[ { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPL10 RPL13 RPS27 RPL13A RPL18A RPS12 RPL28 PTMA RPS3A RPS19 RPL11 RPS14 RPS23 RPS3 RPL37 RPL39 RPS20 RPL30 HLA-B RPL27 RPS15 RPS9 HLA-DRA RPL29 RPS21 RPS6 RPS7 RPS24 FTH1 RPL6 RPL23A RPL37A HMGB1 UBA52 RPS13 PARP14 RPL3 CD37 IGHM RPL24 GBP4 CD74 RPL9 RPL14 RPL5 SMCHD1 PNISR EIF1 RPL23 RPS15A HSP90AA1 RPS29 UBB JUND RPL38 RPL22 CXCR4 NPM1 EEF1D BCL2 EZR NACA STAT1 HLA-A GBP2 HSP90AB1 HLA-C TMSB4X RPSA NEAT1 HLA-E CD55 EPSTI1 PRPF4B RPL31 TAGLN2 PFDN5 SERF2 GBP5 REL HINT1 HLA-DRB1 SEPT7 YBX1 LTB ISG20 COX7C LARP7 RPL36 ANKRD11 HNRNPU H3F3A ACTB NCL SP100 THRAP3 PRRC2C\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X RPLP1 RPL13 RPL18A RPS27 RPS14 HLA-DRA RPS19 RPS3A RPL10 RPL13A TPT1 RPS12 RPL11 RPS23 RPL28 RPL37 RPS7 RPS6 RPL37A RPL39 HLA-B RPS29 RPL6 RPS21 RPL23A RPL3 CD74 RPL9 RPS15A RPS13 RPS9 RPL30 RPS3 PTMA RPL5 RPL29 RPL27 RPL14 RPL10A IGHA1 HLA-A RPL23 RPL22 RPSA RPS15 RPL36 HLA-DRB1 MS4A1 RPL38 YBX1 RPL24 RPS20 GAPDH EIF1 HLA-C RPS24 CD37 ACTB HLA-DPA1 PFDN5 GBP1 NPM1 H3F3A GBP4 HNRNPA2B1 HMGB1 BANK1 HSP90AB1 PPIA PRRC2C RIPOR2 FUS ATRX RPL4 FTH1 CYBA SET BTF3 UBA52 AIM2 TPM3 LTB SARAF NAP1L1 N4BP2L2 ARHGDIB PSMA7 SUB1 NCL RPL36AL HERPUD1 GBP2 NEAT1 ZNF644 EMP3 DDX5 DNAJC2 RAN\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPL13 RPS19 RPL10 RPL13A RPS27 PTMA RPS12 RPS23 RPL30 RPL18A RPS15 RPL11 RPL37 TMSB4X RPL28 RPS9 RPL37A RPS3A RPS20 HLA-B RPS14 RPS13 CD74 RPL39 RPS15A RPL23 RPL24 RPL3 RPS7 RPS3 RPS6 RPL9 UBA52 HLA-DRA RPL29 EIF1 HLA-DRB1 HSP90AA1 ACTB MS4A1 NACA HSP90AB1 RPS29 RPL27 RPL14 ZFP36L1 RPL6 RPL5 PARP14 FTH1 RPS24 ATP5F1E IGHM RPL23A RPSA RPS21 DNAJA1 HMGB1 CD37 EZR RPL10A CD83 RPL36 IGHD HLA-A RPL38 RPL22 HNRNPK BIRC3 PFDN5 SERF2 PNRC1 MYCBP2 JUND REL HLA-C HNRNPA2B1 ISG20 PNISR EEF1D WARS CD48 NOP53 PRRC2C CD79B ATP5MG NFKBIA SAMD9L RNF213 ARPC2 PSME1 YWHAZ UBC IFITM2 SET CCR7 SMCHD1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 HLA-B TPT1 RPL13 PTMA RPS19 RPL10 RPL14 RPS23 RPS27 RPS12 RPL30 RPL13A RPL28 HSP90AB1 RPS14 RPS3 RPS6 UBA52 RPL11 RPL39 RPL37 RPL18A CD74 HLA-A RPS15A RPS13 MS4A1 RPL24 CD83 RPL9 RPS24 HLA-DRA RPL23A BCL2A1 RPS3A RPS29 IGHM RPS21 RPL6 RPL23 RPS7 EMP3 RPL29 RPL22 RPL5 RPSA RPL36 RPS15 MIR155HG BASP1 RPL37A PPIA RPS20 HNRNPA2B1 HINT1 REL RPL3 SERF2 ARPC2 HNRNPU UBC NDUFV2 RPL36AL NACA NAP1L1 HLA-DMB JUND PSMA7 HLA-C H3F3A YBX1 BZW1 EIF1 GNG5 ACTB PNRC1 ZFP36L1 CYBA DUT TAPBP ANP32B DDX21 RPS9 ATP5F1E FTH1 ARID4B HERPUD1 NPM1 SPIB TCF4 SLC38A1 UBB GBP2 ATP6V1G1 STK4 RPL10A PLEKHO1 CWC15\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPS12 RPLP1 RPL13A RPL10 TPT1 RPL13 RPS23 RPL28 RPS19 RPL18A HSP90AB1 RPL3 RPL11 RPS6 RPS27 RPL30 RPS20 RPS14 RPL37A RPS3A RPS15 RPL9 RPL5 RPS13 RPL23 RPL23A RPS3 RPS7 RPS9 RPL37 RPSA RPS21 RPS29 RPL14 HLA-B ACTB RPL39 PTMA RPL29 TMSB4X RPL27 RPS24 RPS15A HSP90AA1 RPL10A HLA-A RPL24 NCL PARP14 EIF1 RPL22 HLA-C RPL36 UBA52 RPL6 HNRNPA2B1 YBX1 RPL31 H3F3B MS4A1 PSME1 FTH1 WARS ATP5F1E STAT1 MIR155HG YWHAZ CFL1 TXN RPL4 PSMA7 HNRNPU PRRC2C HLA-DRA NACA N4BP2L2 PPIA PABPC1 CD74 AIM2 COX6A1 HNRNPR RPL38 TOMM7 SERF2 SLC25A6 ARPC2 HMGB1 SQSTM1 SON VIM SRRM2 H3F3A IGHM PFDN5 TRIM44 GPX4 HLA-DRB1 SMC6\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 RPL18A RPS12 HLA-DRA RPL10 RPL28 RPL11 RPS19 RPL13A RPS23 RPL29 RPS15A TPT1 CD74 RPS14 RPL37 RPL30 PTMA RPL14 RPS27 RPS15 RPS6 RPL23A RPS3A TMSB4X RPL39 HLA-A RPL37A UBA52 RPS24 HLA-B RPS7 RPL6 RPL3 RPS9 RPS3 RPS20 RPS13 CD37 RPS29 RPL24 HLA-DRB1 RPL23 RPL27 RPS21 MS4A1 HLA-C SERF2 RPL9 CD79B RPL5 EIF1 NACA RPL36 RPL38 CYBA LTB RPSA RPL10A PSME1 RPL22 CCR7 RPL31 RPL4 CFL1 AES EEF1D ARHGDIB HSP90AA1 PABPC1 YBX1 HINT1 PPIA SARAF ATP5F1E MARCKS LAPTM5 TAGLN2 UBB COX7C SLC25A6 HLA-DPA1 SYNE2 LINC00926 ZFP36L1 CORO1A DNAJA1 PNRC1 BTF3 RALGPS2 CD83 ACTB RPL36AL ARPC2 HMGB1 EIF3G SET FTH1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS12 TPT1 RPL23A RPL10 RPL13 RPS14 RPS3A RPS27 RPS13 RPL28 RPL11 RPS7 RPL18A RPS6 RPS23 RPL37 RPS15 RPL30 RPS21 RPS3 RPL3 RPS19 RPL5 RPL29 RPS15A RPL24 PTMA RPL39 RPS9 GBP2 HLA-A RPL37A RPL23 HLA-C CCR7 RPL9 RPL13A MS4A1 RPL36 NAP1L1 LAPTM5 HLA-B RPS20 RPL27 RPL6 UBA52 EZR RPL22 RPL36AL CXCR4 BIRC3 TCF4 RPL14 MIR155HG TMSB4X TANK NDUFB6 BRD7 PFDN5 IGHM RPSA STAT1 GBP4 CPNE1 AFF3 AP3B1 CIRBP DEK PABPC1 PNN THOC3 SLC38A2 SARAF IKZF3 SNX9 PRDX6 GOLGA4 JPX NCL ATP5F1E ZRANB2 EIF4G2 DDX6 PXK CCNI ATF1 SQSTM1 LTB COMMD6 DDT PPIA PTPRC HSP90AA1 GRPEL1 GNAS SRPRA SNX3 MIR29B2CHG\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 HSP90AB1 RPLP1 HLA-DRA PTMA HLA-DRB1 RPS19 CD74 RPS12 ACTB RPL10 YBX1 RPL13 RPL28 RPS14 RPL13A HLA-B RPL22 RPL10A HLA-DQB1 RPL23A RPL18A RPL11 RPS23 H3F3A RPL3 RPS24 RPS9 RPL5 RPL6 RPL14 RPL30 RPS7 RPS21 RPS3A RPS15 HSP90AA1 HERPUD1 RPS27 PSMA7 RPS6 NPM1 RPL37 TPT1 HLA-A CALR PRDX1 RPL36 RPL24 LDHA ATP5F1E FABP5 EIF1 HLA-C RPS15A ENO1 RPL29 BTF3 RAN RPL37A HLA-DPA1 RPL38 HNRNPDL RPL9 PARK7 DNAJA1 PPIA HSPD1 NCL RPL23 UBA52 PRMT1 EIF5A HLA-E HMGB1 RPL27 RPS3 HLA-DQA1 RPS13 RPL39 RPS20 PTGES3 HINT1 RPS29 HSPA5 MIR155HG CFL1 PDIA6 REL GNAS UBC FTH1 NACA PPIB RPL31 PPA1 DDX21 SET EIF1AX HNRNPC\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS12 TPT1 RPL13 RPL10 RPS14 RPS19 RPL13A RPL18A RPS3A RPS27 RPL11 RPS23 RPL30 RPL39 RPS13 RPL3 RPS6 RPS7 TMSB4X RPL9 RPL23A RPL28 RPL29 HLA-B RPS15A RPS21 RPL37 RPS3 RPL37A RPL6 RPS9 RPL14 RPSA RPS24 ACTB HLA-A RPS20 RPS29 RPS15 RPL23 GBP2 UBA52 RPL5 PTMA RPL22 RPL36 NACA HINT1 RPL4 HLA-C RPL10A RPL24 BANK1 GBP1 CD69 HNRNPA2B1 RPL27 VIM HSP90AB1 GBP4 CD37 HSP90AA1 PSME1 SERF2 H3F3A CTSH GBP5 HLA-DRA FTH1 ISG20 RPL31 NOP53 RPL38 PFDN5 IGHM CD74 EMP3 AIM2 CYBA DNAJA1 NCL BAZ1A ARHGAP24 FABP5 RPL36AL CAST SLC25A6 YBX1 ATP5F1E EIF1 SAMD9L N4BP2L2 GNAS CDC42 XAF1 TPM3 BBX SYF2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL10 RPS12 RPL13 TMSB4X TPT1 RPS27 RPS19 RPS14 RPS23 RPS3A RPL28 RPL11 RPL18A RPS3 RPL13A RPL30 RPS15A RPL3 RPS13 RPL39 RPS6 RPL23A RPS15 RPL5 RPS7 RPL29 RPL14 RPL37 RPS21 LTB RPL9 RPS24 HLA-B RPS9 RPSA RPL6 HLA-C RPL37A RPL10A RPL36 PTMA RPL27 HLA-A RPL23 UBA52 VIM RPL22 RPS20 RPL24 NACA RPS29 IL7R RPL38 GBP5 HINT1 HLA-DRA RPL31 PARP14 ANXA1 GBP4 COX7C HSP90AA1 PTPRC IL32 ACTB CD74 NPM1 SON EEF1D PSME1 YBX1 S100A4 STAT1 PFDN5 ARPC2 FTH1 IGHM HSP90AB1 H3F3A HLA-DRB1 GIMAP4 PSMB9 EMP3 GIMAP7 S100A6 TOMM7 EIF1 CFL1 HMGB1 PPIA EEF2 MYL12A LDHB NCL GNAS SNRPG SERF2 RPL36AL\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPS12 RPL13 RPS14 RPL13A RPS27 RPL18A RPL28 RPS23 RPS19 RPL10 TMSB4X RPL37 RPL11 PTMA RPS3A RPL30 RPS6 RPS3 RPL9 RPS20 RPL39 RPS15A RPS13 HLA-B RPS15 RPL37A RPL14 RPL23A RPS21 RPS9 RPL27 RPL3 RPL29 RPL6 RPS29 RPS7 UBA52 CD74 HLA-DRA RPL23 RPS24 RPL10A RPL36 RPL22 RPL24 RPL5 RPSA HLA-A RPL38 LTB NACA NEAT1 CD37 HSP90AB1 RPL31 FTH1 BANK1 SERF2 CCR7 HLA-C VIM GBP4 CXCR4 PPIA HMGB1 YBX1 RPL4 DEK ACTB CAST EIF1 JAK1 FNBP1 NOP53 DDX17 NAP1L1 ZFP36L1 EEF1D PNRC1 H3F3A HSP90AA1 GAPDH EEF2 AKAP13 LAPTM5 YWHAZ HINT1 PFDN5 CALM1 SMCHD1 SEPT7 SSU72 PDCD4 IRF2 HLA-F RAN COX8A\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL10 TMSB4X RPL13 RPS12 RPL28 TPT1 RPL13A RPS15 NEAT1 RPL11 RPL29 RPL6 RPS9 RPS27 RPL18A PFDN5 RPL9 RPS7 RPS14 RPS19 RPS6 IKZF1 RPLP1 NACA CDC42SE2 RPL22 FTH1 RPL23 RPL23A IL32 RPL39 RPS23 RPS3 HINT1 RPL30 CASP8 PTMA LTB S100A11 ACTB HSP90AB1 RPS3A GIMAP7 RPL36 RPL24 RPL38 PABPC1 RPL37A IL7R HNRNPH1 DOCK8 LRRFIP1 PNN RPS13 RPL10A SLC38A2 UPF2 GCC2 RPL36AL LPGAT1 RPS15A BID IFI16 PDXDC1 KTN1 NAA25 PTBP3 VIM MORF4L1 STX8 FN1 EBAG9 MAPK14 MAST4 SMARCA5 N4BP2L2 RPSA UQCRB S100A10 SRSF7 TALDO1 RPS21 KMT2C ATP5F1E HLA-B RPS29 CYP1B1 CHCHD2 RPS24 UBA52 ACAP1 ARHGDIB S100A6 TRIR GNLY SORL1 GBP2 ZNF292 RPL31\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 RPL10 RPS12 RPS27 RPL13A RPS14 TPT1 RPL30 PTMA RPL28 RPL18A RPS19 RPS23 RPL11 RPS3 RPS3A RPS15A RPL37 RPL29 RPL37A RPS6 RPL3 RPL6 RPL39 RPS13 RPL14 HLA-DRA RPL9 RPL36 RPS15 CD74 RPS21 RPL23 RPL5 RPS7 HLA-B RPL23A RPS9 RPL10A RPS29 RPL22 TMSB4X RPS24 RPS20 RPL27 NACA RPSA RPL38 FTH1 UBA52 RPL4 RPL24 CD37 LTB HMGB1 HINT1 RPL31 HLA-A HLA-C HLA-DRB1 TOMM7 BTF3 HLA-E IGHD ACTB ATP5F1E CYBA H3F3A PABPC1 FXYD5 PFDN5 PNISR PSMB9 BANK1 EEF1D CXCR4 NAP1L1 LAPTM5 SLC25A6 NPM1 MS4A1 SERF2 COX7C RPS4Y1 NOP53 RPL36AL PRRC2C BOD1L1 ARGLU1 YBX1 PRDM2 HNRNPA2B1 GAPDH EIF1 CD79A HLA-DPA1 HSP90AA1 CWC15\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPS12 RPLP1 RPL10 RPL13 TPT1 RPS14 RPL11 RPL13A RPS27 RPL28 RPS23 RPL30 RPS3A PTMA CD74 RPS19 RPL18A RPS13 RPS6 RPL14 RPS15A RPL29 RPL37 RPL9 RPS3 RPSA RPL37A HLA-DRA RPL3 RPL39 RPS15 HLA-B RPS20 RPS21 RPL23 RPL6 RPS29 RPL5 RPL23A NACA RPS24 RPL24 TMSB4X HLA-DRB1 RPS9 RPL22 EIF1 RPL36 ACTB HLA-A RPS7 HSP90AB1 ISCU RPL31 UBA52 RPL27 TCF4 RPL10A FTH1 HMGB1 RPL38 NAP1L1 GSTP1 VIM CD37 RPL4 ID3 H3F3A GPX4 MS4A1 EMP3 JUND YBX1 HNRNPA2B1 EEF2 SET BTF3 COX7C TALDO1 CXCR4 RAD21 PSMA7 IGHM HSP90AA1 EEF1D STAT1 GNAS PRRC2C BOD1L1 NDUFB2 GAPDH ORAI2 HINT1 MYL12B PNRC1 SLC25A6 DNAJA1 PHF3 HLA-C\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPS23 RPL13 RPL10 RPS19 RPL18A FTH1 RPL28 PTMA IGHM RPS12 RPS14 RPS27 RPS13 HLA-DRA RPL23A RPL39 CXCR4 HLA-B RPL13A RPL29 UBA52 RPL11 RPS3 RPL3 RPL6 HLA-E RPS3A RPL37 RPL14 CD74 RPL30 RPL22 LAPTM5 RPL9 CD37 DEK RPL23 BCL11A RPS9 RPS21 HLA-DRB1 SERF2 PTPRC RPS15 RSBN1L HSP90AB1 RPL10A RPL37A CCNI SYNE2 IGHD ACTB UBC RPS6 HMGB1 TMSB4X JUND NEAT1 HLA-C RPL4 LINC02397 EEF1D CALM1 ISG20 EEF2 ZFP36L1 LYN PSMA7 SRSF11 S100A6 PMAIP1 RPSA PNN GNAS PPIA NACA FAM133B SP110 RPS20 RBM25 RPS7 ITM2B CD200 RIPOR2 VPS13C HSP90AA1 SMARCA5 AKAP9 CD79A TOMM7 PAPOLA BCL2 IKZF1 ORAI2 HNRNPA2B1 HLA-DQB1 RPS29\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS12 RPL13 RPS23 RPS3 RPL10 RPL28 TPT1 RPS27 RPL18A RPS6 RPL11 RPS19 RPL3 RPS14 RPS3A RPS15A RPL37 RPL30 RPS15 RPL13A RPL39 RPL29 RPS24 RPL23A RPS9 RPS13 RPS20 RPL37A RPL9 PTMA HLA-B RPL14 RPS7 RPSA RPL5 RPL6 UBA52 RPS21 HSP90AB1 RPS29 RPL10A RPL27 RPL36 RPL22 RPL38 RPL24 NACA HLA-DRA HLA-C RPL4 RPL23 EMP3 EIF1 EEF1D RPL31 HINT1 HLA-A ACTB YBX1 PPIA GBP1 ATP5F1E ISCU CD74 TMSB4X PSME1 COX7C HLA-E NPM1 HMGB1 CD37 TOMM7 YWHAZ VIM PFDN5 CANX AIM2 CFL1 ANP32B PSMB1 STK4 CD48 YWHAB CD83 HLA-F SLC25A6 GBP5 PRRC2C RABAC1 EEF2 UBE2L6 CHCHD2 REEP5 UBB REL CD53 CMTM6 ATP5F1D\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 RPS12 TPT1 RPL18A RPL10 RPS27 RPS19 RPS3A RPL13A RPS14 RPL28 RPS23 RPL30 CD74 TMSB4X RPL3 PTMA RPS6 RPL37 HLA-DRA RPL39 RPS13 RPL6 RPL11 RPS3 HLA-DRB1 RPS15A RPS7 RPS20 RPL14 RPS15 RPS9 RPS21 RPL23A RPL23 RPL29 GBP4 HLA-B RPL37A RPL10A CD83 RPL9 CD37 FTH1 NACA RPL5 IGHM RPL27 RPL24 HLA-DQB1 PARP14 EIF1 PNRC1 STAT1 HLA-A MS4A1 JUND RPS29 UBA52 RPL22 PABPC1 PFDN5 REL RPL36 RPSA EEF1D CD79A PSMB9 HSP90AA1 CCR7 HINT1 RPL38 HLA-DQA1 HLA-E HSP90AB1 ACTB RPL31 GBP1 PPIA NAP1L1 BANK1 RPS24 IGHD NOP53 BIRC3 HLA-DPA1 TOMM7 SIPA1L1 PTPRC PSME1 COMMD6 YBX1 SERF2 EZR CD48 EIF2AK2 HLA-C ORAI2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 RPL10 TPT1 PTMA RPS12 RPL11 RPS23 RPS27 RPS19 RPL18A RPL28 RPS14 RPL13A RPL30 TMSB4X RPS15A RPS15 RPL23 RPS13 RPS6 HLA-B RPS3 CD74 RPS3A RPL3 RPL37 HLA-DRA RPL23A RPS29 RPL39 RPS21 RPL29 RPL37A UBA52 RPSA RPL38 RPL14 RPS20 RPS9 FTH1 RPL36 RPS24 NACA RPS7 RPL31 RPL22 RPL24 EIF1 RPL4 RPL10A RPL9 NUCKS1 RPL5 CD79A CXCR4 CALM1 PPIA RPL6 CD37 PABPC1 EEF2 HINT1 FAM107B PTPRC ARPC2 FXYD5 CORO1A GNAS GAPDH TPM3 UBC EZR REL RPL27 SRSF7 LAPTM5 ACTB ATP5F1E SERF2 HLA-A ATRX GBP4 EMP3 HNRNPA2B1 GBP5 ANKRD11 CCT3 ISG20 SET MSN SRRM2 MYL12A UBB TOMM7 HSP90AA1 TAF1D HP1BP3 HMGB1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL10 RPLP1 RPL13 RPL18A TPT1 RPS23 RPS12 RPS27 RPS3A RPS19 RPS14 PTMA RPL11 RPS6 RPL28 RPS15 RPL3 RPL29 RPL23A RPS20 RPL39 RPL37 RPL23 RPL30 RPS3 RPL13A RPS7 RPL14 RPL9 RPS15A RPS9 RPL6 RPL37A RPS13 UBA52 RPS21 HLA-DRA RPSA RPS24 TMSB4X CD74 RPL10A RPS29 HLA-B HLA-DRB1 NACA RPL36 HLA-A RPL5 GBP2 H3F3A RPL31 RPL22 REL RPL24 LAP3 HSP90AB1 EEF1D HLA-C JUND GBP4 RPL27 PARP14 RPL38 IGHM BASP1 PPIA HINT1 ACTB MS4A1 NOP53 RPL22L1 NPM1 SMAP2 ATP5F1E CCR7 SYNGR2 PPA1 FTH1 PRRC2C SRGN FNBP1 TAF1D ARHGAP24 PFDN5 ANP32B EIF3E CLEC2D HNRNPA3 POU2F2 ELK4 YBX1 NCL HSP90B1 BANK1 HMGB1 HSP90AA1 DEK SRRM1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 TPT1 HLA-B RPS19 RPS27 RPL10 RPL28 RPL18A RPS12 IGHM RPL13A RPS23 RPL37 RPL11 HSP90AA1 PTMA RPS13 RPL30 RPS15 RPS3A RPS14 RPL10A RPL37A CCR7 GBP1 RPS9 RPL9 HLA-C GBP4 RPS6 GBP5 HSP90AB1 RPS3 CFL1 HINT1 RPL6 RPL3 RPS21 CD37 PARP14 RPL23A CD74 CD79B NACA TMSB4X EIF1 RPS20 RPL38 PTPRC RPL5 PDIA3 AKAP9 RPL24 RPL23 RPS15A FAM107B RPSA DEK IRF8 RPL39 FTH1 NCL RPL29 GDI2 MS4A1 EEF1D HLA-A LACTB NOP53 RPS24 HNRNPK RPL14 RPS7 LAP3 DAPP1 UBE2L6 PSMB9 IFI16 PDCD4 RNF213 GLS REL GBP2 PTPN1 UBC TMEM123 HMGB1 DDX5 RPS29 CD79A H3F3A PSME1 CAND1 RPL22 HNRNPA2B1 RARRES3 EIF3M NEAT1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 TPT1 PTMA RPL18A RPL10 RPS23 RPS14 RPS19 RPL13A RPL28 RPS21 RPL30 RPL37 RPL11 EIF1 RPL6 RPL23A RPL29 RPS27 RPS15A RPS13 RPS7 RPL27 RPS3 RPS9 RPS12 HLA-B RPL23 RPS15 RPL37A RPL36 HLA-DRB1 RPL14 RPL9 CD74 FTH1 GBP4 UBA52 RPS3A RPL39 TMSB4X RPL22 RPS20 RPL10A JUND RPS24 NAP1L1 HLA-C HSP90AB1 ATP5F1E ATP5MG HLA-DPA1 RAN UBC LAPTM5 RPS6 RPL3 CD37 SMAP2 DRAP1 CAST H3F3A ACTB HNRNPC TAGLN2 RPSA HERPUD1 GPBP1 RPS29 SERF2 IGHM EZR ARPC2 RPL24 SLC25A6 UQCRB COX7C PARP14 REL EPSTI1 ATP5MC2 NASP CCT3 CDC42SE2 NDUFV2 IGHD CFL1 PPIA HLA-E NUB1 PSMA4 HLA-A MPC1 SETD2 BASP1 HVCN1 SKP1 PSMB9\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS27 PTMA RPL18A RPL13 CD74 RPS12 TPT1 RPL13A RPS14 RPL10 RPL30 RPS23 RPL37 RPL28 RPS3A RPS13 RPL3 RPL11 RPS19 RPL39 RPS6 RPL37A RPL23A RPS3 RPL27 HLA-DRA RPL29 RPL36 RPS9 RPS20 TMSB4X RPS15 RPS21 CD37 RPL24 RPL14 IGHM RPL10A RPL9 CCR7 FTH1 RPL22 FAM107B RPS15A RPSA RPL6 MS4A1 HLA-DRB1 PNRC1 NACA ACTB RPL38 HLA-B HLA-DQB1 CYBA HLA-A HSP90AB1 H3F3A EIF3E CD79A REL HMGB1 PARP14 RPL23 RPL4 RPS7 TOMM7 ITSN2 CFL1 JUND RPS29 SQSTM1 RPL5 SET HINT1 TNFRSF13C EIF1 RHOA ZCCHC7 PSME1 UBA52 RALBP1 CYTIP LAPTM5 DARS SON ATM CAPZA1 SFSWAP TMBIM6 HNRNPA2B1 SP100 ATP5PF STX7 EIF3F PABPC1 GSTP1 SACM1L\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS12 RPL10 TPT1 RPL13 RPS6 RPS24 RPS3A RPL3 RPS23 RPS14 RPS3 RPL30 RPL11 RPL9 RPL28 RPS19 RPL39 RPS9 RPS27 RPS7 RPL37 RPS15A RPS13 RPL18A RPL29 RPS15 RPL6 RPL5 RPL13A GAPDH PTMA RPL37A RPL36 RPS21 RPL10A RPL14 RPL23A NACA RPL23 RPL22 RPS20 HSP90AB1 RPL24 RPL31 UBA52 RPL38 BTF3 ACTB RPSA SRGN TMSB4X FTH1 HLA-A PFDN5 RPL27 ZFAS1 SPN CD74 HMGB1 PPIA HINT1 HLA-B PABPC1 HSP90AA1 H3F3A PNN SNRPD2 NCL RPS29 RNF130 TPM4 EEF2 SET EIF3E YBX1 SERPINB1 ZRANB2 HLA-DRA GNAS PLIN2 SERBP1 GATA2 CDK6 NAP1L1 EIF3A DDX5 EIF1 CALR SUMO2 CHCHD2 IQGAP2 HNRNPH1 EIF3M H3F3B RPL4 COX6B1 PNISR IL1B\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPS12 RPL13 RPL10 PTMA RPLP1 RPL13A RPS19 RPL28 RPL11 RPS6 RPS23 RPL37A RPL18A RPL3 RPS3A RPS27 RPL30 RPS14 TPT1 RPS24 RPL37 RPS7 RPS13 RPL9 RPL39 RPS3 RPL5 RPS20 RPL14 RPL29 RPL23 HSP90AB1 RPSA RPS15A RPL10A RPS15 RPS9 RPL23A RPL36 REL RPL6 ACTB RPS21 NACA RPS29 RPL27 HLA-A HLA-B RPL22 PABPC1 NPM1 NAP1L1 UBA52 TMSB4X MS4A1 PPIA RPL4 RPL24 NCL YBX1 MARCKS BTF3 HNRNPA2B1 RPL38 EZR ATP5F1E RPL31 HNRNPU SLC25A6 SERBP1 XRCC5 HERPUD1 CD83 CCL22 CD37 DDX5 NEAT1 PFDN5 COX7C PRDX1 EEF2 PRPF4B HLA-DMB CCT3 YWHAZ HLA-E GRHPR RPS4Y1 ARPC5 CHD4 FABP5 FUS VOPP1 UQCRB ACTR2 ZFP36L1 RAN HLA-DRB1 PRRC2C\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL10 TPT1 RPS12 RPL13 RPS23 RPS27 RPL11 RPS14 RPL18A RPS3A RPL30 RPL28 RPS3 RPS19 RPL3 RPL13A PTMA RPS15 RPS13 HLA-B RPS6 RPL9 RPS20 RPL5 RPL29 RPL23 RPL6 HLA-A TMSB4X RPL14 RPL23A RPL37 RPS9 RPL39 RPS7 RPL10A RPL37A RPS21 CD37 PFDN5 RPSA NACA RPS15A UBA52 HLA-DRA SERF2 RPL38 GAPDH ACTB RPL36 YBX1 RPL27 RPL24 ISG20 RPS24 IGHM HSP90AA1 HLA-C FTH1 CD74 HINT1 SP100 RPL22 RPS29 EMP3 ZFAS1 EEF1D HSP90AB1 RPL4 ID3 GNAS ATP5F1E CYBA RAN LTB CFL1 NPM1 PSMB9 CXCR4 LAPTM5 UQCRB PPIA EZR BTF3 SRRM1 NOP53 IGHA1 RPL31 SYNE2 IFITM2 PCNP GBP4 XAF1 UBE2L6 TMOD2 SERP1 TOMM7 SEPT7\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 RPL10 RPS12 RPS14 TPT1 RPS23 RPS19 RPS27 RPL30 RPL28 RPL18A RPL11 RPL3 RPS15A RPL13A RPS6 RPS3A RPL5 RPS3 RPL29 RPL37 RPS13 RPL24 RPL39 RPS15 RPL37A RPL23A UBA52 RPL9 TMSB4X PTMA RPS21 RPS9 RPS24 HSP90AB1 RPL6 RPL14 RPS29 RPS7 RPSA RPL10A NACA HLA-A RPS20 ACTB RPL23 RPL22 RPL27 RPL36 CD74 HLA-C HLA-B HINT1 ZFP36L1 YBX1 GAPDH PPIA MS4A1 EIF1 NPM1 HLA-DRA VIM RPL38 RPL31 GBP4 CD37 HLA-DPA1 JUND BANK1 HMGB1 CD48 COX7C CFL1 EIF3F HSP90AA1 ARPC2 UQCRB RPL4 PNISR STAT1 DDX5 HLA-E NAP1L1 RSL24D1 RPL36AL TOMM7 ATP5MC2 FTH1 NCL PFDN5 ANP32B ATP5F1E CD83 LDHB GBP2 COMMD6 FAM107B ELOB\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 RPS12 RPL10 TPT1 RPS3 RPS23 RPS27 RPS14 RPS3A RPS19 RPL30 RPL28 RPL11 RPS15A RPL18A RPL3 RPS13 RPL13A RPS6 PTMA RPS15 RPL23A RPL37 RPL9 RPS9 TMSB4X RPL14 RPL39 RPL29 RPSA RPL6 HLA-B RPL37A RPS20 RPL5 RPS7 RPS24 UBA52 RPS29 RPS21 LTB RPL36 NACA RPL23 RPL10A RPL27 RPL22 HLA-C RPL24 RPL38 HLA-A PFDN5 RPL4 HSP90AB1 PTPRC EIF1 FTH1 NOP53 BTF3 RPL31 HINT1 UQCRB H3F3A TOMM7 CXCR4 SERF2 SLC25A6 EEF1D GBP4 PABPC1 ATP5F1E NPM1 PSME1 IL32 COX7C PNRC1 ACTB GIMAP7 APRT CD3D HSP90AA1 TXNIP GIMAP4 EIF3E EZR EMP3 CD74 JUND ATP5MG HLA-E ITM2B CD37 PSMB9 ZFAS1 NAP1L1 GNAS CFL1 SYNE2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 RPL13A RPS23 RPS12 RPS19 RPL10 PTMA RPS3A RPL28 RPS27 TPT1 HSP90AB1 RPS15A RPS6 RPL3 RPL30 RPL18A RPL23A RPL37 RPL11 RPL23 TMSB4X RPS3 RPL6 RPS15 RPL37A RPS14 RPL14 PARP14 FTH1 ACTB RPL29 RPS7 RPL5 RPL27 RPL10A RPS24 RPS13 RPS21 RPS20 IGHM RPSA RPL9 UBA52 RPL36 CD83 STAT1 NCL CD74 MS4A1 HSP90AA1 SET RPL39 HLA-DRA YBX1 RPL22 RPS29 RPS9 PPIA RPL24 GNAS H3F3B PSMB9 WARS PSME1 HLA-B RPL4 RPL38 HLA-C H3F3A RPL31 CCR7 TAGLN2 HLA-DRB1 HLA-A NACA NAP1L1 CD37 FAM107B HNRNPA3 IGHD HLA-DPA1 DDX18 ISG20 KPNB1 TPM3 EIF1 BIRC3 CXCL9 GBP4 PFDN5 GBP1 NPM1 FNBP1 CLEC2D UBXN1 EMP3 PIK3IP1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 TPT1 RPL28 PTMA RPL18A HLA-DRA RPS12 RPS27 HLA-B TMSB4X RPL13A RPS19 HLA-A CD74 RPL10 RPL11 RPS3A IGHM RPS23 NACA RPS14 RPL6 HLA-DRB1 RPS21 RPL9 RPS13 GBP1 RPL39 RPS15A ACTB RPL30 RPS3 RPL14 RPL29 RPS6 RPL23A RPL31 RPL5 FTH1 LTB RPS15 GBP4 RPL3 CD37 RPS7 RPS20 RPL37A CD79A TXNIP RPS24 PARP14 MS4A1 UBA52 RPL23 EIF2S2 SERF2 RPL22 RPL37 HSP90AB1 EIF1 CXCL9 CD53 PSMA7 H3F3A RPSA SNX2 RPS29 PFDN5 RPL27 KPNB1 HLA-DQA1 HLA-DQB1 RPL24 HSPD1 RPS9 HSP90AA1 DNAJC8 TCF4 BANK1 SET ZNF267 YBX3 CFL1 TPM3 RPL38 CALM1 SMCHD1 N4BP2L2 HMGB1 HIF1A TIFA AC245297.3 UBB HLA-C ATP6V0E1 HDGFL3 RPL36 GLDC\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 PTMA TPT1 RPLP1 RPS23 RPL18A RPS27 IGHM RPS13 RPL28 RPL13 RPS19 RPS14 RPS12 RPL13A TMSB4X RPL30 RPS3A RPL10 CXCR4 RPS9 CD37 HLA-B ISG20 RPS3 JUND RPL37A GCC2 RPS15 HLA-C RPL37 RPL39 FAM107B RPS24 NACA CD74 EZR RPL29 LTB RPL27 RPL23A RPL11 RPL6 RPS29 HLA-A FTH1 PARP14 PNISR STK4 RPL23 MS4A1 SMCHD1 CD79A SERBP1 HMGB1 RPL9 SEPT6 RPL38 ACTB AES RPL24 RPS7 RPL14 YWHAZ UBA52 ID3 HLA-DMB LUC7L3 RPS4Y1 SMAP2 RPL31 RPL36 RPS15A RPS20 H3F3A FOXP1 TCF4 RPL3 HINT1 UBXN4 TOMM7 SERF2 MYCBP2 NAP1L1 UBC PNRC1 SPTBN1 CFL1 RPL22 ANKRD13A HSP90AA1 IGHD BAZ1A GBP4 RPL5 ARID5B H3F3B MYL12A RPL36AL CHCHD2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPLP1 RPL10 PTMA RPL18A RPS12 RPS27 TPT1 RPS23 RPL28 RPL11 RPS19 RPL3 RPL13A RPS14 RPL30 RPS3 RPS6 RPL37 RPL39 RPS13 RPS15A RPL29 RPS3A RPS15 RPS21 RPS9 RPS20 RPL36 CD74 RPL23 RPL38 RPL6 CD83 RPSA FTH1 CD69 RPL14 RPL37A RPL23A RPL24 HLA-DRA TMSB4X NACA CXCR4 RPL10A EIF1 RPL5 HLA-B RPS7 RPL9 RPS29 JUND UBA52 HLA-A CD37 RPS24 HLA-E RPL27 RPL31 NCL EZR RPL22 PFDN5 HLA-DRB1 PABPC1 REL PNRC1 HSP90AA1 TOMM7 CD79A SEPT7 EEF1D ISG20 RSRP1 STK17A DDX5 RPL4 HNRNPA2B1 LINC02397 HMGB1 HLA-C MS4A1 GBP2 HERPUD1 NFKBIA BCL11A PARP14 NOP53 LAPTM5 CCNI HINT1 CCR7 CALM1 BPTF H3F3A HLA-DPA1 BTF3 SARAF\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS12 RPL13 PTMA RPS19 RPL10 RPL28 RPS3A RPL13A RPS27 HSP90AB1 RPS23 TPT1 RPS24 RPS14 RPL11 RPL18A RPL30 RPS6 RPL3 RPL6 RPL39 RPS15 RPL29 RPL5 RPS15A CD74 RPS21 RPL14 TMSB4X NCL RPL10A RPS13 RPL23A RPL37 ACTB RPS9 HLA-DRA RPSA HLA-B RPS29 RPL37A RPL9 MS4A1 HSP90AA1 RPS3 HLA-A HLA-DRB1 RPS7 FTH1 UBA52 RPL23 RPL22 RPS20 RPL24 YBX1 