCL11B TRERF1 CELF2 CCDC88C RPTOR AC010894.3 ATG5 LINC01126 PRKCH C15ORF53 PARP8 ACSF3 PTPRC HECW2 GATAD2A DHRS3 SETBP1 RFTN1 GLIS1 UBAC2 TBC1D14 FSIP1 STIM2 ZBTB16 ARHGAP26 HIVEP3 AFAP1 MIR3681HG GRB10 CDKN1B OXNAD1 AKAP13 FNDC3B ETS1 PITPNC1 TBC1D5 RAPGEF1 TAF1 ZFP36L1 RUNX1 MICAL2 PNKP FOXP1 PSTPIP1 GNG2 LINC00598 RBPJ BCL2 MSI2 CD247 SPIDR PTK2B RASSF5 INTS9 SORL1 ESR2 CHST11 MRGBP AL390957.1 HNRNPA2B1 ITPR1 CD226 NFATC2 PPP2R5C NR4A2 SRPK2 ZEB2 CNOT6L HCG17 RCOR1 MIR3142HG DNM2 PNKD STAT4 RORA RIPOR2 UPP1 CBLB PPM1B RALGDS MGAT5 OARD1 PREX1 CAMTA1 BCL2L1 TRABD2A SEMA4D FOXN2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH ARHGAP26 AKAP13 AHR KIAA0232 KAT6B IQSEC1 VMP1 RASSF3 RUNX2 PTK2B ARHGAP25 CDC42SE2 SYTL2 LINC00598 AL591885.1 RNF165 DNASE1 MAMSTR PKM ZNF331 AC008105.3 ATXN1 AC117394.2 TIGIT SAMD3 EPC1 ST3GAL1 MKLN1 SEMA4D TBC1D5 FNBP1 AC010894.3 BCAR3 RASA2 CRY2 SEPT9 MAP3K3 LMBR1L MXD4 THUMPD3-AS1 SMAD3 VDR EBNA1BP2 FOXN3 BCL9L GSE1 PLCL2 RGS12 TMEM120A CPEB2-DT AC093627.5 NELL2 MSL2 MKNK2 POC1B LINC01934 RARA CD226 TNFSF8 CHST11 SMIM3 MAML2 ARHGAP19-SLIT1 RUNX1 ATG5 INSIG2 HIVEP2 UBXN11 UST TNK2 SNRNP40 CCNT2-AS1 SELENOI ISY1-RAB43 SAP130 PWWP2A FLYWCH2 ARRDC1 AC087645.2 HERC6 RABGGTA BCL2 PACS1 ECHDC2 ABL1 SNX9 AC009226.1 GRAMD4 SMIM9 TRMT10A MTIF3 DNM2 C21ORF91 ARF6 PCGF5 TALDO1 PRF1 AC069368.1 ANKRD23\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MBNL1 AC068896.1 FNDC3B FOXP1 TGFBR2 ATP6AP1L GRAP2 BCL2 CMIP DOCK10 AL355512.1 TBC1D2B RUVBL1 AC006369.1 PIP4K2A MYO1F HECW2 ADCY7 FNBP1 JMJD1C MED12L TRAF1 MCTP2 BRD7 GSE1 CELF2 SLC25A26 GLG1 USP34 CD226 PLCG2 AL136985.3 FAS PDCD1LG2 CBX7 PCGF5 AC022558.2 PUM3 KLF6 TRAT1 SIN3A TMEM38B ISG20 AGBL3 TNFRSF1B SLC6A6 GTF3C3 ADPGK AZI2 PANK4 RAC2 ME2 OSBPL3 FRMD4A TNFAIP8 TET3 RIPOR1 TOR1A ZMYM2 NFATC2 RUBCN ORC2 ISPD ZNF397 SMAD7 FAM102A NFE2L3 INPP5K AC076966.1 WASHC3 ANKRD28 UTRN PHYH ZBTB38 ZNRF1 TRIM14 RALGPS1 SIDT1 PTP4A2 TCTN3 GCNT1 TBC1D1 LUZP1 NBAS CYSRT1 GPR107 ALCAM MYH15 OXNAD1 SFMBT2 PDCD10 AL392023.2 TUT7 ZNF438 LINC01358 LRRC47 UTP4 GRK5 SART3 F8\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: C21ORF58 FARSA TCP1 STAP2 SNX6 PIM1 DACT3 AC034231.1 CNOT3 CASP9 MIDN ZNF558 AAK1 ANKRD27 DCLRE1A SLC11A1 HNRNPA0 SRF HIF1A-AS1 FLI1 CLN8 DYRK3 SNX8 KIF22 BCAR3 RPS3A CCDC9 PHF23 FKBP15 PXYLP1 ERN1 AC001226.2 ZNF575 CACNA1C ATXN1L TOMM70 APBA3 BCL3 MAP2K2 GRPEL2-AS1 LCORL NUDT16L1 DOCK6 VPS26A AC005523.1 IFT81 FBXO31 TADA1 AC008440.1 ARL4C AC107214.1 ARPC5L EXOSC1 CYSRT1 LPXN TGFB1 AC025682.1 IFT57 MARK2 UBALD2 MCRIP2 MTMR4 IGSF9B AC010271.1 VMA21 BOLA3 HSP90AA1 NOL4L PRKRA RGS9 UHRF1BP1 HSPH1 SF3B6 GRIN2C TUBB4B TIMM22 RAD52 ATXN7L3 BCORL1 RHOG TC2N PXN-AS1 RRAS ZNF599 NFIC MRPL24 NIT2 CCDC12 SMARCA4 