HNRNPA3 SET GBP2 EMP3 RPL27 PSME1 EIF1 ATP5F1E IGHM NACA HNRNPA2B1 HLA-DPA1 RPL31 RPL36 GBP5 JUND PARP14 RPL38 STAT1 HLA-C CD79A FAM107B PSMA7 SERF2 H3F3A SYNGR2 PPIA PKM ARPC2 GBP4 HLA-E DDX5 UBB XRCC5 USP15 ZFP36L1 COX7C EZR HLA-DQA1 FABP5 PSMB3 HMGB1 RAN\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 RPS23 TPT1 RPL10 RPL13A RPS12 RPL18A RPS27 RPL28 RPS3 RPS3A RPL11 RPS19 RPL30 RPL37 RPS13 PTMA RPS14 RPS6 IGHM RPS7 HLA-B CD74 RPL39 RPS20 RPS15A RPL3 TMSB4X RPS9 RPL14 RPS15 RPL6 RPL5 RPL24 RPL29 RPL37A RPS21 RPL23 RPL9 RPL36 RPL23A EIF1 NACA HLA-A NOP53 RPL10A RPSA HLA-C PNRC1 FTH1 HLA-DRA UBA52 RPS29 PARP14 CD37 RPL38 RPS24 HLA-E CXCR4 PSMB9 RPL31 NAP1L1 HMGB1 JUND SERF2 ATP5F1E EEF2 ACTB GBP4 SARAF HINT1 RPL27 PABPC1 HLA-DRB1 STAT1 RPL22 FOXP1 CCNI HSP90AB1 PNISR H3F3A MARCH1 EEF1D SEPT7 BOD1L1 KIAA1551 PDIA3 DEK PMAIP1 TAGLN2 LTB EIF3K MS4A1 SRRM1 JAK1 LAPTM5 SMCHD1 AIM2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL10 RPLP1 RPL13 RPS27 RPS23 RPL18A RPL13A RPS12 RPS3A RPS19 RPS13 RPS14 TPT1 RPL30 RPS6 RPL37 RPL28 RPS15A RPS3 RPL29 RPL39 RPL11 RPL3 RPL5 RPL9 RPL6 RPS21 UBA52 RPS20 RPS9 RPL37A RPS24 RPSA RPS7 HLA-B RPL14 RPL23A HSP90AB1 RPS15 NACA TMSB4X RPL27 RPL10A RPL22 RPL31 PTMA RPL38 CD79B RPL23 RPS29 FTH1 SLC25A6 NAP1L1 HLA-A GBP4 NPM1 RPL24 PABPC1 CD37 NOP53 GBP1 RPL4 HINT1 HMGB1 EEF1D SYNE2 BANK1 PNRC1 PRRC2C HLA-C GBP2 ACTB GPX4 TOMM7 BTF3 IGHM HLA-DRA ZFAS1 EIF1 PFDN5 SET SEPT7 SON MS4A1 STAT1 EEF2 RPL36AL LAP3 NCL HLA-DRB1 PPIA NDUFB2 H3F3A RIPOR2 HLA-F CD74 SWAP70 SERF2 TAGLN2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL10 RPL13 RPS12 TPT1 RPS27 RPS3A RPS23 RPS15A RPS14 PTMA RPS3 RPS19 RPL3 RPL13A RPS13 RPL30 RPL18A RPS6 RPL9 RPL28 RPL37 RPL11 RPL37A HLA-B RPS15 RPS7 RPL29 RPL6 RPS9 RPSA RPL39 RPL23 RPL14 RPS20 UBA52 RPL10A RPL5 RPS24 RPL23A RPL27 NACA RPL38 RPL24 CD74 RPS29 PARP14 NPM1 RPL22 HINT1 HLA-E HLA-A PFDN5 RPS21 CD37 IGHM RPL4 PRRC2C SMCHD1 HLA-DRA SP100 RPL36AL PDS5B IFITM2 GBP4 XAF1 OST4 NUB1 NEAT1 CXCR4 ACTB HSP90AB1 HLA-C RPL31 EIF1 TRIR ISG15 CD47 MS4A1 TOMM7 NAP1L1 CCR7 JUND TNRC6B RPL36 ZNF107 BTF3 ARPC2 SERF2 DDX5 XRN1 ARID4A TPM3 YBX1 PNRC1 SET PABPC1 USP8 PNISR\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS12 PTMA RPL13 RPL10 HSP90AB1 RPS3A RPL28 RPS19 RPS27 RPS23 RPL18A TPT1 HLA-DRA RPS6 RPL9 RPS7 RPL11 RPL23 RPS14 RPL14 RPS24 RPL13A RPL39 RPL29 RPS3 RPS15 GAPDH RPL3 RPL37 UBA52 RPL6 RPL30 RPS9 RPS13 RPL5 RPL36 RPL10A RPL27 CD74 VIM RPL23A ACTB HLA-DRB1 RPS21 NACA RPS29 TMSB4X RPS20 RPS15A RPL37A YBX1 HINT1 REL RPL22 RPL31 HSP90AA1 RPL24 HLA-C PPIA EIF1 HLA-B PRDX1 RPL4 GBP2 NPM1 EMP3 RPL38 PSMA7 HNRNPA2B1 ATP5F1E RPSA LDHA PARK7 CD79A GPX4 CFL1 ENO1 FAM107B JUND PSMB1 PABPC1 RPL36AL COX7C APRT ARPC2 CALM1 EIF5A SNRPB FTH1 SEPT7 ATP5F1D NFKB1 CALR HNRNPF HLA-A SSB NAP1L1 PAK2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL10 RPS12 RPL13A RPS14 TMSB4X RPS27 RPS19 RPL28 ACTB RPL13 HLA-B RPL23A RPS23 RPL11 TPT1 RPL3 RPS3A RPS13 HSP90AB1 RPS3 RPS6 RPL18A RPL30 PTMA RPSA RPL9 RPS15A RPL37 RPS20 RPL23 RPL5 RPL14 RPS24 RPL24 RPS7 RPS9 RPL10A YBX1 RPL6 UBA52 RPL36 RPS15 RPL37A RPS21 RPL29 RPL27 RPL39 HLA-C MS4A1 HLA-A RPL22 HSP90AA1 NPM1 PPIA NACA RPS29 ATP5F1E CCL22 NAP1L1 RPL38 PARP14 HNRNPA2B1 STAT1 LCP1 RPL31 EMP3 PSME1 H3F3A TPM3 GBP4 REL CFL1 SYNGR2 EIF1 CD83 NCL EEF1D PFDN5 HLA-DQA1 UXT NEAT1 BTF3 ISG20 DDX5 EZR CCT3 ZFP36L1 EIF5 EIF3A PLEKHO1 SRSF3 RAN CD74 PABPC1 CALM1 GPX4 SET SRRM2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 RPS12 RPS19 RPS23 RPL10 RPL28 RPS27 RPL18A TPT1 RPS3 RPS14 RPL11 RPL13A RPS3A RPL37 RPL30 RPS6 RPL3 RPL23A RPS13 RPL39 PTMA RPL14 RPS9 RPL5 RPS15A RPS7 RPS21 RPS20 TMSB4X RPL24 RPL6 RPL37A RPL36 UBA52 RPL29 RPL9 HLA-B RPS15 RPL23 NACA RPS24 FTH1 HLA-A RPL10A RPS29 JUND HLA-DRA CD74 RPL22 RPSA RPL27 PSMB9 ACTB H3F3A RPL31 HSP90AB1 PFDN5 VIM HLA-DPA1 PSME1 PARP14 BIRC3 ISG20 HMGB1 REL PPIA RPL38 H3F3B IGHM MIR155HG MX1 HINT1 RPL36AL CD37 HLA-E HLA-C UBC CD83 CFL1 CXCR4 HSP90AA1 LTB UBB EEF1D HLA-DRB1 GBP4 SEPT6 SERF2 HLA-DQB1 GBP1 RPL4 NDUFB2 ISG15 NEAT1 MS4A1 TYMP C12ORF57\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 RPS12 TPT1 RPS27 RPL10 RPS23 RPS19 RPL11 RPS3A RPL13A HSP90AB1 TMSB4X RPS13 PTMA RPL18A RPS14 RPS3 HLA-B RPS6 RPL30 RPS9 RPL28 RPS21 RPL3 RPS15 RPL9 RPS20 RPL5 RPL39 RPL6 GBP5 RPL23A CD37 RPL14 RPL29 IGHM CD83 RPS24 HSP90AA1 RPL27 RPL37A HLA-A UBA52 RPS29 RPL22 NACA RPL37 HLA-C MIR155HG RPL23 SET RPL38 GBP4 RPS7 EIF1 HNRNPA2B1 JUND RPSA MS4A1 PNRC1 EEF2 BANK1 EIF5A RPL10A SLC25A6 RPS15A PARP14 RPL24 H3F3B H3F3A GBP2 RPL31 VIM TAGLN2 HINT1 PFDN5 CD74 RPL36 SFPQ ACTB SP110 SON GBP1 CFL1 EDF1 IFI16 NPM1 DDX5 YBX1 LTB BTF3 MYL12B EEF1D NAP1L1 HLA-E ISCU NASP NCL\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL10 TPT1 RPL13 RPS27 RPS19 RPS12 RPL30 TMSB4X RPL11 RPS23 RPS14 RPL3 RPS15 RPS13 RPL13A RPS15A RPS3A RPS3 RPL37 RPL18A RPL28 PTMA RPL39 UBA52 RPS20 RPL24 RPL5 RPS7 RPS21 RPS6 RPL9 RPL23A RPSA HLA-B RPS29 RPL36 RPL37A RPL6 RPS9 RPL29 PNRC1 RPL27 HINT1 RPS24 FTH1 HMGB1 RPL10A RPL14 RPL23 EEF1D RPL22 NACA CD74 NOP53 ITM2B DDX5 HLA-A EIF1 PTPRC HLA-C RPL38 RPL36AL STK17A MTDH BTF3 SON CD37 SRRM2 PFDN5 LAPTM5 HLA-DRA IGHM COX6A1 H3F3A UBC ATRX SRSF5 IL7R GNAS DNAJA1 YBX1 HLA-E SERP1 JUND CCNI ISG20 HNRNPA3 NPM1 CD48 TAX1BP1 TRAF3IP3 GBP4 STK4 LTB GMFG PNISR ARHGDIB ATP5F1E\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 RPS12 RPS27 RPS23 RPL10 TPT1 RPL11 RPS14 RPL13A TMSB4X RPL28 RPS3 RPS19 RPS3A RPL18A RPS6 RPS15A RPL37 RPL30 RPS13 PTMA RPL39 RPL3 RPL23A RPL37A RPS21 RPL29 HLA-B RPL14 RPL9 RPS15 RPS9 RPS20 RPL24 RPS7 RPS24 RPL5 RPSA CD74 LTB UBA52 RPL27 RPL6 NACA HLA-A RPS29 RPL36 CD37 HSP90AB1 RPL10A RPL23 IGHM HLA-DRA HINT1 HLA-C RPL36AL FTH1 NCL RPL38 NOP53 RPL22 UBB EEF1D RPL31 EIF3F CD83 JUND EIF1 PPIA TOMM7 PFDN5 STAT1 GBP4 EEF2 GNAS ITM2B HLA-E H3F3A NPM1 SERF2 PARP14 PNRC1 ISG20 H3F3B BTF3 HNRNPU SLC25A6 EMP3 HMGN1 RBM25 POU2F2 BANK1 MS4A1 PSMB9 HLA-DRB1 HSP90AA1 REL HNRNPDL\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL10 RPL13 RPS27 RPS12 RPL28 RPS14 RPS23 RPL3 RPS3A TPT1 RPL11 RPL13A RPL18A RPS3 RPS6 RPL6 RPL30 TMSB4X RPL23A RPL14 RPL37 RPL29 RPL37A RPS13 RPS9 RPS7 RPS21 RPL10A RPS19 HLA-A RPL9 RPS24 RPL39 RPS15A NACA RPS20 RPL5 LTB RPS15 RPL23 PTMA UBA52 FTH1 RPL22 HLA-B RPL4 RPL24 RPSA RPL36 ACTB RPL27 RPL38 RPL31 IGHA1 RPS29 SMCHD1 H3F3A CD74 CFL1 BANK1 HLA-DRA MS4A1 RALGPS2 SERF2 EEF1D HLA-C EEF2 PABPC1 PPIA HNRNPA2B1 HINT1 PSMA7 PFDN5 PDCD4 SEPT7 MYL12A BTF3 EIF1 EIF2S2 CD37 CFLAR HSP90AB1 ACTR2 TCEA1 MARCKS MYL12B ARPC2 S100A4 UBB HNRNPC PSIP1 SBNO1 RPS4Y1 MEF2C HSP90AA1 TAGLN2 PARP14 SUMO2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS12 RPL13 TPT1 RPL10 RPL13A RPL18A RPS14 RPS19 HLA-DRA RPS3 RPS3A RPL11 RPS23 RPS6 RPS27 RPS15A HSP90AB1 RPL30 RPL28 RPL3 RPL9 PTMA RPS9 CD74 RPS13 RPL37 RPL14 RPL23A RPS20 GBP5 RPL37A NCL HSP90AA1 RPS21 RPL29 CD83 NPM1 RPL24 RPL10A RPL39 RPS15 HLA-B HLA-DRB1 RPL23 EEF2 RPL22 NACA RPSA PABPC1 RPL27 UBA52 PPIA NFKB1 HLA-A RPL5 NEAT1 MIR155HG HLA-DPA1 GBP4 YBX1 HNRNPA2B1 RPS7 STAT1 RPL4 NAP1L1 BCL2A1 RPL36AL RPL36 ZFAS1 DNAJA1 EEF1D HLA-DQA1 SRRM2 PTGES3 EIF1 PARP14 RPS24 XRCC5 FABP5 TUT4 BTF3 PFDN5 SWAP70 CFLAR HLA-C RPS29 GBP1 RAN FUS SYNGR2 RPL6 REL RPL31 HNRNPDL EIF5B ST13 RPL38 HLA-E\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPL10 RPLP1 RPS12 RPS27 RPS14 TPT1 TMSB4X RPS19 RPL28 RPS23 RPS3 RPL39 RPL18A RPL11 RPL3 RPS6 RPL37 RPS15A RPS3A PTMA RPS13 RPS15 RPS7 RPL23A RPL14 RPL13A RPL30 RPL9 HLA-B RPL5 RPL29 RPL23 RPL6 RPS20 RPS21 RPL24 RPS24 ACTB RPS9 RPSA RPS29 RPL37A HLA-DRA UBA52 RPL36 RPL27 FTH1 RPL10A NACA H3F3A RPL22 RPL38 CD74 HLA-A PTPRC SARAF YWHAB LTB PNRC1 HLA-DRB1 EEF2 SERF2 RPL36AL RPL4 COX7C MS4A1 PABPC1 UBC TXNIP PNISR CYBA RIPOR2 S100A11 NEAT1 HLA-DPA1 SUB1 ATP5F1E GNAI2 EIF1 HMGB1 YBX1 HLA-E S100A6 MYL12A CCNI TOMM7 MTDH LSP1 BANK1 PPIA NPM1 HNRNPA2B1 SP100 EIF3H STK4 PFDN5 SUMO2 SSR2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 RPS12 TPT1 RPS27 RPS14 RPL10 RPS19 RPS23 RPL28 RPL11 RPS3 PTMA RPL30 RPL18A RPS3A RPS6 RPL13A RPS15 RPL37 RPS13 RPS24 RPL3 RPS7 TMSB4X RPL6 RPS15A RPL37A RPL9 RPL29 RPL23A RPL39 RPS9 RPS20 HLA-B RPL14 RPS21 RPL10A RPL5 RPSA RPL23 RPL36 UBA52 HLA-A RPL27 FTH1 NACA RPS29 RPL22 RPL24 RPL38 ACTB EIF1 HSP90AB1 HLA-DRA RPL4 CD74 H3F3A RPL31 TOMM7 HLA-DRB1 PFDN5 NAP1L1 HLA-C ATP5F1E DDX5 HINT1 SERF2 HSP90AA1 HMGB1 EEF1D SRGN JUND GBP4 PPIA TAGLN2 CD37 PTPRC REL TXNIP UBC NPM1 UBB VIM CFL1 LAPTM5 SON CALM1 HLA-F EMP3 RPL36AL SRRM1 PRRC2C HLA-E EIF4A2 BPTF TPM3 MORF4L1 SRRM2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 RPS12 TPT1 RPS27 RPS13 RPL10 RPL28 RPS19 RPL30 RPL13A RPS14 RPS23 RPS20 RPL3 RPS3A RPS3 RPS6 RPL9 FTH1 RPL11 HMGB1 PTMA RPL37A RPL5 RPL37 RPS7 RPS9 CD37 RPL18A UBA52 IGHM RPL23A RPL39 RPL38 RPL29 NEAT1 TMSB4X RPS15A RPS15 RPL6 NACA RPL14 PFDN5 HLA-DRA HLA-B KMT2E EEF1D RPL27 CXCR4 RPL10A GBP2 RPS29 RPL23 RPS21 PNRC1 TAX1BP1 JUND PABPC1 RPL36 RPL22 HLA-E LAPTM5 RPS24 REL TCF4 COX7C CD74 HLA-C CCNI FAM214A EIF1 GOLGB1 SP140 NUFIP2 HSP90AA1 RPSA RUNX1 ISG20 ASH1L TUT4 SET TRIM38 PDE4B PRKAG2 ATM NCF1 TBCA RBM25 AKAP13 N4BP2L2 NR3C1 OTULIN PPIA HINT1 PAK2 HNRNPDL ARID5B SLC38A1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPL10 RPS3A TPT1 RPL30 RPS14 RPLP1 RPS23 RPL3 PTMA RPS27 RPL13A RPS12 RPS13 RPL11 RPL18A RPL28 HLA-B RPS3 RPS19 UBA52 RPS6 RPS20 RPL9 RPS15A RPL37A RPL29 RPL39 RPL37 RPL10A RPL5 RPS9 RPL14 RPL38 HINT1 RPL6 RPS7 CXCR4 RPL23A FTH1 EEF1D JUND RPS21 RPL24 LTB IFI16 HSP90AB1 DEK TMSB4X RPS15 PFDN5 H3F3A NACA RPL36 SUMO2 RPS4Y1 TRIR SNHG7 CD37 EIF1 RPS29 RPL27 EEF2 N4BP2L2 HLA-A TOMM20 ISG20 CDV3 RPSA CD83 ZFP36L1 SON UBC RPL4 SLC25A6 RPL22 HNRNPF NT5C3A SSR2 RPL31 BCL11A TUBA4A LUC7L3 CFL1 CLEC2D BTF3 BRD4 HLA-DRA CTDSP1 VASP PNN ACAP1 PARP14 CD48 HNRNPA2B1 RPL23 SYNGR2 PNISR NCOR1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPL13 RPS12 RPS27 RPS23 RPL28 RPL10 RPS6 RPS14 RPS3A RPL13A RPL3 RPL18A RPL30 RPS19 RPS13 RPL11 RPL6 RPL29 RPS3 RPL9 RPL23A RPL37 RPS9 RPS15A RPL39 RPS21 RPS15 RPL36 RPL23 RPL24 RPS20 RPS29 RPL5 RPL37A RPS7 ACTB RPS24 NACA HSP90AB1 RPL14 HLA-A RPL31 PTMA RPSA HLA-B HSP90AA1 RPL27 PSMB9 PFDN5 RPL10A UBA52 RPL22 HNRNPA2B1 NAP1L1 YBX1 TMSB4X ARHGAP24 PSME1 RPL38 MS4A1 HINT1 EMP3 FTH1 IGHM CFL1 PTGES3 YWHAZ HLA-C BIRC3 POU2F2 EEF1D SET RPL4 BANK1 PPIA MIR155HG STAT1 ATP5MC2 CD37 EEF2 GAPDH HERPUD1 UXT GBP2 LYN COX7C KTN1 ID3 SLC25A6 NCL ZFP36L1 DDX5 TAGLN2 CFLAR SERBP1 RPS4Y1 ISG20\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPL13 RPS27 RPS3A RPS23 RPS12 RPS3 RPS14 RPL28 RPL11 HLA-DRA RPL30 RPL18A RPL13A RPL10 CD74 RPS15A TMSB4X RPS13 PTMA RPS7 RPL3 RPS6 HLA-B RPL37 RPS24 RPS15 RPS21 RPL29 RPL22 RPL9 RPL36 RPSA RPL23A RPS29 RPS9 RPL14 RPL10A RPS19 RPL5 RPL6 RPL37A UBA52 RPL39 HLA-A HLA-C RPL27 CD37 LUC7L3 RPS20 RPL23 PSMB9 CXCR4 ACTB SERF2 LAPTM5 HLA-E BTF3 YBX1 CD79A H3F3A HLA-DPA1 RPL4 RPL24 EEF1D GBP2 PCBP2 NACA FAM107B CYBA HSP90AA1 BANK1 PFDN5 CCDC50 TOMM7 UBC TOP1 RARRES3 HLA-DRB1 PARP14 SEPT7 UQCRB RPL31 EMP3 CCT5 TRIR PNISR PDCD4 CALM1 MTIF3 POLR2L RPL38 GBP4 IMP3 TCF4 ATP5F1E UBE2L6 HMGB1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPL13 RPS14 RPL13A RPL10 RPS12 RPL30 RPS3A PTMA RPS27 RPS3 RPL39 RPS6 RPS19 RPS15A RPS23 TMSB4X RPL18A RPL28 RPL11 RPL3 RPL27 RPL29 RPL37 RPL6 LTB RPS15 RPS7 RPS29 CD74 RPL37A RPS20 RPS21 RPL23A RPL9 RPL5 RPL36 HLA-B RPL24 CALM1 RPS13 UBA52 RPL23 RPL10A RIPOR2 RPL14 HLA-DRA MS4A1 IGHA1 NEAT1 RPL38 RPL4 SP100 NACA ARPC2 GBP4 RPS9 HLA-A PARP14 TOMM7 RPL22 GAPDH RPL31 YWHAZ CD37 SMCHD1 HLA-E UBE2D2 ATP5MG UBC H3F3A PFDN5 FTH1 FAM49B AES HLA-C ID3 HMGB1 PRRC2C LCP1 SRRM2 SCAF11 PNRC1 RNF213 YWHAB TPM3 ATP5F1E RPSA HINT1 ACTB TERF1 HP1BP3 CCNI CORO1A PSME1 TMEM154 PCM1 PNISR\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPL10 TMSB4X RPLP1 RPL13 RPS12 RPS3A RPS14 RPS27 RPL30 RPS3 RPL28 RPS23 RPL23A RPL3 RPL11 RPL18A RPS15A RPL13A PABPC1 RPL36 RPS20 RPS15 RPS7 RPS6 RPL37 RPL14 RPL5 RPS9 PTMA RPL38 GIMAP7 RPS19 RPL29 RPL39 RPS21 FTH1 RPS13 RPSA RPL9 RPL6 RPS24 RPL27 HLA-B RPS29 RPL22 CALM1 CXCR4 GIMAP4 NACA HLA-A SARAF RPL24 RPL37A GAPDH FXYD5 NEAT1 ACTB EIF1 S100A10 RPL10A PTPRC TOMM7 EMP3 RPS4Y1 RPL23 HLA-C UBA52 COX7C CCNI EEF2 RPL36AL SET IL32 LRRFIP1 CORO1A CDC42 CD2 RBM25 LTB LDHB CYSLTR1 ZFAS1 PNRC1 NOP53 SLC25A5 H3F3A SON DEK LAPTM5 S100A11 ATP5MG ATP5MC2 ARF1 AQP3 KIAA1551 RPL31 PFDN5 KLF3\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS27 RPL30 TPT1 RPL13 RPS19 RPS7 RPL5 RPL10 RPS6 TAF1D RPS24 RPL13A RPS3A RPL9 RPL18A RPL37 RPS13 RPS12 RPL28 EIF1 PRRC2C RPS14 GIMAP7 RPS15A RPS3 PTMA PTPRC SARAF BIRC3 RPL14 RPS23 RPL29 RPL31 GCC2 TMSB4X RPS15 RPL6 RPL37A H3F3B HLA-A AKAP9 RPL27 NACA PNRC1 FOXP1 NFKBIA HLA-B STK17A ZBTB1 RPS20 RPL36 TXNIP NUCB2 RPL22 RPS21 LEPROTL1 PSIP1 OSBPL8 ELF1 BATF RSBN1 NOL7 RPS29 CIRBP TCF7 RPL36AL TMEM245 ZC3H7A TANK RPSA HLA-E RPL23A LUC7L3 RPL39 CALM1 GADD45B BTF3 SKIL LEF1 RPL24 RSRC2 CDC5L SLC38A1 MIER1 XRN2 PHF20L1 OCIAD2 FTH1 RBM39 UBA52 IL7R EIF5 CYTIP RPL11 HLA-C HNRNPA2B1 ORMDL1 HBS1L\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPS12 RPL13 RPLP1 RPL10 TPT1 RPL28 RPS14 RPS3 RPS27 RPL30 RPS3A TMSB4X RPS6 RPS23 RPS15A RPL39 RPS13 RPL11 RPL18A RPL37 RPS15 RPL13A RPS19 RPL37A RPL9 RPL23A RPL5 RPL14 RPL3 RPS21 RPS7 RPL29 RPL36 RPS29 RPL23 RPS9 RPL38 LTB NACA RPS20 UBA52 RPSA PTMA RPS24 RPL6 RPL24 NEAT1 RPL10A RPL36AL HLA-A RPL22 GIMAP7 RPL31 TOMM7 IL32 EMP3 VIM RPL27 H3F3A HLA-B PABPC1 HSP90AB1 RPS4Y1 EEF1D HLA-C IL7R BTF3 NPM1 LDHB HINT1 PFDN5 PTPRC EIF1 CALM1 S100A6 CXCR4 ATP5F1E UXT SUB1 PIM1 NCL FKBP2 ACTB SET S100A4 SERF2 AES PNRC1 CISH EEF2 SF1 S100A11 KRAS HSPD1 C12ORF57 HSP90AA1 PPIB IKZF3 HNRNPK\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPS12 TPT1 RPLP1 RPL13 RPL10 RPL28 RPS27 RPS3 RPL3 RPS14 RPL30 RPL11 TMSB4X RPS19 RPS3A RPS23 RPS6 RPL18A RPL13A RPS15A RPL39 RPL14 IL7R RPL37 RPS15 RPS13 RPL23A RPS9 RPL29 RPL5 RPS7 RPS21 RPS24 RPL9 RPS29 LTB RPL10A HLA-B UBA52 RPL24 RPL6 S100A4 IL32 RPL38 NACA RPS20 RPSA VIM RPL36 RPL23 RPL37A RPL22 NEAT1 PTMA RPL27 NOP53 PTPRC HLA-A EEF1D TOMM7 RPL31 GNAS S100A6 HSP90AA1 RPL36AL FTH1 PPIA S100A11 COX7C GIMAP4 PABPC1 HLA-C PFDN5 ACTB GIMAP7 HINT1 PRRC2C YBX1 GAPDH TXNIP ARL4C H3F3B UQCRB EIF1 EMP3 ITM2B RPL4 RPS4Y1 LDHB NPM1 H3F3A ATP5F1E EEF2 ARHGDIB CALM1 BTF3 ARPC2 SON SERF2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 TMSB4X RPLP1 RPL13 RPS27 RPS3 RPS12 RPL10 RPS14 RPL28 RPL11 RPL13A RPS3A RPS19 RPL18A RPS15A RPS6 RPL3 RPL30 RPS23 ACTB RPL39 RPL6 RPL14 RPL9 RPL37A IL7R RPL37 S100A4 RPS13 RPL29 IL32 RPS15 HLA-B RPS9 RPS7 NACA RPS21 RPL5 PTMA RPL23A RPL36 RPL10A LTB RPS20 RPL31 RPSA UBA52 RPS24 VIM PFDN5 RPL27 RPL23 RPS29 RPL38 HLA-A STAT1 GIMAP7 HINT1 CALM1 GBP5 ANXA1 RPL24 S100A11 RPL36AL RPL22 HLA-C ATP5F1E GAPDH FXYD5 H3F3A HNRNPU S100A6 HSP90AA1 GBP1 PTPRC S100A10 EIF1 RPS27L NCL HSP90AB1 HNRNPA2B1 MYL12B CFL1 ITM2B PNRC1 NEAT1 YBX1 H3F3B FTH1 PTGES3 EEF1D ARPC2 SERBP1 PRRC2C MYL12A ENO1 HLA-E SLC25A6\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL10 RPL13 TPT1 RPS12 RPS14 RPL13A RPS3 RPL28 RPL30 RPL3 RPS19 RPS3A RPS27 RPL11 RPS15A PTMA RPL39 RPL9 RPS7 RPL37 RPS6 RPL14 RPL29 RPS23 RPL23A RPS24 RPL6 RPL18A TMSB4X RPL5 ACTB RPS20 RPS29 RPS13 RPS15 RPL10A RPS21 RPL36 RPL23 RPL37A S100A6 HLA-B RPSA UBA52 CD2 LTB PABPC1 RPS9 HLA-C RPL24 IL32 RPL22 HLA-A RPL36AL NACA HSP90AB1 PFDN5 VIM RPL38 RPL4 RPL27 RPL31 TOMM7 S100A4 ATP5F1E STAT1 CD3D SERP1 GIMAP7 BTF3 NOP53 PRRC2C S100A11 CALM1 PPIB SLC25A6 ARL4C HSP90AA1 KTN1 OST4 EEF1D CFL1 NAP1L1 CYBA COX7C CAST PDIA3 KLF6 YBX1 SUMO2 KIAA1551 ITM2B LMAN1 ANXA1 ANP32E SYNE2 NEAT1 SEC61G\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TMSB4X TPT1 RPL13 RPS27 RPL10 RPS19 RPL30 RPS14 RPS3 IL7R RPL28 RPL18A RPS23 RPL11 RPS15A RPS12 RPS3A RPL13A RPL39 RPS6 RPL3 RPL14 RPL37 RPS7 RPL23A RPL29 LTB UBA52 RPL9 RPS9 RPL24 RPL27 RPSA PTMA NACA RPL6 RPS20 ITM2A RPL36 RPL23 HLA-B RPS24 HLA-C RPL10A S100A4 FTH1 RPS15 ITM2B HLA-A RPL37A RPL31 RPS13 EIF1 RPL22 RPS21 PTPRC NEAT1 RPL36AL RPS29 PPIG RPL5 RPL38 ANXA1 HINT1 NDUFV2 ARHGDIB UBC TOMM7 PPIA TNFRSF4 BTF3 STK4 S100A6 GIMAP7 S100A10 LINC00861 GNAI2 CYBA TRAT1 SRGN MPHOSPH8 H3F3A CORO1A ATP1B3 RBM25 S1PR4 YBX1 ETS1 EMP3 EIF4G2 SMCHD1 SON COMMD6 AKAP9 PNISR SYNE2 LCK VIM\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X PNRC1 RPLP1 PTMA RPS7 TPT1 HLA-B RPL18A RPS27 RPL13 RPS13 RPL37A RPS14 GIMAP7 RPL3 RPL23A HLA-A RPL13A RPS12 RPS3A HINT1 RPL11 RPL10 HLA-C RPS19 RPS20 RPL30 BIRC3 RPL28 LTB RPL6 RPS15A RPL36AL RPL14 SARAF ZFAS1 DDX5 PTPRC UBC RPS23 YBX1 DEK HNRNPU RPS15 RPL9 STK17A RPL27 SFPQ RBM39 UBB ATP6V1G1 EMP3 SNRPG H3F3B RPSA PNN EIF1 H3F3A ITM2B HLA-E RPL24 TAF1D RPL39 NACA PSME1 UBA52 MIER1 CIRBP RPL38 SRRM2 ARRDC2 FTH1 ERBIN NCL CXCR4 RNF114 PABPC1 LEPROTL1 HIST1H4C RPL37 PPIA HSP90AA1 HNRNPA2B1 EIF5 RPS9 COX6A1 SF1 RPS21 NFKBIA RPL36 EIF5A JUND DDX46 RSRP1 LYSMD2 MSL3 MYCBP2 SERBP1 CDC42\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPL13 RPLP1 RPS19 RPL10 RPS12 RPS14 RPS15A RPL28 IL7R RPS3A RPL3 RPL13A RPL30 RPS27 RPS6 RPS3 RPS23 RPL11 RPL14 RPL18A TMSB4X RPL23A RPL29 RPS13 RPS7 RPL5 RPL9 PTMA RPS9 RPL39 RPL37A UBA52 RPS21 RPS15 RPL6 RPL37 EMP3 RPL4 RPS20 HLA-B PTPRC RPL38 RPL36 RPL10A RPS24 RPL24 NACA LTB RPS29 HLA-C GIMAP4 RPL22 CFL1 HLA-A GIMAP7 BTF3 ITM2B FTH1 SARAF PFDN5 PABPC1 RPL31 RPSA LDHB NPM1 SERF2 RPL27 IL32 FAM107B STK38 NAP1L1 EEF1D CNOT6L CD2 PNRC1 RPL23 BIRC3 RPL36AL JAK1 NCL TOMM7 CDC37 PDCD4 CALM1 ARL4C ATP5F1E YBX1 SORL1 STK17B CAST EEF2 SP140 ZFAS1 EIF1 TRIR SEPT7 FNBP1 SOD1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPS12 RPL13 RPLP1 RPL10 RPS14 RPS23 RPS27 RPL30 RPS15A RPS3A RPL3 RPS19 RPL39 RPS13 RPL28 RPL11 RPS3 RPS6 RPL37 RPL18A RPL13A RPS15 RPL9 LTB RPL37A RPL23A RPS24 RPL36 TMSB4X RPL29 RPL5 RPL24 RPS21 RPS7 RPS9 RPL14 RPL23 RPS29 RPL22 RPSA PTMA PFDN5 RPL38 RPL10A NACA HLA-B RPL6 RPL27 CXCR4 PNRC1 UBA52 NPM1 PPIA PTPRC COX7C RPL36AL BTF3 SERF2 ATP5F1E SLC25A6 SRSF10 PABPC1 SUMO2 FTH1 H3F3A HINT1 ARL4C H3F3B CD3D PSIP1 ADD3 MYL12A APRT EIF3F HSP90AB1 PRRC2C HNRNPA3 EEF2 PNISR CNBP HLA-A RPS4Y1 ARL6IP5 HLA-E C12ORF57 RPL4 TCEA1 EIF5B HNRNPA2B1 SNHG8 EIF4A2 HMGN1 HSP90AA1 NSD3 GPX4 EVL UBE2B DEK\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPL13 RPL10 RPS12 RPS27 RPL13A TMSB4X RPL11 RPL28 RPS14 RPS3A RPL30 RPS15A RPL18A RPS6 RPS3 RPS23 RPS13 RPL29 RPS19 RPL3 RPS20 RPL39 RPL6 RPL5 RPL23A RPL37 RPS24 RPL9 RPS29 RPS21 RPS9 RPL37A RPS15 RPL14 RPL10A UBA52 RPL31 RPS7 RPL22 ANXA1 LTB RPL38 RPSA RPL36 NACA RPL23 RPL4 PTMA RPL27 ACTB HLA-A RPL24 IL32 HLA-C HLA-B S100A6 GIMAP4 TOMM7 MT2A NAP1L1 S100A11 EEF2 HINT1 H3F3A KIAA1551 HNRNPA2B1 YBX1 RPL36AL ARPC2 EEF1D N4BP2L2 SERF2 LDHB S100A4 EIF3E COX7C TXNIP GIMAP7 GAPDH SARAF STAT1 ITM2B UQCRB HMGB1 BTF3 PABPC1 SON RNF213 GBP4 SKP1 GNAS NOP53 DDX46 PNRC1 DDX5 CLEC2D GBP2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL10 RPS12 RPL13 TPT1 RPL28 RPS14 TMSB4X RPS6 RPS3 RPL18A RPL30 RPS19 RPS23 RPS27 RPL11 RPL13A S100A4 RPS15 RPL14 RPS13 LTB RPL29 RPS21 RPL23A RPL39 S100A6 RPL3 RPL37A RPL37 RPS7 UBA52 RPS24 RPS15A PTMA RPL6 RPS3A VIM RPL5 RPSA IL32 RPL10A FTH1 HLA-B RPL36 IL7R S100A10 CALM1 RPS20 RPS9 NACA RPL27 RPL23 PTPRC RPL24 RPS29 RPL9 RPL31 HSP90AA1 HLA-C ACTB NEAT1 HSP90AB1 ITGB1 HLA-A RPL22 GIMAP7 RPL38 S100A11 ITM2B STAT1 AHNAK GBP5 LIMS1 HINT1 PFDN5 HNRNPA2B1 YBX1 TOMM7 H3F3A ARL4C LDHB ATP5F1E SAMHD1 SERF2 RPL4 SRGN MYL12A CYBA GTF3A SYNE2 ARPC2 COX7C SEPT7 HNRNPU UBC CD3G NPM1 TAGLN2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL10 RPS12 TPT1 RPL28 RPLP1 RPS14 RPL13 RPS27 RPL11 RPS15A RPS3 RPL13A RPL30 RPL18A RPS15 RPS23 RPS3A RPL37 RPL36 RPL23A RPL9 RPL39 RPS13 RPL14 RPS29 RPS19 RPL3 RPS21 RPS6 RPL29 RPS20 RPS7 TMSB4X RPS24 RPL38 RPL27 VIM RPSA RPL31 RPS9 UBA52 RPL10A RPL24 PTMA RPL5 RPL23 HLA-A HLA-B IL32 RPL6 GIMAP7 RPL37A ATP5F1E HLA-C NACA RPL22 EMP3 LTB FTH1 HSP90AA1 LDHB SRRM2 RPS4Y1 ITM2B PFDN5 ACTB EEF1D S100A4 TOMM7 CYLD GNAS IL7R CD3E CHCHD2 FXYD5 ARL6IP5 HSP90AB1 HNRNPK NAP1L1 EIF1 SERF2 RPL36AL PTPRC AES PPIB CALM1 HINT1 H3F3B ITGB1 SARAF CD3D OST4 RPL4 FKBP2 ATP5MG CKLF HSPD1 PABPC1 ARHGDIB\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL10 RPLP1 RPL13 TPT1 RPS14 RPS12 TMSB4X RPL28 RPS3A RPS27 RPL30 RPS3 RPS23 RPL13A RPL14 RPL18A RPS19 RPL3 RPL29 RPL11 RPL37 RPS15A RPS13 RPS15 RPL39 RPS6 RPSA RPL23A RPS9 RPS29 S100A6 RPS24 PTMA RPL36 RPL38 RPL37A VIM RPL24 RPS21 RPL6 RPL10A RPL9 RPL5 RPL31 UBA52 S100A11 RPL22 HLA-B RPL23 LTB RPS20 RPL27 RPS7 NACA HLA-C EMP3 HINT1 HSP90AB1 IL7R HLA-A H3F3B RPL36AL EIF1 IL32 NEAT1 ACTB TOMM7 LDHA ITGB1 ARL6IP5 GAPDH COMMD6 PPIA TMEM238 HLA-E EEF1D S100A10 SYNE2 MYL12A ATP5F1E S100A4 PTPRC PCM1 RPL4 GIMAP7 FTH1 H3F3A PABPC1 CFL1 CLEC2D SERF2 CHCHD2 BTF3 HNRNPD EZR HNRNPA2B1 SRSF7 CD48 SARAF\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPS12 RPL10 RPLP1 RPS27 TPT1 RPS6 RPS15A RPL30 RPL3 RPL28 RPS3 RPS14 RPS15 RPL11 RPS23 RPL13A RPL9 HLA-B RPS3A RPL23A RPS29 RPL14 RPL37 RPL39 RPL23 RPS13 RPL18A TMSB4X PTMA VIM RPL6 RPS24 RPL29 RPS7 RPL10A LTB RPL27 RPL36 RPS19 RPS21 RPL24 UBA52 RPS9 RPL38 S100A6 GIMAP7 RPS20 RPL5 RPL37A NACA SMCHD1 IL32 RPL31 EIF1 RPL4 HLA-A EEF1D STAT1 RPL22 GNAS HINT1 PFDN5 PABPC1 GIMAP4 RPSA ATP5MG RPL36AL GBP5 CALM1 NCL TGOLN2 ATP5F1E NEAT1 ZFAS1 FTH1 CYLD ANXA1 S100A11 SYNE2 OST4 HMGB1 KIAA0040 ACTB ITM2B NOP53 HLA-C LDHB SP100 HNRNPA2B1 PLP2 TOMM7 CXCR4 IKZF1 PNRC1 CD247 PRRC2C H3F3B DDX5\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS12 RPL13 RPL10 TPT1 RPL28 RPS14 RPS19 TMSB4X RPS23 RPS27 RPL30 RPL13A RPS3A RPL11 S100A4 RPS3 RPL3 RPL14 RPL18A RPS15A RPL23A RPS15 RPL39 LTB RPS13 RPS6 RPS21 RPL37A RPSA RPL29 RPS24 RPL36 RPL6 RPS29 IL32 RPL9 PTMA VIM UBA52 NACA RPL5 RPL37 RPL10A RPS9 RPL23 HLA-B RPS20 RPL24 RPL38 RPL31 RPL22 RPL27 HSP90AB1 RPS7 GIMAP7 HLA-A S100A6 ACTB RPS27L RPL36AL CALM1 RPL4 CFL1 IL7R EMP3 GAPDH BTF3 NAP1L1 HINT1 NEAT1 PTPRC NPM1 MYL12A ATP5MG S100A10 HLA-C ITM2B HSP90AA1 PPIA S100A11 SUB1 SERF2 SERBP1 UQCRB LDHB PFDN5 EIF3E SUMO2 H3F3A EDF1 COX7C RPS4Y1 C1QBP SSR2 TOMM7 CYBA NCL EIF4B\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 NFKBIA EIF1 TMSB4X RPLP1 GADD45B PTMA RPL10 H3F3B UBB DDX5 PNRC1 HSP90AB1 SLC38A2 RPS12 HLA-B NCL TUBB4B TAF1D TPT1 FTH1 RPL6 H3F3A UBC DYNLL1 RPS19 RPS27 ATF4 RPL30 SON RPL18A PRPF4B SRSF3 SRSF7 RPL36 HMGB1 SNHG12 RBBP6 RPS13 NUS1 SET EIF4A2 ARRDC2 ACTB RPL13 YY1 GOLGB1 IER5 N4BP2L2 UPF3A YBX1 RPL24 RPL13A KMT2A RPS20 SMCHD1 BIRC3 NFKB1 EPC1 RBM39 PCF11 JUND HEXIM1 EEF2 ZFAS1 SKIL CNOT6L CD69 RPL23A CHD4 RPL4 RPS24 PTBP1 SRGN RPS29 DDX3Y TBC1D15 USP16 KTN1 HNRNPU EIF3H RPL9 LRRFIP1 HSPA5 TNFAIP3 CLK1 DNAJA1 HNRNPH1 ERO1B RPS14 PRDX1 ZC3H15 RPL3 GADD45A HSPD1 CCAR1 STK17A IL7R OSBPL8 DHX9\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL10 TMSB4X RPS12 RPL13 TPT1 RPL13A RPL28 RPS14 RPS27 RPS23 RPS15A RPL30 RPL37 RPS3A RPS19 RPS24 RPL6 IL7R RPS6 RPL39 PTMA RPL11 RPL14 RPS21 RPL29 RPS13 RPL3 RPS3 RPL18A RPS7 RPL5 RPL23A RPS9 NACA HLA-B HLA-A VIM RPS29 RPL37A ITM2B RPL9 RPL24 RPL36 RPSA RPS15 PFDN5 COX7C S100A6 HINT1 RPL23 ACTB UBA52 RPL10A S100A4 FTH1 RPL22 RPL38 LTB CALM1 GIMAP7 HLA-E RPS20 BTF3 YBX1 HSP90AB1 ESF1 PTPRC EEF1D SERP1 FXYD5 HLA-C SMCHD1 ANXA1 NAP1L1 AES TXNIP RPL36AL EIF1 EMP3 GNAS SNU13 DDX46 PPIA HSP90AA1 GAPDH UBC UQCRB MZT2A PNISR ATP5MC2 CORO1A CD3D S100A11 SSR3 C12ORF57 HNRNPA3 TOMM7 SUMO2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X S100A4 S100A6 RPLP1 TPT1 ACTB RPL13 RPS12 IL32 PTMA VIM LTB RPL10 RPL28 RPS27 RPL30 RPL13A RPL37A RPS6 HLA-C HLA-B HLA-A RPL38 RPL18A HSP90AA1 RPS14 RPS24 RPS23 S100A11 RPS19 RPL37 RPS3A RPL11 RPS3 MYL12A HSP90AB1 RPL3 GAPDH RPS20 EMP3 RPL14 RPS15A S100A10 RPL23A RPL24 RPL5 RPS7 RPL39 RPSA RPL36 RPL31 RPL23 CALM1 RPS21 RPL9 UBA52 SERF2 YWHAB RPS9 RPL6 RPS15 ATP5F1E CFL1 RPL27 IFITM2 RPL10A RPL22 PKM MYL12B PTPRC CD3D YBX1 ENO1 ITM2B MRPS6 EIF1 RPS29 TPM3 FTH1 PSMA7 ATP5MG RPS13 BIRC3 RPL29 HINT1 DDX5 PGK1 ARPC2 RPL36AL LGALS3 CORO1A CD2 EVL PSME1 SARAF HLA-E SEPT7 CD3E YWHAZ\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL10 RPLP1 RPS12 RPL13 TPT1 FTH1 RPS14 RPL30 RPL28 RPS27 RPS3 TMSB4X RPL11 RPS15A RPL13A RPS15 RPS3A RPS19 RPL3 RPL18A RPS23 PTMA RPL14 PABPC1 HLA-B RPL23A RPS13 RPS21 RPL29 RPL39 IL7R RPL9 RPS9 RPL36 PTPRC RPL37 RPS24 RPS6 RPS20 RPSA RPL24 NACA UBA52 RPL5 RPS29 RPL27 S100A11 RPL6 HLA-A RPL23 HINT1 ACTB RPL31 PNRC1 RPL37A VIM NEAT1 CXCR4 EIF1 EEF1D RPL38 EMP3 NR3C1 CALM1 SARAF TOMM7 RPL10A RPS7 PFDN5 H3F3A S100A6 LTB HLA-E PIK3R1 RPL36AL GIMAP7 PPIA TLN1 COX7C GIMAP4 ATP5F1E ITM2B SRSF7 EEF2 PPIB GAPDH H3F3B FXYD5 RGS10 UQCRB IKZF1 ARPC2 LDHB ANP32B RGCC ARL6IP5 EIF3E S100A4 SERBP1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X RPLP1 RPL14 RPL13A HLA-B RPL23A RPS14 RPS7 RPL30 RPL36 RPS13 RPL6 RPL37A RPL28 RPS19 RPS15A TPT1 RPL24 RPS27 RPL39 RPL18A RPL3 RPS15 RPL38 RPL10 RPS12 SON IL7R RPL13 HLA-A RPL11 RPL9 BTF3 RPS6 FTH1 PTMA RPS24 GIMAP7 RGCC H3F3A PNRC1 TAX1BP1 EIF1 FGFR1OP2 HNRNPU RPL5 RPL23 HINT1 RPS23 RPS27L DDX17 SRRM1 COX6A1 RPL36AL UBA52 H3F3B RPS3A RPS20 DDX21 PHIP HLA-C RPL29 SCAF11 SNX6 EMP3 RAB21 YY1 TLK1 CD3D UBC DEK MYL12B SLC3A2 RPS9 HNRNPA2B1 SET HNRNPA3 HMGB1 STK4 CREBRF COX7C RPL22 ANKRD11 PPIG SARAF PSMA7 HECTD1 CCDC58 CD3G LTB SOD1 NDUFA4 RPL37 ATRX DDX5 TCF7 NOL7 RSL24D1 GNAS\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TPT1 RPS19 RPL13 RPS12 RPL10 RPL28 RPLP1 RPS14 RPS3 RPS27 RPL3 RPL13A LTB RPS23 RPS15A RPL30 TMSB4X RPS6 RPL11 RPL9 RPS3A RPL14 RPL23A S100A4 RPL18A RPS15 RPL29 RPS13 RPL23 MALAT1 S100A6 RPL37 RPL39 RPL6 RPL5 RPL37A RPL10A RPS7 RPSA RPS9 RPS24 RPL31 RPS21 RPS20 IL32 CALM1 PTMA RPL24 RPL36 RPL38 NACA HSP90AB1 HLA-B UBA52 RPS29 VIM RPL27 YBX1 RPL22 HSP90AA1 RPL4 ACTB IL7R PABPC1 AQP3 ENO1 RPL36AL RPS4Y1 COX7C S100A11 NPM1 ATP5MG LDHB ARL6IP5 ITM2B PFDN5 EEF2 EMP3 EEF1D HLA-A S100A10 SERF2 SLC25A3 PPIB NAP1L1 BTF3 HINT1 EIF1 PPIA HNRNPA2B1 RIPOR2 OST4 SUMO2 GIMAP7 MAL ITGB1 COX7A2 EIF3G TOMM7 SON\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 TPT1 RPS12 RPL10 RPS27 RPS19 RPL28 IL32 RPL11 LTB RPS3A HLA-B RPS14 RPL30 RPL18A RPL13A RPL9 RPS15A RPS6 RPS3 RPL39 RPS15 RPL10A RPL37A RPS13 RPS23 RPL3 RPL6 RPL23A RPS29 RPS21 TMSB4X RPL24 HLA-A RPL14 RPS7 RPL29 RPS20 RPL5 HLA-C RPS24 PTMA RPSA RPL37 RPS9 ACTB RPL23 RPL22 H3F3A RPL27 RPL38 GBP5 EMP3 HSP90AA1 HNRNPA2B1 HINT1 BTF3 EEF1D RPL31 EIF1 FTH1 RBM17 CHCHD2 HSP90AB1 ARHGDIB ATP5F1E PFDN5 S100A6 FXYD5 NACA UBA52 SUB1 PSMA7 RPL36 LIMS1 SLC25A6 ISG20 PSME1 GAPDH SOD1 SERF2 DDX18 TXN SUMO2 LGALS3 PRELID1 BIRC3 SRRM2 CD3D GBP1 COX7C PTPN7 DDX5 CMTM6 SET ARPC2 NFKB2 SLC25A3\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPLP1 RPL10 RPS12 RPS14 RPL13A RPL28 TPT1 RPS19 RPS3A RPS27 RPS3 RPS23 RPL30 RPL3 RPL18A TMSB4X RPS6 RPL14 RPL11 RPS15A RPL36 IL7R RPS15 RPL29 RPS13 RPL39 RPL9 RPS20 RPL23A RPS24 RPL5 RPS7 PTMA RPSA RPL37A RPS9 RPL24 UBA52 RPL37 RPL10A RPS21 RPL27 NACA RPL22 RPL6 VIM IL32 RPL31 RPS29 EIF1 RPL23 S100A6 HLA-B LTB RPL38 S100A4 PFDN5 RPL4 RPL36AL DDX5 H3F3A PABPC1 HSP90AB1 GAPDH CALM1 SERF2 EEF1D NPM1 HINT1 NAP1L1 ACTB YBX1 DDX17 ANXA1 ARPC2 GIMAP1 LDHB ZFAS1 ITM2B SEPT6 COX7C SSR3 ITGB1 FXYD5 CFL1 FTH1 EIF3E SYNE2 PTPRC GIMAP7 HLA-C PRRC2C RPS27L EEF2 AHNAK TPM3 CD55 PNRC1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X EIF1 RPL10 NFKBIA SRRM2 RSRC2 GIMAP7 RPS9 RPL6 NOP58 RPS13 SRRM1 RPL11 TPT1 ATF4 DDX5 CHD1 SFPQ H3F3A H3F3B RPL13A BIRC3 SRSF3 RPS12 RPS19 SERBP1 CYLD RPS7 RBM39 RPLP1 RPS27 PNN TAF7 ACIN1 GADD45B STK17A RPL36AL KMT2E HLA-B HIST1H4C SRSF7 EIF5 RBM8A DNAJA1 PRRC2C PNRC1 ARL6IP5 RPS3 CNBP RAB21 PPIG HNRNPDL NACA PIM3 RPS15 NAP1L1 PPIA RPL13 UBE2B NCL HSP90AB1 ZFAS1 PABPC1 DDX46 ARRDC2 AES RPL23A CCNL1 CXCR4 HNRNPA2B1 TLK1 ARID4A RPL37A MBNL1 RPL24 RPS29 EIF5A YWHAB STK17B RPL3 ARID4B IL32 SON PRPF38B HNRNPD EIF3F DDX6 CACYBP ARPC2 SNHG15 MORF4L1 RPL5 CDKN2AIP SAP18 RBM25 HNRNPA3 ATP5MG RPL39 RPS3A\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPL13 LTB HLA-B RPL13A RPL10 EIF1 RPS12 RPS14 RPL11 RPS19 PTMA RPL18A RPL28 RPS15 RPL36 RPS3A RPL3 RPS15A RPS7 RPL30 RPS6 RPL24 RPL14 HLA-A RPS27 RPL23 UBA52 RPL9 IL7R RPS13 PNRC1 RPL29 RPS3 EIF5B HLA-C ANXA1 RPL23A RPL39 RPL6 SERF2 RPL38 PRRC2C RPL27 RIPOR2 RPS23 H3F3B CALM1 IL32 PTPRC ACTB ATP5F1E YWHAB RPL5 HLA-E AES RPS29 HSP90AB1 RPL31 RPL37A HNRNPF SCAF11 ITM2B NCL SAMD9 HINT1 RPS21 RPS20 SLFN5 PNISR EMP3 RPS24 TMSB4X GIMAP7 RPS9 ARPC2 CDC42SE2 HSP90AA1 COX6B1 GBP5 PFDN5 SEPT7 SEPT6 CFL1 MYL12A EZR SNRPG VIM GIMAP4 NACA RPSA SUB1 TRAF3IP3 PSMA7 ARHGDIB CDV3 RPL10A TPM3\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 TPT1 RPLP1 RPL10 RPS12 RPS19 RPL28 RPL13A RPS27 RPS6 RPS14 RPS3A RPL39 RPS23 RPS15A TMSB4X RPS15 RPL18A RPS3 RPL29 RPL11 RPL3 RPS13 RPL6 RPL37 RPL30 RPL23A RPL24 RPL14 RPL37A RPS21 RPS9 RPL5 RPS7 RPL10A RPL38 UBA52 RPSA RPL9 PFDN5 RPS24 RPS20 PTMA RPS29 RPL31 RPL36AL FTH1 NACA RPL36 NPM1 LTB RPL23 NEAT1 RPL4 RPL27 S100A6 PPIA ATP5F1E COX7C SARAF HLA-B IL7R HLA-A RPL22 EIF1 PSMA7 EEF1D RBM25 ACTB EEF2 HMGB1 EZR ZFAS1 CALM1 PABPC1 H3F3B HSP90AB1 NCL H3F3A HLA-C SRSF5 OST4 KRT1 IKZF1 XRN2 EMP3 RPS4Y1 PBRM1 CYBA SON HINT1 RPS27L PNRC1 IL32 LUC7L3 RBM39 SERP1 SAMD9 PTPRC\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPL13 TMSB4X RPS12 RPS19 RPL10 RPL13A RPS27 RPS14 RPL28 RPS15A RPS3A RPL30 RPL11 RPL37A RPS3 RPS23 RPL14 RPL37 RPS15 RPL18A RPL9 RPS6 IL7R PTMA RPS13 RPL39 RPL3 RPS24 HLA-B RPS9 ACTB RPL23 RPSA RPL29 RPS21 RPL23A RPL27 RPL5 UBA52 HNRNPA2B1 RPS7 RPL24 NACA RPL6 RPL31 LTB RPS29 RPL36 HLA-A IL32 RPS20 HSP90AB1 GBP4 NPM1 S100A6 RPL10A GIMAP7 BTF3 RPL22 HINT1 GAPDH NAP1L1 RPL36AL ENO1 UQCRB HLA-C UBB CALM1 TOMM7 EEF1D EMP3 SYNE2 PPIB PABPC1 EEF2 LCP1 SERF2 RPL38 VIM DDX5 PRDX1 FTH1 TPM3 PPIA ZFAS1 TCF7 GBP2 SON PTPRC SARAF CYBA HMGB1 COX6A1 SERBP1 UBXN1 PFDN5 PSME1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPL10 TPT1 RPS12 RPLP1 RPL13A RPS3A TMSB4X RPL11 RPL28 RPS27 RPS14 RPL30 RPS23 RPS6 RPS7 RPL18A RPL23A RPS3 RPL29 RPL3 RPS15A RPS19 RPL6 RPS9 RPS15 PTMA RPS24 RPL5 RPL37 RPL37A RPL9 RPL14 RPS13 LTB RPS20 RPL39 HLA-B RPSA RPS21 RPS29 RPL10A RPL24 ACTB NACA RPL31 RPL36 UBA52 RPL27 RPL4 RPL38 RPL23 IL32 HSP90AB1 CALM1 EEF1D EEF2 RPL22 NAP1L1 EIF1 PABPC1 PFDN5 NCL SARAF TOMM7 HLA-C IKZF3 LDHB YBX1 HLA-A EIF3E FTH1 PTPRC RBM39 GIMAP7 UQCRB SLC25A6 TMEM123 KIAA1551 H3F3B S100A6 H3F3A CD3D RNF213 DDX5 EIF3A BTF3 RIPOR2 SUB1 SEPT7 NOP53 COMMD6 FYB1 RSL24D1 RPS4Y1 ITGB1 SERF2 FAM107B PNRC1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL10 TPT1 RPS12 PTMA RPS19 HSP90AA1 RPL39 RPS3A RPS27 RPLP1 RPS6 RPL11 RPL37 EIF1 RPL30 UBB RPL13 RPL5 RPS3 RPL29 RPS23 SRSF7 HSP90AB1 RPL14 RPL28 RPS13 RPL24 RPS15 RPL31 RPS14 EZR RPL9 RPL18A SRSF3 FUS DNAJA1 RPS21 PABPC1 RPS7 TMSB4X TXNIP PNRC1 TLE4 RPL13A CXCR4 UBC TRA2B DDX5 PHF3 TSC22D3 RPS15A RPL38 RPL37A RPL23 RPL10A H3F3B ZC3H6 RPS24 DYNLL1 RPS29 RPL22 ARID4B CCNT2 RBM39 ESF1 CHORDC1 DDB1 RPS9 RPL3 RPL6 SRRM1 HMGB1 ELF1 SMAP2 SRSF5 FOS RPSA CITED2 HNRNPH1 HNRNPA3 RPL36 HSPA1B RPS20 KHDRBS1 KDM2A RPS4Y1 POLR3D SBDS AC087239.1 MDM1 SNHG15 C6ORF62 NSD3 RPL22L1 SBNO1 EEF2 RAD21 HLA-C KLF6\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPL13 RPLP1 RPS12 RPL10 RPS14 RPS27 RPS6 LTB RPL28 RPL13A RPL30 RPS3A RPS15A RPL18A RPL11 RPL39 PTMA RPS13 RPS19 RPS3 TMSB4X RPL5 RPL23 RPL29 RPL37 RPS24 RPS15 RPL14 RPS21 RPS7 RPL37A RPSA RPL3 RPS29 RPL6 RPL22 RPL10A RPL36 RPL23A RPL9 RPS9 RPL24 RPS20 RPS23 UBA52 RPL38 SLC25A6 VIM PABPC1 PFDN5 RPL31 RPL27 ACTB HINT1 FTH1 NACA SERF2 PTPRC HLA-B MYL12A SLC25A3 NPM1 RPL4 HSP90AB1 CALM1 NCL ARL4C TOMM7 SUMO2 S100A6 RPL36AL ATP5F1E ITM2B UQCRB ANP32B DDX5 CFL1 UBC EIF1 SYNE2 HLA-C CACYBP CD44 CDV3 RIPOR2 EIF3A NAP1L1 C9ORF78 HLA-A UBXN1 GIMAP4 CORO1A NDUFS5 HNRNPU EEF2 TRAT1 GIMAP7 CCNI\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL10 TPT1 RPL13 RPS12 RPL28 RPL30 RPS3A RPS14 RPS15A RPL18A RPL13A RPL29 RPL3 RPS19 RPL11 RPS23 RPS13 RPS3 TMSB4X RPL39 RPS6 RPS27 PTMA RPL37 RPL6 RPS7 RPS20 RPS24 RPL9 RPL5 RPS15 RPL14 RPL23 RPL36 UBA52 RPS21 RPL23A RPSA RPL37A HINT1 RPL10A RPS9 NACA GIMAP7 HLA-B RPS29 ANXA1 RPL24 RPL22 EEF1D S100A4 SARAF HSP90AB1 RPL31 RPL27 H3F3A RPL38 PTPRC ACTB ARPC2 FTH1 NPM1 ATP5F1E CFL1 IL32 LDHB SET IL7R CALR ITM2B EIF2S2 BTF3 HSP90AA1 SLC25A6 HLA-C YWHAB GIMAP4 CD3E HMGB1 PPIB C12ORF57 HLA-A EIF1 NUCKS1 GNAS RPL4 SMC3 PRRC2C EEF2 LDHA PRDX1 HNRNPA2B1 ARL4C PPIA LTB COX20 RPL36AL ARHGDIB\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPL10 RPLP1 TPT1 RPS12 RPS27 RPS14 RPS3A RPL11 RPL13A RPS15A RPL30 RPL28 RPS3 RPL39 RPS6 RPL37 RPS23 RPL3 TMSB4X RPS19 RPL18A RPL9 RPL23 RPS15 PTMA RPS13 RPL14 RPL29 RPL37A RPS9 RPS21 RPS29 RPS20 RPL23A RPL5 VIM RPL22 RPS24 RPL36 ACTB IL7R RPL27 RPL6 RPL10A RPS7 UBA52 RPL38 HLA-B RPSA S100A11 RPL24 IL32 LTB NCL HINT1 RPL31 S100A6 NACA HSP90AA1 HLA-C SERF2 HSP90AB1 PPIA ARL4C NPM1 S100A4 HLA-A MYL12A RPL4 CFL1 YBX1 FTH1 ATP5F1E H3F3B PFDN5 GAPDH SUB1 LDHB SNRPD2 TPM3 H3F3A PSMA7 EEF1D ITGB1 CD2 SLC25A6 ARL6IP5 PPIB NOSIP HLA-E DDX5 ARPC2 COX7C EMP3 BTF3 TOMM7 GIMAP4 SRRM2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL10 RPL13 RPS12 TPT1 RPL28 RPS14 RPS3A RPS3 RPL11 RPS27 RPS23 RPS6 RPS19 RPL18A RPL37 RPS15A RPL3 TMSB4X RPL39 RPL14 LTB RPL30 IL7R RPL13A RPSA RPL6 RPS7 RPS13 RPL9 RPL10A PTMA RPL37A RPS21 RPS9 RPL23A RPS15 RPL36 RPS24 UBA52 RPL29 NACA RPL5 RPL23 RPS29 HLA-B RPL24 RPL27 RPL38 S100A4 RPS20 RPL22 HLA-A HLA-C ACTB CALM1 VIM RPL4 RPL31 S100A6 LDHB NPM1 PDCD4 TOMM7 S100A11 HINT1 SLC25A6 GIMAP7 ITM2B GBP5 UQCRB PNISR PTPRC BTF3 PFDN5 IL32 MYL12A S100A10 GAPDH RPS4Y1 FTH1 EMP3 UXT HLA-E RPL36AL EEF2 PPIA MYL12B NAP1L1 HSP90AA1 IKZF1 EEF1D ATP5F1E CD2 AQP3 CD3G COX7C SERF2 SNHG8\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPLP1 RPL10 RPS12 RPL13 RPS27 RPL30 RPL13A RPS14 RPL18A RPL11 RPS19 RPL28 RPS23 RPS3 RPS6 RPS3A RPL3 RPS20 RPS13 RPS15A TMSB4X RPS15 RPL9 RPL39 RPS9 RPL5 RPL29 RPS29 RPS21 RPL6 RPL23A RPL14 UBA52 RPL37 RPL10A RPS24 RPS7 RPL37A RPL38 RPSA RPL23 SARAF RPL31 EIF1 PABPC1 RPL24 PTMA RPL36 RPL27 RPL4 NAP1L1 ANXA1 COX7C GIMAP7 RPL22 NACA EEF2 PASK RPL36AL TOMM7 S100A6 LDHB ACTB FTH1 HLA-A IKZF1 HLA-E NEAT1 SYNE2 HLA-B PTPRC N4BP2L2 LTB HLA-C DDX5 HSP90AB1 PNISR SEPT7 GIMAP4 AES OST4 RPS4Y1 NPM1 BTF3 YWHAB SCAF11 PNRC1 CORO1A VIM LEPROTL1 CCNI ITM2B CALM1 EIF3K PFDN5 ATP5MG EEF1D ANP32B\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPL13 RPS12 RPLP1 RPL10 RPL30 RPS14 RPL28 RPS3A RPS3 RPS27 RPS15A RPS23 RPS6 RPL3 RPL11 TMSB4X RPL13A RPL9 RPL14 RPS13 RPL6 RPS19 RPL37A RPL18A RPS7 RPL39 RPS29 RPL29 RPS20 RPL37 RPL36 RPL27 LTB RPL23A RPL10A PTMA RPL5 RPS24 RPL23 RPS9 RPL24 RPS21 RPS15 UBA52 RPSA RPL38 NACA PABPC1 PSME1 RPL22 PTPRC EIF1 EEF1D RPL31 MYL12A GIMAP7 ITGA4 PNRC1 HLA-B RPL4 DDX18 HSP90AA1 NPM1 S100A6 BTF3 ATP5F1E HINT1 GNAS COX7C NOP53 EEF2 EIF3E NAP1L1 GMFG HSP90AB1 VIM HMGB1 HNRNPU AKAP13 YBX1 C12ORF57 FTH1 SARAF PSMB9 DDX24 SYNE2 SLC25A6 PPIA HLA-C PFDN5 HNRNPA2B1 KLF3 IKZF1 ATP5MC2 TRIM38 ATP5MG RPL36AL ISG20\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPL10 RPS12 RPL13 LTB RPS14 RPLP1 RPL28 RPS27 RPL30 RPS3 RPL3 TMSB4X RPL13A RPL11 RPS3A RPS23 RPL23A RPL18A RPS19 RPS24 RPS15A RPL14 RPS21 RPL29 RPS9 RPL39 PTMA RPS13 RPS6 VIM RPS15 S100A4 RPL37 HSP90AB1 HLA-B RPL36 RPS20 IL32 RPL9 RPL27 RPS29 RPL24 RPS7 RPL23 S100A6 RPSA RPL5 CALM1 GBP5 RPL38 RPL10A S100A11 HSP90AA1 UBA52 RPL22 RPL37A HLA-C EIF1 GIMAP7 ACTB NACA GAPDH RPL6 IL7R PTPRC ITGB1 EMP3 RPL31 HLA-A ATP5F1E S100A10 ITM2B NEAT1 ENO1 H3F3A ANXA1 SUB1 CFL1 PRDX1 TPM3 NPM1 PPIA BTF3 HNRNPA2B1 CD3D MYL12A COX6B1 VAMP8 GIMAP4 STAT1 NCL USP10 PSMB9 PRRC2C CHCHD2 RAN SYNE2 COX7C\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPL13 RPS12 RPLP1 RPL10 RPS14 RPL30 RPS27 RPS23 RPS3A RPL13A RPL28 RPS15A RPL11 RPS19 RPS3 RPL3 RPS15 RPL29 RPL18A RPS6 TMSB4X RPL39 RPL9 RPS13 RPS9 RPL37 RPL6 RPL14 RPL5 RPL23A RPSA RPS7 RPS20 PTMA UBA52 RPL37A RPS21 RPL27 RPL36 NACA RPL22 RPS29 RPL38 RPL31 RPS24 RPL23 RPL10A SMCHD1 RPL24 LTB HLA-B PABPC1 PTPRC SARAF ITM2B PFDN5 YBX1 RPL4 STAT1 PNRC1 FYB1 IKZF1 IL7R FTH1 IL32 PPP2R5C NEAT1 HLA-C LPIN2 ACTB HNRNPA2B1 GAPDH DEK YWHAB HSP90AA1 HLA-A H3F3A TRAF3IP3 ATP6V1G1 TXNIP MX1 SLFN5 HLA-E BTF3 GIMAP7 EIF1 USP15 DDX17 STK4 DNAJA1 CALM1 GNAS PCBP2 SAMD9 PIK3IP1 CFL1 HSP90AB1 ZFAS1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 TMSB4X FTH1 RPS27 EIF1 RPL10 HNRNPA3 DDIT4 CXCR4 RPL13 SNHG15 DDX5 SRGN H3F3B HSPA5 HSP90AB1 SMCHD1 ARL4C SLC2A3 CHD1 GOLGB1 PTMA RPL23A RPL11 ZEB1 SF3B1 RPL39 RPL28 NFKBIA JOSD1 SRRM2 HNRNPD PNN HMGB1 RSRC2 SRSF3 YPEL5 RPS6KB1 RPS14 RBM39 DHX36 RPS6 CD69 SNRPG STAT3 ZNF331 EIF4A2 RPL30 EIF5 EPC1 UBC GPBP1 CDKN1B PABPC1 RPLP1 PNRC1 SRSF5 RPS24 RPL36 RPL13A RPL29 ARID5B NUP50 PIK3R1 PSMA5 ARID4B RPL9 RPL37 KDM4B PPIA POLR2D BTF3 KIF5B CREBRF SON NR4A2 RNF20 RPS20 RPL31 IWS1 KPNA2 RPS15A SRSF11 RPL7L1 USP7 CCNL1 DNAJA2 RBM25 EIF3A PDIA3 BZW1 COPS2 PRPF38B ATP5MG ATF4 MAPRE1 TCTE3 RPS21 PIAS2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL10 RPLP1 TPT1 RPL13 RPS12 RPS27 RPS14 RPL39 RPL28 RPL30 RPS19 RPS15A RPS3A RPL3 RPS23 RPS3 RPL18A TMSB4X RPS6 RPL11 RPS13 RPL23A RPL14 RPL13A RPL29 RPL9 RPS15 RPS9 RPL5 PABPC1 RPS21 RPL36 RPS29 RPS24 RPS7 PTMA VIM RPL6 RPL10A NACA RPSA UBA52 RPL24 RPL37A RPL38 RPL27 RPL37 RPL22 EEF2 IL32 RPS20 RPL31 GAPDH GIMAP7 CD8B S100A11 HLA-C BTF3 PFDN5 UBC SARAF RPL4 ANXA1 EEF1D S100A6 H3F3B HSP90AA1 IL7R HINT1 RPL23 FTH1 CALM1 PTPRC CYBA NCL CXCR4 LTB RPS4Y1 S100A10 CFL1 RPL36AL EIF1 ARID5B HLA-E UQCRB ACTB IFI16 ITGB1 COX7C PPIA PSME1 HLA-B ISG20 C12ORF57 HLA-A HNRNPA2B1 DDX5 ZFAS1 S100A4\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPLP1 RPL13 RPS14 LTB RPS12 RPL10 RPL28 TMSB4X RPL13A RPS3 RPL30 RPS19 RPS3A RPS27 RPS15A RPS23 RPL29 RPS6 RPL39 PTMA RPS24 RPL37 RPL3 RPL23A RPL11 RPS7 RPL18A RPL14 RPL6 RPS15 RPL5 RPS9 RPS13 RPS20 S100A4 RPL10A UBA52 RPL24 RPL9 ACTB NACA RPS21 IL32 RPL36 HSP90AB1 RPSA RPL23 VIM RPL27 RPS29 FTH1 SERF2 HSP90AA1 HINT1 EIF1 RPL31 RPL38 HLA-B SYNE2 RPL22 RPL37A S100A6 SLC25A6 NAP1L1 RPL36AL GIMAP4 COX7A2 CD2 S100A10 PTGES3 PTPRC GAPDH BTF3 PPIA HLA-C ITGB1 ATP5F1E NDUFB2 YBX1 H3F3A COX7C ATP5MG CFL1 EEF1D HNRNPA2B1 GIMAP7 EEF2 AES HSPD1 FXYD5 HNRNPC NPM1 RPS27L EMP3 PSME1 KMT2E ARPC2 SEPT7\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS12 TPT1 RPL13 TMSB4X RPS19 RPL18A RPL28 RPL6 RPS3A RPS27 RPS3 RPS23 RPS7 RPS14 RPL30 RPL3 RPL11 RPL37 RPL14 RPL13A RPL23A RPL10 RPL9 HLA-B LTB RPS6 RPS15A RPS13 RPL22 RPS21 RPS20 RPL23 RPS29 FTH1 GAPDH ITM2B UBA52 IKZF1 RPL39 RPL5 RPS9 RPL29 PTPRC RPL37A PTMA TRIR FYTTD1 HINT1 RPL38 RPL31 RPL24 RPL36 HLA-A EIF1 DDX24 IL7R CALM1 RPSA RPL27 LDHB NEAT1 EIF4B DDX5 FYB1 EMP3 RPS24 ATP6V1G1 HNRNPA2B1 HLA-C KTN1 TAF1D ENO1 CLEC2D HLA-E TPR SEPT7 PNISR CASP8 CFL1 MYL12A COX6B1 ATP5MF OCIAD2 UQCRB HNRNPA3 HSP90AA1 LDHA ETS1 JAK1 NACA PNRC1 TCF7 BTF3 H3F3A FAM107B MRPS6 PPIA RABAC1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPLP1 RPS12 RPL13 RPL10 TMSB4X RPL28 RPS19 RPS14 RPS27 RPS3A RPS3 RPL3 RPS15A RPS6 RPL30 RPL18A RPS13 RPS23 IL7R RPL13A RPS7 RPL39 RPL9 PTMA S100A4 RPL37 RPL11 RPL29 RPS24 RPS15 HLA-B RPL14 RPL5 RPS9 RPL23A RPS20 RPL6 RPS21 PTPRC IL32 ACTB RPSA GIMAP7 RPL36 RPL23 RPL10A RPL27 RPS29 IFITM2 LTB HMGB1 EMP3 RPL24 HLA-E UBA52 NEAT1 PFDN5 RPL31 EIF1 TAGLN2 GBP5 NACA GIMAP4 LDHB GBP4 HLA-A CD53 SARAF RPL37A ANXA1 RPL22 MYL12A UQCRB ATP5F1E EEF1D ARL4C S100A6 SERF2 S100A10 BIRC3 GAPDH RPL36AL RPL38 PNRC1 PRRC2C ATP5MG HLA-C CFL1 PSME1 RAC2 CD3D RPS4Y1 CALM1 HSP90B1 LPIN2 DDX17 SYNE2 MAGOH\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS14 RPL13 RPS12 TPT1 RPL10 RPS19 RPS27 IL7R RPL13A RPS3 RPL11 RPL30 RPS3A RPS15A RPL28 FTH1 RPS6 RPL3 RPL39 RPL37 TMSB4X RPS23 RPL9 RPL23A RPL29 RPS7 RPL14 RPL37A RPL5 RPL6 RPS15 RPS9 RPS24 RPS20 RPS29 RPL31 RPL18A RPL36 RPS21 RPL27 PTPRC RPS13 RPL10A HLA-B UBA52 RPL23 NACA RPSA RPL38 HLA-A EEF1D BTF3 H3F3A S100A10 PFDN5 GAPDH PABPC1 PTMA GIMAP7 TXNIP PAK2 YWHAB RPL24 CAST EML4 HMGB1 HINT1 S100A4 CD3E RPL36AL HNRNPU HSP90AA1 SMCHD1 TOMM7 PASK EPB41 HLA-C RPL22 DDX17 NEAT1 ARGLU1 EIF4A2 CNOT6L CXCR4 CALM1 UQCRB MSN UBC FXYD5 SCAF11 PAIP2 PRRC2C HSP90AB1 TCF7 NFYB MBNL1 SLC25A3 COX7A2L\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X RPL13 TPT1 RPL28 RPLP1 RPL10 RPS19 RPS12 RPS27 RPS3A RPS14 RPS15A IL32 ACTB RPS3 RPS23 RPL3 RPL30 PTMA LTB RPL29 RPL9 RPL18A RPL13A HLA-B RPS6 RPS24 RPL37 RPL11 RPL39 RPS21 RPS13 RPL23A RPL10A RPS15 RPL14 TNFRSF4 HLA-A RPL6 HSP90AB1 HSP90AA1 RPS20 RPS7 RPL24 RPS29 FTH1 GAPDH RPL5 RPL22 RPSA RPL36 FKBP2 ATP5F1E RPL38 EIF1 S100A4 PFDN5 SERF2 CFL1 UBA52 RPL37A RPL31 RPL23 RPL27 MYL12A HNRNPA2B1 PTPRC GZMA NACA EEF1D HLA-C PPIB