NR4A1 AC020911.2 TAF6L SIK2 ZNF70 KIAA0232 STK32C PABPC1 MYO19 ERGIC1 ZNF7\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH AC016831.7 RAPGEF1 ARHGAP26 FYN RORA-AS1 FYB1 IKZF1 RAD51B PIP4K2A CD226 AL390957.1 PLXNC1 NCK2 PTPRC CD96 FOXP1 HIVEP3 UBAC2 TG UBP1 FAM117A AC068896.1 ANKRD44 MTSS1 SLFN12L MCTP2 MBNL1 SYNE1 LINC01588 CCDC88C TNFAIP8 PPP1R16B KLRD1 UMAD1 ICA1 PDCD10 LYST CDK6 NCOR2 TNRC6B NEK7 RIPOR2 UBASH3B BCL11B SCML4 CELF2 GNG2 UBA3 NSD3 STAT4 ARHGAP15 JAML GASAL1 SLC38A1 TRAJ28 SYNJ2 PARP8 PRKCQ TMSB4X VMP1 LIPA NCOA2 WNT5B HDAC4 MAPK1 RIN3 CPOX CCNG2 LINC01934 TCF7 STT3B FBXW7 ARMH4 CDKN1B RASSF3 AHNAK POC1B UBE2D3 EXOC4 PATL2 ST8SIA4 AC007384.1 ETS1 ARHGEF1 ANKRD11 KLF13 MYH9 RUNX3 NFATC2 UPP1 S1PR1 CYTIP TGFBR3 AKNA RNF4 CHST11 PIK3R1 RFTN1 GPBP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: KLRD1 BCL11B ARSG LINC01588 ANKRD44 RUNX1 ABLIM1 SAMD3 LINC00426 CASP8 AHCYL2 IKZF1 GCH1 ATXN1 TMEM173 ANKMY1 SYTL2 RASGRF2 APBB1IP CDC14A PHF19 PRKCB TMEM216 RAB27A ARHGAP26 GNG2 LEF1 ZBTB20 ME2 AL034549.1 CAMTA1 MAPK1 PNKP MIAT CACNA2D2 DGUOK-AS1 FBXL17 ANKRD46 BTN2A1 NEMP1 HNRNPUL1 LDLRAP1 TMEM256-PLSCR3 CHKA PSMA5 SH3BP5 PDXDC1 YIF1A PPIL3 AC005523.1 UBASH3B AC109826.1 MBOAT7 SSBP2 MKNK2 MBNL2 NKIRAS1 SPNS1 UBXN11 LPP CCR3 KLF13 RPTOR MCFD2 AC011603.2 ZNF681 SASH3 FOXP1 AL355916.3 PLEC CHST12 PTK2B P4HTM LINC01934 FBXL19 ARHGAP15 CATSPERG RMI2 SOAT1 ZRANB3 SRSF5 LTBP2 PRKRIP1 C1ORF112 ATG5 IL5RA CLYBL TCEANC C1ORF141 NCALD ZNF609 BORCS5 DUSP10 FAM85B RAP2A PTPN22 FAM177A1 SLC6A6 LINC01132 AC243829.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 KDM2A IKZF1 AC068896.1 ARID5B AC016831.7 ATXN1 CBL PTAR1 PCED1B ZBTB20 AKNA SSBP3 STIM2 RIN3 RASSF3 TMEM254-AS1 RNF7 PFKFB3 RPS19 SFPQ INTS4 CELF2 ARHGAP25 MYH9 SH2D3C CAST UMAD1 TTI2 RUNX1 PIK3R1 JARID2 CEMIP2 YWHAG JAZF1 PLEKHG1 FAM107B SETBP1 IL16 MDFIC CD58 TSEN2 ASH1L RFX3 FYN CLEC2B ZNF628 EPS15 SESN1 AL390957.1 ELOVL6 GSTO1 HDGF TBC1D2B LIPA CDC73 CCDC88C E2F6 AL162377.3 AC079313.2 CAMK1D ZBTB22 PRKCH CNIH1 LYPD3 NAA50 FAM98A SUPT3H RPS6KA2 VPS4B CHURC1-FNTB GNPNAT1 PTPRC SLC16A7 CPNE8 AC025283.3 AC008124.1 TMEM14B AL691442.1 HECTD1 BCOR ZNF639 FASTKD1 FCMR TRIM44 PRKRA NFATC2 MGAT5 RBM17 CRTAM PAG1 TRERF1 RAD9A MCM9 RAPGEF1 GFOD1 SGMS1 EPHA4 TRA2B ATAD1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 RUNX1 ST3GAL1 AKAP13 ANKRD44 ATG5 HMGB1 FOXP1 ARID5B SPIDR DUS2 SEPT9 PPP2R5C CD247 LINC01588 IQGAP2 PIK3R1 ZNF365 STK17B AK2 PRKCH CDH13 LEPROTL1 TRERF1 HIVEP3 ZBTB16 GDPGP1 RPN1 RASSF5 LINC02384 TBC1D5 RAP1A QKI CCDC12 RORA C12ORF75 AC068896.1 AC016831.7 IQSEC1 SMG6 RAD51B ATXN7L1 ABLIM2 SNTB1 CD47 SNAP47 RNF4 UTRN CDC14A PIP4K2A AC010894.3 CELF2 LGR6 FYB1 NCK2 RIPOR1 AKNA FSIP1 SETBP1 SLC12A6 CCND3 ZNF831 MYH9 KLF13 PTPRC CTIF OXNAD1 CYTIP AC020911.2 ATG16L2 KAT2B ARSG CADM1 LINC01126 GADD45A TPRG1 FAM49B TMEM116 GNB2 RIN3 NPAT CABIN1 SP4 PMEPA1 LPCAT1 RPTOR NEMP1 SPAG1 RAP1GAP2 MED12L LIPA SLC25A26 DOCK10 SYNJ2 DGKZ RORA-AS1 ATP6V1E2 TGFBR3 NR4A1 ZEB2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LCP2 RPS6KA2 RUNX1 GRK6 SEMA4D AL390957.1 PRKCQ ARHGAP26 LINC01588 TRAF1 PIP4K2A BCL2 CST7 IKZF3 PRKCH RARA SEC31A AOAH ZFP36L1 TNRC6B AKAP13 TBC1D2B ELMSAN1 ARHGEF1 ITPKB NCK2 GNG2 FAM49B CBLB H3F3B NLRC5 TOP1 CIC IGF2R AP000787.1 PATL2 CFLAR PACSIN2 CCDC69 AP000311.1 HIVEP2 FOXN3 LRRFIP1 SARDH MCUB SH3BP5 PLCB1 SEPT9 TBC1D5 PPP2R2D GMFG CAMK2D TRANK1 CDK13 ZCCHC2 IL10RA TSPOAP1 RASSF5 B4GALT1 GRK5 ANO10 MAML3 DCTN4 AP000820.1 STIM2 PLEKHA4 AHNAK CAPN2 AP005329.2 DLGAP1 LINC01135 UBAC2 ANKRD44 RNF44 TOMM40L CCND3 LINC01655 ETS1 RPTOR POU2F2 AC027779.1 ABCB9 CDK19 LFNG GAS5-AS1 CXCR4 BHLHE40-AS1 ARHGAP25 AC068896.1 DOCK9 KLF9 CCDC88C NOSIP PAG1 ELMO1 TG SPIDR OSBPL3 MBP DRAIC\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 ETS1 ARHGEF3 PTK2B FOXP1 PRKCH RHOF AKNA STK10 ARHGAP25 NFATC2 ATG5 AL390957.1 AC010894.3 LINC00598 AC068896.1 LINC00649 ARHGAP26 AUTS2 SCML4 CCDC88C RPTOR NEAT1 SETBP1 KLF13 FLI1 IQSEC1 LRCH1 HIVEP3 RIPOR2 CCND3 MYH9 CHST11 PATL2 IKZF1 AKAP13 SPIDR CELF2 SLC2A1 TMEM116 TGFBR3 GSE1 LPP AL359736.1 GFOD1 TTC39C RAD51B TRERF1 OSBPL3 HIVEP2 RHOBTB3 S1PR1 PRKAG2 LINC01588 RAB27A AC107375.1 CBLB VMP1 LEPROTL1 EPHA4 ARHGAP10 PIP4K2A BCL2 CDC42SE2 SMPD3 CAMK1D LMTK3 FNIP2 PRR5L FYN DNMT3A HIST1H1B USP39 RALGDS ARHGEF1 FGD3 DYRK1A KRI1 AL356215.1 FAM167B AC006369.1 PNPLA8 MIA3 PAG1 ZMIZ1 PIK3R1 SUPT3H PIGV ZFP36L1 PLEK AL160408.2 SNTB1 BACH2 SLC25A26 IKZF3 CDK6 AC022075.1 MNT PRRC2B PPP3CA\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPS6KA2 PRKCH SEPT9 AC016831.7 ANKRD44 MAML2 AC068896.1 ARHGAP26 WWOX TGFBR3 PTK2B ZYX ANKH BICDL1 IKZF1 RAD51B RUNX1 GAS7 PIP4K2A EFNA5 LZTFL1 EPM2AIP1 SIGIRR NR3C1 ERBB3 LPP FYCO1 KLF13 STK17B KALRN OSBPL3 SOD2 AC009126.1 ZNF652 PTPN2 TMEM150B KSR1 ARHGEF3 AC093010.2 SYNJ2 BCL2 WDR1 LINC01980 FNDC3B HIVEP2 AC078923.1 LINC01588 ATXN1 MACF1 CFL1 MAN2A1 RASSF5 NFATC2 TRG-AS1 NT5DC3 CCDC69 ZFC3H1 FAM117A AL160408.2 UTRN RIPOR2 MBP AC079313.2 LCP2 MYO19 NOL4L LRIG1 TXNRD3NB AC008764.1 CDH23 RAC2 ZNF77 PITPNC1 ZBTB16 LYSMD3 PDE4D TSPYL2 DOCK10 ARMH4 NLRC5 MPRIP IQGAP1 GALNT10 PATL2 STT3B HSPA13 ABHD15-AS1 VPS13D LRBA CFAP97 AC110275.1 FAM129A THADA CCDC88C ITK ITPR2 ADA CDC14A ERCC1 CHD1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP25 ARHGAP26 FYN PREX1 ZEB2 AC016831.7 MBP KLF13 RIN3 BICRAL RHOH C1ORF112 LPP PPP2R5C CCND3 SPIDR CD247 IL32 AC068896.1 TNFAIP8 CYTH1 PRKCE RUNX1 ETS1 IQGAP2 PRKCH CACNA2D4 CNOT6L