ANXA1 ARPC2 HNRNPU CYBA CALM1 RPS9 COMMD6 RPL36AL NOP53 RPS27L CD3D RPL4 SEC61G COX6C LRRFIP1 YWHAB SERP1 EMP3 IKZF1 NPM1 CAST S100A6 BTF3 SYNE2 CORO1A COX7A2 NAP1L1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 GADD45B TMSB4X EIF1 UBC DDIT4 NFKBIA RPS15 PTMA RPL30 RPS27 RPS7 H3F3B EIF5 RPS13 SRGN RPL3 RPL24 HNRNPA2B1 PIM3 RPL6 RPL39 RPL14 JUND RPL37A RPL36 RPL10 RPL37 RPL9 PNRC1 RPL23A FTH1 RPS9 CD69 RPS6 HLA-B HINT1 RPL13 UBB SET PABPC1 RPS15A RPS14 SON RPL18A PSMA7 RPL11 RPS12 EIF3E RPL13A GNAS EIF4A2 BTF3 CFL1 CREM UBE2D3 ITM2A ACTB TAF1D TPT1 HNRNPH1 RPL23 SAP18 RBM8A HLA-A CDC42SE2 RPL22 RPL29 TOP1 REL PPIG UBA52 RPL5 YBX1 DDX24 HNRNPA0 RPL28 RPS23 BZW1 SQSTM1 RPS19 FAM177A1 NDUFS5 CLEC2B CCNL1 MED10 NACA SUCLG1 VAPA STK17B PSMB3 SERF2 RPL36AL HSP90AB1 CYCS RSF1 RBMX DDX5 YY1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL10 RPL13 TPT1 RPLP1 RPS12 RPS14 RPS27 RPL30 RPL28 RPL13A RPS3A RPS6 RPS15A RPS3 RPL11 RPS23 RPL9 RPL18A RPL29 RPL39 RPL14 RPL3 RPS19 RPS21 RPS15 RPS13 RPL37 LTB RPS20 TMSB4X RPL37A RPL23A RPL36 RPL23 PTMA RPL5 RPL24 RPS7 RPL6 RPL10A VIM RPS24 UBA52 RPL22 RPL27 RPS9 RPS29 PABPC1 RPSA RPL31 RPL38 ACTB NACA RPL4 HLA-B IL32 EEF1D GIMAP4 NPM1 FXYD5 NAP1L1 RPL36AL TOMM7 HINT1 HLA-C PRRC2C GAPDH PTPRC CALM1 HLA-A BTF3 S100A6 GIMAP7 HNRNPA2B1 CFL1 HSP90AA1 SERF2 CAST NEAT1 ATP5F1E GNAS FTH1 ARL6IP5 LDHB UQCRB RPS4Y1 HSP90AB1 COX7C S100A11 EIF1 DDX46 EIF3E COMMD6 IKZF1 PFDN5 SET CD48 EEF2 CD3D\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL10 RPL13 TPT1 FTH1 RPS12 RPL28 RPL13A RPS3 RPS6 RPS19 RPS14 RPL29 TMSB4X RPS3A RPL23A RPL11 RPS27 RPL18A RPL37 RPL3 RPS21 RPS13 RPL30 RPL10A RPS23 RPS15 RPL37A RPL31 RPL39 RPL36 RPS15A RPL9 RPL14 RPS24 RPS9 RPS29 RPL5 RPL6 RPL24 RPS20 RPS7 RPSA RPL23 ATP5F1E RPL27 HLA-A NACA UBA52 IL32 PABPC1 PTMA PTPRC RPL22 RPL38 HLA-B NR3C1 COX7C EIF1 S100A11 SRGN HLA-C NAP1L1 CD3G HNRNPF EEF2 CALM1 PFDN5 PIK3R1 NPM1 ITM2B RPL4 GIMAP7 MRPS5 TOMM7 SARAF HINT1 CYSLTR1 RPS4Y1 ACTB TAF10 EEF1D S100A6 SERP1 FAM107B STK17A RAN BTF3 VIM NOP53 MBP RGCC LTB ARPC2 CDKN1B CBX5 UBE2B EIF3A DDX24\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TMSB4X TPT1 RPL13 LTB PTMA RPL10 S100A4 VIM RPS14 RPS19 IL32 RPL28 RPS12 HLA-B RPS3 RPS23 RPL30 RPL11 RPL18A S100A10 RPL13A RPS15 S100A6 IL7R RPS24 RPL37 RPL3 RPS27 CALM1 RPL29 RPL14 RPS6 RPS3A RPL9 RPL10A RPS7 HLA-A RPSA RPL23A RPS13 YBX1 RPL27 RPL39 RPS20 RPS15A RPS29 ENO1 RPL23 RPL37A IFITM2 RPS21 TPM3 RPL5 RPL6 RPL24 CFL1 PTPRC HSP90AB1 UBA52 HINT1 RPS9 ITGB1 RPL38 S100A11 CALR HLA-C RPL22 LDHA RPL4 RPL31 GAPDH NACA ACTB HMGB1 RPL36 ARPC2 TAGLN2 ATP5F1E NCL NEAT1 SERF2 FLNA LRRFIP1 LCP1 H3F3A MSN RABAC1 BIRC3 CD3D HSPA5 PTGES3 AHNAK NPM1 FTH1 DNAJC8 RPS4Y1 LDHB ELOB\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 TPT1 RPS12 TMSB4X RPL10 RPL28 RPL13A RPS14 RPS27 RPS3A RPL30 RPS6 RPS19 ACTB PTMA RPL39 RPS3 RPL3 RPL18A RPL11 RPS23 RPL37A RPL5 RPL6 RPL37 RPS24 LTB RPS20 RPS15A RPL23A IL32 RPS15 RPL29 RPL4 HLA-B RPL14 RPL36 HSP90AB1 NACA RPL9 RPL23 S100A6 RPS21 RPS29 RPSA UBA52 RPS13 S100A4 RPS7 RPL31 HINT1 RPL38 RPS9 RPL10A RPL22 STAT1 RPL27 RPL24 NCL HLA-C GIMAP7 HLA-A MSN HNRNPA2B1 CORO1A RPL36AL PTPRC NAP1L1 EEF2 HSP90AA1 H3F3A CFL1 GAPDH ITGB1 PRRC2C HNRNPU SUB1 CD2 TOMM7 NPM1 HNRNPR PPIA TMEM50A VIM HMGB1 EEF1D YBX1 CDC42 CHCHD2 LCP1 GBP4 PPIB C1QBP CCDC168 OST4 ARPC2 TNFSF10 LDHA\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TPT1 RPS12 RPLP1 RPL10 RPL13 TMSB4X RPL28 RPS3A MALAT1 RPL18A RPS19 RPS14 RPL11 RPS27 RPS3 RPL30 RPS15A RPS6 RPL14 RPL3 RPL29 RPL39 RPS23 RPL37 RPS13 RPL13A RPS9 RPL6 RPL37A RPS15 RPS7 RPL36 RPL10A RPL9 S100A6 RPL23A RPS21 RPL5 S100A4 RPS29 RPS20 NACA RPSA RPL24 RPL27 HLA-B IL7R ACTB RPS24 UBA52 VIM LTB RPL38 BTF3 RPL31 PFDN5 RPL23 EEF2 HINT1 PPIA RPL22 ITM2B S100A10 HLA-A ATP5F1E GAPDH UQCRB ARPC2 RPL4 PTPRC RPL36AL CALM1 SARAF EMP3 LDHB GTF3A HSP90AA1 EIF3F NAP1L1 PTMA RSL1D1 COMMD6 PABPC1 SERF2 PSMA7 C12ORF57 HLA-C CORO1A NOP53 SUMO2 EEF1D RIPOR2 RBM25 HMGB1 FTH1 ARL4C SERBP1 CD3G EIF3E H3F3B\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPS15A RPS12 RPS27 RPS3 TPT1 TMSB4X RPS19 RPLP1 RPS3A RPS14 RPL30 RPL14 RPL10 RPL28 RPS23 RPL23A IL7R HLA-A PTMA RPL13A RPL3 RPS15 RPL37 RPS7 RPL11 RPL18A RPS6 RPL24 GNLY UBA52 RPL29 RPS13 RPS29 PTPRC HLA-B RPL6 IL32 NKG7 RPS24 RPL38 RPS21 RPL27 RPL39 RPL37A RPL36AL PYHIN1 GIMAP7 NACA CALM1 CD8B RPL36 RPL9 CST7 GIMAP4 TNRC6B RPL10A KIAA1551 KLRD1 RPS20 ITM2B PFDN5 PPP2R5C S1PR4 NEAT1 PARP8 EMB CD2 RPL5 FGFBP2 HLA-C SUMO2 RARRES3 HMGN1 RPS9 MYL12B CARD16 CXCR4 SLFN5 CYBA FTH1 KMT2C STK4 EEF1D APMAP CEP104 CELF2 DDX5 RAP1B FYN UBC GPR137B DENR ZBTB7A PSMA4 COMMD6 CD3D FNBP1 CD3G\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPS12 RPL13 RPS14 RPL10 RPLP1 RPL3 RPS3 TPT1 RPS27 TMSB4X RPL30 IL7R PTPRC RPL13A RPL28 RPS3A RPS19 RPS6 PTMA RPS15 RPL11 RPL18A RPL14 HLA-B HLA-A RPS15A RPL37 RPS21 RPL6 RPS29 RPL23A RPL24 RPS24 RPS23 GIMAP7 RPS13 RPS7 GAPDH RPL39 RPSA RPL5 HMGB1 SEPT7 PFDN5 ITM2B EEF1D ACTB RPL27 RPL9 UBA52 RPL36 RPL37A CMC1 RPL23 BTF3 RPL10A HLA-C PSMA7 RPL31 RPL4 HINT1 PYHIN1 ZRANB2 RPS9 TRIR H3F3B KIAA1551 CALM1 CD3E SRSF10 IKZF1 PNRC1 DDX5 IFI16 IL32 TOMM7 SCAF11 ATP5F1E DDX17 FTH1 RHOA RPS20 TRGC2 TPM3 COX8A COX7C ATP5MC3 ARPC2 YBX1 USP34 SEPT6 NEAT1 COPB1 PIK3R1 TIGIT NPM1 RTF1 RSRP1 UBE2D3\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL10 TPT1 RPL13 RPS12 RPLP1 RPL28 TMSB4X RPS14 RPS24 RPL30 RPL3 IL7R RPS27 RPS3 RPL18A RPS23 PTMA RPS3A RPS15A RPS19 RPL13A RPL39 RPL11 RPL37 S100A4 RPS9 RPL29 VIM RPS15 RPS6 RPL14 LTB RPL10A IL32 RPL23A RPS7 RPSA UBA52 HLA-B RPL37A RPS21 RPS13 RPL24 RPL6 RPL9 RPS20 RPL5 S100A6 RPS29 RPL36 GAPDH RPL27 NACA RPL23 HINT1 RPL22 LYAR EIF1 BTF3 EEF2 PPIA LDHB GIMAP7 RPL31 ATP5F1E HLA-C ITM2B RPL38 MT2A SERF2 CD48 AES ARHGDIB EIF3K S100A10 FXYD5 TXNIP HSP90AB1 H3F3A PABPC1 NPM1 ATP6V1G1 EEF1D ARPC2 POLR2L COTL1 HLA-A ROCK1 PSME1 ANXA1 CD8B ARID4B COX7C CALM1 DNAJC8 EIF3E MYL12B TOMM7 NDUFA12\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X RPL13 RPLP1 TPT1 RPS12 RPL10 RPS15A RPS14 RPS27 HLA-B RPL28 RPL30 RPS3 RPL13A RPS19 GZMA PTMA PTPRC RPL11 RPL14 RPS3A RPL6 RPL39 RPL10A RPL37A RPL3 UBA52 RPL36 ARPC2 RPS13 RPL29 CALM1 HLA-A RPL18A SEPT7 S100A6 PFDN5 KIAA1551 RPS15 RPL37 RPL5 CFL1 IL7R PNRC1 RPS7 RPS20 CST7 BIRC3 SYNE2 RPL9 PARP1 DDX17 ATP5F1E NEAT1 TANK TAX1BP1 NCL RPS21 SSB ACTB RPS6 CD3E CYBA STK4 NSRP1 RAP1B NCOR1 OST4 MYL12A SRPRA ZBTB7A ATP6V1G1 PLEKHA3 GAPDH RPS4Y1 PSME1 CXCR4 DOCK8 ARL6IP5 R3HDM2 H3F3A PARP14 FYN N4BP2L2 RPSA PBXIP1 WAC RPS9 RPL23A SLC38A1 PIK3R1 PARP8 RPL27 ANXA1 HLA-C AKAP13 KLRD1 CD3D VIM\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X RPS27 RPLP1 HLA-B RPS12 RPL13 RPL28 RPS14 RPL10 HLA-A ACTB RPL30 RPL13A RPS6 RPS19 RPS15A TPT1 RPS3A RPL37 RPS13 RPS3 IL32 FTH1 RPL23A RPL3 RPS7 RPL14 ITM2B RPS24 RPS23 RPL36AL CST7 RPL36 NEAT1 DDX5 RPS15 RPS21 CD2 STK17A GIMAP4 RPL23 RPL39 RPL5 RPL18A FYB1 RPL11 HLA-E SYNE2 HLA-C RPL6 HNRNPA2B1 UBA52 RPS20 S100A6 CMC1 NACA SLFN5 RPL38 SERF2 EMP3 RPL9 CYBA MYL12A GSTK1 CLEC2D OPTN RPS9 RSRP1 HNRNPC RPL4 COX7C GBP2 SAMD9 HSP90AB1 VIM DRAP1 PTMA RPL37A SMCHD1 IKZF1 RILPL2 S100A11 RPL29 ATRX GIMAP7 HNRNPK PRDM2 S100A4 DOCK8 RARRES3 RPS4Y1 RPSA ARL6IP5 MX1 PARP14 IRF2 TPRG1 NFKBIA TPM3\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL10 RPLP1 TPT1 RPS19 RPS27 TMSB4X RPL13 RPS3 RPL28 HLA-B RPS14 RPS12 RPS23 RPS3A RPL11 RPS6 RPL3 RPS15A HMGB1 RPS13 CFL1 RPL6 RPL30 RPS7 RPS24 RPL23A PTPRC RPL14 CST7 RPL37 ARL4C GAPDH PTMA RPL13A RPS9 HLA-A RPL39 RPS15 RPS29 RPL9 RPL18A RPL37A HNRNPA3 CYBA MACF1 PFDN5 RPL27 BOD1L1 SET SEPT7 NACA RPL24 RPS20 DDX5 UBA52 IL32 HNRNPA2B1 RPL10A H3F3A HLA-C ACTB RNF213 RPL38 GNB5 SERF2 MSN CXCR4 SUB1 SNU13 PNRC1 KANSL1 S100A6 AC245297.3 HSP90B1 KLRD1 KTN1 UQCRB EIF1 MBP USF2 PNN PIK3R1 ARPC2 VIM EML4 SPTAN1 CD2 YY1 HNRNPU RAD21 NCL RPSA DNAJA1 UBC NDUFA4 BTF3 MRPS25 ATP5F1E PYHIN1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 IL7R TPT1 RPLP1 RPS12 RPS3 PTMA RPS23 GNLY RPL10 RPL13 RPL30 TMSB4X RPL13A RPS14 RPL3 RPL28 RPL37 HLA-B RPS19 RPS27 RPL11 RPS15A RPL18A RPS3A RPL29 RPS15 HLA-A RPS9 RPL5 RPL27 RPS13 RPL23A RPL39 RPS24 RPL14 UBA52 RPL6 SPOCK2 RPS6 RPL31 FTH1 NEAT1 NKG7 RPL36AL HLA-E RPL9 RPS7 UBC RPL22 RPL37A HLA-C RPL10A ARL6IP5 RPL24 BTF3 MYL12B CLDND1 EEF1D NACA HMGB1 PFDN5 SEPT7 H3F3A HLA-F GMFG NCL RPL38 LTB SAMSN1 LAPTM5 CXCR4 HINT1 PTPRC CNOT6L SARAF RPS20 CD3D HSP90AB1 ACTR2 ARGLU1 LYAR GNAS ESF1 RPS29 S100A11 EIF1 EML4 PPP2R5C PDCD4 IKZF1 TNFAIP8 PPIG ITM2B RPL23 SRRM2 DDX5 CD247 GAPDH MTDH\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPL13 RPLP1 RPS12 RPL10 RPL28 RPS14 RPL13A RPS3A TMSB4X RPS23 RPS27 RPL11 RPS15 RPL14 RPL18A RPS6 RPL3 RPL30 RPS3 RPL23A RPL39 RPS15A IL7R RPS19 RPL37 RPL6 RPS13 RPL9 RPS7 RPL5 RPS21 UBA52 RPS24 VIM RPS29 HLA-B S100A6 NEAT1 RPSA RPL24 RPS9 RPL37A S100A4 ACTB RPS20 RPL23 RPL29 RPL10A FTH1 RPL27 RPL22 RPL36 NAP1L1 PTPRC RPL31 LTB GIMAP7 HLA-A S100A10 NACA CD3D RPL38 ANXA1 PTMA EIF1 LDHB CYBA CXCR4 CALM1 PABPC1 HLA-C PSMA7 EEF1D GBP1 STAT1 EEF2 IL32 KLF6 CAST ITGB1 AES ITM2B NOP53 KTN1 BTF3 HMGB1 SERF2 BIRC3 JUND PFDN5 KLRD1 HINT1 EZR YWHAZ MYL12A RPL36AL SARAF ATP5F1E\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X RPLP1 TPT1 RPS27 RPS3 RPL28 RPS14 RPS15A RPS19 RPL10 RPS12 RPL30 RPL13 RPS3A RPS23 RPL3 RPL18A RPL39 PTMA HLA-B PTPRC RPL14 RPL6 HLA-A RPL29 CST7 RPS29 RPS21 RPS24 NKG7 RPS15 RPL11 IL7R UBC RPL13A GAPDH RPL23A VIM CYBA RPL23 RPL36 HMGB1 IL32 S100A6 FTH1 RPS9 UBA52 YBX1 RPL37A CXCR4 SERF2 RPL9 HLA-C RPS6 CALM1 RPS13 EEF1D SMCHD1 CMC1 SREK1IP1 NEAT1 SKIL EIF1 PABPC1 EZR PNRC1 PNISR AES GIMAP7 JUND ITM2B ICE1 RAC1 NACA HSP90AA1 RPL5 TPM3 ATP5MG RPS7 MYL12B RIF1 LCP1 RPL24 ATP6V1G1 CDC42SE2 HNRNPA2B1 RPL22 RPS20 CFL1 ACTR2 BPTF MTRF1L MSN MORF4L1 GZMA EMP3 TOMM7 ATP2B4 YWHAB\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPS12 RPL13 RPS14 TMSB4X RPS19 RPL10 RPS3 RPS3A RPS27 RPL30 RPL3 RPL39 RPL28 RPS23 IL7R RPL18A RPL11 RPS6 RPL37 RPS13 ACTB RPS15A RPS7 RPL13A RPS21 RPL29 HLA-B RPL37A RPL6 RPL9 FTH1 NACA RPS29 LTB RPL24 RPL14 RPS9 UBA52 RPS15 PTMA RPS24 HLA-A RPL23A RPL10A S100A4 PNRC1 CD2 S100A6 RPS20 PTPRC CALM1 S100A11 ITM2B PFDN5 RPL36 RPL36AL RPL5 BTF3 RPL23 S100A10 SERF2 DDX17 VIM RPL31 RPSA H3F3A COX7C FYN YWHAB CD3D SEPT7 RPL38 RPL27 EIF1 HNRNPA2B1 HLA-E EIF3K RPL22 SEPT6 RABAC1 NAP1L1 H3F3B TOMM20 CAMK4 RPS4Y1 GRAP2 CYBA NFKBIA GIMAP4 NOP53 ARL4C PABPC1 MYL12A TOMM7 EMP3 ARHGDIB IL32\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X TPT1 RPL10 RPLP1 RPS12 RPL28 RPL13 RPS27 RPS19 RPL30 RPS23 RPL11 RPS15A RPS3A RPS3 RPS14 RPL39 IL7R RPS21 VIM RPL3 RPS15 RPL14 RPL13A RPS20 RPS7 S100A4 PTMA S100A6 RPS24 RPL23A RPS13 RPL5 RPS6 HLA-B RPS9 RPL36 RPL9 RPL18A RPL23 RPL29 RPL6 RPS29 RPL22 IL32 RPSA YBX1 RPL37 S100A10 RPL37A ATP5F1E UBA52 PTPRC CAST HNRNPA2B1 HLA-C LDHB NEAT1 CALM1 IKZF1 RPL10A LGALS3 RPL31 NPM1 HINT1 PFDN5 RPL38 HLA-A LTB SON HSP90AA1 NACA ITGA4 YWHAB GAPDH FAM107B BCL2 RPL36AL SYNE2 EIF5B ARPC2 RPL27 EIF1 SUMO3 ITM2B LRRFIP1 ARL4C RWDD1 NDUFA4 UBC MYL12B TAGLN2 FTH1 RPL4 AHNAK TXN HSP90AB1 TXNIP ANXA1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL10 RPLP1 TMSB4X TPT1 RPS12 RPL13 RPS14 RPS3 RPS23 RPL28 RPS27 RPL30 RPL13A RPS15A RPL18A RPS6 RPS19 RPL3 RPS3A RPL14 RPL11 RPSA UBA52 RPS21 RPL39 RPL23A PTMA RPL29 VIM RPS24 RPL6 RPS7 RPS13 RPL22 RPS15 RPL37 HLA-A RPL37A IL32 MRPS6 RPL5 PTPRC NACA RPS29 GAPDH ACTB RPL36 EEF1D IL7R RPS20 RPL27 PFDN5 DDX5 HLA-B RPL9 RPL24 RPL31 HLA-C COX7C GNAS RPS9 RPL23 RPL38 RPL10A NAP1L1 RGCC ARL4C LTB PSMB9 DNAJC8 PPIA H3F3A TPR TOMM7 GIMAP7 ATP5MPL CALM1 S100A11 KLRD1 SYNRG FTH1 SLC38A1 PPP2R5C EIF1 ITM2B TRIR IKZF1 S100A4 LDHA NPM1 CYBA SRRM2 SLC38A2 ZFX SPOCK2 AC008105.3 NOP53 HNRNPA3 HSP90B1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X RPLP1 RPL10 RPL13 RPS12 RPS14 RPL28 RPS27 TPT1 RPL13A RPS19 RPS15A RPS3 RPL14 RPS23 RPL30 PTMA HLA-B RPS7 VIM RPL39 RPS3A RPL6 RPL37 RPL18A RPS24 RPL11 RPS29 PTPRC RPL36 RPL23A HLA-A RPS13 GNLY RPL29 RPL3 RPS15 ACTB RPS9 RPL37A RPL38 CFL1 IL32 RPS6 HLA-C CALM1 RPL5 RPL27 RPL10A RPS21 RPL23 RPS20 LCP1 EEF1D CCL4 RPL9 CYBA RPSA HSP90AA1 SYNE2 NKG7 CST7 GAPDH EIF1 UBA52 S100A6 RPL24 RBM39 RPL31 GIMAP7 SERF2 EMP3 RPL36AL NACA SEPT7 CDC42 BTF3 HNRNPA2B1 HMGB1 H3F3A MYL12A ANXA1 MYH9 HSP90AB1 RPL22 PABPC1 NDUFA4 RPS4Y1 JAK1 DDX5 YWHAZ STK17A ARL6IP5 PRRC2C DDX17 PPP1R14B GNAS COX8A WNK1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 TPT1 TMSB4X RPS12 RPS19 RPS14 RPL30 RPS3A RPS23 RPL18A RPS3 RPL13A RPL3 S100A4 RPS27 RPL23A PTMA RPL10 RPS13 RPS9 RPL37 RPL11 RPL28 IL7R NACA RPS15A RPL6 RPL14 RPS7 ACTB RPS6 RPS24 S100A6 RPS21 RPL5 HLA-B IL32 RPL9 RPS15 RPL38 RPL10A RPS20 MRPS6 FTH1 RPL37A RPL4 DDX5 RPS29 RPL27 CCNI HLA-C S100A10 CALM1 PFDN5 RBM39 RPL39 RPL29 HSP90AA1 HSP90AB1 CYBA BTF3 TMBIM6 ARID4B RPL36 CCDC91 SON UQCRB NEAT1 SCAF11 UBA52 NUCB2 RPSA EEF1D ACAP1 ETS1 RPL23 EIF1 S100A11 C9ORF78 CXCR4 SUMO2 H3F3B BRD7 HNRNPD CD3G GPR65 JAK1 ITM2B KMT2B AES CLEC2D SP110 HLA-A COX7A2 MYL12A RPS4Y1 SLC25A6 NFKBIA\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X RPL10 GAPDH RPS19 PTMA RPS27 RPLP1 HLA-B KIAA1551 ACTB RPL28 HLA-A TPT1 RPL13 RPS15 RPL14 SEPT7 PTPRC HSP90AA1 NACA RPL37 RPS6 RPL13A CD3D RPS3A RPL3 CYBA RPS12 ARPC2 H3F3A NKG7 RPL30 RPL36 RPL39 RPS3 RABAC1 HLA-C PCM1 RPS7 CST7 FTH1 RPS9 RPL5 DDX5 PSMA7 CXCR4 MBNL1 RPS20 ARL6IP5 HMGB1 RPS29 ATP5F1E HLA-E RPL23A RPS15A RPL27 LDHA PPP1R14B NEAT1 BTF3 CD3E TCEA1 MTCH1 RPS13 SQSTM1 SRRM1 ACTR3 REL AES PRRC2C COPA TPM3 C1ORF21 NCL KTN1 ARGLU1 GLS ANKRD11 RPL9 RPL36AL CFL1 RPL11 HLA-DPA1 RPL18A SP100 RPS14 SLFN12L FUS SRGN CAPZA1 UBA52 RPS23 EIF1 TOMM20 CALM1 SEC31A ATP5MG UBC ATP6V1G1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS14 TMSB4X TPT1 RPL10 RPS19 RPL30 RPS3 HLA-B RPS12 RPS27 RPL13A RPL13 HLA-A RPL18A RPS23 HLA-C RPL28 RPL11 RPS15A RPS3A RPS24 NKG7 RPL37 RPL24 RPL29 RPS21 RPS15 PTPRC RPL6 RPL9 RPL3 RPL14 RPS7 RPL23A UBA52 NACA CCL4 S100A4 ACTB RPS20 RPS6 TOMM7 ARPC2 IL32 CALM1 FTH1 RPS13 RPL39 CST7 ITM2B CLEC2B RPL37A CD8B RPL36 HMGB1 RPS9 EEF1D RPL22 RPL27 PNRC1 EIF1 EIF3K COX6A1 CD2 CFL1 SET SMC3 ARL4C MYL12A PTMA KLF6 RPL38 EMP3 NEAT1 RPL5 EEF2 HLA-E RPSA PFDN5 AES YWHAB RPS29 MGST3 VIM RHOF OST4 TERF2IP RPL23 IQGAP1 H3F3B RPL36A SNX6 TMEM14B RHOA RORA CD3G UBC CLEC2D\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY TPT1 RPL13 RPLP1 RPS14 RPL28 RPL10 TMSB4X RPS12 RPS3 RPL30 RPS27 RPS15 RPL14 RPS23 RPS19 RPS21 RPS3A RPL37 RPL11 RPS24 RPL18A ACTB RPS15A RPL23A RPS6 RPS20 PTPRC RPL39 HLA-C HLA-A IL7R PTMA RPL36AL RPL10A RPL27 RPL24 EMP3 RPS9 ARL4C RPL13A NACA UBA52 CD3D RPL3 CORO1A PNISR RPL38 HLA-B HLA-E IFITM2 S100A10 SERBP1 IL32 PFDN5 SON RPL9 S100A4 RPL29 EML4 GNAI2 CALM1 RPL6 CYBA AHNAK RPL5 TXNIP DDX17 RPSA RPL31 SF1 EIF1 DDX5 KRAS LSP1 EVL RPL36 GIMAP4 RPS7 HSP90AA1 ANXA1 S100A6 GAPDH ITGB1 RPS13 ZNF683 BIN2 ADSS SEPT7 KLRC2 HMGB1 PNN SERF2 CFL1 HNRNPR LINC02446 RUNX3 NCL ENO1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TMSB4X RPS19 RPS14 RPS3 TPT1 RPL10 RPL13A RPS27 RPL23A RPS12 RPL13 RPL28 RPS15A RPS21 RPL30 RPS23 PTPRC RPS15 RPL14 RPL37 HLA-B RPS6 PTMA RPL6 RPL27 RPS24 RPS7 HLA-A RPL3 RPL18A RPL11 RPL39 DDX5 PPP2R5C CYBA YWHAZ FTH1 RPS9 H3F3A UBA52 RPL36AL CST7 HLA-C RPS29 NACA HLA-E NEAT1 CXCR4 RPL29 LYST DEK ARID4B ARGLU1 ITGA4 PIP4K2A C1ORF21 ARHGDIB EIF4A2 UBC ATRX RPL10A RPL37A SRGN PDCD4 TOMM7 RPL9 S100A6 CD44 PIK3R1 HMGB1 APOBEC3G RPS20 ARPC2 LBH CD247 SYNE1 GPBP1 NKG7 CDC42SE2 UBXN1 RPS13 RBM26 CD37 PNN KIF2A ITM2B ATG12 SP100 NRDC HNRNPA3 RPL24 KTN1 CD8A EEF2 GIMAP4 THRAP3 TERF2IP BRWD1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 RPL10 TPT1 RPS3 IL7R RPL28 RPS12 RPS19 RPL30 RPL14 RPL3 FTH1 TMSB4X RPS27 RPL11 RPS14 RPS15 HLA-C RPS7 PTMA RPL9 HLA-A RPL13A RPL39 RPS3A RPS23 HLA-B RPL18A RPS6 RPL37 RPL6 RPS24 RPL23A RPS15A RPL29 RPS13 RPL24 LTB RPL37A ACTB UBA52 RPS21 SEPT7 CHD3 RPL23 RPS29 RPS27L HLA-E RPS9 EEF1D RPL22 RPL36 RPL31 SF3B2 NACA CYBA AC025164.1 S100A6 RPL5 HLA-F NKTR RPL36AL PTP4A2 RPS4Y1 PTPRC HNRNPU GCC2 GIMAP7 RORA HNRNPA2B1 ATF7IP2 ARPC2 GBP5 EIF4B NEAT1 ATP5IF1 SRRM2 CALM1 CXCR4 SERF2 PRPF40A UBB ODF2L CST7 TOX4 KTN1 RBM25 CORO1A RSL24D1 HINT1 RPL27 RBM39 LBH LCP1 CD81 WAS BPTF ITM2B\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TMSB4X RPL13 RPS12 RPS27 RPS19 PTMA RPL10 TPT1 RPL13A HLA-B RPS14 HLA-A RPS3A RPS3 RPS23 RPL11 RPL37 RPL3 RPL28 SEPT7 RPL6 RPS15 RPL39 RPS24 RPL23A RPS7 IL7R RPS9 RPS6 CXCR4 PTPRC RPL14 RPS15A RPL24 RPL36 CST7 UBA52 ATP5F1E FTH1 HLA-C RPL27 RPS13 RPL9 CD3E RPS29 KLRC2 RPL5 SERF2 CYBA NKG7 RPL37A ACTB SYNE2 ANXA1 GIMAP7 RPL29 DDX5 CALM1 HSP90AA1 YWHAZ RPL30 RPL18A ITM2B PPP2R5C NACA RPL38 DOCK8 SMAP1 HNRNPU NCL IL32 RBM39 RARRES3 GTF2I RPS20 ZBTB38 LAPTM5 PSIP1 TOMM7 C1ORF21 RASGRP1 EIF3G SSR2 HLA-E CLDND1 PRMT2 PIK3R1 RPSA MIGA1 TMEM160 PFDN5 DDX17 PAK2 UFC1 LBH RNF213 RPS21 H3F3B\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPS12 RPL13 RPL28 RPL10 TMSB4X RPS14 RPL13A RPS27 RPL30 RPL3 RPS3 RPS19 RPS23 RPL39 RPS6 RPL37 RPL11 RPS3A RPS15A RPL5 IL7R RPS15 RPS7 S100A4 RPL14 VIM RPS13 RPL23A RPL18A RPS21 RPL9 LTB NEAT1 RPS9 RPL37A RPL6 HLA-B PTPRC NACA UBA52 RPS20 RPL29 RPSA RPL10A ACTB SYNE2 RPL24 RPS24 RPL38 PTMA UQCRB RPL23 HSP90AB1 ITM2B RPL27 RPL31 EEF1D HLA-A HINT1 NCL RPL36 AHNAK RPS29 ANXA1 DDX5 HLA-C CAST EEF2 S100A10 EZR HNRNPA2B1 NPM1 HSP90AA1 IL32 KIAA1551 CFL1 NAP1L1 FYB1 FAM107B KLF6 RPL22 PDCD4 HMGB1 BIRC3 EIF1 ENO1 TPM3 LDHB MRPS6 GAPDH C12ORF57 EMP3 TOMM7 HNRNPK NIPBL SARAF NOP53\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X RPLP1 RPS19 RPL13 RPL28 RPS14 HLA-B RPS12 RPS27 RPS3A RPL23A RPL37 PTMA RPL10 RPL18A TPT1 RPL30 RPS3 RPL3 RPS13 HLA-A RPS23 CLDND1 RPL37A RPL11 NEAT1 RPS15A GAPDH CD3G VIM PPP1R14B DDX5 SEPT7 RPL13A RPL6 RPL39 PTPRC RPL14 RPL24 SERF2 LDHA UBA52 FAM107B RPL29 HINT1 CD2 RPS21 RPS29 CALR UBXN4 FTH1 C9ORF78 ITM2B CFL1 RPS7 RPS15 RPL9 CYBA HLA-C CPNE3 RPS9 RBPJ SLFN5 GNAS RPL27 ATP5MF RPL5 CXCR3 KIAA1551 RPL4 FKBP2 CXCR4 BTF3 RPS6 DDX24 RPL23 RPL10A RABAC1 EMP3 LAPTM5 H3F3A NDUFA2 CLEC2D C1ORF21 PLP2 PRKDC CMC1 NOL7 RPS24 BTN3A2 HMGB1 TAGLN2 RPS20 CCNI MRPS6 RPL36AL NAA35 RAP1B OST4\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPLP1 IL7R TPT1 TMSB4X RPS12 RPS14 RPL28 RPL10 RPS15A RPS3A RPS27 HLA-B RPS19 RPL30 RPS15 RPL11 RPL13A RPL39 RPL14 RPL18A S100A6 VIM RPS13 RPL24 RPS23 PTPRC RPL3 RPS3 RPL37A RPS24 RPL31 RPL29 RPS29 RPS6 RPL37 FTH1 NACA H3F3A RPL9 PTMA RPS20 S100A11 UBA52 RPS9 GAPDH HLA-C HLA-A NEAT1 IL32 PNRC1 PDCD4 RPL38 ITM2B RPS7 IQGAP2 RPL6 RPL36 KIAA1551 PPP2R5C UBC ANXA1 LTB CDC42SE2 LDHA XRCC5 AC008105.3 SP100 SARAF RPL23A FYN RPL23 EIF3E RPSA UBXN1 MACF1 MPHOSPH8 INPP4A HNRNPA2B1 DNAJC1 SERF2 POU2F2 CORO1A CXCR4 RPL27 CYBA LBH S100A4 APOBEC3G ZFP36L1 ARPC2 RHOA LUZP1 BUB3 RPL5 HNRNPA3 HMGB1 UQCRB RPS21\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X RPL13 RPLP1 RPS19 RPS27 RPL10 RPS12 PTPRC RPL28 RPS14 RPS3 HLA-B TPT1 HLA-A RPL3 RPS9 RPL11 RPS3A RPL30 RPL23A RPS23 RPS15A RPS24 S100A4 NKG7 KIAA1551 RPS21 RPS7 RPL13A RPL18A RABAC1 RPS6 RPS20 APOBEC3G RPL14 CD3G RPS15 SEPT7 RORA S100A6 ARPC2 RPL29 RPL9 RPS13 PFDN5 RPL31 RPL6 RPL23 IL32 LBH HLA-C RPL39 NEAT1 GMFG LDHA RPS29 UBA52 GIMAP7 TROVE2 RPL27 TRG-AS1 KLRD1 HSP90AA1 PTMA ARGLU1 ATP5F1E ANXA1 SYNE2 GAPDH KTN1 FGFBP2 WBP11 RPL10A PNISR RPL24 ARL6IP5 PSMA7 S100A11 SERF2 RPL37 CST7 BPTF RPL38 RPL37A UBC EMP3 TGFBR2 KLF6 ATRX STAT3 TAX1BP1 MAP2K2 FAM50A VIM BIN2 SET MSN PPIB YWHAB\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X RPLP1 RPL10 RPS19 RPS12 RPL13 TPT1 HLA-B RPS27 RPS3 RPL28 RPL39 RPS7 IL32 HLA-A RPL18A RPL11 RPS3A RPL13A RPS15A RPL30 PTMA PTPRC RPL14 CALM1 RPL37 RPS29 RPL37A RPS24 SYNE2 RPS14 RPL5 RPL3 RPS23 RPL23A ACTB RPL6 RPL29 NKG7 S100A6 SRGN RPL23 RPS6 S100A10 ATP5F1E CD2 CD3D SEPT7 RPSA EIF1 HLA-C CD8A ARHGDIB RPS15 SERF2 NACA RPL22 RPS13 RPL10A CD8B COTL1 BCL2 RPL36 PPIA YBX1 VIM HSP90AA1 XRCC5 IFI16 H3F3A GAPDH UQCRB MYL12A S100A4 CFL1 NOP53 RPL27 MSL3 TXNIP EIF3E ABRACL FAM107B HLA-E ITM2B RPS21 CD3G RPS4Y1 ANXA1 ITGA4 RPS9 CYBA TNIP3 GIMAP7 TMEM223 HINT1 CLDND1 HNRNPA2B1 RPS20 FYB1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPS12 RPLP1 RPL10 TPT1 RPL13 RPS14 TMSB4X RPL28 LTB VIM RPL13A RPS6 RPL18A RPS27 RPS3 RPS19 RPS3A PTMA RPL5 HSP90AB1 RPL30 RPL3 RPS15A RPS24 RPS13 RPL37A RPS20 RPL23A RPS7 RPS23 RPL14 S100A4 RPS15 S100A6 RPL39 ACTB RPL6 RPL9 RPL29 RPS9 EMP3 RPSA RPS21 RPL37 IL32 RPL23 RPL11 RPL36 HLA-B CALM1 HSP90AA1 RPL10A UBA52 RPL22 RPL27 RPS29 NACA RPL31 HINT1 RPL38 PFDN5 PPIA ATP5F1E S100A11 SEPT7 H3F3A CAST RPL4 S100A10 CFL1 NCL PSMA7 YWHAZ SERF2 RPL24 YBX1 ARPC2 ENO1 SLC25A6 EIF1 MYL12A UBC GAPDH H3F3B RABAC1 HNRNPA2B1 YWHAB CCNI DDX5 RPL36AL PABPC1 HNRNPA3 NPM1 CDC42 NKG7 KIAA1551 PGK1 TPM3 PRRC2C\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPS19 TPT1 RPS27 RPL10 RPS23 TMSB4X RPS15A RPS3A RPLP1 RPL13 RPL30 RPL18A RPL28 RPS14 RPS12 RPS3 RPL29 RPL23A RPL13A RPS24 HLA-B IL7R RPS15 RPS9 RPL37 RPL3 RPS13 UBA52 RPL5 RPS7 RPL11 PTMA RPS29 RPL6 SEPT7 CST7 FYN PTPRC HLA-A HLA-C NKG7 NACA RPS20 RPL37A RPL24 RPL39 CYBA HLA-E CD3E RPL14 RPL36AL SYNE2 S100A4 HMGB1 RPL38 DDX5 RPS21 AES RPL9 RPL10A CD3G PFDN5 GIMAP7 CD2 ACTB YWHAQ SRRM2 CXCR4 MYL12A S100A6 EEF1D TPM3 RPL23 TBCA PNISR RPL31 CD3D ARGLU1 DDX17 CAST EVL ARHGDIB KMT2A PNN UBC SRSF11 FGFBP2 TRGC2 NCL TXNIP BTF3 EIF4A2 LAPTM5 MYL12B RPSA SRSF4 ITM2B ZEB2 STAT3\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X GNLY RPLP1 RPL10 RPL13 TPT1 RPS3 RPS27 RPS19 RPS14 HLA-B RPL28 RPS12 RPL37A UBA52 RPS24 RPL23A RPL30 RPS23 PTMA RPS3A IL32 RPL37 RPS15 S100A6 PTPRC RPL24 RPL6 RPL11 RPS15A HLA-A RPL18A RPS7 RPL22 RPS6 NEAT1 RPSA H3F3A NACA HLA-C RPL3 GIMAP7 CFL1 S100A4 TCF25 CAST SERF2 VIM CST7 PIK3R1 RPS20 RPL13A RPL31 GAPDH GTF3A CALM1 HSP90AB1 NKG7 RPS13 TMPO RPL5 RPS21 PYHIN1 TXNIP NCL EEF1D RPL14 PNRC1 RPL39 YWHAB LUC7L3 HLA-E RARRES3 SAP18 H3F3B DDX17 S100A10 RIPOR2 TLN1 ITM2B LCK UQCRB SH3KBP1 CMC1 SEPT7 GIMAP4 PABPC1 CXCR4 MBP PNN RPL36 KIAA1551 HMGB1 EMP3 FYB1 RPL36AL GZMA CD3G ADAM10\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPS12 TPT1 RPLP1 RPL13 FTH1 RPL10 TMSB4X RPS3A RPS3 RPL11 RPS14 RPL28 RPS27 RPS23 RPL30 RPL13A RPS19 RPS15A RPL3 RPL14 HLA-B RPL6 RPL37A RPL37 RPS6 RPL39 RPL18A RPL10A RPS15 RPS21 NACA RPS9 PTPRC RPS13 RPS20 RPL29 S100A4 HLA-A RPL5 UBC RPS29 EIF1 ITM2B RPS7 RPL22 RPL38 VIM S100A6 PTMA EEF1D CALM1 TIGIT RPL36 RPL9 CYBA RPS24 UBA52 ANXA1 RPL36AL PIK3R1 NEAT1 YWHAB HLA-C EIF4B RPL23 IL7R RPL24 RPSA FYN OST4 RPL23A HINT1 CD2 ATP5MG SERF2 DDX17 RPL27 SARAF RARRES3 SRGN GAPDH PNRC1 ARHGDIB PFDN5 H3F3A CST7 HSP90AA1 NOP53 RNF19A APBB1IP LCP1 DDX5 EMP3 NR3C1 ZFAS1 RPL31 COX7C RPL4 S100A10\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X TPT1 RPL13 RPL10 RPS19 ACTB RPS12 RPS14 IL32 RPS3A LTB RPL30 RPLP1 RPL28 RPL13A RPS27 RPS3 RPS7 RPL3 HLA-B RPL14 RPS13 UBA52 RPS6 RPS23 RPS9 RPL11 HLA-C RPS15A RPS24 RPL6 RPL36 RPL37A HLA-A RPS21 RPS15 S100A4 RPL39 CYBA RPL29 RPL18A S100A6 PTPRC RPL22 PTMA NACA HLA-E RPS20 RPS29 RPL27 RPL9 EIF1 SERF2 CFL1 RPL38 HSP90AB1 RPL23A STAT1 RPL37 IFITM2 CALM1 ATP5F1E KIAA1551 ISG15 SON HLA-F PABPC1 CD48 YWHAZ PPIA RPL10A RPL5 HNRNPA2B1 STK17A HINT1 CALR UBB FTH1 RPSA GAPDH CORO1A PSME1 GIMAP7 XAF1 ZNF217 FXYD5 CD2 GADD45GIP1 NCL CYSLTR1 RPL24 RPL31 SAMD9 TRGC2 ENO1 TAF15 CDC42 PSMA7 SSB\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS12 TPT1 RPL13 IL7R RPL28 RPL10 RPS27 RPS14 RPL18A RPS3 RPS23 RPL3 RPL14 RPL30 RPS3A RPS19 TMSB4X RPL37 RPS7 RPL13A RPL11 RPL39 RPL9 HSP90AA1 RPL29 RPL37A RPL24 RPL5 RPL6 UBA52 RPL23A RPL10A RPS29 HLA-C RPS15A RPSA PTPRC RPS15 RPS13 FTH1 HLA-B CALM1 HLA-A HMGB1 RPS21 RPS20 PTMA RPL36 PFDN5 RPS6 RPL27 NACA RPL38 ITM2B H3F3A AKAP9 RPS24 STK4 GAPDH HNRNPU SP100 PDCD4 TMBIM6 UBC ETS1 RORA GZMA GNAI2 HSP90AB1 S100A4 ATP5F1E UQCRB TOMM7 CST7 RPL22 RPS9 CNOT4 MPHOSPH8 DDX5 AHNAK AMPD3 OST4 LDHA SYNE2 RPS6KB1 CD3E MGAT4A TRGC1 ODF2L CD44 IL32 SREK1 PCM1 STK17A ARHGDIB COX7C TNRC6B MYH9\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X HLA-A RPS19 HLA-B RPLP1 TPT1 RPL10 RPL13 RPS3 GNLY RPS27 PTMA RPL28 S100A4 RPL30 RPS14 RPS7 RPL11 VIM RPS12 RPS15A RPS3A RPL18A RPL29 RPS20 ARL6IP5 NACA RPL37 RPS6 HLA-C RPL14 RPS21 PSMA7 RPS23 RPL3 PRRC2C PCNX4 MSN PTPRC RPL13A CD3D GAPDH RPS15 EIF1 HNRNPA2B1 DNAJC8 RPL23A HLA-E RPL5 CYBA ITM2B HMGB1 CFLAR FTH1 MBP CD8A RPL27 UBA52 RPS13 XAF1 BCLAF1 HINT1 RNF213 KIAA1551 CD44 UTRN RPS29 RPS24 SERF2 SON PNRC1 SP100 CST7 RPL9 APOBEC3G DDX5 PPP1R14B STK4 NFKB1 GIMAP7 IFIH1 CYTIP HNRNPU H3F3A YWHAZ UBC TMEM245 EPB41 RPS9 IL32 ARPC5 IKZF3 HLA-F CMC1 NDUFA1 SEPT7 S100A6 EEF1D SAMD9L\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS3A RPS19 RPS14 RPS3 RPS27 RPS24 RPL10 TMSB4X RPL30 RPS12 RPL14 TPT1 HLA-A RPL13A RPL23A HLA-B PTPRC RPL13 RPS23 RPL18A RPL3 RPL22 RPL39 RPL28 PTMA RPS7 HLA-C FTH1 IL7R RPL29 RPS15 RPL24 RPL37A RPL37 CD3D PYHIN1 AES CIRBP RPL38 IL32 S100A4 CST7 RPS20 CD2 RPS21 UBA52 RPS9 YWHAB RPS15A MORF4L1 RPL11 UBB CXCR4 RPS13 RPL36 RPSA HLA-E EIF1 GIMAP7 CD8A RPL6 BTF3 FAM107B ALOX5AP TPM3 KLF6 RPS29 EMP3 ARL6IP5 TXNIP NKG7 CORO1A RARRES3 EEF1D NACA RPL9 ITM2B RPL36AL LBH H3F3A RPS6 PRMT2 RBM39 AKAP9 TRGC2 CDC42EP3 RSRP1 RPL10A MYCBP2 PNISR PPIA SARAF HSP90AA1 RPL23 PRRC2C HNRNPF TAF7 KLF13\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 TPT1 RPLP1 TMSB4X RPL28 RPS12 RPS27 RPS14 RPL30 RPS15A RPS3 RPL11 RPL10 RPL13A RPL18A RPS3A RPS23 RPS15 RPS6 IL7R RPS7 FTH1 RPL37 RPL14 RPL3 RPL6 RPL37A RPS13 RPS19 HLA-A RPS20 RPL39 PTMA UBA52 HLA-C RPL10A RPS21 RPL29 LTB RPS9 RPL38 RPS24 RPL23A IL32 RPL5 RPL23 HLA-B RPL36 PABPC1 GAPDH H3F3A RPL27 RPS29 RPSA ACTB RPL22 ARL4C EMP3 ARL6IP5 GIMAP7 RPL31 RPL36AL EIF3D BTF3 RPL9 GNAS HMGB1 FXYD5 CXCR4 CFL1 RPL24 PTPRC NBN AC008105.3 JAK1 SMCHD1 CD3E SAMD3 SERF2 CD3D COX6B1 EIF3K PAIP2 TMBIM6 EIF5B CYBA ATP5F1D PNISR LYAR SON BIN2 CLEC2D S100A4 TOMM7 PIK3R1 KMT2E NCL HDGFL3 EEF1D\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X RPLP1 RPS12 RPL10 TPT1 RPL28 RPS27 RPS19 RPS14 RPL13 RPL30 RPL6 RPL3 RPS3A HLA-B RPS3 RPL18A RPS15A HLA-A RPS13 RPL39 RPS6 RPS23 RPS15 RPL13A RPL14 RPS7 RPL5 RPL23A RPL11 HLA-C RPS20 PTMA RPL9 RPL29 RPS9 RPS21 RPL38 IL32 RPL24 UBA52 RPL37 PTPRC ACTB RPSA SEPT7 EIF1 SERF2 CST7 ARHGDIB RPL10A RPS4Y1 GIMAP7 GZMA VIM ANXA1 RPL36 GAPDH H3F3B RPL36AL NKG7 CLDND1 S100A6 BTF3 RPS24 NACA IL7R HNRNPA2B1 HMGB1 UBC ATP5F1E RPS29 RPL23 GIMAP4 MRPS6 CD2 H3F3A KLF6 RPL37A ANP32B EEF1D ARPC2 SLC25A6 LAPTM5 MYL12B EZR CD99 KIAA1551 SUMO2 UBB HSP90AB1 PFDN5 RPL27 EMP3 ITM2B HINT1 OST4 YWHAB TXNIP\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPL13 TMSB4X RPS12 RPS27 RPS3 RPL30 RPL10 RPL28 RPL13A RPS19 RPS3A RPS6 RPS14 RPS23 RPS7 RPS15A RPL11 RPS24 RPL3 PTMA RPL37 RPL14 RPL23A RPS20 RPL38 RPL29 HLA-A RPL18A RPL31 HLA-B GAPDH RPS9 RPL37A RPL5 HLA-C CXCR4 RPS13 RPL39 RPL9 RPL6 UBA52 RPS15 RPS29 HMGB1 PTPRC NEAT1 RPL36 SPN BTF3 CLEC2D NKG7 KIAA1551 FYN RPS21 HSP90AA1 RPL24 S100A4 RABAC1 ARL6IP5 GBP4 CST7 STK4 NOP53 RPL36AL EEF1D PLEK AKAP13 SKP1 DDX17 FNBP4 PPIA APOBEC3G UBC TRIR NCL NACA EIF3A CHURC1 IL32 TOMM7 PNRC1 S100A6 NCBP3 PFDN5 EIF1 CD2 SEPT7 NFKBIA SLFN12L BTN3A2 DOCK8 FKBP2 RBM6 MBP SERF2 LBR RPSA\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TMSB4X RPL10 RPS12 RPL13 TPT1 RPS19 RPS27 RPS14 RPS3 RPL30 RPL13A RPL28 RPS7 RPS23 RPL11 RPL3 NEAT1 RPS21 HLA-B RPS15A RPL18A PTMA PTPRC RPS3A RPL9 RPL23A HLA-C RPS6 RPS13 RPL5 RPL14 RPL37 RPL37A RPS9 HLA-A RPS15 RPS24 RPL39 RPL6 CD2 RPL29 NACA HSP90AA1 RPL27 VIM IL32 UBA52 SEPT7 RPL24 RPS29 RPSA RNF213 IL7R ACTB S100A4 EMP3 CD3D HSP90AB1 ANXA1 KIAA1551 S100A6 RPL36 H3F3B GIMAP7 KLRD1 PSMB9 PTP4A2 PSMA7 EIF1 GAPDH PRPF38B MRPS6 PNN RPL36AL IFI16 KTN1 YBX1 YWHAZ PRRC2C GBP4 HNRNPA2B1 LYAR CST7 CALM1 COX7C ARL4C CFL1 PARP14 RPL4 FTH1 CORO1A SRRM2 GNLY SP100 NKG7 MYL12A TPM3 ISG20\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 IL7R RPLP1 TPT1 RPL13 RPL10 RPS14 RPS12 TMSB4X RPS19 RPL28 RPS27 RPS3 RPL13A RPS23 HLA-B RPS24 RPL6 RPL9 RPL39 RPL23A S100A4 RPS6 HLA-C RPL14 RPS3A RPL11 RPS15 RPL30 RPL3 RPS7 RPS20 GAPDH PTPRC PTMA RPL36 RPS21 RPL18A ACTB EEF1D PABPC1 RPL24 RPS15A HLA-A RPS29 NEAT1 RPL29 RPL37 RPL5 KIAA1551 TXNIP CYBA FTH1 JAK1 PPIA RPL38 SERF2 BTF3 RPL37A RPL27 CST7 RPL36AL EMP3 RPL23 RPS13 RPSA HINT1 IL32 LCP1 RPL4 UBA52 AKAP13 RPS9 LTB GIMAP7 EIF5B HSP90AA1 CD48 KIF20B SLC38A2 ARGLU1 PHACTR2 SEPT7 PCM1 GOLGA4 PAG1 H3F3A NACA PSIP1 MYL12B COX7C ZBTB7A ITM2B RIPOR2 SPCS3 VIM RPS6KA3 GPX4 RPL31 PNRC1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS12 TMSB4X RPS19 RPL13 RPS27 RPS15A RPS23 RPS7 RPL10 TPT1 RPL14 GNLY RPS3 RPL28 RPL39 RPS3A RPL11 RPL30 HLA-A RPS15 HLA-B RPL37 RPS14 RPS6 RPL6 RPL23A RPL29 RPL3 RPL18A RPL24 RPL37A RPL13A RPL5 RPS9 HLA-C RPS13 RPS24 RPL36 UBA52 S100A4 RPS21 NKG7 PPIA RPL27 YBX1 NACA CALM1 RPS29 MSN RPSA UBC PTPRC PRF1 RPS20 GAPDH AES CD3G CYBA RPL10A PNISR EMP3 RPL31 COX7C S100A10 WDR60 CLEC2D ZNF644 IL32 N4BP2L2 SP110 RIPOR2 ATP5F1E PYHIN1 HNRNPA3 CD74 KIAA1551 CALCOCO1 VIM BTN3A2 COPB1 DRAP1 RUNX3 JUND CST7 CCT6A MMP24OS PNRC1 FTH1 BOD1L1 CAPZB EEF1D PCMTD1 CAST SNRPD2 PTMA CD3E GPR174 HNRNPU\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL10 TMSB4X RPS14 TPT1 RPL28 RPS3 RPS19 RPS27 RPL13 RPL13A RPS3A RPL30 RPS12 RPL14 PTPRC RPS15 NKG7 RPS23 RPS15A RPL37A RPL39 RPL11 RPL23A RPL6 HLA-A RPL37 RPL18A RPS7 HLA-B RPL24 RPS29 RPL36AL RPS9 PTMA RPL5 NACA UBA52 RPS21 RPSA SEPT7 RPS20 RPS6 RPL10A RPS24 HLA-E BTF3 RPL29 RPL3 SLFN5 GIMAP4 CYBA IL32 KLRC2 RSRP1 EIF1 CMC1 EIF3A RPL38 ITM2B RPL4 FBXO22 CST7 C1ORF21 RPL9 MSN IL7R RTF1 VPS28 C12ORF75 HLA-C LBH EMP3 LYST HNRNPU YWHAZ HMGB1 UBE2H H3F3A ATP5F1E STK4 ACTB ARF6 RPL22 PRPF38B AC022075.1 TTPAL RIPOR2 N4BP2L2 CD3D FUS LMO4 PTGES3 SRSF7 SERF2 PPIG HNRNPK HINT1 CNBP\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL10 RPS12 TPT1 RPL13 FTH1 RPS14 TMSB4X IL7R RPS3A RPL11 RPL28 RPS3 RPS23 RPS15A RPS19 HLA-B RPL6 RPS15 RPL39 RPL13A RPS24 RPL23A NACA RPL3 RPS13 RPL14 RPL37A RPL29 RPL36 HLA-A RPL30 RPS27 PTMA RPS20 RPL9 ACTB RPL5 RPL27 RPS21 RPS7 RPL18A RPL24 RPL22 S100A4 RPL37 PFDN5 CYBA RPSA UBC EIF1 NEAT1 HLA-C UBA52 RPL10A HMGB1 SYNE2 SEPT7 RPS9 VIM PPP1R14B NKG7 RPL23 EEF1D HNRNPC RPL36AL HSP90AB1 RPL38 TXNIP RPS29 GZMA CD3E TNFAIP3 H3F3A MYL12A ANXA1 JAK1 ITM2B RPL31 RPS6 LDHA FXYD5 LCP1 SERBP1 SLC25A3 CXCR4 NCL YWHAB HINT1 EIF4B OFD1 EIF3G GNLY LTB HNRNPA2B1 CLEC2B CFL1 GAPDH HNRNPA3\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPS12 TMSB4X RPL13 HLA-B RPS3 HLA-A RPL3 TPT1 RPL10 NKG7 RPS3A RPL13A RPS14 PTMA RPS19 RPS27 RPL28 HLA-C RPLP1 RPL18A RPS6 RPL14 RPS15A RPL11 RPS24 RPL23A RPS23 RPS7 PTPRC HSP90AA1 RPS29 RPL30 CALR CFL1 UBA52 RPL24 HSP90AB1 RPL38 IL32 CALM1 RPL27 YWHAB EMP3 GNLY H3F3B FGFBP2 CYBA HLA-E RPS20 HINT1 RPL22 RPL29 RPL36 CD3G RPS15 RPS9 TXNIP ACTB RPL37 RPL6 APOBEC3G SRRM2 CCL4 C12ORF57 VIM RPL5 GNAI2 SET S100A10 RPL39 ANXA1 S1PR4 HNRNPU SRGN MIER1 CD81 CST7 RPL23 ANKRD11 UBC RPL9 RBM39 EIF3F PFDN5 SSX2IP ITM2C ITM2B SP110 ASH1L ATP5MF DOCK8 HNRNPAB SERBP1 NACA CCDC12 EEF2 CKAP5 PPP1R14B SF1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X RPL10 RPLP1 RPL13 TPT1 RPS27 RPS12 RPS3 RPL30 RPS15A RPS23 IL7R RPS14 PTMA RPS19 RPL39 RPS3A RPL13A RPS24 RPL28 RPL3 HLA-A RPL37 RPL5 RPL37A RPS20 RPS21 PTPRC RPL6 UBA52 GNLY RPL14 HLA-B RPL27 RPS7 HNRNPA2B1 RPS15 RPL23A RPS13 MBP RPL18A RPL11 RPS6 ARL4C RPL29 RPL36 LYST RPS29 FTH1 RPL10A AAK1 HSP90AA1 UBB CCNI ATP5F1E RPL24 AKAP13 HLA-C SERF2 RPS9 DNAJC1 PNISR EZR RPL9 DDX46 PTGES3 HNRNPU ARID5B PURA NEAT1 EIF1 SET RHOH TBC1D2B SSB SEPT7 ACTB LUC7L3 GNAI2 RNF219 RPL22 NFAT5 AFTPH PNN VIM EMP3 NOP53 YY1 H3F3A EEF1D SEPT6 JAK1 JAML PPP2R5C YBX1 CALM1 GIMAP4 SUMO2 RTRAF\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPL10 RPLP1 RPS12 RPL13 TMSB4X RPL13A RPS3 RPS14 RPL28 RPL39 RPS3A RPL30 RPS23 RPS6 RPS13 RPL11 RPL18A RPL3 RPS27 RPS15A RPS19 RPL6 IL32 LTB RPL29 RPS24 RPL9 HLA-B RPL37A RPL14 RPL37 RPL23A RPSA S100A6 HLA-A RPS15 RPS9 NACA UBA52 RPL5 PTMA RPL38 RPL10A RPL27 S100A4 RPL22 GBP4 HLA-C RPL23 PTPRC RPS29 IL7R RPS21 RPL24 RPL36 RPS7 BTF3 HINT1 ACTB ATP5F1E LDHB COX7C RPS20 GAPDH GBP1 RPL31 ANXA1 PPIA SERF2 PFDN5 GTF3A GIMAP4 NUCB2 EIF3E HNRNPU MRPS6 ARL4C RPL36AL LYAR CALR EPB41 IKZF2 CD3E NPM1 PRRC2C FXYD5 STAT1 TOMM7 CORO1A CALM1 RNF213 CDC42 EIF1 FGFR1OP2 TNRC6B UBC BAZ1A CD3D\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TMSB4X RPS19 RPS14 RPL10 RPL13 IL7R PTMA HLA-B TPT1 RPS12 RPS27 RPL28 RPS15A S100A4 PTPRC RPL13A HLA-A RPL11 FTH1 HLA-C RPS15 IL32 S100A6 RPL37 RPS23 RPL39 RPL30 RPS13 GBP5 RPL9 RPL14 RPS29 RPL37A HSP90AB1 RPL18A RPL23A RPL27 RPS24 RPS20 NACA RPS7 PNRC1 SRGN HLA-F RPL3 ITM2B UBA52 RPS9 RPL29 CYBA VIM CD2 RPS3A RPL38 NPM1 GIMAP7 TPM3 LTB RPL36 ANXA1 RABAC1 RPL24 RPL10A RPS6 BOD1L1 ATP5F1E HNRNPA3 HNRNPA2B1 HSP90AA1 PIP4K2A RPS21 RPL5 NEAT1 PBXIP1 LYSMD2 ALOX5AP PSME1 HLA-E RPS27L JAML TPR CEBPZ ANKRD11 TMBIM6 IKZF3 RPL6 CDC42SE2 SEPT7 ARPC2 CALM1 EVL APOL3 SUMO2 COX6B1 JAK1 BIRC3 RPSA SARAF\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X RPLP1 RPS12 RPL13 RPS27 TPT1 RPS19 RPS3 RPS3A RPS14 RPL10 PTPRC RPL11 NKG7 RPS7 RPL14 HLA-B RPL37 RPS15A RPS23 RPL5 RPS6 RPL28 RPL30 HLA-A RPL29 RPL9 RPL6 RPS29 RPS24 PTMA CD2 RPS13 HLA-C UBC CALM1 RPL18A RPS21 RPS9 RPL3 CST7 IL32 RPS15 CASP8 ARL6IP5 RPL39 H3F3A RPL13A STK17A GIMAP7 RPL37A GNAS ACTB PRRC2C SET DDX5 EPB41 S100A6 RPL24 RPL23A NR3C1 SF1 EMP3 RPL22 ANXA1 RPL23 RPL10A PYHIN1 RPL38 TOMM7 LRPAP1 IL7R EIF1 EIF5 CMC1 PSMD8 GZMA C4ORF3 COX7C HLA-F LCP1 RBM8A SERF2 GPX4 GIMAP4 DDX17 C1ORF21 TIGIT MRPS6 CD84 RFC1 ATRX GAPDH CD3G RABAC1 MYL12B FYB1 CYBA HNRNPK\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TMSB4X TPT1 RPL10 RPS14 RPS12 RPL13 RPS27 RPL28 RPS19 RPS3 RPS3A IL7R RPL3 RPS23 RPL6 RPL30 S100A6 RPL23A RPL18A PTMA RPS15A RPL37 HLA-B RPSA RPL14 RPL39 RPS7 S100A4 RPL37A RPS6 NACA RPL9 RPS9 RPL5 RPL29 RPS21 LTB RPS20 RPL13A RPL10A RPL11 NKG7 RPL24 DDX5 RPL22 ARL4C RPS24 CALM1 RPS15 RPS13 RPL23 EZR PTPRC HLA-C YBX1 UBA52 UBB S100A10 H3F3A EMP3 VIM IL32 FTH1 TXNIP YWHAZ HLA-A PABPC1 NOP53 SEPT7 SYNE2 RPL38 ATM NCL RPL36 RPL31 CD3D RPL27 RPS29 H3F3B ACTB GAPDH CYBA EIF1 S100A11 HSP90AA1 ANXA1 GOLGA4 SERF2 HMGN3 TPM3 ENO1 NPM1 ATP5MC2 EIF3E RPL4 JAML EEF1D SLFN5\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X RPS12 RPS3 RPL10 PTMA RPS19 RPL30 RPS14 RPL3 RPL13 TPT1 RPLP1 RPS27 RPS23 RPS24 RPS13 HLA-A RPS7 ACTB HLA-B RPS15A RPL5 RPL28 RPL6 RPL37 RPS3A RPL18A CXCR4 RPL29 RPS29 IL7R RPL37A RPL14 RPL23A RPL11 ATP5F1E H3F3A EEF1D NACA RPL39 TRGC2 RPL9 RPS20 RPS15 GIMAP7 UBA52 RPL27 RPL4 RPS21 KIAA1551 RPL36 CD3D CD74 RPL13A HNRNPA2B1 RPL24 CST7 IL32 SP110 RPL31 RPL10A FTH1 EOMES EIF1 HLA-E UQCRB CHD4 PTPRC SERF2 SYNE2 HLA-C UBE2I SCAF11 PFDN5 SUMO2 TMBIM6 HSP90AB1 SKP1 RPS27L SET RPL36AL GNAS ARPC2 DDX24 PPIB PPP2R5C CCNI HNRNPDL ARL6IP5 CD2 CYLD PNISR CD99 MYCBP2 LAPTM5 SLC25A3 SON PARK7 SH3KBP1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPLP1 RPL10 RPS12 RPL13 RPS27 RPL13A RPS14 RPS3A RPS15A RPL28 RPL30 RPS23 RPS3 RPL11 RPS6 RPS19 TMSB4X RPL3 RPL37A RPL18A RPL37 RPL14 RPL29 RPS21 RPL9 RPL39 RPL5 RPS15 RPS20 RPL6 RPS7 RPS13 RPS9 RPL23A RPL10A RPL31 RPS24 UBA52 RPS29 RPL23 RPL24 RPSA RPL36 PTMA NACA VIM HLA-B HLA-A LTB RPL27 IL7R RPL22 RPL38 PTPRC ACTB SYNE2 RPL4 PABPC1 HINT1 BTF3 EIF1 ITM2B GAPDH IL32 NAP1L1 HSP90AB1 SET STAT1 EEF1D PFDN5 GIMAP1 YBX1 SLC25A6 ANXA1 RPL36AL GBP5 KIF2A STK17A CD2 UQCRB PRPF40A SARAF TOMM7 S100A4 SEPT6 GIMAP4 DDX5 CAST CFL1 OST4 RNF213 LDHA PNISR CD3D ARL6IP5 ZFAS1 MYL12B LDHB\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Effector CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 FTH1 RPL13 TPT1 RPL13A RPS3A RPL10 RPL18A RPS12 TMSB4X RPS19 HLA-B RPS29 RPS27 RPL29 RPS15A RPS24 RPS3 RPL11 RPL30 RPL28 PTPRC SARAF RPS14 RPL23 HLA-A PTMA HLA-C RPS7 RPL14 RPL5 FYB1 RPL6 RPL37 PPP2R5C RPL36 IL7R RPL9 HSP90AA1 UBA52 RPS6 RPS15 CLEC2D RPS13 RPL3 RPL24 ANXA1 PIK3R1 RPL27 CALM1 RPL10A GIMAP7 RPL23A YWHAB HNRNPA3 ARPC2 RPL37A RIPOR2 SRRM2 RPL4 STK4 DDX5 LRRFIP2 NEAT1 LUC7L3 HLA-E UBC TGOLN2 ANP32B NACA RPS23 CLDND1 H3F3B SMCHD1 SERF2 PCM1 AC025164.1 TAF1D PNISR RPL39 ZNF292 HNRNPU SP3 GHET1 NCL DDX46 ITGA4 DEK PCBP2 SRSF5 GAPDH HMGB1 DNAJB6 ARID5B JMJD1C LPXN RPL31 SF1 NDUFA12\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 MALAT1 CXCL5 VIM TPT1 IL1B THBS1 TMSB4X TYROBP PTMA S100A11 CXCL3 NFKBIA S100A6 CD44 NEAT1 S100A10 FCER1G CD300E PKM ANXA5 H3F3B H3F3A ACTB MT2A MT1X HLA-B CD14 CXCL8 DYNLL1 RPL28 SRGN PID1 FOS RPL9 HIF1A PRDX1 MARCKSL1 APLP2 ATP6V0B EIF1 GAPDH SLC7A11 ATP5F1E CTSZ LIMS1 ANPEP UBA52 RPL37 ATP13A3 HNRNPU MSN DDX5 C15ORF48 SERF2 CYBA HSP90AA1 GPX4 LAPTM5 RPL13 PABPC1 RPLP1 CFL1 ADSS RPS3 LYZ RPL10 INSIG1 PFDN5 ITGB1 SRRM2 TLN1 ACSL4 RPL6 RPS15 DOCK5 RPL36AL RPS12 RPL11 ENG RPS6 PFKFB3 GNG11 SLC4A7 COX6A1 LCP1 HNRNPA2B1 PRPF40A PLAUR SQSTM1 PSAP RPS24 UBC IQGAP1 LGALS3 ATP6V0D1 SUB1 TCF25 YBX1 VAPA\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 MALAT1 TMSB4X S100A9 ACTB MT2A CYP1B1 ANXA5 VCAN TYROBP H3F3A TPT1 S100A11 THBS1 S100A6 S100A10 NEAT1 FCER1G CXCL5 LYZ NCF1 S100A4 SERF2 MAFB C15ORF48 ANPEP GAPDH NPC2 PKM ATP5F1E CYBA MXD1 AIF1 LAPTM5 ANXA1 CD44 HLA-B CALM1 UBC IL1B ANXA2 TXNIP ARPC2 PSAP MMP9 SDCBP SOD2 H3F3B CAPZA2 RAC1 LCP1 CFL1 SLC39A8 SLC43A2 DOCK4 DMXL2 UBE2D3 C1ORF122 AP1S2 RPL28 NCOA4 PDE4DIP CSTB HLA-A PSMB1 TACC1 HMGB1 TPM3 CD14 BAZ1A EIF1 ARHGAP18 RPL36AL DHX29 FLNA CDC42 FUCA1 ATP6V0B TAGLN2 CTSS CSF1R LIMS1 EEF1D RPS15 OLR1 ENG DDX5 TPM4 RBPJ CYSTM1 FAM49B EML4 NAP1L1 PLEKHO1 SCAF11 TIPARP PSTPIP2 PNRC1 SLC7A11 UNC93B1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 MALAT1 MT2A CXCL5 TPT1 CXCL8 MT1H RPLP1 RPS12 NEAT1 RPL13 IL1B RPL10 VIM TYROBP TMSB4X RPL28 RPS14 S100A6 FCER1G LYZ H3F3A PTMA RPL30 CYBA SRGN HLA-B ANXA5 RPL11 RPS19 RPS27 RPL9 ANXA1 HLA-A RPS15 ACTB RPL39 MT1F RPS23 GAPDH S100A11 RPL37 CD14 MT1E RPS3A MT1X SOD2 RPS15A RPL14 CD44 RPS3 IL7R NACA SERF2 RPL18A RPS21 RPS7 RPS24 RPL3 ARPC5 C15ORF48 LAPTM5 RPL23A PFDN5 RPL37A RPL6 ATP5F1E RPS20 RPS13 RPL23 RPS9 RPL36 RPL13A S100A10 EREG ARPC2 NAMPT HLA-C MARCKS UBA52 HMGB1 ANXA2 APLP2 TYMP RPL22 SERPINB2 RPL24 PTPRC S100A4 TMEM50A ATP6V0B CYP1B1 HLA-E BASP1 S100A9 PSMA7 CTSS GSTP1 IDO1 LTB\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPS19 TPT1 RPL13 RPL10 RPLP1 RPS27 RPS13 TMSB4X RPL29 PTMA RPS14 RPS3A RPL14 RPL39 RPL13A RPS12 RPS15A RPL30 RPL28 RPL9 RPL23A RPS23 RPL18A RPS7 RPS24 RPL37A RPL23 RPL27 RPL24 RPL3 RPSA RPS15 RPS29 RPS20 HSP90AA1 NACA UBA52 RPL36 RPL31 RPS27L RPS21 RPL5 SARAF TRIR EIF1 RPL6 DDX5 RPL11 HNRNPA3 RPL22 HSP90AB1 PPIA CLEC2D H3F3A RPL37 ACTR2 PSMA7 HMGB1 SERBP1 PFDN5 TMEM59 HNRNPU PTPRC ACTB SLC25A5 RPS3 TAX1BP1 GIMAP4 TUBB4B GNAS GSTO1 RPL38 UQCRB EIF4G2 ATP6V1G1 YWHAZ MYCBP2 SEPT6 EEF2 SF3B2 RBM8A YWHAB PRR13 ARL4C PNISR RPL36AL IL7R RPL10A TOMM7 HNRNPA2B1 FTH1 NCOR1 HNRNPK NCL FGFR1OP2 HIST1H4C RRP7A ATF4 RAN\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 MALAT1 LYZ MT2A C15ORF48 TPT1 NEAT1 CYP1B1 TMSB4X S100A11 ANXA5 VIM ACTB TYROBP CXCL8 CYBA RPLP1 IL1B MT1X RPL28 RPL10 SERF2 S100A9 LAPTM5 CD44 UBA52 MT1E LCP1 EMP3 ARPC2 FCER1G NCF1 RPS12 HLA-B S100A10 FBP1 TGFB1 ATP5F1E KYNU RPL13 RPS27 GAPDH SLC11A1 H3F3A RPS24 HSP90AA1 INSIG1 EIF1 TPM3 RPS19 ARPC5 PID1 S100A6 NPC2 CTSZ PFDN5 LIMS1 FPR3 RPL23 NFKBIA SRGN PSAP MT1F GNG5 RPS7 LGALS3 ANXA2 RPL11 PTMA PKM GRB2 HNRNPA2B1 OLR1 RPS23 RPS3 CFL1 CYP27A1 MT1M PTPRE ACTR3 RPS13 RPL39 RPL6 C1ORF122 COTL1 SPI1 PDE4DIP RHOA SLC7A11 ELOB BACH1 COX6A1 MMP9 METTL9 UBB CD53 DYNLL1 SDCBP SMIM25 RPS15\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 TPT1 S100A6 RPS27 CXCL5 RPLP1 VIM RPL10 RPL13 SERPINB2 MALAT1 TMSB4X RPS14 RPS12 THBS1 PTMA CCL2 RPL28 RPS19 RPL30 CYP1B1 RPL6 RPL13A S100A4 HLA-B RPS3A RPS9 RPL3 RPS6 RPL14 RPS15 EIF1 RPL18A RPS7 ATP5F1E RPL5 RPL37 ACTB H3F3A IL7R CCDC88A S100A11 ANXA5 RPL10A FUCA1 NEAT1 RPS23 STAT1 RPL37A NAP1L1 PRRC2C CALM1 RPS13 RPL38 CFL1 RPL36 HNRNPA2B1 RPL39 RPL23A CTSB CD44 EEF1D MARCKS TAGLN2 LCP1 C15ORF48 RPS20 S100A9 SERF2 YWHAZ RPS3 GNAS ACTR2 IL32 TPM3 HMGB1 ANXA1 NDUFA4 SRGN LIMS1 HINT1 HSP90AA1 ZEB2 JAK1 RPS24 TYROBP SOD2 RPL11 S100A10 GPX4 RPL9 DAD1 KYNU MAT2B UBA52 CAST TOMM7 UBB TXN RPL22\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 MALAT1 LYZ CXCL8 TPT1 S100A6 RPLP1 RPL10 TMSB4X IL1B S100A9 RPL13 EREG HLA-B NEAT1 RPL28 RPS19 RPS12 S100A11 S100A10 VIM RPS27 RPS3A RPL39 RPL18A LTB RPS14 S100A4 C15ORF48 PTMA RPS23 CD14 CCL2 RPL13A RPS24 RPL30 ACTB SERF2 GAPDH FCER1G RPS15 RPS9 RPS15A ANXA5 HLA-C CYBA RPS3 RPL9 RPS21 SRGN RPL23 ARPC2 CD44 RPS7 KYNU RPL11 CFL1 RPL3 RPS20 