UMAD1 ACOX3 RPTOR MXI1 IKZF1 FOXN3 ZFP36L1 CCDC88C TBC1D5 ZBTB16 LPCAT1 STIM2 RB1 TRABD2A ARID1B NFIA MTMR12 TGFBR2 RUNX3 CDV3 AL136295.1 DNM2 ITPR1 DRAIC PDE4D MVB12B ARRDC3 EHD1 MCTP2 SMAD3 PITPNC1 SORL1 RORA AC079612.2 IQSEC1 MBNL1 STK10 AL359736.1 MAML2 PLXNA4 STK17A RGS3 AP000311.1 ERAP1 LPIN1 LIPA SNAP25-AS1 TUBA1C MAPRE2 ZNF609 ENKUR TTC33 AC022182.1 CAMK2D DGKD SEMA4D NF1 ZNF831 PATL2 M6PR AC005332.5 CHD1 CXCR4 EEF1E1-BLOC1S5 VIM-AS1 AC069368.1 GMNN TBC1D2B FAM49B AL035530.2 UBAC2 NCOA2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH SEMA4D UBAC2 ARHGAP26 RUNX1 ITGAE RPTOR ANKRD44 TRAJ28 AKAP13 ATXN1 CELF2 HDAC4 FAM129A EHD4 IFNG-AS1 MBP SNTB1 CDH23 RAPGEF1 FOXN3 HIVEP2 RIN3 SESN1 FYB1 ELL CAMK2D ELMO1 LINC02273 FYCO1 LINC01135 MACF1 MIAT MCCC2 TGFBR3 JARID2 TTC39C WWOX FSIP1 UBASH3A LDLRAD4 PRKAR1B CDK6 SH3KBP1 SMG6 AL359736.1 CD96 ST3GAL1 GAS7 STK24 TMEM135 SIRT5 AC008014.1 NEK7 GNG2 LBH AC087500.1 PRR5 EYA3 RB1 IFIH1 USP12 SPEF2 ETS1 TSPEAR SLC25A26 DERL3 AL356234.2 REC8 MBNL1 ITPKB AL031727.2 RHOF SYNE1 SEPT9 LCP2 AC025682.1 DIS3L2 AL357060.1 AC022126.1 ANXA11 CCNT1 ARHGEF3 TCF7 EPHA4 PMEPA1 EML6 ZFP36L1 KANSL1 NOL4L ELMSAN1 TDP2 SLC2A1 AL591885.1 OXNAD1 LINC01004 SH2B3 DUSP10 CDV3 ELF1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: IKZF1 UBAC2 SEPT9 ELL ARHGAP26 ATXN1 SLC2A1 CELF2 CXCR4 ARID5B ATG5 CD247 CPOX AC016831.7 AKAP13 ANKRD44 RUNX1 SYNE1 CYTH3 PVT1 PRKCH PLEC HIF1A-AS1 GGA1 CBLB INO80B SCML4 KLF9 GPR107 NCOA7 FYB1 PATL2 STIM2 RGS3 IQGAP2 NLRC5 CDK6 CCDC88C ATP10A DRAIC VOPP1 PIP4K2A RORA SRPK2 SLX4IP RPS6KA2 SUPT3H HDLBP TBC1D5 AP000787.1 ANKRD11 PTPRC PRKCB CHST11 GCH1 LRRC41 XPO6 NUP43 NAV2 PAQR8 AL355512.1 CDC14A ETS1 ST8SIA4 STAM CARD11 HOPX PHF20 LDLR AC011481.2 PPP2R5A RBP5 AL928654.3 BCL2 SNX9 MRPS30-DT CRYBG1 STAM2 KLC1 WDR1 AC010542.3 KCNC3 MCCC2 PLAC8 CABLES1 CDH23 PI4KB STK40 IGF1R CDC42SE2 HOMEZ LINC01588 MBNL1 AP000311.1 RIN3 PLAGL1 RASSF5 KLF13 AC243829.4 CHD1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ANKRD44 RUNX1 FOXP1 HIVEP3 PRKCH RIN3 AL359736.1 ARHGAP26 RORA-AS1 NOSIP PTPRJ TM2D3 SEPT9 LIPA PTPN6 CROCC LFNG ITPR1 SCML4 ATP2B4 TMEM163 ZC3HAV1 AL121748.1 AC069368.1 ELMO1 AC022126.1 ZBTB4 TGFBR3 LINC01588 ELL PBX4 RAB11FIP4 LMNA PLCL2 P2RY8 FYCO1 HNRNPUL1 HECW2 CD226 ERCC1 MCTP2 FOXN3 ZNF365 TNFAIP8 LPIN1 SNTB1 FAM117A CD6 ATXN1 AC005775.1 ZNF217 TRERF1 DRAIC MCF2L2 SESN1 MNAT1 ZMIZ1-AS1 DLEU2 FLI1 TRAJ28 PJA2 USP34 MYBL1 ELK3 TSTD2 ZFP36L1 IKZF3 ARHGAP15 KAT2B MIDN ANKRD10 PATL2 FAM177A1 LRRFIP1 EIPR1 ACTB SYNE1 BICDL1 CHST11 ACOXL AC048341.1 EML2 LRRC8C-DT ATG5 FOXO1 C21ORF91-OT1 WDR1 PREX1 CD247 PIK3R1 HELB MTMR4 TMED5 SMAD3 CUX1 ZDHHC14 KBTBD2 NFIA RUNX3 AC068896.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 MBP UBAC2 RUNX1 PRKCH FOXP1 CD247 CCDC88C RAPGEF1 FYN ANKRD44 HIVEP3 AC016831.7 SEMA4D MGAT5 ETS1 CAMK2D AC068896.1 LINC01588 CCND3 CDC14A ARHGEF3 ARHGAP25 TSPOAP1 AP000311.1 CHST11 KLF13 GRK5 TNFAIP8 RPTOR STAT4 PTK2B TSPAN14 KLF12 CELF2 ATXN1 RBMS1 ERCC1 IKZF1 PRKCQ PPP2R5C STK10 CDC42SE2 KIF21B FYB1 NFATC2 PDE4D HNRNPUL1 LIPA AL359736.1 MBNL1 AC025946.1 CDK6 LPIN2 PLCD1 ZBTB16 AC008764.1 CBLB STIM1 SNTB1 RERE LINC00598 BCL11B LMNA CD2 PVT1 ZNF217 GSE1 ATXN7L1 ITPKB UMAD1 MPRIP FLNA FAM107B STK17B H3F3B LCP1 RIPOR2 ZNF365 OSBPL3 PMAIP1 CD96 AC010894.3 PSTPIP1 AC009126.1 ARHGAP15 RUNX3 ASB2 AC021752.1 STIM2 CST7 ACOXL NCK2 ASAP1 CYTIP ARHGEF1 DOCK9 SRPK2 ARID1A PTPRC\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC068896.1 RUNX1 CCDC88C FOXP1 BCL11B CYTIP PPP1R16B GRK5 CELF2 ARHGAP26 PRKCH HIVEP3 LINC01126 UBAC2 AC010894.3 NCK2 ARHGAP25 ARHGEF1 RASSF3 TGFBR3 AC016831.7 DNM2 SORL1 LINC01934 TNFAIP8 TTC33 DRAIC IQSEC1 NFATC2 SEPT9 RORA APBB1IP MAML2 GPR68 RGS3 CGGBP1 ELMO1 AUTS2 DOCK10 ETS1 PTPRJ ZNF407 LBH AKT3 ATXN1 HMBOX1 TRABD2A CD96 ST3GAL1 BHLHE40-AS1 BCL2 TECR STAT4 TRAJ28 FAM102B RIPOR2 ITGAE FOXN3 BORCS5 HOOK2 PTPRC LEPROTL1 STK39 PIP4K2A ARHGEF6 TBC1D2B TBC1D1 SLA2 PRKCB IL21R UTRN KLHDC4 ZFYVE28 AC022182.1 MBNL1 RHOF SNX9 CEP85L HBS1L TFB1M RFFL RUNX3 TGFBR2 RAD51B LINC00426 ITK IKZF3 MBP FAM85B CXCR4 SEMA4D PPP2R5C OXNAD1 UBASH3B PDIA4 AC008764.1 CRYBG1 KLF13 FYB1 MACF1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC068896.1 RUNX1 AKAP13 IKZF1 AUTS2 UTRN ARHGEF3 PRKCH ARHGAP26 ELMO1 LRIG1 CBLB PPP2R5C AHR AL390957.1 FYN STK10 EPHA4 UBE2D3 SEMA4D GNG2 SLC2A1 MIAT ANKRD44 TBC1D5 STIM1 TTC39B PIK3R1 TECR EPB41L5 PREX1 ATG5 RARG NBAS LINC01126 AL139807.1 LAPTM5 LRFN2 CARS2 ST8SIA4 MNT EIF1 IFFO2 CST7 G3BP2 CFLAR EHD1 INPP4A NFATC2 SMG6 ATP6V1E2 CELF2 SIK3 CHST11 SNTB1 HNRNPUL1 AC025159.1 DUSP10 PTPRJ LINC01588 NR4A2 CDK6 CPOX NCOR2 KLF13 HOOK2 TOGARAM2 RASA3 ENC1 DLEU2 ARAP1 AC009185.1 TBC1D2B RASGEF1B FBXW7 MAML2 MATN1 CMIP PTCH1 PIP4K2A POU2F1 RASSF3 ITPR1 SUSD6 MTSS1 ST3GAL1 ARHGAP15 PTK2B LHPP HIVEP3 WDR73 TMEM131L BCL2 PRKAG2 MSI2 PRKCQ ARID5B RB1 CYTH1 CCDC88C\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: IKZF1 AC078923.1 FYN HIVEP2 ARHGAP26 ITGAE STAT4 RIPOR2 AL390957.1 SERTAD2 CELF2 UTRN MBNL1 PREX1 UBAC2 ASAP1 AL357060.1 CCDC88C ETS1 FKBP5 SCML4 MBP ZNF131 TSPAN14 RAPGEF1 KIF22 ANKRD44 ZNF831 LINC01588 RBMS1 POLM MAMSTR PIP4K2A MYO1F FYB1 LPP BACH2 JMJD1C FNDC3B FAM49B CCDC12 CAMK2G AHNAK C10ORF143 AC005726.1 FOXP1 KIF21A RPTOR LCP2 DPYD MCF2L2 PTPN6 APBB1IP PLXNC1 PPP2R5C IQSEC1 ZBTB16 STIM2 APBA2 MCCC2 ACTN4 BRWD3 ARID1B SVIL AL162377.3 RASA3 LY9 ELMO1 NAA38 DOCK8 FSIP1 GAS7 SF3B5 TUT4 AKAP13 GMNN ITPRIP TBC1D14 RHOH AUTS2 LRCH1 