IL32 HLA-A RPL36 RPS6 TYROBP HSP90AA1 RPL37A H3F3A MRPS6 PKM VCAN EMP3 RPL29 ISG15 HSP90AB1 RPL23A LAPTM5 NFKBIA HIF1A RPS13 RPL37 UBA52 RPL6 RNF213 PTPRC LCP1 RPL5 MYL12A PRDX1 RPL38 ATP5F1E ANXA2 CYP27A1 RPL10A NACA ANXA1 CTSS ATP6V0B HLA-E EIF1 PFDN5\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 FTH1 TMSB4X TPT1 ACTB S100A9 RPLP1 RPS12 RPL10 S100A11 LTB LYZ RPL28 S100A6 HLA-B RPL13 RPS27 MT2A IL32 TYROBP C15ORF48 RPS15A HLA-A RPS23 RPL30 RPS14 RPL9 VCAN RPS3A RPL11 H3F3A RPL39 FCER1G RPL18A RPL13A RPS7 PTMA S100A4 RPS13 RPS19 RPS3 RPS24 MT1X RPL37A HNRNPA2B1 SRGN RPS15 RPL23A RPS9 ANXA5 RPS6 RPL23 RPL29 NACA HSP90AA1 CYP1B1 RPS29 DDX5 RPS20 SERF2 HLA-C RPL6 UBA52 PFDN5 H3F3B ARPC2 CFL1 EIF1 DYNLL1 IFNGR1 GNAS ATP5F1E NEAT1 LAPTM5 CD44 LCP1 EMP3 HSP90AB1 RPL37 RAC1 CD2 RPL36AL RPL38 RPL3 RPL14 S100A10 VIM RPS21 CALM1 RNF213 HINT1 PKM RPL27 RPL24 CYBA ARL6IP5 RPL5 YWHAZ COX7C KMT2E\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 MALAT1 HLA-DRA NEAT1 CYP1B1 ACTB S100A9 TPT1 HLA-DRB1 LYZ S100A11 MMP9 CD74 FCER1G MRC1 TYROBP TMSB4X VIM S100A6 CD14 HLA-B CYBA CXCL5 PTPRE C15ORF48 TXNIP ANXA5 H3F3A EREG ARPC2 CALR SRGN HLA-DPA1 SERF2 CTSB EIF1 CFL1 HBEGF ARPC5 HLA-DQA1 S100A4 AIF1 LCP1 ANXA2 NPC2 FCGR2A S100A10 FBP1 NFKBIA TYMP HLA-DQB1 PDIA3 TPM3 RBPJ GAPDH PLEKHO1 SLC7A11 CTSS VMP1 IL7R DDX5 PKM CTSH PTPRC CTSZ HLA-DMA CD44 UBC IL3RA RPL36AL CXCL8 ZFP36L1 CXCL16 RPS9 ITGB2 RHOA CD53 GSN SDC2 PLA2G7 LGALS3 ATP5F1E YWHAZ LAPTM5 ATP6V0B SLC11A1 PTMA FKBP2 RPL28 TPM4 PPIB PFDN5 ACTR3 PLAUR AP2S1 SPI1 TLN1 LIMS1 GRB2 C1ORF122\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 MALAT1 CCL2 CXCL5 CXCL8 S100A6 TPT1 TMSB4X MT2A CD14 S100A11 HIF1A CXCL1 SRGN GAPDH NFKBIA IL1B VCAN TYROBP EIF1 VIM NAMPT NEAT1 S100A10 CD44 HLA-C S100A9 NPC2 ANXA5 TYMP H3F3A LAPTM5 DYNLL1 FCER1G ATP5F1E RPLP1 ACTB UBA52 C15ORF48 CD300E H3F3B STAT1 BACH1 SOD2 PID1 RPS13 SDC2 RPL10 LYZ RPL13A HLA-B RPL36AL OLR1 RPL28 SPI1 EMP3 CYTIP RPL11 SON PKM CXCL3 ACTR3 ADSS APLP2 MAFB EEF2 HSP90AA1 EFHD2 CCDC88A TCF25 SDCBP ANPEP SLC3A2 CTSS SERF2 ATP6V0B LCP1 RPS3 MMP19 COX6B1 LIMS1 PFDN5 MARCKSL1 S100A4 HLA-A HNRNPA2B1 AP1S2 ARPC5 EMILIN2 CTSZ CCL3 ANXA2 RPL13 RPL14 CARD16 NCL VASP REL HIPK2 SRRM2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 FTH1 HLA-DRA ACTB S100A9 HLA-DRB1 NEAT1 CYP1B1 FCER1G IL1B S100A11 TYROBP MT2A VIM CD74 HLA-B SRGN S100A6 C15ORF48 EIF1 HLA-DPA1 TPT1 ANXA5 IL3RA NPC2 TMSB4X CTSS UBC GAPDH HLA-E ARPC2 INHBA PRDX1 CD53 AIF1 EMP3 PLAUR CYBA LGALS3 SOD2 ATP6V0B CLEC4E CALR H3F3A CD44 CXCL8 ARPC5 ALOX5AP SERF2 CTSB HLA-C S100A10 WARS YWHAB HLA-DQA1 CTSZ PTPRE HLA-DQB1 ATP6V0E1 IL4I1 PSAP CD40 PLA2G7 IL19 DDX5 ANXA2 RBPJ HLA-DMA TPM3 PPIF TALDO1 CALM1 HSP90AA1 MRC1 TNFAIP8 TYMP HLA-A REEP5 IFI16 CDKN1A MYL12B ACTR2 PTPRC STAT1 SPI1 LCP1 CSTB ITM2B GNAS BAZ1A H2AFY CXCL16 LYZ GLUL ACTR3 PLEKHO1 ITGB2 SERP1 BID LAPTM5\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 MALAT1 CXCL5 THBS1 S100A6 TPT1 TYROBP NEAT1 ACTB PTMA TMSB4X SERF2 S100A11 FCER1G SRGN VIM ANXA5 RPL13 RPL10 CALM1 ATP5F1E H3F3A MMP9 ARPC2 S100A10 S100A4 EMP3 GAPDH SPI1 H3F3B RPS12 RPS3A RPL28 RPS20 HLA-B RPLP1 RALA PKM RPS15 PRDX1 RPS19 CCNI EIF4G2 FYB1 HSP90AB1 ATP13A3 TALDO1 RPS23 RPS15A PID1 RPS24 ELOB UBA52 RPL37A ANXA2 SLC4A7 AP1S2 SLC7A11 RPL24 VMP1 PLEKHO1 SUB1 RPL14 GNAI2 RPL13A NAMPT ACTR2 CTSZ KYNU LIMS1 EIF1 RPL10A CD14 HSP90AA1 TLN1 CYBA MTDH RPL36AL RPL11 RPS14 TPM3 RPL18A DEK HMGB1 RPS13 CDC42 INSIG1 RPS6 YWHAZ CXCL1 RPS27 IQGAP1 RPL30 C1ORF122 RPL23 CXCL8 ENG TGFBI ATP6V0B RPS7\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 CXCL8 CCL2 MALAT1 CXCL5 MT2A FCER1G CYP1B1 MMP9 S100A11 IL1B S100A9 VIM CXCL1 ACTB C15ORF48 ANXA5 CYBA CXCL3 LGALS3 MT1H CTSL CSTB TPT1 FBP1 GLRX TYROBP SERF2 HLA-B TMSB4X VCAN S100A10 RPL10 H3F3A ARPC2 SERPINB2 NEAT1 RPLP1 RPS27 ARPC5 RPS9 SLC7A11 CALM1 RPL28 HSP90B1 NAMPT PRDX1 RAC1 ATP5F1E GAPDH SRGN EIF1 FLNA SERP1 SDF2L1 RPL11 ALOX5AP CFL1 CTSZ CD48 RPS13 TLN1 EMP3 SLC3A2 RPL9 RPS19 TXN LCP1 TPM3 CCL3 RPS20 CD14 SPI1 GSTO1 PTMA RPS15 MRC1 PPIB PTPRE NPC2 HLA-C ATP6V0B MRPS6 HNRNPA2B1 SEC61G PFDN5 TSPO HSPA5 MT1X CD44 CALR RPL3 RPL6 ACTR3 MT1F COTL1 HSP90AA1 CDC37 TYMP PSMA7\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 MALAT1 S100A9 RPL10 VIM RPS14 TPT1 RPS12 RPL13 RPL28 C15ORF48 RPL30 RPLP1 RPS3A RPS27 RPS23 RPS6 RPL11 RPL13A RPL3 CYP1B1 NEAT1 HLA-B RPS13 RPS3 S100A11 RPL29 RPL18A RPL9 PTMA RPL39 RPS15A RPL37 TMSB4X RPS21 ACTB ANXA5 IL1B RPS15 RPS19 H3F3A S100A10 RPL10A RPS9 TXN SRGN TALDO1 RPL36 RPL22 RPS7 RPL23A UBA52 HLA-C ARPC2 RPS29 SERF2 RPS20 PFDN5 RPL14 RPL37A TYROBP C1ORF122 RPSA RPL5 LYZ H3F3B NACA RPS24 RPL6 GPX4 DYNLL1 RPL24 RPL38 NFKBIA FCER1G RPL27 RPL23 NCF1 UBC GAPDH HLA-A CD14 RPL31 EREG GNAS PTPRC HINT1 ATP5F1E CYBA EEF2 GNAI2 UQCRB CALM1 TPM3 ANXA2 RAC1 HSP90AB1 SLC7A11 SARAF PSMA7\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 TMSB4X MALAT1 S100A9 TPT1 S100A6 LYZ ACTB S100A10 FCER1G PTMA NEAT1 TYROBP MT2A S100A11 S100A4 RPLP1 RPL28 RPL10 VIM CYBA RPL13 RPS15A RPS15 SERF2 CYP1B1 RPS3A RPL23 SRGN LCP1 MMP9 RPS24 ANXA5 CTSZ H3F3A ARPC2 HLA-B RPS14 MARCKSL1 PKM NACA C15ORF48 ATP6V0B RPS3 ATP5F1E RPL6 CFL1 MT1F RPS9 LAPTM5 RPL37A RPS27 H3F3B LGALS3 HMGB1 AP1S2 HLA-C SLC7A11 KYNU TALDO1 SPI1 RPL13A MT1E ANXA2 RPL29 GSTP1 RPL30 RPL37 ARPC5 DYNLL1 UBA52 GAPDH PID1 EIF1 MT1X ZFAND5 CXCL5 RPL9 HINT1 RPS19 RAC1 CD44 CD14 CKLF RPS13 ARL6IP5 MSN LIMS1 PFDN5 NPC2 RPL18A DDX17 GPX4 ATP6V0E1 RPL11 PSAP GSTO1 PTPRC GNAS RPS12\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 MALAT1 THBS1 SERPINB2 NEAT1 S100A9 TPT1 SOD2 CXCL5 TYROBP S100A6 FCER1G ANXA5 S100A11 CD14 S100A10 SLC7A11 CCL2 SRGN VIM CD300E ACTB VCAN CYP1B1 H3F3A NPC2 C5AR1 TMSB4X CCL4 CCL4L2 CTSL DDX5 SERF2 H3F3B FUCA1 APLP2 CAPZA2 GPX4 CFL1 ZEB2 SERP1 GAPDH SLC43A2 OLR1 LGALS3 DMXL2 ACTR3 CALR HNRNPA2B1 CXCL8 RPL28 YWHAB LCP1 ARPC2 PKM TLN1 ATP6V0E1 CD44 ANXA2 ARHGAP18 IL1B ATP13A3 NCOA4 RAC1 YBX1 BRI3 SKIL ARPC5 REL EIF1 HLA-B C15ORF48 DDX17 TMBIM6 KYNU AIF1 ACTR2 SPI1 MARCKSL1 TLR2 TALDO1 SQSTM1 CYBA JUND MAFB NINJ1 SDCBP UPP1 PSMA7 PSAP LAPTM5 SMAP2 TAX1BP1 CTSZ GRB2 RAP1B LIMS1 GNG5 LRRFIP1 ASAP1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 MALAT1 LYZ TPT1 S100A9 IL1B RPLP1 RPS12 CYP1B1 RPS3A RPL13 RPL10 S100A11 MT2A RPS14 FCER1G RPL28 TMSB4X RPL30 NEAT1 RPS23 CXCL8 RPS27 RPL13A C15ORF48 S100A6 ACTB CYBA RPL11 TYROBP RPS19 RPS15A RPS3 RPS13 RPL18A S100A10 H3F3A RPL39 VIM SERF2 HLA-B RPL5 TALDO1 RPL23 RPL37 RPS6 RPL9 ANXA5 RPL3 RPS20 RPS24 CD14 RPS15 RPS9 MMP9 NACA UBA52 RPL24 RPL36 PID1 PTPRC LCP1 CALM1 ARPC2 RPL6 EIF1 RPL22 ARPC5 H3F3B COTL1 RPL37A CCNI MT1X SRGN RPL23A KYNU RPL14 NPC2 RPL29 METTL9 RPL31 HSP90AA1 RPL38 PTMA RPS7 RPS21 HLA-C ATP5F1E SARAF MARCKS RPSA RPS29 CD44 RPL27 RPL36AL LGALS3 TYMP CKLF ACTR3 SRRM2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 MALAT1 CXCL5 MT2A CCL2 VIM S100A6 GBP1 TPT1 ACTB S100A9 S100A11 FCER1G STAT1 ANXA5 TYROBP S100A4 C15ORF48 SOD2 GAPDH LYZ NEAT1 EIF1 TNFAIP2 CYBA S100A10 CTSZ MT1X IDO1 HLA-B SRGN PDE4DIP SERF2 PARP14 VCAN TYMP ATP5F1E HNRNPA2B1 CFL1 EMP3 CD44 PKM CCL4 C1ORF122 MT1H IL1B MARCKS RAC1 TNFAIP8 CXCL8 RPL28 RPLP1 LCP1 RPL10 GBP5 ARPC2 RPS13 TMSB4X PTPRC ANXA2 KYNU HLA-A CD14 PSTPIP2 ACSL1 ACTR3 DNAJA1 MAFB ANXA1 RPS20 LAP3 TPM3 PTMA FYB1 GK BACH1 CYP1B1 RPL13 HLA-C H3F3A RPS14 THBS1 RPS12 YBX1 RPS9 RNF213 APOL6 YWHAZ H3F3B TLN1 RPS27 C3AR1 CXCL1 TNIP1 PID1 YWHAB ANPEP CTSS TXNIP RPL6\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 MALAT1 MT2A NEAT1 S100A9 IL1B TPT1 TYROBP ACTB C15ORF48 SOD2 S100A11 S100A6 STAT1 HLA-B CYP1B1 H3F3A FCER1G CCL2 MT1X ANXA5 ARPC2 LYZ SERF2 CFL1 RPLP1 CYBA RAC1 VIM TMSB4X EIF1 SAMSN1 KYNU CD300E CTSZ CD14 NFKBIA SRGN CTSS CXCL5 PKM PTMA NPC2 DDX5 ACTR3 TXN TLN1 SLC7A11 RPL28 HLA-A HNRNPA2B1 GRB2 EPB41L3 SDCBP PTPRE CTSB PLEKHO1 MT1E NFE2L2 HLA-C HSP90AA1 RPS27 YWHAZ TAX1BP1 PID1 LYN RHOA MT1F C1ORF122 SDC2 FYB1 H3F3B ARPC5 RNF213 NCF1 SKIL CYP27A1 ANXA2 GBP1 GPX4 CSTB ATP5F1E ITM2B PPP1R18 TPM3 RPS9 HNRNPM MARCKS S100A10 FCN1 LAPTM5 TNFAIP6 SPI1 RPL13A ATP6V0E1 PSAP ACTR2 NACA CHCHD2 PEA15\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 FTH1 TPT1 RPL13 RPL10 RPS12 RPLP1 RPS3A RPL30 RPS14 RPS27 CYP1B1 RPS6 RPL13A RPL18A RPS23 RPL28 LYZ RPS19 RPL37 SLC7A11 RPS15A TMSB4X NEAT1 RPS20 RPL23 S100A11 RPL11 RPS13 PTMA S100A9 EIF1 RPL39 RPS15 RPS3 RPL9 RPL36 RPS9 HLA-B RPL37A RPS7 RPL23A RPL5 RPL3 S100A6 RPL14 RPL29 C15ORF48 VIM RPS21 RPL24 RPL22 UBA52 HSP90AA1 RPL6 H3F3A PPIF RPL27 PABPC1 ANXA5 RPS29 VCAN RPSA HSP90AB1 RPL10A SRGN RPL31 PFDN5 RPL36AL TYROBP NACA GAPDH RPL38 EEF1D CD14 CCNI PNRC1 S100A10 ATP5F1E SERF2 RPS24 GPX4 PTPRC ACTB NAP1L1 BZW1 SPI1 TOMM7 PTP4A2 HLA-C BRI3 MPHOSPH8 UBC LMNA IL32 PTPRE COX7C LGALS3 HLA-A SLC25A6\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 CXCL5 SERPINB2 CXCL8 RPS12 TPT1 CCL2 RPL10 RPL13 RPLP1 NEAT1 RPS14 RPL28 RPL13A RPL30 RPL11 RPS27 RPS3A RPS3 HLA-B MMP9 RPS20 RPS23 RPL18A RPL14 RPS15A RPL3 RPL37 RPL39 RPS15 RPS13 VCAN RPS6 TMSB4X RPL6 RPL9 RPS29 RPS19 RPS21 RPSA RPS9 RPL23A PTMA RPL23 RPL37A RPS7 HNRNPA2B1 RPS24 NPC2 CXCL3 UBA52 RPL5 LTB CD44 IL1B MRC1 PTPRC ACTB RPL27 NACA RPL29 RPL36 ITM2B FTH1 TGOLN2 SLC7A11 RPL31 CCL3 STAT1 RPL10A EREG RPL24 GIMAP7 VIM NAP1L1 CALR PTGS2 RPL38 NPM1 RPL22 CXCL1 EIF1 HLA-C TLR2 BTF3 EMP3 LDHB S100A6 PDIA3 IKZF1 CYBA CYP1B1 ZEB2 C5AR1 TMBIM6 ARPC2 APLP2 HLA-E DMXL2 MYL12B\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 FTH1 CYP1B1 TPT1 VIM C15ORF48 RPLP1 NEAT1 ANXA5 KYNU HLA-B SLC7A11 SOD2 CXCL8 PTMA TYROBP TXNRD1 S100A6 CD44 TMSB4X SRGN SMAP2 NAMPT RPL28 TXN HSP90AA1 TALDO1 RPL10 EIF1 RGCC MRPS6 LGALS3 INSIG1 BACH1 S100A11 YBX1 MARCKS RPS27 S100A10 GAPDH HSP90AB1 CHD4 H3F3A PFDN5 ATP5F1E CSTB ARPC5 LYZ PKM CYBA SERF2 ARPC2 RPS14 BID STAT1 RPS9 CYTIP C1ORF122 RPL13 PLEK JUND RPL13A PEA15 DNAJB6 TAGLN2 RBPJ RPS24 FCER1G RPS7 PTPRE RPL36 RAP1B UBA52 PRDX1 ISCU PLEKHO1 APOL6 TNFRSF1B YWHAZ SH3GLB1 RHOA LCP1 HLA-A TGFB1 ACTB DDX5 HSPH1 SDCBP RPS19 S100A4 CPEB4 MBNL1 SPI1 UBE2D3 BPTF TMEM123 SFPQ PTGES3 PAK2 CCNI\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 FTH1 RPLP1 TPT1 CYP1B1 RPL28 RPS12 RPL10 RPS14 RPL13 SRGN C15ORF48 S100A11 SERPINB2 NEAT1 CCL2 EIF1 RPS27 S100A9 RPL30 RPL13A PTMA TMSB4X CXCL8 RPS15A RPS13 RPS24 HLA-E HLA-C HLA-B PTPRC PNRC1 EMP3 RPS7 RPS3A ARPC2 S100A10 RPS19 RPL39 PSMB9 VCAN THBS1 RPL14 RPL36AL LGALS3 ACTB RNF213 ANXA5 UBA52 H3F3A RPL29 VIM RPS15 SERF2 SLC7A11 JARID2 HNRNPA2B1 GAPDH ZFAS1 PFDN5 TYROBP UBB NACA H3F3B MRPS6 GPX4 TRGC2 KTN1 RPS3 CD14 RPS21 TXNIP PPIF BZW1 TPM3 TXN UBE2D3 CCNI RPL38 JUND NAMPT HSP90AB1 DNAJA1 RPL18A MAP3K8 RPL5 RPL11 RPS6 ATP5F1E KIAA1551 N4BP2L2 RPL37A RPS23 RPL9 SEPT7 HLA-A CST7 POLR2L SQSTM1 EIF5\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 MALAT1 CXCL5 S100A6 THBS1 TPT1 VIM NEAT1 S100A10 S100A11 ANXA5 S100A4 CALM1 CD14 ACTB CXCL8 SERF2 SERPINB2 ANXA1 PTMA TYROBP FCER1G ARPC5 EIF1 HLA-B NAMPT TMSB4X CYBA MRPS6 RPL28 RAC1 GAPDH H3F3A PKM RPLP1 RPS24 RPS27 TALDO1 KYNU ANXA2 SPI1 H3F3B EMP3 PRDX1 YBX1 SRGN UBA52 ATP5F1E TYMP RPS15 ATP13A3 RPL6 CFL1 SLC7A11 PFDN5 SH3KBP1 RPL10 TXN GNAI2 CYP1B1 IL1B PID1 CARD16 TMBIM6 ACTR2 GPX4 ATP6V0E1 LDHA ATP6V0B SDCBP EREG VCAN RPL13 DEK TPM3 ANPEP HMGA1 PPP1R14B MARCKSL1 YWHAZ CD300E HNRNPA2B1 SKP1 CD44 DDX5 LIMS1 RPS7 LRRFIP1 HINT1 HLA-C UBC RPS19 MGST1 ARPC2 HNRNPU HIF1A PTPRE RTN4 RPL37 HLA-A\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 CXCL8 FTH1 IL1B TPT1 EIF1 HLA-DRA CCL2 RPLP1 S100A11 C15ORF48 VIM RPS3A SERPINB2 H3F3B RPL28 HLA-A RPL11 SRGN MIR3945HG ANKRD22 GBP5 HLA-B RPS12 HLA-C CD14 CTSS IDO1 TMBIM6 RPS27 SLC3A2 UPP1 NFKBIA GBP1 HSP90AA1 GAPDH EMP3 RPS14 SOD2 RPS19 CD74 RPL13 LYZ GPX4 ANXA5 PLAUR RPL6 GNG5 TXN TYROBP CD53 RPL10 ATP6V0B MMP9 EIF5 RPS3 S100A6 RPS23 CD44 LAPTM5 TGFB1 SLC25A37 RALA PTMA ZFAS1 WARS CYP1B1 UBE2D3 UBA52 RPL29 UBB H3F3A RPS13 UBC LACTB S100A9 RPL9 CD69 PNRC1 SLC2A3 TYMP S100A10 NAMPT CYBA PARP14 STAT1 PLEK RPS24 DEK TMSB4X KYNU RPS15A HLA-E NFE2L2 ISG15 RBPJ RPL23A PSMA7 PRELID1 RPS6\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 MALAT1 TMSB4X ACTB HLA-B TYROBP S100A6 VIM S100A11 RPLP1 TPT1 S100A4 RPL13 PTMA RPL28 RPS14 RPL10 S100A10 IL32 RPS12 IL1B ANXA5 FCER1G LYZ H3F3A RPS27 SRGN RPS3A BIRC3 CXCL5 RPL29 ANXA1 HLA-A EIF1 RPL30 RPL11 RPS23 NEAT1 RPS6 TPM3 RPL5 PSMA7 PFDN5 RPL23A SERF2 RPL13A PRDX1 PKM RPS15 RPS7 RPS15A RPS9 HSP90AB1 CALM1 CCL2 HLA-DRA CD74 LTB RPL18A PLEK ANXA2 RPS3 TMEM50A RPL3 YWHAB GAPDH RPS20 RPL14 RPS24 RPS19 YBX1 TYMP PTPRE CD44 ARPC2 RPL9 UBC C15ORF48 HLA-C CTSZ ATP5F1E RPL23 NDUFV2 PTPRC HSP90AA1 ATP6V0B STAT1 PNRC1 HNRNPA2B1 BRI3 COX5B COX7C RPSA LIMS1 CFL1 BID NPM1 H3F3B NFKBIA ACTR3\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 FTH1 TPT1 RPLP1 CXCL8 CYP1B1 MT2A RPL10 NEAT1 RPL13 IL1B S100A11 RPS12 TYROBP RPL30 LYZ TMSB4X CXCL5 EREG RPS27 RPL28 RPS19 ANXA5 RPS6 VIM FCER1G RPL11 HLA-B RPL13A S100A9 RPS14 RPS15A SERF2 S100A6 RPS3 RPS23 C15ORF48 RPL5 ACTB RPS15 PKM RPS3A PTMA S100A10 RPS7 RPS13 SLC7A11 CALM1 RPL39 RPS9 RPL9 MMP9 ARPC5 H3F3A CD14 RPL18A RPL23 ARPC2 RPS21 RPL37 THBS1 GAPDH RPL29 HLA-A KYNU RPL3 HLA-C RPL14 RPS24 RPL23A LIMS1 HNRNPA2B1 VCAN UBA52 RPS20 RPL24 NACA MRPS6 PTPRE ANXA1 RPS29 PFDN5 OLR1 ATP5F1E PTPRC GIMAP7 CD44 SDC2 RPSA SRGN STAT1 PID1 GNG5 PDIA3 CYBA UBC RPL37A RPL31 RPL6 ACTR3\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 S100A9 MALAT1 LYZ S100A11 VCAN S100A6 ACTB TPT1 FCER1G TYROBP ANXA5 TMSB4X S100A10 IL1B H3F3A CD14 NEAT1 CYBA C15ORF48 SRGN GAPDH HLA-B CYP1B1 SERF2 ARPC5 HLA-A STAT1 CXCL5 NPC2 VIM MARCKSL1 PID1 SDCBP BRI3 H3F3B SPI1 NFKBIA PTPRC EIF1 LCP1 FUCA1 CFL1 COTL1 ACTR2 CD44 VMP1 SOD2 MMP9 FCGRT RPL28 CDC42 PKM PTPRE ARPC2 RHOA ALOX5AP CTSS CTSZ LAPTM5 PFDN5 FCN1 HLA-E JUND TYMP CALM1 RPLP1 ORAI2 GRB2 PNRC1 ARHGDIB CYP27A1 ATP6V0B ARL6IP5 IQGAP1 APLP2 PTPN12 ENG HLA-C GLRX CXCL8 EFHD2 DDX5 DYNLL1 RPS9 CLEC7A NCF1 RPS27 SQSTM1 ATP6V0E1 C1ORF122 RPL36 SMIM25 YWHAB PDIA3 HSP90AA1 CYTIP LIMS1 TALDO1 UBB\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 MALAT1 MT2A S100A6 NEAT1 S100A9 EREG ACTB SRGN VIM TPT1 CXCL8 LYZ CXCL3 S100A11 TYROBP TMSB4X MMP9 FCER1G HSP90B1 S100A10 H3F3A IL1B PTMA ANXA5 HLA-B CALM1 S100A4 EIF1 SOD2 GAPDH RPL28 STAT1 NPC2 MAFB CTSZ SLC7A11 EMP3 SERF2 HSPA5 CD14 PID1 NFXL1 ARPC2 RPL10 PKM PFDN5 MT1X CD44 FN1 RPLP1 MT1F TYMP ANPEP ATP5F1E MRPS6 VCAN CEP170 LIMS1 RPL23 LAPTM5 CALR PSAP C15ORF48 NFKBIA MARCKSL1 ATP6V0B RPS9 PPIB YBX1 RPL11 H3F3B TGFBI CTSS TPM4 SDF2L1 RPS3A RAC1 ANXA1 RPS19 GBP1 ACTR3 TPM3 CFL1 FUCA1 YWHAZ HLA-A THBS1 FPR3 INSIG1 ATP6V0E1 UBA52 PDIA3 PNRC1 TALDO1 TMBIM6 CKLF APLP2 RPS27 SUMO2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 FTH1 TMSB4X TPT1 RPLP1 CXCL5 S100A6 RPS27 RPL13 RPS12 ACTB RPL10 RPS23 RPL37 MT2A RPS14 PTMA RPL28 H3F3A RPL11 RPS3A LAPTM5 NEAT1 RPS15 S100A11 RPL18A HLA-B RPL9 S100A10 RPS15A HLA-A RPL30 ATP5F1E CALM1 VIM SERF2 RPL37A SOD2 NACA TYROBP MT1X ARPC2 HNRNPA2B1 RPS7 RPS29 RPS19 RPS21 RPS6 RPL38 RPS3 RPL10A PFDN5 SLC7A11 RPL23A RPL3 RPL27 GAPDH PID1 RPSA RPL13A RPL24 PKM PPP2R5C H3F3B RPL14 RPL6 HSP90AA1 RPL23 SQSTM1 MBNL1 ATP13A3 RPL39 CTSZ SON UBB RPL29 RPS13 EMP3 APLP2 SARAF RPL22 RPS20 MRPS6 RPL36 RPL5 RPS9 TOMM7 ANPEP SEPT7 HNRNPU RPS24 ANXA5 PTPRC GBP2 KYNU FPR3 GNAI2 HMGB1 EIF1 DDX5\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 MALAT1 RPL10 RPS12 TPT1 RPLP1 RPL13 RPL28 RPS23 RPS14 TMSB4X RPL30 RPL3 RPS6 RPS27 RPL11 RPS15A RPL14 RPS3 RPL13A RPL18A RPS3A IL32 RPS19 ACTB S100A11 RPS13 LYZ RPS21 RPS24 RPL29 RPL23A RPS9 RPL37 TYROBP RPL24 S100A9 RPL6 RPL9 HLA-B RPS15 RPL39 RPS7 RPL5 UBA52 RPSA PTMA RPL37A IL7R VIM S100A6 RPL36 C15ORF48 HINT1 RPS20 NACA GBP5 S100A4 RPL23 RPL38 S100A10 SERF2 RPL27 CYP1B1 H3F3A RPL22 RPS29 RPL10A ARPC5 LTB OLR1 ATP5F1E PTPRC CYBA AC020656.1 YBX1 HSP90AA1 RPL4 SET RPL36AL PKM TOMM7 PFDN5 ANXA5 SDC2 EIF1 CD44 ATP5MG MMP9 LDHA LCP1 OST4 HLA-A DYNLL1 GAPDH DDX5 ANPEP EDF1 TRIR ARPC2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 MALAT1 TPT1 TXN SRGN VIM C15ORF48 CXCL8 TXNIP S100A11 S100A6 HLA-B RPLP1 GBP1 EIF1 RPL28 CYBA IL1B PLEK RPS9 RPL13 TYROBP RPS12 CCL2 RPS19 CXCL9 H3F3A VCAN S100A10 HLA-A GBP5 S100A9 ANXA5 CD14 ZFAS1 RPS3A NEAT1 TYMP UBA52 SDCBP PNRC1 RPS27 HSP90AA1 HLA-C RPL10 GBP4 TMSB4X PPIF SERF2 RPS24 RPL9 WARS SOD2 CSF2RB ARPC2 PFDN5 LYZ ANXA1 H3F3B RNF213 LGALS3 RALA PARP14 CD44 HLA-E CCNI JUND ATF4 RPS13 RPL11 RPL22 APOL6 CYP1B1 RGCC PKM GNG5 HSP90AB1 S100A4 RHOA RPS29 RPS6 NAMPT ACTB HINT1 SLC7A11 PLSCR1 RPL37 SLC3A2 RPL18A SMIM25 TNFRSF1A FCER1G PSAP SARAF RPL30 CDKN1A GPX4 RPL38 RPS3 RPS14\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 FTH1 RPLP1 CXCL8 TPT1 C15ORF48 TMSB4X RPS12 CYP1B1 RPL10 LGALS3 RPS14 S100A11 S100A6 NEAT1 RPL30 RPS27 S100A9 HLA-B RPL28 H3F3B THBS1 RPL11 RPS20 SRGN RPS23 PTMA ATP5F1E CYBA RPS19 NFKBIA VIM RPL13 PTPRC RPS3 RPS24 RPS15A RPS15 RPL14 HLA-A TYROBP HLA-C EIF1 JUND SLC7A11 IL7R H3F3A ARPC2 PTPRE RPS9 NACA SON PSAP EMP3 RPL37A RPL37 ATP6V0B RPS21 TALDO1 RPS3A UBB S100A10 PNRC1 SERF2 RNF213 TXN MARCKSL1 DDX5 PARP14 CTSB COX7C SRRM2 PFDN5 UBA52 RPL29 GBP1 ARRB2 PSME1 S100A4 RPS29 ATP5MG ARPC5 WARS RPS13 RPL27 ACTB RPL6 ANXA5 RPS7 RAC1 MYL12A TYMP FAM107B SQSTM1 DYNLT1 PRF1 DDX17 YY1 SEPT7 IL1B\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 MALAT1 TPT1 CXCL5 RPS12 RPL13 RPLP1 TMSB4X RPL10 VIM RPS27 RPS14 CYP1B1 S100A6 SERPINB2 RPL13A RPL28 IL7R THBS1 RPS23 RPS3 RPL37A RPS19 RPS3A ACTB S100A9 RPS6 RPS9 RPL9 RPL3 RPS20 CCL2 UBA52 RPL23A RPS7 RPL30 RPL27 RPS15A RPS13 RPL11 RPL18A CFL1 RPS24 RPL39 RPSA RPS15 CD44 FUCA1 S100A4 CALM1 PTMA HLA-B NEAT1 ANXA5 RPL5 RPL22 H3F3A TYROBP RPL24 RPL38 MARCKS RPL29 RPL6 SOD2 ATP5F1E STAT1 IL32 HNRNPA2B1 FCER1G RPS29 PDE4DIP CTSB GAPDH ARPC2 YWHAB LTB YWHAZ PTPRC SRGN HSP90AA1 S100A11 RPL31 PFDN5 EIF1 TPM3 LCP1 ANXA2 SON CXCL8 LYZ RPL23 BRI3 ITM2B ACTR3 RPL37 MYL12A MAFB SERF2 SDCBP DYNLL1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 FTH1 TPT1 TMSB4X NEAT1 C15ORF48 TYROBP S100A11 HLA-DRA ACTB CD74 H3F3A ANXA5 SERF2 CXCL8 PTMA HLA-B S100A6 PRDX1 LYZ SRGN TXN FCER1G RPLP1 RPL10 HLA-DPA1 HLA-DQB1 NCF1 PNRC1 CYBA EIF1 HLA-DRB1 RPS19 GBP1 UBA52 ATP5F1E RPS9 LGALS3 CST3 RPS27 EMP3 RPS23 HSPA5 RPL30 PFDN5 CALR ARL6IP5 STAT1 BID ZFP36L1 ARPC5 ITGB2 DEK RPS24 HLA-C HSP90B1 ARPC2 TFEC TALDO1 IL1B SLAMF7 YWHAZ RPL18A RPL29 CCNI PLEKHO1 LCP1 HSP90AA1 VIM PLA2G7 TNFAIP8 RPS20 RAC1 TPM3 SLC43A2 PRELID1 RPS14 CD44 KYNU RPL13A RPL28 SMIM25 RPL6 WARS CHCHD2 MBD2 CFL1 ATP6V0E1 RPS12 DDX5 CYP1B1 NPC2 TGFB1 PTPRE GNG5 CTSS NFE2L2 HLA-A CD84 TMEM176B\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 HLA-DRA CXCL8 NEAT1 MMP9 HLA-DRB1 CXCL5 INHBA CYP1B1 CD74 HSP90B1 HLA-B SLC7A11 HSPA5 EREG SLC11A1 HLA-A LYZ SERPINB2 PDIA3 HLA-DPA1 CALR IL3RA CYBA PDIA6 CXCL3 ITGAX HLA-C STAT1 DDX5 FCER1G HLA-DQB1 ZFYVE16 SRGN CANX HYOU1 DNAJC3 PSAP NCOR1 MRC1 HLA-DQA1 GPAT3 PPIB CTSS ARHGAP10 FAM133B ZNF430 CEP350 ANKRD11 KYNU SLC3A2 CKLF CD44 HLA-E TMBIM6 TLK1 ASAP1 PTPRE MIA3 AKAP13 SSR3 CHST11 TRAM1 CCL24 AKIRIN2 SETX ATP1B3 SEC11A ANPEP REL HIF1A ACTR2 OS9 BCAP31 CD53 ATP6AP2 KDM5A MRPS6 CTSL USP47 TGOLN2 PARP14 SDF2L1 LUC7L3 FAR1 EDEM3 STT3B KIAA1551 JARID2 NUMB ZNF26 FUS CBL SDF2 ARHGAP26 ENG ENTPD4 VMP1 CCDC47 CXCL1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 CYP1B1 MALAT1 TPT1 RPLP1 TXNRD1 SLC7A11 VCAN PPIF EIF1 S100A11 RPL28 SRGN TYROBP RPS12 ANXA5 RPL30 S100A10 RPL18A CYBA TXN UBA52 LGALS3 RPS27 CDK5RAP2 HSP90B1 CYP27A1 RPS20 PRDX1 PNRC1 RPS15 PTMA YBX1 RPS14 HSP90AA1 DDX5 SERF2 RPL10 RPL9 ARPC2 ACTB SLC3A2 ZFAS1 CCNI RPL13 RPL11 HLA-B GLS RPS9 ATP5F1E LYZ RPL13A PLAUR HSPA5 RPL36 RPS13 RPS19 RPS24 CALR C15ORF48 JUND KYNU H3F3B INSIG1 RPS7 ATP6V0B TMEM123 RPL4 ASPH TNPO1 SERPINB2 H3F3A RGCC CD44 CD164 PFDN5 IL1RN CTSB EIF5 RPL39 S100A9 PDIA3 PABPC1 SET NAMPT PRRC2C ADIPOR1 CSNK1A1 DDX3Y HSP90AB1 POLR2L IQGAP1 HIPK2 HNRNPA2B1 SLC2A3 VASP CDV3 ADGRE2 HBEGF HLA-E\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 S100A9 MALAT1 MT2A CXCL5 CXCL8 CXCL1 IL1B CXCL3 HLA-DRA ACTB LYZ TPT1 FCER1G SRGN TYROBP NEAT1 S100A11 HLA-B S100A10 CD14 EREG MAFB ANXA5 FN1 HLA-C GLRX S100A6 MMP9 CD74 VIM CYBA H3F3A HLA-DRB1 TMSB4X GBP1 NCF1 ARPC2 MT1X GAPDH SDC2 SLC39A8 MXD1 MT1M HLA-A NAMPT CFL1 MT1F C15ORF48 RPL28 C5AR1 LCP1 H3F3B MYL12A LAPTM5 PID1 FCN1 NPC2 HLA-DPA1 MT1E NFKBIA EMP3 SLC7A11 CTSL SERF2 ATP6V0B HSP90B1 PTPRC AP1S2 CALR ITM2B TLN1 CXCL2 MYL12B RPL10 RPLP1 HLA-DQB1 SOD2 DOCK10 UBA52 LRRK2 ATP5F1E PLAUR ANPEP RPS20 H2AFY YWHAB CAP1 PKM RNF149 CTSS SERPINA1 ARHGAP18 MRPS6 ACTR2 ACTR3 EIF1 TYMP CTSZ ARPC5\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 FTH1 TPT1 RPLP1 RPS12 RPL13 CYP1B1 RPS19 RPS27 RPL10 RPL28 RPS3A RPS14 RPL13A SLC7A11 RPS13 RPS23 RPS20 RPL9 RPS6 RPL29 RPL30 CXCL8 RPS24 RPS15 RPL18A RPS3 RPS21 RPS15A TMSB4X RPL37 TXN RPL11 RPL37A C15ORF48 PNRC1 RPL3 RPS7 HLA-B RPL27 STAT1 HLA-A EIF1 RPL6 RPL23A PTMA RPL23 RPL36 S100A11 RPL14 RPL39 RPL31 LTB NACA GPX4 HLA-C RPS9 UBA52 RPL24 VIM RPS29 RPL5 PTPRC SRGN RPL10A HSP90AA1 CYBA ZFAS1 RPL4 SARAF ATP5F1E SERF2 RPSA ANXA5 HINT1 NFKBIA PFDN5 HIF1A TYROBP CD3D YBX1 CSF2RA HNRNPA2B1 KTN1 NDUFA2 NEAT1 PLEKHO1 TGFB1 ITM2B TOMM7 EMP3 TMEM123 RPL38 NAMPT GBP4 GBP5 FNDC3A JAK1 SFPQ ARPC2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 FTH1 TMSB4X ACTB S100A6 MT2A PTMA VIM TYROBP HLA-B FCER1G S100A4 HLA-DPA1 S100A10 HLA-DRB1 RPL10 S100A11 ANXA5 HLA-DRA HLA-C ATP5F1E C15ORF48 RPLP1 CD74 HSP90AB1 MT1H GPX4 RPS12 TPT1 C1ORF122 RPS9 LGALS3 UBA52 PRDX1 SRGN CFL1 RPS20 MT1X CYP1B1 SERF2 RPL13 ANXA2 RPS24 RPS6 RPL11 RPS19 ARPC2 EIF1 CYBA TYMP UBC HSP90AA1 YBX1 CALR NACA RPS7 RPS3A RPL28 RPL18A CTSZ AIF1 TXN PKM RPL13A RPS27 RPL3 RPL39 HLA-A RPL38 DYNLL1 RPL10A PFDN5 ARHGDIB LYZ ACTR3 TPM3 RPS29 RPS23 GAPDH CTSS RPS15 HLA-DQA1 LCP1 GBP1 H3F3A TXNIP RPL30 RPL5 RPS14 COTL1 RPL37 RPL6 RPS15A ANXA1 HLA-DQB1 GSTP1 STAT1 IL3RA PTPRE PSMA7\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 CXCL8 IL1B MALAT1 CXCL5 S100A9 NEAT1 FCER1G VIM CYP1B1 S100A11 ANXA5 CCL3 TPT1 TYROBP CXCL3 LYZ IL1A CSTB MT2A SERPINB2 SRGN SLC7A11 HLA-B ACTB IL1RN ARPC2 EIF1 C15ORF48 SERF2 HSP90AA1 MMP9 SLC11A1 HLA-DRA INHBA TXNIP N4BP1 TALDO1 MRPS6 RPL10 ARPC5 ATP13A3 SOD2 PKM PLA2G7 HBEGF CYBA CD44 CTSL NFE2L2 GLRX CFLAR HIF1A SDC2 CXCL1 PTPRE EREG PFDN5 ATP6V0B TMSB4X UPP1 ALOX5AP MCEMP1 ANXA2 TPM3 PTPN12 CCL4 CD53 FBP1 ITGAX GNG5 ATP5F1E OST4 MRC1 S100A10 YWHAZ CCL3L1 RAPGEF1 PTMA GAPDH CALM1 PRDX1 PSMB3 SERPINA1 ACTR3 AP2S1 RBPJ LGALS3 UBA52 PLAUR ITM2B SPI1 COX5B H3F3B CTSB OLR1 BACH1 TXN PSMA7 HLA-E\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 FTH1 TMSB4X ACTB S100A11 S100A4 TYROBP PTMA C15ORF48 LGALS3 RPL10 HLA-DRB1 HLA-DRA HLA-B VIM TPT1 S100A6 RPS19 CD74 PRDX1 FCER1G RPLP1 CSTB HSP90AB1 EIF1 HLA-DPA1 RPS9 ARPC5 CYBA H3F3A RPL28 ANXA5 PLEK TYMP YBX1 GBP5 RPL3 ARPC2 RPS14 HSP90AA1 RPL30 NFKBIA UBA52 GBP1 RPS20 SOD2 RPL13 LYSMD2 RPS12 GNG5 PFDN5 RPS27 PSMB9 SERF2 CFL1 ATP5F1E SPI1 LCP1 CTSS PRELID1 RPL6 HLA-C RPL23 TXN PLEKHO1 CD81 GPX4 FBP1 NDUFA4 RPS23 RPL18A RPL39 RPL11 CALR CYP1B1 RPS7 DNAJA1 FCER2 H3F3B RPS24 JUND PTPRE RPS29 IL1B IL1RN RPS15 PSAP PKM LYN AKAP9 LINC02345 RPS6 VAMP8 TPM3 PSMA7 ATP6V0B PABPC1 COTL1 ACTR3 PDIA3\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 FTH1 TPT1 RPLP1 RPS12 RPS14 RPL13 RPS15A RPS3A PNRC1 RPL10 RPS27 TMSB4X RPL11 RPS13 RPL39 EIF1 RPS3 RPL30 RPS19 HLA-B PTMA SRGN SLC7A11 CYP1B1 C15ORF48 RPL18A RPS15 RPS23 RPL13A RPL9 RPL28 RPL14 CXCL8 RPS9 RPL5 RPL23 RPS24 RPS6 RPL37A VCAN RPL37 EMP3 S100A11 RPL24 RPS7 ZFAS1 NACA UBA52 HLA-A H3F3B RPS29 HLA-DRA SLC25A37 VIM RPL22 NEAT1 RPL29 RPL3 H3F3A RPL38 PPIF S100A10 PFDN5 CD14 RPS21 HLA-E RPSA TYROBP NAMPT PABPC1 PTGES3 S100A6 TOP1 RPL6 CD3D RPL36 UPP1 CDV3 LAPTM5 RPL31 LTB CTSL CD3E DDX5 HSP90AA1 RPS20 XAF1 TOMM7 OSM LGALS3 NAP1L1 TRIB3 MAP3K2 MAFB TXN PTPRC HLA-C RPL27 IL7R\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 MALAT1 CCL2 TPT1 RPS12 RPL10 RPLP1 RPL13 NEAT1 VIM RPS14 S100A11 RPL28 RPS3A S100A6 RPS24 RPS15A RPL30 RPS3 FCER1G RPS27 CYP1B1 RPL11 RPL13A RPS23 RPL39 RPS13 RPL18A RPS19 LYZ TMSB4X STAT1 RPL3 SERF2 EIF1 HLA-B C15ORF48 PTMA RPS15 IL1B ACTB RPS6 H3F3A RPL14 RPL29 NACA RPL10A UBA52 RPS7 S100A10 HLA-DRA RPL9 RPS9 RPL36 RPL5 RPL37 HINT1 ATP5F1E RPL24 TYMP RPS29 TYROBP ARPC2 RPL6 CTSB LGALS3 S100A9 HSP90AA1 HLA-C ATP6V0B RPL22 CYBA BTF3 ANXA5 RPS20 RPL27 SDCBP CD74 RPS27L HLA-DRB1 UBC RPS21 RPL36AL ETS2 RPL37A S100A4 RNF213 RGS10 CSTB CD14 MRPS6 RPL23A SLC7A11 BRI3 ARPC5 PFDN5 SOD2 RPL23 RGCC CCL3\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTH1 MALAT1 S100A9 FCER1G ACTB CYP1B1 NEAT1 S100A11 VIM TYROBP TMSB4X HLA-B LYZ H3F3A TPT1 STAT1 H3F3B CALM1 MRC1 MMP9 ANXA5 SRGN SERF2 CSTB CYBA S100A6 ARHGAP18 HSP90B1 RPL10 NPC2 DYNLL1 ARPC2 C1ORF122 CALR TPM3 RAC1 HLA-DRA HLA-DRB1 CXCL8 C15ORF48 CTSS CD44 SLC7A11 SLC11A1 PTPRE GPX4 ATP6V0B FPR3 FBP1 ANXA2 CFL1 IL1B DAB2 S100A10 AIF1 GSN EMP3 ATP6V1G1 HLA-E CD74 GSTO1 HLA-A CTSB LCP1 SGK3 AP1S2 ACTR3 CSF1R CTSL SLC43A2 TNFRSF1B RGCC GAPDH TXN RNF213 PDIA3 LILRB2 SDCBP TYMP SOD2 VMP1 ACTR2 ZEB2 PTMA RPL28 IQGAP1 PPIB BRI3 PLXDC2 PFDN5 ITGB2 LIMS1 PDE4DIP YWHAZ SDC2 PID1 ATP13A3 ITGB1 TLN1 BID\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TMSB4X RPS27 RPS12 RPL28 RPL13 RPL10 HLA-B RPS19 TPT1 RPL13A IL7R RPL30 RPS3A RPS14 RPS3 RPL14 HLA-A RPL11 RPL39 RPS15 RPS21 PTPRC RPL37 RPL9 RPS15A RPS6 UBA52 CST7 CXCR4 RPL23A RPS20 RPL3 CD2 RPL6 SEPT7 GAPDH RPL24 HLA-C RPS24 PNISR TNFAIP3 CYBA ANXA1 RPL36 UBC DDX5 RPL18A RPL31 RPL10A RPSA EML4 VIM RPS9 RPS29 FYN RPL37A PRPF4B IL32 RPL38 CLDND1 MBNL1 HSP90AA1 RPS7 GBP5 RBM39 GSTP1 NUB1 COPS9 ATP5MG ARPC5 FOXP1 RABAC1 EIF1 ARPC2 RNASEH2B PFDN5 TOMM7 STK17A RPS23 RPL22 PTMA EIF3G SERF2 SOD1 IQGAP2 HINT1 NACA SLFN5 GNAS MSI2 CD81 NDUFV2 EIF2S2 ATP6V1G1 S100A6 CEP170 PRPF40A DDX17\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 FTH1 ACTB FABP5 NEAT1 IL1RN TXNRD1 HLA-B TPT1 TYROBP LCP1 S100A11 LGALS3 SRGN TMSB4X H3F3A FCER1G RPL10 ANXA1 TXN ANXA5 CYP1B1 MFSD12 PFDN5 H3F3B PTPRE GNG5 S100A6 HLA-C CCL24 RPLP1 PTMA RPS19 SERF2 RGCC GAPDH TLN1 RPS27 ARID5B FLNA RPL6 CFL1 GCLC PLEKHO1 CCL22 GSN HOPX ATF3 NPC2 SMIM25 LYZ SDC2 SLC43A2 S100A4 ATP5F1E TALDO1 RPS14 EMP3 LIMS1 SLC7A11 GLIPR1 GPX4 JUND HSP90AB1 ARPC2 GPAT3 PLA2G7 INSIG1 TPM3 RPL36AL TXNIP DDX5 RPL30 CALM1 CD9 ITGB2 CD53 RPL37 LSP1 AIF1 ITGB1 RPL28 PKM ARPC5 HLA-E RAP1B LAPTM5 CALR RPS6KA1 GSTO1 RPL24 CYBA RPS3A ATP6AP2 RPL39 BCAP31 C15ORF48 UBC TGFB1 EIF1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 FTH1 TPT1 GNLY LYZ S100A9 CYP1B1 TMSB4X RPL28 PTMA MT2A MMP9 RPL10 LCP1 RPLP1 TYROBP ACTB MT1H RPS14 ZFP36L1 RPS3 MT1X RPL13 RPS3A RPL23 VIM RPS15A ANXA5 RPS19 S100A11 NEAT1 HLA-B RPS24 RPL30 FBP1 HSP90AB1 H3F3B RPL37 RPS27 RPL18A YBX1 RPS15 MRC1 PTPRE RPL9 RPL14 SLC7A11 RPS23 RPL39 DDX5 RPL13A HSP90AA1 GSN HLA-A RPS13 LRRFIP1 RPS7 INSIG1 PKM CTSS MT1E SERF2 RPS12 ZEB2 S100A10 RPS9 EIF1 CXCL5 SLC44A1 COTL1 RPL3 PABPC1 RPL36 GNAS PID1 H3F3A RPL29 TYMP RPL11 RPL5 GIMAP7 ATP5F1E SERBP1 GPX4 UBA52 SRRM2 FCER1G PAK2 RPS20 TLN1 VCP ARHGDIB NKTR HNRNPA3 NKG7 RPL6 CYBA TPR PTPRC HSP90B1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 FTH1 CXCL5 CXCL8 S100A11 SERPINB2 S100A6 TYROBP CCL2 S100A10 ACTB CD14 CALM1 FCER1G SRGN VIM CTSL TMSB4X SERF2 TPT1 PRDX1 H3F3A HLA-B ANXA2 MRPS6 LAPTM5 EREG DYNLL1 ANXA5 GAPDH SDC2 NEAT1 EMP3 ARPC2 ANXA1 H3F3B CD300E AP1S2 ATP5F1E ATP6V0B C15ORF48 CTSZ MMP9 LMNA TYMP PKM RPL10 MAFB CFL1 CXCL1 NFKBIA ANPEP HLA-E CALR SQLE TPM3 JARID2 MARCKSL1 PTMA DDX5 C5AR1 PLP2 MYL12B CYBA ATP13A3 COTL1 PID1 RPLP1 SPI1 EIF1 NPC2 INSIG1 TALDO1 CD44 PFDN5 GRB2 TUBA1C CYP1B1 IL1B BZW1 CD53 HMGB1 IQGAP1 PHLDA1 HNRNPA2B1 PSMD8 TMBIM6 TLN1 MSN PSMA7 CHCHD2 COX7A2 ENG MMP19 OST4 HLA-C COX6A1 UQCRB UBA52 RPL30\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Monocytes" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS14 RPS12 RPL10 GNLY RPL13 RPL30 RPS19 TMSB4X RPS23 TPT1 RPS3 RPS27 RPL11 RPL5 RPS3A HLA-A RPL3 RPL18A IL7R RPL13A RPS15 EIF1 RPL23A RPL29 NACA RPL28 HLA-B RPL37A RPL6 RPS13 RPS6 APOBEC3G HLA-C RPL14 RPS7 EEF1D UBA52 RPL36 RPS24 EMP3 RPS15A ITM2B PTMA RPL9 RPS21 NCL RPL36AL GIMAP7 S100A6 H3F3B CALM1 CST7 S100A4 RPL27 PDE3B NFKBIA ARL4C RPL37 IL32 H3F3A GAPDH RPS20 ALOX5AP RPL39 TYROBP RPL10A RPS4Y1 DDX24 S100A10 EEF2 CD2 HLA-E RPS29 CALR ZBTB7A CLEC2B NCOR1 ARL6IP5 ANP32E KIAA1551 FTH1 SNRPD2 KDM2A RORA FIP1L1 NR3C1 PTPRC KLRC1 RPL4 HIF1A RPL22 PFDN5 NKG7 RPL24 RNF44 GOLGA4 RTKN2 TRAM1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY TMSB4X TPT1 RPL10 RPLP1 RPS14 RPS19 RPS3 HLA-A RPS3A HLA-B RPL28 RPS15A RPS27 RPL30 RPS23 RPS12 RPL14 RPL13 NKG7 HLA-C RPL11 RPL18A CALM1 GZMA RPS13 RPL13A RPL6 RPL5 SRGN GIMAP7 PTMA RPS21 HNRNPU RPS6 RPL23A STK17A PTPRC RPSA RPL37 ACTB ATM RPL39 SEPT7 RPS7 LRRFIP1 EFHD2 ATP5MC2 NACA RPL3 COX6B1 RPL23 NR3C1 HLA-E RPL24 PIK3R1 RPS15 UBA52 RPL37A RPS20 ACTR3 MYCBP2 RPS24 HNRNPA2B1 CAST FAM129A MORF4L1 RAP1B HMGB1 CYBA PNRC1 RPL9 RPL22 TYROBP NEAT1 KLRF1 WASF2 DAZAP2 RPL38 PYHIN1 CDKN1B STXBP3 SYNRG RHOF EEF1D COX7C MRPL22 ATP5F1D PRPF40A IER5 RPS29 ARPC2 PTGDR S100A10 AOAH DEK RPL31 RARRES3 VPS28\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY TXNIP HLA-B NKG7 RPLP1 TMSB4X RPL13 HLA-A HLA-C CYBA RPL11 ARPC2 UBC RPS19 PTPRC RPL10 RPS7 H3F3B RPS15A RPS27 TPT1 PTMA SEPT7 CST7 H3F3A ZEB2 RPS3A CD247 RAP1B PNRC1 RPS12 RPL24 RPS6 RPL37 FGFBP2 RPS15 YWHAZ EMP3 RBM39 RPS23 AKR1C3 RPL30 EVL RPS3 RPL36AL RPL5 RPL27 CLEC2B PYHIN1 RPL29 RPS13 PNISR GTF3C1 S100A6 CD53 SAMD9 NACA BTF3 SP100 RPL6 EIF3A ARL4C RPL28 BZW1 CALM1 CAST HLA-E RPL13A RTN4 HNRNPA2B1 SUMO2 ACTB EIF5 RPS14 S100A4 CFL1 RPS27L OPTN UBA52 RBM17 FERMT3 C1ORF21 SRRM1 CDC42SE2 FCER1G DDX5 TPR RPL37A RAC2 CELF2 VPS4B CX3CR1 FGD3 HSP90AA1 MBP PTP4A2 DDX17 RIPOR2 C1ORF162\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: GNLY MALAT1 TMSB4X RPLP1 PTMA ACTB NKG7 HLA-A RPL10 RPS12 RPS19 HSP90AB1 HLA-B RPL13 RPL28 TPT1 RPL23A CALR RPS3A RPL37 RPS3 RPS15 CTSW RPL13A RPS24 RPS9 RPL6 RPS27 RPS23 RPL3 RPL11 RPL39 RPL10A RPL37A RPS14 RPL30 PPIA GAPDH PPIB RPS7 RPS15A HOPX RPSA RPL29 RPL18A HLA-C RPL9 VIM ARPC2 UBC IL32 SERF2 RPS13 YWHAB RPS6 RPS29 SEPT7 UBA52 RPL14 CYBA CFL1 HNRNPA2B1 ATP5F1E HMGB1 YBX1 RPS20 SRGN UBB PDIA3 GZMM HSP90AA1 PDIA6 COX6B1 IFITM2 RPS21 KLRD1 HSPA5 FCER1G CHCHD2 H3F3B HINT1 OST4 H3F3A MSN RPL22 MYL12B SDF2L1 TNFSF10 ATP5MC2 EFHD2 GZMA EMP3 TUBB FTH1 GNAS RPL24 PSMA7 TLN1 APOBEC3G ISG15\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY TMSB4X HLA-B RPL10 TPT1 HLA-C CCL4 RPS3A IL32 RPS12 RPLP1 JUND NKG7 RPL37A HLA-A RPL28 RPS6 RPL30 RPL6 RPS19 RPL13A STAT1 DDX5 PTMA PTPRC NACA RPS3 JAK1 RPS23 RPS27 NEAT1 GBP5 FTH1 RPL37 RPL5 LYST CREM NFKB1 UBB RPL13 DDX24 PNRC1 RPS24 RPS9 SRGN MSN PYHIN1 SLFN5 HMGB1 RPL14 H3F3B TNFAIP3 RPS13 CCND2 MORF4L1 RPL3 CNOT2 YWHAZ RPL11 PRF1 RPS15 RPS14 FCER1G RAP1B HNRNPU GADD45B UBA52 RPL10A KLRD1 BPTF NFKB2 RPS7 GNAS RBBP6 RPS21 KIAA1551 IKZF2 SON RPL23 RPL27 CHCHD2 UBC NFKBIA SRRM2 GNG2 SRSF7 REL RPL24 PFDN5 RPL29 H3F3A SRSF3 BOD1L1 WAC APOL6 HNRNPA2B1 SLC25A3 RPL18A MYL12B\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY RPLP1 TMSB4X TPT1 RPL10 HLA-B NKG7 RPS24 PTMA RPS27 RPS15A RPL13 S100A4 RPS14 RPS3 RPL14 CST7 RPS7 RPS12 RPL30 RPL13A RPL37 RPS3A CYBA RPL23A GIMAP7 RPL11 TXNIP RPL28 KIAA1551 RPL6 RPS21 RPL37A KLRD1 PTPRC UBC HLA-C HLA-A UBA52 PRELID1 RPS15 NR3C1 ALOX5AP RPS19 SEPT7 HLA-E SRRM2 GAPDH RPL18A RPL3 CALM1 RPS9 RPS23 SET HMGB1 N4BP2L2 NEAT1 APOBEC3G JAK1 CTSW PFDN5 RPL38 FYB1 TPM3 DDX46 GIGYF2 RPL36AL CD247 SP100 RPL39 CXCR4 RPS6 ARID5B AKNA CFDP1 SP140L RPL29 AC245297.3 TYROBP GNAS RPS20 EEF2 NACA LAPTM5 RPL22 GADD45GIP1 GNAI2 ASH1L PAK2 LDHA RPL23 VEZF1 PRPF4B DDX6 RPL24 DDX24 H3F3B CFLAR NCL\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY TMSB4X TPT1 HLA-B RPLP1 NKG7 PTMA RPS3 RPL10 PTPRC H3F3A GIMAP7 HLA-C RPS19 RPL13 RPL37 ACTB ARL4C RPL14 RPL3 ARPC2 CCPG1 CFL1 RPL23A RPS3A RPL5 HINT1 RPL28 RPS24 RPL11 AES JAK1 DOCK8 SERF2 GZMA KLRD1 DDX5 NEAT1 SLFN5 UBC RBM39 HIST1H1D CYBA KANSL1 RPS13 REL CTSW TRIR RPS9 KMT2E RPS14 RPS12 EEF1D IL7R RSRP1 CMC1 RPL30 TLN1 MRPS6 CXCR4 EFR3A SRGN HNRNPU UBE2I RPL13A CCL4 PLAC8 TXNIP RPL18A NCOR1 PDE4D ELOB ZNF507 ABHD17A MXD4 SUN2 FUBP1 EP300 CORO1A EVL MYL12B CAST MSN MBP PYHIN1 PIK3R1 LDHA RSBN1L TYROBP HNRNPD SCAF11 MAX ITGB1 RPL6 LCP1 IARS2 AKNA MYL12A KIAA2026\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X RPLP1 HLA-B RPL10 TPT1 PTMA GNLY RPS3 HLA-A RPS12 RPS14 RPS3A RPL11 RPS9 RPS23 RPS19 PTPRC ACTB RPL13A CST7 RPS27 RPS15 RPS13 HLA-C RPL13 RPS24 IL7R RPL3 RPL28 PNRC1 RPS15A RPL23A RPL18A RPS21 RPS7 S100A6 RPL39 RPL37A EMP3 KLRD1 H3F3A NEAT1 S100A4 HSP90AA1 ARPC2 NKG7 RPL6 RPL29 HLA-E RPL14 CALM1 RPS29 HNRNPA2B1 RPL30 RARRES3 RPL5 RPS6 CYBA RPL24 HMGB1 UBA52 HINT1 CCNI SEPT7 LBH H3F3B KIAA1551 EEF1D DDX5 RPL9 NR3C1 TIGIT NACA IQGAP1 KTN1 GZMM BTN3A2 CDC42SE2 RPS20 XRCC5 YWHAB PNISR RPL27 KMT2A RPL37 SF3B1 GAPDH RPL22 ARL4C UBC STK17A CXCR4 PTPN7 APOBEC3G IFI16 TNFSF14 EML4 LCP2 SRRM2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY TMSB4X HLA-B NKG7 HLA-A RPS23 RPL11 RPLP1 CST7 HLA-C IL32 TPT1 RPS14 RPL10 RPL28 RPS12 HLA-E PRF1 RPL23A RPL29 RPS15A GZMA HOPX HNRNPA2B1 RPL13A CYBA SYNE2 UBC ARL4C TXNIP RPS13 RPL14 MYOM2 MYL12A RPS19 FTH1 N4BP2L2 RPS21 TYROBP UBB PCNX4 ATP5F1E TNFSF10 UBA52 HINT1 EMP3 PTPRC JAK1 FGFBP2 PRRC2C PRMT2 HLA-F EIF1 COMMD6 CDV3 RPS3A RPL13 MSN CDC42 SON PNRC1 MPHOSPH8 SERF2 RPS27 CFL1 RPL6 TAF7 GIMAP7 GBP1 GOLGB1 NEAT1 CD53 HMGB1 SQSTM1 RPL5 CLEC2B HSP90AB1 GBP2 RPL39 DDX5 SRRM1 WASF2 S100A6 HSP90B1 ATP5MPL LUC7L3 RNF213 EEF2 RPL37A RBM39 CDC26 FCER1G RAC2 OST4 PIK3R1 ABCF1 HNRNPF PTMA ZNF428\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPS19 TMSB4X TPT1 RPS27 RPS12 RPLP1 RPS6 RPS3A RPL13 PTMA RPS14 RPL28 GNLY RPS13 RPL3 RPL10 RPS23 RPL5 RPL11 RPL30 RPL6 RPL37 RPS24 KIAA1551 RPS15A RPL23A RPS9 RPL14 RPS3 PTPRC ITM2B HLA-A NKG7 RPL13A UBC RPL36AL HLA-C RPL10A RPL18A RPL39 HLA-B RPL22 PYHIN1 RPS20 HNRNPA2B1 RPL9 GIMAP7 TYROBP RPL4 NACA ETS1 TXNIP RPL36 DDX5 UBA52 RPL37A NEAT1 RPS7 PRDM2 CALM1 CST7 UBB RPS15 YWHAZ IL32 RPSA FYN TCF25 OST4 SERBP1 AK9 STK4 KLRC1 STK38 RPS4Y1 CD48 PRRC2C RPL24 EIF1 CELF2 FGFBP2 EEF1D H3F3A ZNF638 ANKRD11 ARPC2 GOLGA4 RPL31 TRANK1 RPS21 PMEPA1 BCLAF1 SETX RPL38 EIF4A2 PIN4 IDS SH2D2A RASAL3\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY TMSB4X HLA-B IL32 ISG15 RPLP1 PTMA RPS27 RPS12 ISG20 MX1 RPS3 HLA-C RPS19 TPT1 HLA-A RPL11 RARRES3 RPS23 RPL14 RPS6 H3F3B PTPRC RPL30 SAMHD1 RPL37 HINT1 RPL23A RPL13 RPS24 GBP1 RNF213 RPL10 DDX5 STAT1 PARP14 NKG7 SERF2 NACA RPL13A RPL28 RPS3A TNFSF10 MYL12A EIF1 EVL RSAD2 RPS21 GZMA TPM3 HLA-E FCER1G RPS15A RPS14 RPL37A CTSW IKZF3 HMGB1 MSN DNAJC8 ITM2B GBP4 SP100 HERC5 APOBEC3G HNRNPA2B1 FAM133B ALOX5AP DRAP1 RPL10A RPL36AL TXNIP UTRN RPL29 RPL3 PFDN5 ACTB TAX1BP1 PPIB CST7 SLFN5 HNRNPD XRCC5 ATP5F1E RPL27 CTSC SAMD9 ARL6IP5 TOMM7 NCL SAMD9L CALR SMARCA5 CCNI CMC1 PPP1R18 LCP1 GPBP1 EIF2AK2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY TMSB4X TPT1 PTMA IL32 ACTB RPL13 RPL10 RPS3A RPS3 RPS19 RPL30 RPS15A RPS14 RPS12 HLA-B RPLP1 HLA-A RPS27 HSP90AA1 RPL28 HLA-C NKG7 RPS24 RPS15 NCL VIM RPS23 RPL23A RPS21 UBA52 RPL11 RPL18A RPL3 HOPX LTB NACA RPS6 RPL6 PPP1R14B BOD1L1 UBC GIMAP4 HNRNPA2B1 TRIR LCP1 RPL37A APOBEC3G DDX5 RPL38 HSP90AB1 CD2 RPS7 BTN3A2 ARPC2 PNRC1 RPS20 PRRC2C RPL27 RPL13A RPL37 ATRX HUWE1 EIF1 MACF1 GOLGB1 RNF213 RPS29 CHD4 RPL9 STK17B RPL36 GIMAP7 CFL1 PFDN5 BZW1 CTSW FTH1 TYROBP RPL24 SCAF11 FEZ1 LRRFIP1 KMT2E RPL5 GBP2 SERF2 ITM2B RPSA KLRC1 HIF1A PSMA7 POU2F2 MYL12A HLA-E BIRC3 HNRNPA3 SRSF4 ISCU\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY RPLP1 TPT1 TMSB4X RPL10 RPS19 RPS27 RPS15A RPS3 RPS14 RPL13 NEAT1 RPS24 NKG7 RPS3A RPS15 KLRD1 RPS12 PTPRC RPL29 RPL11 RPL6 RPL28 RPL14 HLA-B RPS6 RPL30 RPL23A RPL39 RPL37 RPS23 HNRNPA2B1 RPL18A RPL3 RPL13A RPS7 NACA ARPC2 RPS29 RPL36 HMGB1 MSN RPL5 PRF1 PDE4D EMP3 RPS21 VAMP8 PTMA PNN OGT COL4A3BP UBA52 PTP4A2 SEPT7 IQGAP1 NCL CYBA ARL4C RPL10A HLA-E RPSA TENT4B RPS13 HLA-F H3F3A PRPF4B NUB1 APOBEC3G CST7 PPP2R2A CYTIP EEF2 BTF3 RPL9 PNRC1 XRCC5 BTN3A2 S100A4 GAPDH LSM8 LCOR TGFBR3 PLEK RPL37A CAST NR3C1 TXNIP STK17A RPL24 DTHD1 SON DHX36 RPL36AL GIMAP4 RPS20 MYBL1 GLIPR1 PPIA\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL10 RPS12 RPL13 TMSB4X TPT1 RPS3 RPS19 GNLY RPS3A RPL28 S100A6 RPS23 RPS14 RPS27 HLA-B RPS24 RPL30 RPL11 RPL23A RPL37 HLA-A RPSA RPL18A RPS13 RPL3 GAPDH IL7R RPL14 RPS29 RPS21 RPS15 NACA NKG7 RPL5 RPS7 DDX5 PFDN5 RPL6 RPS15A UBA52 RPL10A VIM RPS20 RPS6 UBC CALM1 CYBA RPL9 H3F3A RPL29 RPL36 RPS9 SEPT7 HMGB1 PPIB RPL39 RPL13A FTH1 PTMA ALOX5AP RPL37A S100A4 ITM2B CFL1 RPL24 APOBEC3G PNN PPP1R14B DDX17 COX7C CAST S100A11 CLDND1 PTPRC HNRNPU ATP5MD ARL4C BTF3 NEAT1 ISCU CD3G MTDH EMP3 SON CST7 PHLDA1 S100A10 CDC42 ATP5F1E ACTB TOMM7 MYL12B RPL22 RPL36AL CD99 H3F3B CKLF EIF1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPLP1 TMSB4X RPS14 RPS27 RPL10 RPL13 HLA-B RPS3 RPS12 RPL13A RPS19 RPL30 RPL28 PTPRC RPS3A RPS23 RPS24 RPS15A RPL23A NKG7 RPS15 HLA-C S100A6 RPL37A RPL3 RPL24 HLA-A RPL14 HINT1 ACTB HNRNPA2B1 NEAT1 GIMAP4 RPS13 CST7 ARPC2 RPS6 RPL18A RPS9 RPS21 GIMAP7 RPL39 IL32 RPL6 RPS7 ITM2B NACA RPL29 EIF1 UBA52 RPL37 RNF213 PTMA DDX5 RPL10A RPL22 PNRC1 MYBL1 RPL5 SRRM2 PRRC2C LBH RPL27 RPS20 CALM1 GBP5 RPL38 PPIB ANXA1 EEF1D HLA-E SYNE2 RORA RPS29 GAPDH HSP90AB1 RPSA IRF2 RPL23 MSN BTF3 STK4 COX7C RAB8B ANP32E EML4 PPP2R5C FTH1 PLEK LRRFIP1 RPL9 MYL12B ATRX NFAT5 SERF2 GBP2 GOLGB1 GBP1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY TPT1 TMSB4X RPLP1 RPL13 RPS14 RPL10 NEAT1 RPS3 RPL30 HLA-B RPS19 RPL11 RPL14 KLRD1 HLA-A RPS12 RPS3A RPL13A CYBA RPL24 ITM2B RPS24 RPL28 GZMA PTMA HLA-C HNRNPU PTPRC KMT2E RPS15A FTH1 HNRNPA2B1 RPS15 DDX5 UBB SERF2 NACA CDC42SE2 HSP90AA1 SLFN12L FAM107B CST7 COX8A CD247 LCK IQGAP2 PRF1 DDX24 PIK3R1 UBC RPL23A MYBL1 RPL5 CEP78 RPL37A HINT1 RPS20 RPL18A TMPO PPM1K ACIN1 SRGN GNG5 RPL36AL RPS7 N4BP2L2 RPL29 RPL3 H3F3A STK4 RPS21 ACTB RPS23 RPL9 UBA52 H3F3B JAK1 CD74 TXNIP RPS27 RPL37 STK17A TUT4 GAPDH CALM1 RPS13 CCL4 ARID4B CCT3 ATRX RPL23 ANKRD11 YWHAZ TERF2IP FLNA NCOR1 DDX17 WDR83OS\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X GNLY ACTB HLA-B HLA-A RPL10 NKG7 TPT1 PTMA GBP5 HLA-C RPLP1 RPS19 GBP1 HLA-E RPS27 TNFSF10 CCL4 MYL12A RPL13 EMP3 GBP4 RPS12 GIMAP7 NFKBIA ARPC2 HINT1 RPL18A GZMA CFL1 RPL23A RPS24 RPL11 PKM RPL30 RPL14 KLRD1 CD74 TNFRSF4 EIF1 EIF5A RPL36AL ARPC5L ATP5F1E PTPRC CORO1A RPS3A JUND UBB NACA EFHD2 RPS15 PRRC2C GAPDH UBA52 CTSW CALM1 PRF1 IRF2 RPS7 RPS15A YWHAB RPS14 RPL6 CST7 XBP1 RAC2 RPL37A RPS23 PSME1 RPS13 RPL13A TYMP SKP1 RPL9 LCP1 COX8A CD53 GSTP1 HSP90AA1 HAPLN3 SNX6 RPL28 HNRNPA2B1 CYBA SUB1 RPL39 PLEK POMP LTB RPS9 UBC H3F3B PPIA RPL3 NEAT1 SOD1 GIMAP4 RPS29\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X RPL10 RPS3 TPT1 HLA-A HLA-B RPL30 GIMAP7 RPS12 RPL13A TXNIP RPS14 RPS27 NKG7 RPS19 RPL13 RPS6 RPLP1 RPL14 RPL6 RPL11 FTH1 RPL5 RPS13 RPL29 RPS3A H3F3A GNLY RPS23 UBA52 PTMA GZMA RPL37 RPL28 HLA-C ARPC2 RPL23A HMGN1 RPS24 RPS15 RPL38 RPL37A RPL3 BIN2 TFDP2 S100A4 CST7 AKAP9 MYL12B SERF2 ATP5F1E RPS7 NEAT1 ARL6IP5 LINC00861 UFC1 RHOA NACA ITGA4 RPSA KLRF1 RPL24 RPL27 PSMA7 ADRM1 DHX29 TOMM7 MRPL20 MPHOSPH8 SYNE1 SEPT7 RPS15A HSP90AA1 RPS20 KIAA1551 RPL23 KLRC1 PRRC2C TTC9C RPL36 RPS21 NCOR1 GIMAP2 CAST KMT2E MYL12A SNRPB RPL22 ARPC5 NDUFS5 MYCBP2 SMARCA5 WIPI2 PTPRC EIF1 KTN1 H3F3B STK38 RAB11A\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY TMSB4X HLA-B TPT1 RPLP1 NKG7 RPL13 RPL37 CCL4 RPS3 RPS19 RPS12 RPL30 PTPRC HLA-A PTMA RPL18A HLA-C RPS3A RPL10 RPS13 PNRC1 RPS15 RPS24 RPS27 RPL11 RPS15A RPL29 RPL3 RPL28 ARL4C RPS14 RPS23 RPL23A RPS9 UBA52 SET RPL23 HNRNPA2B1 EIF1 RPS7 PRF1 RPL13A RPL9 RPL27 RPL14 DDX5 UBB CFL1 ITM2B TXNIP NEAT1 MRPS6 HNRNPU PDIA3 HLA-E ADAM10 JUND RPL37A SYNE2 LCP1 KLRD1 CST7 CFLAR HMGB1 SRRM2 RPL6 RUNX3 CALR ACTR2 ROCK1 DDX17 YTHDC1 FYN FYB1 ACTB NACA CALM1 SON EMP3 STK4 CDC42 H3F3A MACF1 FCER1G CIR1 YBX1 RPS6 HINT1 RPSA OST4 TMPO RPL5 HSP90AA1 ZBTB7A BRK1 SERBP1 KLRC1 PPIA\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY TPT1 RPLP1 RPS19 RPL10 HLA-B RPL13 RPS27 NEAT1 TMSB4X HLA-C RPL18A RPS3 NKG7 RPL13A RPS3A RPS15A PRF1 RPL5 RPL28 RPL23A RPS24 RPS23 RPS29 RPS9 HSP90AB1 RPL30 RPS12 HLA-A HNRNPA2B1 RPS20 SYNE2 RPL11 EIF1 RPS14 ITM2B RPS6 FTH1 PNRC1 RPS15 CST7 GAPDH UBC KLRD1 UTRN RPS7 HSP90AA1 STK4 RPL9 RPL37 USP8 RPS13 GIMAP7 RPL6 SORL1 ZFAS1 NSRP1 GBP4 TXNIP PTMA C12ORF75 RAP1B PRRC2C SP110 CTSC GOLGA4 RPL29 NUCKS1 PTPRC SRRM2 S100A4 