KIFC1 ARL4C ZBTB2 C6ORF106 JAK1 CHST11 CD226 MYH9 DGKQ PRKCH POC1B CIC NMRAL1 TMEM189-UBE2V1 HNRNPUL1 LINC01307 ARAP2 RUNX3 TNK2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AL390957.1 ANKRD44 AC068896.1 SEC22C HNRNPC PXYLP1 TTC39C RB1 SMAD3 ZBTB16 RASSF1 STAT4 RAPGEF1 CHD7 RIPOR2 ARHGAP26 FOXO3 PITPNC1 RALGDS PIP4K2A FOXN3 NUCB2 NPM1 AC137810.1 AC006369.1 ST3GAL1 NR3C1 STAT1 PIK3AP1 ITGAE PAIP2B GNG2 ETS1 DUS2 MBP PXN ARID1B CDKN3 ATG5 CEP85L IKZF3 RANGAP1 TSPOAP1 CHST11 CCDC88C GASAL1 MPP7 ZEB2 B4GALT5 AC007513.1 ITGA6 CYTIP RHOF RAD51B SYNE1 RNF38 ACYP2 GALNT11 DNM3 IKZF1 LINC01655 FOXN2 HIVEP3 AGPAT4 MAML2 AC016831.7 AC093010.2 FAM102B TMEM241 UBE2D3 VMP1 PTK2B INPP4B RBMS1 SH3KBP1 NEK7 PDE4D UTRN ZFYVE28 KLF12 ERN1 HDAC4 ACLY ADAM19 AC048341.1 BIRC2 NEDD9 SLC3A2 MBNL2 CD8A TBC1D1 GSK3A NIPA2 AC022126.1 LINC00426 BRICD5 PAXIP1 TPM4 NUMA1 CD226\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 HIVEP2 ATG5 TNFAIP8 PTPRC ARHGAP26 PRKCH PRKCB ATXN1 PREX1 RIPOR2 IQSEC1 KIF22 MBNL1 MYH9 ACOXL ARID5B TRAJ28 FOXN3 CDC42SE2 AL359736.1 LINC01588 UMAD1 RAPGEF6 UTRN FAM117A RORA-AS1 AC068896.1 CCDC88C PTK2B DDB2 KLF13 SEMA4D GFOD1 SOD2 ZFYVE28 INO80B ARHGAP15 RASSF5 CAMK2D RASGEF1B FAM129A ETS1 ITPR1 GLS PRKRIP1 LCP2 IKZF1 TXNDC9 MYO18A AL035530.2 AKNA TBC1D5 CELF2 STIM1 MGAT4A DLG5 ARHGEF3 TGFBR2 CDC14A CHST11 STT3B CMTM7 CCDC12 C21ORF91-OT1 BCL9L RAD51B PRRC2B PATL2 RIN3 DNMT3A SLC1A2 GNG2 ACTN4 FKBP5 ARNTL DOCK10 EEPD1 SMARCA2 SPTBN1 TNIP1 TIPARP DNM3 AL023755.1 LSP1 TBC1D14 AKAP13 PIGV CCND3 TGFBR3 HIVEP3 LIPA NBN SH3BP5 ERCC1 ZBTB16 AC013270.1 RARA TRERF1 RUNX3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MED12L UMAD1 ST8SIA4 FAM129A ELMO1 FAM102B BICRAL BBIP1 IQGAP2 TSC22D1 KLF9 RUNX1 ABTB2 LCP2 NF1 FYB1 MCM5 PPM1B ARHGAP25 MRPS27 CDK17 E2F2 CEP85L AKNA GRAMD1C CCDC102A ABLIM2 GATAD2A LINC01840 ZBTB7A CELSR1 ALOX5AP PCAT1 SEMA4D ISPD HNRNPUL2-BSCL2 ARHGAP26 PKM Z83839.2 MMD LYST CARS2 RNF213 PLEKHF1 ZFP36L1 CLYBL PRKCH PPP1R42 PAG1 EIF3H NCK2 LIPE-AS1 CDC14A MAGI3 PLCB1 RORA-AS1 PTPRJ AC007285.1 AL133523.1 CEP120 RARA AC005899.8 GAB3 VMP1 SOD2 CST7 RIN3 DNMT1 AC012184.1 AC097534.2 ITPKB CASP9 FOXO1 LINC02320 GRAP2 GRK6 LINC01588 ZCWPW1 AC092647.5 NR3C1 MAPRE1 MCM9 ERI1 BCL9 SGMS1 RANBP9 RPS6KA3 PRKCQ AC087164.1 AC078980.1 PAOX BTF3 FGR ASIC2 CMIP ASAP1 HK1 CD5 AL357060.1 AC010754.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 TSPOAP1 PRKCH DNAH2 IL7R ARHGAP26 CCDC88C CDH23 RUNX1 PPP2R5C MAML2 RAPGEF1 RALGDS SLC38A1 ITPKB DNM2 RIPOR2 MNT CD247 MSI2 RHOF ERN1 BCL9L TNRC6B LINC01934 PLXNC1 CELF2 PIK3R1 LINC01135 RUNX3 ASAP1 ITGAE GRK5 RAD51B FOXP1 TRAJ28 KLF13 CIC LIPA IQSEC1 HDAC4 AHR ZBTB16 CFLAR BCL11B MACF1 PITPNC1 RFFL AKAP13 STK17B BCLAF1 TC2N SLC2A1 HNRNPUL1 SESN1 CCND3 RASSF5 SEPT9 FAM129A TOGARAM2 AL031599.1 IL2RB MYBL1 SPTBN1 CDKN1B BCR GRAP2 EHD4 AL512791.2 AC078923.1 ACTB FYB1 LDLRAD4 ITPR2 PHF19 TECR CDC42SE2 UGP2 SPEF2 AC016831.7 JAK1 TBC1D5 TTC39C NFATC2 NDUFV2 PTK2B SH2B3 EVL ATF7IP USP1 IKZF3 CMIP MYH9 AUTS2 RALGPS1 ARHGEF3 SCML4 RORA LINC00598 LINC02384\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: KIFC1 SIN3A AC104472.3 GRK5 AP3D1 THUMPD3-AS1 CPT1A NR4A1 SRPRA GPBP1L1 RALGDS ZFP41 MTMR4 FLNA AL450998.2 HOOK2 ZNF837 GATAD2A ATP13A1 HNRNPK POU2F2 MPRIP TIPIN MACF1 DRAP1 PATL2 SLAIN2 SSSCA1 MIB2 HNRNPA2B1 NPHP3-ACAD11 HNRNPL ADAMTSL4 TBCA AP000311.1 SP3 ILF3 C19ORF67 ZBTB7A AC025682.1 CSNK1G2 ZNF367 PLAUR FNBP1 SH3GL1 HMGB1 AC002401.1 MNT STK24 EPM2AIP1 SEC31A ZNF335 CHKA PIM1 SF1 ELK4 HNRNPUL2-BSCL2 LAPTM5 PNKD AF038458.3 HOMEZ RPL22 IFNL1 NAPA DENND4B SPON2 EEF1G B3GAT3 TMEM64 METTL21A SPAG4 TTC23 DOHH IL1RAP BFSP1 TCERG1 MOB3A CARD19 LMF1 ACTB ARID5B ZEB2 PIDD1 RIN3 HIVEP2 DAB1 ZNF324 S100A10 RRAS RASGEF1B DNAJB6 SLC2A8 RASGRP2 DNM1L IKZF3 CAMK1D CARS2 ARHGAP4 RERE VASP\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: IER5 RUNX1 PRKCH PIP4K2A ETS1 ITPKB TBC1D5 ATP2B4 NCK2 AC068896.1 HIVEP2 FAM107B CELF2 CYTH1 IKZF1 RASSF5 ACOXL RAPGEF1 PHF19 UBAC2 ANKRD44 RHOF SMAD7 MNT NR4A1 NFATC2 ELL SKI RUNX2 RARG PREX1 LMNA RBL2 TTC33 EPC1 FOXO3 JARID2 ZC3H10 ANKMY1 RMC1 BICDL1 HIVEP3 CHST11 HNRNPUL2-BSCL2 RGS12 RORA-AS1 CDK17 SREBF2 CD69 NDUFV2 GATA3 PPP1CA FYN TSPAN14 ZBTB16 RPS6KA2 AC025159.1 KMT5A ZFP36 UTRN NFKBID TRAJ28 FAM78A AKNA PTMA AL691403.1 SLC11A1 DGKD NOP58 AC079313.2 PPP1R16B DRAIC SH2D3A PRF1 ELMSAN1 SH2B3 IMMP2L KLF9 UMAD1 ST3GAL1 PPP2R5C NR4A2 AL160408.2 MPZL1 PPP2R5A PIM3 SYNCRIP NFE2L3 CD55 ADAMTSL4 KAT6B LINC00910 FUS EHD1 GSK3B MSI2 PTCH1 JADE2 RARA BICRAL\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MSI2 ST3GAL1 MAML2 FOXP1 NIN ARHGAP26 PRKCH ETS1 PATL2 TMEM106B XPO6 SCML4 CCDC88C ITK TNFAIP8 TRANK1 TIAM1 STK10 NBN FAM20B GRK5 BCL11B ARHGEF3 DNM2 ARHGAP15 HECA ARID5B AP000311.1 ST6GAL1 SNAP47 ABR JARID2 TSPOAP1 TGOLN2 LARS AP000787.1 EVL KHNYN KBTBD2 G3BP2 AC013270.1 ZBTB45 C1ORF112 UBAC2 STIM2 FIZ1 PITPNC1 KLF9 AC068896.1 AL392172.1 HDAC4 XXYLT1 MCM9 KLF13 CYB5B MZF1-AS1 NUCKS1 FLNA TPRG1 ADGRE5 ZFYVE28 UMAD1 FOXN3 ARSG ACOXL MDS2 RASSF3 C15ORF53 NQO2 PYM1 PTK2B FOXO1 HINT1 CELF2 CDKL5 MYB STRN3 ZNF143 CAMK2D PNKD TBCCD1 REV3L ARRB1 MAP3K3 PECAM1 ZNF790 TCF20 BBX SKI PELI2 SPPL3 TAGLN2 ERCC1 LY6E-DT RUNX3 PRKACB TMED5 DNMT3A NCK2 PAG1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 PIP4K2A SEC22C RORA-AS1 KLF12 ITGAE IQGAP2 TGFBR3 IKZF1 ZNF831 SEPT9 MSI2 ATG5 PIK3R1 KLF13 RAB27B LINC02384 PTPN4 PPP1R16B ASAP1 PPP2R5E CD247 AKAP13 ICAM2 FYN PPP3CA ST3GAL1 TNFAIP8 INPP5D BCL11B CD2 GAS7 SPIDR TNIK KLRD1 GRK5 PRKCH ARHGAP26 PATL2 MBP IKZF3 VAV3 FOXP1 CBLB SESN1 PPM1B PPP2R5C AOAH MYO1D AC068896.1 RAD51B ZBTB16 PRKCQ FAM107B LPP PDE4D APBA2 TG RPTOR TPRG1 UTRN CEMIP2 AL035696.3 TBC1D2B RAPGEF6 UBE2D3 AMPH PTCH1 TRERF1 ZEB2 ETS1 SLCO3A1 RIN3 TIAM2 MDM2 RHOH PHACTR2 ARID1B BCL2 LINC01358 CARS2 PCAT1 DRAIC TGFBR2 CUBN THEMIS AL136962.1 ZFP36L1 ZNF365 PBXIP1 RERE ETV5 NFATC2 WNK1 ACOX3 CCDC88C TADA1 RSU1 LINC01841 VMP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 ANKRD44 RUNX1 ST3GAL1 RABGAP1L CELF2 HDAC4 RIPOR2 CD247 ATXN1 HIVEP2 CDH23 GNG2 MGAT5 PIP4K2A RAD51B ACOXL PATL2 RASA3 JAML FYN ZBTB16 DAPK2 MGAT4A PRKCH SEMA4D BCL2 LINC01004 ATP8A2 RAP1A AL390957.1 PRKCA SPON2 CRADD NCOA2 AC008764.1 FYB1 SH3KBP1 HNRNPUL2-BSCL2 NUB1 WWOX GTDC1 NEAT1 ZNF831 BICRAL FAM129A ARHGEF3 CMTM7 AL359736.1 LPIN2 SCML4 VPS13D MYO1F IL7R UBAC2 LPP CASP8 RORA-AS1 TGFBR2 SEPT9 PDE4D SPTBN1 AC022075.1 SNX9 GRK2 CHST11 OSBPL3 HIVEP3 UMAD1 AC016831.7 TPRG1 RBMS1 STAG2 KLF13 STAT4 PLCB1 RNF125 FLI1 P2RY8 AL162377.3 DLEU2 ZFP36L1 HBP1 ARMH4 UXS1 LINC01358 HLA-DMA TOX2 KIF22 RB1 CD96 ABTB2 CPOX FSIP1 LINC01126 MDC1 SLC2A1 AL157373.2 DUS2 RFFL\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 UBAC2 PRKCH AKAP13 ARHGAP26 PTK2B AKNA SEPT9 SPIDR ANKRD11 NCK2 FYB1 TSPOAP1 NFATC2 RORA-AS1 KLF13 GNG2 CYTIP RUNX3 GALM CDK6 ACTB GAS7 MYH9 ATG5 LRRFIP1 RHOF ETS1 PRKCA CBLB CELF2 ELF1 PITPNC1 SEMA4D AC016831.7 IL21R RIPOR2 BCL9L AL390957.1 AC079313.2 OSBPL3 STK10 AC068896.1 ELL TNFAIP8 AL359736.1 DNM2 HECW2 TNIP3 MACF1 ZNF652 ICA1 TTC33 MBNL1 SETBP1 RHOH FYN PIP4K2A CCDC69 GNGT2 SMG6 WWOX AC069368.1 SMAD3 AP000311.1 FOXN3 ST3GAL1 PTPRJ ELMO1 MBP XYLT1 AC006369.1 MGAT5 LCP2 FOXN2 AL163932.1 GPRIN3 INPP4A LRIG1 HIVEP3 SLC25A26 FAM129A MCM9 SYNE1 RIN3 LINC01588 ZNF831 SMAP2 PTPRC CASP9 HECTD1 ARHGAP15 MTMR4 TLE4 ITK PRKCQ ARHGEF3 MPP7 FKBP5 ARSG\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LEF1 ST3GAL1 TXNIP ANKRD44 TCF7 STIM1 MAML2 LINC01126 ITPKB AL133523.1 ABHD15-AS1 SERINC5 FAR1 MAP3K3 HOOK2 SKI AL136368.1 RUNX1 NOSIP FOXP1 TTC39C CSNK1G1 AC008875.1 NRL SLC2A1 CEP85L ETV4 ZNF846 CABIN1 AC022217.3 KAT6A ETS1 CAPN5 TSPOAP1 GRAMD1A AC107375.1 KLF13 LTBP3 THEMIS KLF9 TGFBR2 LINC01478 CASP8 LRRC23 ANKH MAD1L1 LRFN2 CASC11 ELMO1 MGAT4A MAML1 GSE1 TGFBR3 CD247 LDLRAD4 TNFAIP8 SLC12A6 RASGRP1 IKZF2 TOX LINC01588 AC009185.1 C1ORF112 MSI2 ATF4 ATG5 SAP130 KCTD9 RUVBL1 SIN3A IL7R ARHGAP26 KIFC1 ZFPM1 PCIF1 PARVG MRPL50 PKIG BRWD3 SLC30A7 IKZF1 RREB1 SLC38A1 ISOC2 CD44 SLAMF1 AC079313.2 SCCPDH GM2A ST7L CDK19 AC073342.1 CDH23 CCDC34 ADAM8 FGD3 ZC3H4 DZIP3 IFT140 PATL2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'." }, { "role": "assistant", "content": "unknown" } ] } ]