EIF4G2 RPL36AL SEPT7 RBM33 CAST RPL24 TOMM7 TMPO ARL4C JAK1 DDX46 BTF3 RBM39 PNISR NCL PYHIN1 RPL3 ARPC2 RPS27L RPL37A RPS21 ZNF91 ZEB2 ODF2L PPP1R18 MYBL1 RPL14 EIF3K\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 GNLY TMSB4X RPLP1 RPL10 CXCR4 RPL28 RPS3 PTMA RPL29 GAPDH HLA-B RPS6 RPL13 RPL6 RPS24 ANXA1 RPL37A RPS12 RPL14 CST7 HMGB1 RPS19 PTPRC RPS14 KLRD1 RPS23 RPL38 UBA52 RPS20 RPS15A RPS3A RPL18A RPS27 RPL30 NKG7 HLA-A RPL13A GNAS SH2D2A UQCRB SARAF RPL36AL RPL22 RPL36 ARPC5 RPS7 RPL5 RPL24 IFT57 UBB RPS13 RPL3 UBC CD247 ARL4C H3F3B GZMA NOP53 RPS15 RPL9 PSMA7 RARRES3 BZW1 S100A6 RPL37 TYROBP CNBP ANAPC16 CALM1 ACTB HSP90AA1 LYN RAC2 CLEC2B YWHAB LSM6 BTG3 MRPS6 ITM2B RPS9 CLTA COX6C CHST12 HLA-C CYBA GYPC RPS21 JAK1 SUMO2 RPL31 NDUFS7 HLA-E SERF2 MXRA7 RPL23A METAP2 TOX RPL11\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY TMSB4X RPL10 RPLP1 RPL13 TPT1 RPS19 NKG7 RPS14 HLA-B RPL13A RPL23A RPL30 RPS27 RPS6 TYROBP RPL3 RPS3 RPL28 RPS7 SYNE2 RPS3A RPL37A PTMA HLA-A RPS15A RPL37 PTPRC RPS24 EMP3 HLA-C CYBA RPS23 RPS12 CST7 S100A4 RPL18A RPL24 RPS13 EFHD2 RPL29 SEPT7 RPS29 RPL39 OPTN NEAT1 DDX5 RPS15 IKZF3 MYOM2 LTB CAST PRMT2 SET PRRC2C KLRD1 RPL14 PRF1 NFKBIA TXNIP CFL1 H3F3B SERF2 PNRC1 RPS9 RPL23 HLA-E MPHOSPH8 UBA52 H3F3A RPL5 SLFN5 ATRX RPL36AL PTPRE SON RPL6 FCER1G RAP1B TRIR HNRNPA3 RPS20 MSN UBB RPS21 COX7C PIP4K2A ACAP1 RPL9 MBP MYH9 RAC2 NEMF SF3B1 ATP5MF ITGAL SERBP1 RPL27 APOBEC3G\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY TMSB4X RPL10 RPS3 HLA-B RPLP1 RPL28 RPL13 TPT1 RPL30 RPS14 RPL18A HLA-C HLA-A RPS19 RPS15A RPS6 PTMA NKG7 CALM1 GIMAP7 RPL3 RPL29 RPS12 RPS3A NFKBIA RPL24 RPL9 RPS15 EMP3 HSP90AA1 CYBA UBC RPS20 RPL6 AES S100A4 RPL14 RAP1B CFL1 RPL23A RPS24 TXNIP ITM2B MYL12A PRF1 RPS23 RPS7 ATP6V1G1 TES SCAF11 S100A6 ARL6IP5 GNAI2 FTH1 RPL36AL XRCC5 OPTN SOD1 GZMA RPS9 KLF6 PPIA PTPRC NCL STMN1 PIM1 BTN3A2 RPL27 ARPC2 TYROBP CST7 EIF1 PSMA7 EVL SMARCA5 TAPBP RBL2 RPL39 TOMM7 NRBF2 SARAF MYL12B NEAT1 BROX VAPA RPS13 NAP1L1 TRIR RHOA ANXA1 PLAC8 ATP5MG IFITM2 KLRD1 HLA-E RPL13A STK17A RHOC\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPS19 GNLY TMSB4X RPLP1 NEAT1 RPL10 RPS27 HLA-A PTMA RPL28 RPS3 TPT1 RPL13A RPL13 CMC1 ACTB RPS24 RPL36 GIMAP7 RPS15A PTPRC ITM2B RPS14 RPS15 PYHIN1 HLA-B RPS7 RPL37 PNISR FCER1G H3F3A RPL30 KLRD1 RPS23 EVL STK4 RPS3A CLEC2B CST7 HLA-E RPL24 SP100 LCP1 RPS12 RPL11 FYN STK17A NKG7 NACA PIK3R1 JAK1 RPL23A COX7A2 RPSA RABAC1 APOBEC3G RPL37A RPS13 TYROBP HSP90AA1 SRGN ALOX5AP RPL10A SNRPD2 RPL18A KMT2E MYCBP2 RPL29 RPL6 IL32 PNRC1 CALM1 HAVCR2 RAC1 MYL12B CD81 PSME1 RPL5 EIF1 CYBA RARRES3 KIAA1551 ZRANB2 UBA52 EFHD2 MBP MSN SCAF11 YWHAB RPL23 PPIA REST RPL27 ORMDL1 RPS6 SET EEF2 RSRP1 SRSF11\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X GNLY RPLP1 PTMA TPT1 HLA-B CYBA PTPRC RPL13A RPS12 NKG7 HNRNPA2B1 TXNIP RPS14 OPTN RPL13 RPL10 RPS3 RPS3A RPS27 RPL14 HMGB1 RPL6 CST7 RBM39 HLA-A ATM SYNE1 RPS24 NACA RPL11 TYROBP CLEC2B RPS7 RPS13 RPL29 GIMAP7 RPS6 ITM2B RPL23A GOLGB1 KLRD1 PRDM2 NR3C1 UBA52 RPL24 HSP90AA1 SKIL SF3B1 ARL4C PSME1 ARPC5 RPS19 RPL18A RPS23 RPL30 HLA-C PNRC1 RPL3 SERF2 PSMA1 SETD2 DNAJB6 CFL1 RPL39 MSN DNAJA1 UBC LUC7L3 CXCR4 GZMM RPL37 KANSL1 ACTR2 METAP1 S100A6 CAST FAM49B USP7 SLFN5 HLA-F RFC1 DDX17 C1ORF21 RPS15 EFHD2 SKAP1 DNAJC8 RPS15A SPEN FNBP4 VIM CCL4 RPL28 RPS9 ACAP2 SEPT7 ACTR6 CD53\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY TMSB4X RPL10 RPLP1 RPL30 RPS12 RPS19 RPS27 HLA-B PTPRC NEAT1 RPL29 RPL13 ACTB TPT1 PTMA RPS14 RPL13A RPL28 S100A4 RPS24 RPL37A HLA-C CALM1 RPS23 RPL14 RPL5 GAPDH RPS15 RPS9 RPS15A RPL6 ABCF1 KIAA1551 RPL18A RPL11 RPL36AL MYOM2 VIM RPS3A RPL3 SUMO2 H3F3B CYBA CD247 RPS20 RPS3 KMT2A RPS13 SRRM2 HNRNPA2B1 UBC KLF13 ARPC2 RPL36 RPL27 DEF6 PITPNC1 SF3B2 PSMA7 EEF1D HNRNPU PKM PPP3CA EFHD2 IFITM2 RPSA HLA-A ATP5F1E UBXN1 PSMD12 SON RPS21 YY1 UBR2 NACA PFDN5 UBA52 ATP5IF1 MACF1 SLFN13 NSD1 DDX17 TGFB1 UTRN DDX5 MYH9 DDX46 SET ZRANB2 LCP1 SKIL DEK NAP1L1 RALBP1 RPL23A HINT1 HLA-E RORA\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 TMSB4X GNLY RPL10 RPS19 RPS14 RPS3 RPL13 RPS3A RPS12 RPL30 RPS27 RPL3 ACTB RPL13A RPS23 RPS15A RPL6 RPL28 RPL29 HLA-B RPL11 RPL18A NACA RPS9 RPS15 PTPRC RPL39 RPL14 CXCR4 RPS21 PTMA RPS6 SLC25A6 SH2D2A CYBA NKG7 RPL9 RPS24 TYROBP RPL23A RPS7 RPSA RPS13 UBA52 PIK3R1 NFKBIA HOPX SEPT7 GAPDH EEF1D SNX6 STK4 RPL5 RARRES3 HINT1 TXNIP N4BP2L2 RPL37 STK17B RPS29 XRCC5 RPL38 JAK1 ISG20 LYST COX7C RAB11B CD96 CD247 RPL22 ADSS MYBL1 TRIM56 ITGB2 RPL37A MYL12B CST7 MT2A GPRIN3 N4BP2L1 PFDN5 GZMA RORA KTN1 VPS28 RAC2 PNRC1 RPL36AL BPTF HLA-E HLA-A NCL RPS20 CTR9 IFI16 KATNA1 TNRC6B\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY TMSB4X RPLP1 RPL13 TPT1 RPS12 HLA-B RPL10 NKG7 RPL28 HOPX HLA-A RPS27 RPL30 RPL9 RPS3A RPS24 RPS23 CAST RPS19 RPS14 RPS6 RPL11 PTMA NEAT1 RPL6 RPL18A TXNIP RPL13A HSP90AA1 HLA-E RPL3 RPS7 SEPT7 RPL5 RPL14 MYBL1 RPS15 RPL37 HLA-C GOLGB1 ACTB CST7 H3F3A GNPTAB APOBEC3G ARPC2 HNRNPA2B1 SYNE2 S100A6 LUC7L3 TYROBP RAP1A UBA52 RPL36AL TLN1 MYL12A HSP90AB1 RPL37A SET SERF2 GSTP1 ITM2B HMGB1 PNRC1 NPM1 BIRC3 CTSW RPSA RPS9 RPS20 CFL1 CHCHD2 SMCHD1 HNRNPK NR3C1 PLEK HINT1 CYBA HNRNPU PTPRC CD247 CDC42 UBB PAK2 LITAF IGF2R COX7C LBH CALM1 LCP1 PNN ELF1 GNAL CTSC RAMP1 SRRM2 AKAP13 NACA\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X GNLY RPLP1 TPT1 RPL10 RPS19 NEAT1 HLA-B RPS27 RPS14 RPL13 RPS12 PTMA RPL30 RPL18A RPL28 RPS3 RPS24 RPS3A NKG7 KLRD1 CFL1 ARPC2 RPS23 RPL13A RPL37 HLA-A PRF1 RPL36AL GNG2 TCF25 H3F3A GIMAP7 MYO1F RPS15 DDX17 RBM39 TXNIP RPL14 RPL37A PARP14 UBA52 NR3C1 CLEC2B RNF213 RPL38 CD247 HLA-C RPL6 ACTB GZMA ITM2B RPL29 RPL11 HLA-E NACA TYROBP SERF2 LEPROTL1 PDIA3 PTPRC TLN1 AC245297.3 FMNL1 CXCR4 CCSER2 SLCO3A1 TOMM7 HLA-F ARL4C CLIC3 GSTP1 CST7 STK4 MIER1 KLRF1 DDX46 RPS15A SEPT7 EFHD2 RPS7 RPL5 IVNS1ABP DYNLL1 ZBTB44 RORA GPX4 SP100 CYBA PRRC2C RPS9 KMT2E GAPDH RPL9 BPTF SH2D2A LDHA RPL27 CFLAR\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY TPT1 TMSB4X RPLP1 RPS14 RPL10 RPL13 RPS12 RPS19 HLA-B RPL37 RPS3 ANXA1 RPS15A RPL23A RPL14 RPS27 RPL29 RPS3A RPS13 KLRD1 PTMA RPS23 S100A4 RPL18A HOPX UBA52 RPL39 RPL11 RPL6 RPS7 STK17A CD2 CALM1 RPL30 RPL9 RPL3 RPL13A RPL36 RPL31 PNRC1 SET IFITM2 NCL HLA-A SON MSN RPL27 SEPT7 GIMAP7 PARP14 RPS6 UBC YBX1 RPL28 CST7 RPS15 TPR HLA-E MYBL1 SRGN RPL36AL RPS20 PTPRC EIF1 SUMO2 ARPC2 FYN IFI44L ISG20 SRPK2 RPS9 XBP1 KLRG1 S100A11 PPIA KLRC1 ARL4C CALR HSP90AB1 LCP1 HLA-C RPL5 PSMA7 HNRNPA3 HINT1 KMT2E LINC00861 JUND AKNA JAK1 KIAA1551 TYROBP NACA NFKBIA RPL24 AC245297.3 IL2RB TAX1BP1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY RPLP1 PTMA TPT1 TMSB4X RPL10 RPS19 RPL13 RPS12 RPS27 HSP90AB1 RPL28 CD2 RPL3 HLA-B HLA-A RPS7 RPS14 RPL13A GAPDH RPL11 NKG7 IL32 RPL30 RPS3A RPS23 RPL37 RPS3 RPS24 KLRD1 RPL6 RPS6 RPL5 RPL23A RPL18A RPL10A RPS13 NPM1 RPS15A RPS15 TNFSF10 VIM RPSA HSP90AA1 YBX1 RPL14 HNRNPA2B1 KLRC1 HLA-C ACTB LDHA ATP5F1E RPL9 AHI1 RPL37A RPL22 NACA RPS9 EIF1 ARL4C RPL39 RPL27 APOBEC3G PPIA HNRNPU SERF2 GPX4 UBB UBA52 EMP3 GIMAP7 CALM1 RPL29 DEK NCL SRGN RPL4 SLC25A6 FTH1 TNFRSF18 CDK6 FABP5 RPL24 CLEC2B RPL36AL UBC H3F3A HNRNPA3 PSMA7 RPS21 MSN RPL36 PGGT1B GSTP1 PTPRC TYROBP CTSW GNAS DDX17\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY TMSB4X HLA-B NEAT1 PTMA HLA-A NKG7 RPLP1 HNRNPA2B1 MRPS6 RPL10 TXNIP RPS19 MYBL1 SRGN H3F3B RPL28 UBB RPL6 RPS15A KLRC1 TPT1 MSN RPL36AL HSP90AA1 ITM2B PNN TLN1 CMC1 HLA-E PSMA7 CYBA SRRM2 GZMA PTPRC S100A10 JAK1 TPM3 HLA-C RPL13A BCLAF1 SEPT7 STK17A PHF3 PRF1 DDX5 ANXA1 DNAJC8 H3F3A CHCHD2 RPS12 EIF1 ATP5F1E CST7 FTH1 RPL13 PLEK SLC38A2 IKZF1 SELENOW SEPT6 GIMAP7 RPS3 RALBP1 SRPK2 NCL RPL30 EIF5 RORA PLAC8 RAC1 STK4 LUZP1 PNISR RPS15 RPS24 BTN3A2 SUN2 DDX17 SETX KLRF1 PIP4K2A PCNT COX7C ATM UBC OTUD6B-AS1 DNAJA1 CSK PDE4D FAM107B TUT4 FKBP2 SF3B1 IFITM2 RPL37 ATP2B4 ELOB PYHIN1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY TMSB4X TPT1 PTMA TYROBP HLA-B RPLP1 RPS14 RPS27 CCL4 RPS19 RPS3 RPL28 PTPRC HLA-A NKG7 TXNIP RPL10 RPS12 RPL13 RPL6 HLA-C RPL30 RPL37 RPS15A RPS3A CST7 RPL37A HLA-E RPS6 CYBA RPL11 MYL12A S100A4 ARPC2 FCER1G CAST FGFR1OP2 CCNI SYNE2 GZMA PRF1 LBH RPS23 SERF2 OST4 RPL14 IQGAP2 ARL4C GTF3A UBA52 RPL13A CD74 RPS21 GIMAP7 APOBEC3G RPS24 SET STAT4 ITM2B FTH1 IKZF3 JAK1 RPL39 EMP3 KLRD1 HMGB1 MYBL1 CSNK1A1 RPL18A RPL36 RPL38 AES CTSW RNF213 RARRES3 RPSA GNPTAB RPL10A HNRNPA2B1 CAMLG RPL22 SLC38A2 H3F3A EIF5A PSME1 PYHIN1 CLEC2B RPS7 SRSF5 PARK7 XRCC5 UBC PRELID1 EIF1 PSMD8 HERC1 MSN HIPK2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X GNLY RPLP1 TPT1 RPS27 RPL13 RPS14 RPL30 NKG7 RPS12 RPS3 RPL28 RPL14 RPS19 RPL27 PTMA RPL10 RPS6 RPS23 RPS24 SERF2 HLA-A KLRD1 ITM2B RPS3A RPS15A RPS13 CXCR4 PRRC2C HLA-B RPL36AL RPS29 RPL18A RPL29 UBA52 S100A4 RPL13A HLA-C PNRC1 RPL6 GIMAP7 RPS9 JAK1 PTPRC RPL11 RPS7 H3F3B HOPX UBC RPL37A GBP5 SEPT7 RPL5 PAXX RPS15 RPS20 RPL39 CFL1 RPL37 RAC1 NCK1 DDX46 BOD1L1 MSN STX16 ARL4C H3F3A ATP5F1E MRPS6 APMAP SON RPL10A RPL24 NACA HLA-E MRFAP1 SRGN RPS21 SUMO2 LSP1 CHCHD2 RPL23A KLRC1 PRF1 IFI16 RPL3 EIF4A2 CXXC5 DYRK2 LUC7L3 CYCS AKAP13 SP3 CCDC66 CDC37L1 DSTN C9ORF16 FLOT2 C19ORF25\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 TMSB4X GNLY RPLP1 RPL10 RPL13 RPS14 RPS27 RPS19 RPS12 RPS3 RPS3A RPL30 RPL13A HLA-B PTMA RPS21 RPS15 RPL3 RPL28 RPS15A HLA-A RPL18A RPS6 NKG7 RPL24 ITM2B RPL37 RPS7 RPS23 FTH1 UBA52 RPS24 RPL14 RPL23A CXCR4 PTPRC KLRD1 RPS9 TXNIP CALM1 GIMAP7 RPL29 ACTB RPL39 ATM RPL10A RPL5 RPSA RPL31 HNRNPA2B1 ATP8A1 CST7 RBM39 SRGN RPL11 PNRC1 RPL6 DDX17 RPL9 HLA-E KLRC1 RORA RPS29 SON UQCRB HMGB1 CD247 PAK2 RPL36 HSP90B1 BBX PFDN5 UBC SEPT7 PIK3R1 H3F3A TRIR JAK1 RPS13 KMT2E HLA-C RPL22 HNRNPA3 RPL37A FGFR1OP2 SRP72 BTN3A2 ACTR3 RPS20 TOMM7 H3F3B DNAJC8 EEF1D DDX46 IL18RAP NCL MPLKIP YWHAZ\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPL13 RPS12 TMSB4X RPL10 RPS3A RPS14 RPS15A RPL3 RPL18A RPS23 RPL30 RPL28 RPS27 RPL11 RPS19 RPL37 RPS3 RPL13A RPL39 RPS6 RPL14 HLA-B RPS15 RPL29 RPL9 RPS7 PTMA RPL6 RPL24 RPSA RPS24 LTB RPS13 RPL27 RPL10A RPS21 NACA RPL37A RPS9 UBA52 RPL5 HLA-A RPL23A RPL22 RPS29 FTH1 H3F3A RPS20 HLA-C RPL36 EIF1 RPL38 HSP90AA1 IL7R ACTB RPL23 CD3D GIMAP7 PNRC1 SARAF COX7C HLA-E PTPRC SEPT7 SLC25A3 STK17A SERF2 ITM2B GNLY LEPROTL1 ARID5B EEF1D TOMM7 UQCRB JUND ATP5F1E YWHAB IL32 UBC PPIA BTF3 CALM1 SAP18 CD2 RPL31 YBX1 CMC1 FYN SUMO2 ATP6V0E1 UBB PFDN5 PSMA7 GIMAP4 CLEC2B PRPF38B MYL12B\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY RPLP1 TPT1 TMSB4X RPS3 RPS27 RPL10 RPS12 HLA-B RPS3A HLA-A RPS15A RPL13 RPL13A RPS14 RPL14 S100A4 NKG7 RPS19 RPL28 RPL39 IL32 RPL30 RPS23 RPL18A RPL3 RPL11 PTMA RPL6 RPS24 HLA-C VIM RPL37 S100A6 RPSA RPL24 PTPRC RPS15 ARPC2 RPL23A RPS21 RPL37A RPS6 CD3G RPL9 ACTB RPL29 CCL4 ARL4C UBA52 PFDN5 MYL12B FTH1 ITM2B MBP RPL36AL HLA-E CALM1 RPL23 RPS7 RPS20 UBC NACA TLN1 HMGB1 S100A10 RPL38 BIRC3 CAST RORA APOBEC3G RPS9 CD3E EMP3 COMMD6 RPS13 CFL1 SON KIAA1551 SERF2 CST7 KANSL1 SP100 HSP90AB1 TC2N PNRC1 CTSW CCNI NUCKS1 JAK1 RPL36 PRF1 KLRC1 HOPX ANXA1 STK4 CD226 PKM EEF1D\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY TMSB4X HLA-A RPLP1 HLA-B RPS19 FTH1 TPT1 RPL28 RPS12 RPS3A PTMA TXNIP RPL13 RPL30 RPS23 RPL10 RPS27 CD247 RPS14 RPS24 RPL11 RPL24 RPS3 PTPRC HP1BP3 RPL23A TAX1BP1 RPL39 GIMAP7 S100A4 RPL3 RPS20 RPL37 MPHOSPH8 RPL37A UBA52 RPS7 MACF1 PNRC1 HLA-E STK4 MBP CASP8 RPL31 UBB CCDC12 YWHAB RPS15A SYNE2 NEAT1 ATM H3F3A LCP1 RPL6 CREBRF CAST SON RPL13A ERN1 HSP90AA1 ACTR2 RPL5 PSME1 CALM1 SLFN5 CYBA PRF1 LBH EEF1D RPS6 EIF1 KLF13 RPL29 RPS9 KAT6B JAK1 PCGF5 ABAT RPL10A CMIP HNRNPDL SRSF5 N4BP2L2 ATP5MG ATP5IF1 ARPC2 RNPS1 CLINT1 ATP5PF FYN IQGAP1 ATP5F1E BTN3A2 CCL4 PAIP2 RPL18A RPS21 ARL4C\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X RPS12 RPLP1 RPL10 TPT1 RPS19 RPL13 RPS23 RPL28 RPS14 RPS27 RPS3 RPL30 RPL29 RPS7 RPL5 RPS21 RPS3A CD2 RPL39 RPL13A RPL37 RPS6 IL32 RPL37A ACTB GAPDH HLA-B RPS9 RPS15A RPL14 RPL18A PTMA PPP1R14B RPL23A RPL11 BIRC3 RPS20 SLFN5 VIM RPL27 RPS24 RPS15 RPS29 RPL6 RPS13 PFDN5 NKG7 UBC HLA-C RPSA RPL24 RPL9 S100A6 CYBA RPL36AL PAXX PTGES3 NACA S100A4 SP100 HLA-A HSP90AA1 NEAT1 HNRNPA2B1 SYNE2 PTPRC RPL31 HSP90AB1 SRGN CLDND1 STK4 TBL1XR1 APOBEC3G IL7R SERBP1 YWHAZ CXCR4 JAK1 ITM2B LCP1 NPM1 RPL3 EEF1D NCL MRPS6 NDUFA1 RPL23 PABPC1 SCAF11 RGCC PAK2 PRPF8 RPS4Y1 H3F3A TOMM20 STK17A UBE2D3 N4BP1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY TMSB4X RPS19 RPLP1 RPS15A RPS3 TPT1 RPL29 RPS27 RPL13 RPL10 RPS24 RPL28 RPS3A RPL6 RPS14 NKG7 RPS6 HLA-B RPL14 CCL4 RPL36 RPL13A RPS12 RPS15 PTMA RPL3 CST7 RPS23 RPL11 HLA-A ISG15 RPS21 RPL24 RPL37A PNRC1 RPL30 RPS9 TOMM7 HLA-C RPL37 RPS4Y1 S100A4 CYBA RPL9 EEF1D CD48 UBA52 ACTB SRGN HLA-E H3F3A GAPDH MSN RPL36AL RPL39 PARP14 GIMAP7 RPS7 FAM200B CFL1 GZMA GBP5 RAD21 TNIP1 GMFG RPS20 JAK1 HNRNPA2B1 EPSTI1 TM9SF3 BAG1 UBC ISG20 ALOX5AP CALM1 IKZF3 SERF2 RPL31 SON TYROBP PRRC2C PRF1 IRF2 RARRES3 STX6 RPL18A RPL23A ARL6IP5 FTH1 RBPJ BIN2 CALR DGKD ARHGAP25 RNF213 IQGAP1 HIF1A DDX3Y\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY RPLP1 TPT1 RPS24 TMSB4X RPS3 RPS15A RPL30 RPS14 RPL13 RPS12 RPL10 RPS23 RPL37 RPS19 S100A4 RPL5 RPL29 RPS27 RPL28 RPS7 RPL6 HLA-C HLA-B RPL14 PTMA IL32 NKG7 SEPT7 HLA-A NACA RPL24 DDX5 RPL11 RPS3A SYNE2 CCL4 PTPRC RPL39 RPL3 PNRC1 RPS15 ZEB2 RPL4 GBP5 RPS9 RPS20 UBA52 RPL13A ATP5MG RPL9 KIAA1551 EEF2 NR3C1 FTH1 ARL4C RPS6 RPL23A FNBP1 RPS13 ACTB RPL37A EIF3K RPL18A APOBEC3G RNF213 HSP90AA1 NFKBIA ARL6IP5 GBP1 ATRX EIF1 PRELID1 RPL27 SERF2 ZC3HAV1 AKAP13 IER5 BRD7 PRF1 ZBTB1 TYROBP ASH1L CFL1 JAK1 CAST MYL12A SH2D2A LUC7L3 NCL KLRC1 CFAP97 RBM39 TAF7 TRIR CD247 GBP4 GAPDH SNRPG\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY TMSB4X RPLP1 HLA-B RPS19 TPT1 NEAT1 RPL30 S100A4 RPL14 HLA-C RPL13 RPL28 RPS27 RPS14 DDX5 CFL1 RPS12 HLA-A H3F3A RPS21 SEPT7 NACA RPSA HNRNPU RPL18A IL32 NFKBIA SYNE2 RPL37 ITM2B RPL10 RPL11 NKG7 RPS23 MRPS6 RPL37A ARAP2 EMP3 TXNIP UBC ARL4C PTMA HNRNPA2B1 ANXA1 RPS6 NCL S100A6 RPL23A SLFN5 RPS3 RPS7 STK17A SUMO2 RSRP1 RNF213 RPL9 LUC7L3 RPL6 RPS15 EIF3K ZFP36L1 CST7 MYO1F DDX17 CAST RPS15A CD53 GOLGA4 H3F3B CD247 RAP1B TLN1 TGOLN2 YBX1 BTF3 MYL12B DEK SRRM2 RORA UBA52 NAP1L1 ARID4A RAB8B COG2 EVL PRF1 CD37 PRPF40A SET EIF4G2 RPL36 HLA-E SON UBA6 UQCRB RPL23 MAN1A1 RPL31\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY TMSB4X RPLP1 RPS3A RPS27 RPS19 RPS3 HLA-B RPL28 RPL30 NEAT1 RPL10 KLRD1 TPT1 PTMA RPL37 RPS14 DDX5 RPL14 HLA-A CD247 RPS23 LCP1 RPS24 SYNE2 RPL6 GZMA RPS15A RPL24 CCL4 UTRN PTPRC NKG7 RPL11 HLA-F HLA-C RPL3 UBA52 MBP RPL29 MYL12A RPL27 RPL18A RPL13 RPS12 H3F3A RPL5 PRF1 RPL13A TCF25 HNRNPU SEPT6 NKTR FTH1 ACTB IQGAP1 CD69 SLFN5 RPS7 H3F3B ITM2B ZRANB2 HP1BP3 RPL22 CHST12 RPL37A RPS13 SORL1 RPS9 RBM6 ARL4C HLA-E RPL38 RPL23A RPS15 JAK1 RPS6 DDX46 MSN VPS28 RPL36 CALM1 TXNIP PRMT2 PYHIN1 PLEK GZMM KIAA2026 EIF1 RPS29 HNRNPA2B1 EEF1D CD46 RPS4Y1 SEPT7 AOAH ARID1B NOP53 RBL1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: GNLY TMSB4X TPT1 RPLP1 HLA-B RPS19 RPS3 RPS12 RPS14 RPL13 RPS3A PTMA RPL10 TXNIP RPS27 GIMAP7 RPS15A RPS23 MALAT1 RPL6 RPS24 HLA-A RPL29 RPS6 NACA RPL3 UBA52 IFITM2 RPL37 CST7 RPL30 RPL9 RPL13A FCER1G PTPRC RPL14 SEPT7 SARAF RPL36AL PPP1R2 RPL11 RPS9 PNRC1 RPL24 SON CALM1 GAPDH FYB1 JAK1 TYROBP EIF4A2 H3F3A RPL37A ANXA1 SERBP1 NCL SSR2 RPL23 HLA-C RPS7 GZMA PRRC2C SRSF4 DNAJA1 NKG7 C1QBP HNRNPA2B1 GLRX CD2 SET PTPN4 EIF5 MYL12A KLRD1 ATP5MG HLA-E VASP KLF6 EIF5A HOPX RPS20 RPL10A PAK2 CALR RPL5 NDUFA1 EIF3K UBB PRF1 STK17A RNF213 CD247 HSP90AA1 FTH1 RPS21 AES RPS15 HNRNPH1 PHF20L1 SPN\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY RPLP1 TMSB4X TPT1 RPL10 RPS12 RPL28 RPL13 RPS19 RPL13A RPS27 RPS14 RPL11 PTMA RPL18A HLA-B ACTB RPS15 RPS7 RPS3 RPS15A RPS6 RPL14 RPS3A NKG7 RPS23 RPS24 RPL3 CFL1 RPS29 RPS21 HLA-A NACA RPL9 NEAT1 RPL30 RPL6 RPS13 H3F3A RPL24 RPL23A RPL39 RPSA RPL27 RPL37A BTF3 GZMA CD2 RPL29 RPL23 UBA52 HLA-C IL32 APOBEC3G ARL4C CYBA KLRC1 ATP5MG MYL12A S100A6 RPS20 SERF2 RPL37 PSMB9 HMGB1 VIM RPL38 ARAP2 RPL36AL RPL5 CALM1 GPRIN3 CALR ALOX5AP SEPT7 HNRNPA2B1 U2SURP TPM3 COPB1 N4BP2L2 ARPC2 PPIA CXCR4 HLA-F LTB H3F3B NCL MRPS6 ATRX CD48 HSP90AB1 EPC1 PARP14 CDC42 DHX9 CLEC2B MACF1 NT5C2 CTSW\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: GNLY MALAT1 TMSB4X HLA-A ACTB RPLP1 HLA-C RPL13 PTMA PTPRC RPL10 GBP1 HLA-B IL32 TPT1 RPL28 RPS3A RPS23 RPS15A NKG7 CST7 RPS24 TNFSF10 GIMAP7 RPS14 EIF1 RPS15 RPL30 RPS12 RPL24 RPL6 APOBEC3G S100A4 DNAJA1 NACA RPS6 STK17A RPS3 GZMA GBP5 FCER1G RPS27 RPS9 RPL13A RARRES3 MYL12A NFKBIA HLA-E RPL23A CALR TYROBP RPL11 CYBA JUND RAMP1 SERF2 UBA52 RPL14 RPS20 EFHD2 GAPDH RPL5 IFITM3 ISG20 RPL37A RAP1B PFDN5 HSP90AA1 TYMP RPL29 ARL6IP5 HLA-F HINT1 NFKB1 PSME1 FEZ1 SFPQ PRPF38B PSMA7 TOMM7 COX7C RAB27A CTSW PRF1 MYBL1 HSP90AB1 RPL36AL NEAT1 ITM2B CFL1 KLRD1 ISG15 RPL10A BTF3 H3F3A ADGRE5 ZFAND6 SRPRA PPIA GBP2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TMSB4X RPL10 RPS19 TPT1 CCL4 RPL13 RPS27 RPS12 RPS23 RPL30 IL7R RPS3A RPS14 RPL28 RPS3 GNLY HLA-B RPL11 RPL18A IL32 RPL13A PTMA RPS7 RPL37 RPL3 RPS15A RPS24 UBA52 RPL9 HLA-A RPS13 NACA RPS15 RPS21 S100A4 HMGB1 RPS6 RPL6 RPL23A RPL14 GIMAP7 RPL27 RPL24 NKG7 RPSA ITM2B CALM1 RPL29 CST7 RPL39 HLA-C ARL4C H3F3A LTB FTH1 RPL36 RPS29 RPS20 CCL3 PNRC1 PTPRC AES CCL4L2 SRGN RPL5 TXNIP CYBA SEPT7 JAK1 HLA-E RPS9 LCP1 RPL31 YBX1 PRRC2C RPL38 S100A10 ELF1 RPL23 KLRD1 MYL12A HNRNPA2B1 RPL37A S100A6 EEF1D CD247 RPL22 DDX5 AKAP9 GNAS SF3B1 ATP5MG ARPC2 ARHGDIB PPP2R5C PFDN5 NCOR1 CYLD\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL10 TPT1 PTMA RPL13 RPL11 RPS23 PTPRC RPS19 RPL13A RPS12 RPL3 RPS27 RPL6 RPS3 RPL28 RPS3A RPS15A RPS6 RPL30 RPS14 RPL29 HLA-A RPS13 RPS20 RPL9 TMSB4X RPS21 KLRD1 RPS9 RPL14 RPL23A RPL10A DDX5 RPL37A HNRNPU NACA RPL37 RPL23 RPS15 H3F3A RPL5 RPL18A H3F3B RPS29 TNFRSF18 AKAP13 HLA-B RPL39 HNRNPA2B1 KIAA1551 PNRC1 ACTB JUND LYST CLEC2D RPL38 ITGA4 MARCKSL1 PPIA HLA-C CLEC2B MBNL1 RPS24 CFL1 SMAP2 MYL12A ATRX EEF1D SKP1 CREM GBP5 PRKCH PABPC1 UBB S100A4 RPL27 KMT2E IRF2 RPL31 CHD4 CCDC69 KMT2C RPL24 HNRNPDL ANAPC5 CCNI NCL HSP90AB1 MSN FTH1 RPSA CFLAR FYB1 CD3G TNFRSF4 ANKRD28 ZC3H13 TOMM7\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TMSB4X HLA-B RPL10 GNLY NKG7 PTPRC RPS3 RPS27 PTMA RPS12 RPS19 RPL11 RPS14 RPL13 RPS3A RPL23A TPT1 GZMA RPS23 PRF1 TXNIP RPL37 RPS6 RPL18A CST7 RPS20 H3F3A RPSA RPS15A RPL9 HLA-A UBA52 FGFBP2 RPL13A RPL27 CYBA RPL28 RPL14 RPS24 RPL10A SRGN HLA-E CD247 SP100 RPS9 RPS21 HLA-C RPS15 RPS13 FTH1 KLRD1 RPL29 RPL36AL FYN CAST ITM2B COX7C HIPK2 NCL UPP1 STK17A RPL3 HMGB1 HNRNPU MYL12A PLEK SUB1 S100A4 RPL5 RPL22 RPS7 C4ORF3 IQGAP1 RNF213 PIM1 PNRC1 PCBP2 RPL39 TMED9 SH3GLB1 RPL30 RPL37A UBC CLEC2B MGAT4A GMFG GIMAP7 TCF25 EEF1D GNAI3 DYNLL1 TAGLN2 CCNI SMARCA5 JMJD1C CHCHD2 ZEB2 PLEKHO1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 GNLY TMSB4X NEAT1 NKG7 HLA-B RPLP1 RPS27 TPT1 RPL10 RPS19 RPS12 HSP90AA1 RPL5 CALM1 SYNE2 TXNIP RPS23 S100A4 RPL13 HLA-C UBC RPS15 RPS14 PTPRC RPS3A RPS20 CST7 RPS7 RPS15A DDX17 H3F3A RPL29 PSME1 ACTB EMP3 PTMA RPL13A RPS9 RPL30 CAST RPL6 RPL18A GIMAP7 S100A6 MYH9 KLRD1 CYBA SAMD9 RPL11 SUMO2 CFLAR VPS13C BAX HNRNPA2B1 HOPX SEPT7 RPS24 SF3B1 RPL37 FYN EIF1 PRF1 NCL GOLGA4 CD99 IL10RA RPL28 FYB1 HMGB1 RPL9 AKAP9 TYROBP PTPN4 GZMA ANP32A NFKBIA ARAP2 ATP5F1E IQGAP1 APOBEC3G GLIPR1 MTSS1 RAB29 CX3CR1 NUCB2 HLA-E HSP90AB1 RPL14 NDUFA1 NPM1 HLA-A SERF2 SLAMF6 BIRC6 SRSF7 MYBL1 RPL3 RPL37A LCP1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "NK" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 TPT1 RPL10 RPS27 RPL30 RPS12 RPS3A TMSB4X RPS3 RPS14 RPLP1 RPS23 RPL13A RPS6 RPS15A RPL39 RPL28 RPL3 RPS13 RPL9 RPL11 RPL37A RPL14 RPL18A RPL29 RPS15 RPS21 RPS19 RPL24 UBA52 RPL36 RPL37 RPL5 RPL22 PABPC1 GIMAP7 RPL23A RPL27 RPS7 RPSA NACA RPS20 RPL6 RPS24 RPL10A LDHB RPL38 RPS29 LTB RPS9 RPL31 NAP1L1 RPL23 PTPRC ACTB HNRNPA2B1 SERBP1 RBM25 SERF2 PTMA ENO1 TOMM7 PHF3 SYNE2 PFDN5 HSP90AB1 PSMA7 H3F3A HINT1 RPL36AL NPM1 HSP90AA1 HLA-C HLA-A CD3G C12ORF57 HNRNPU S100A6 SLC25A5 RSL1D1 HMGB1 HLA-B EIF3H CCNI NOP53 TTC3 FYB1 PPIA UBC CD37 FTH1 JAK1 HLA-E SCAF11 CYP20A1 SNRPD2 ITM2B OST4 EEF1D\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL10 TPT1 RPL13 RPS12 RPLP1 RPL30 RPL13A RPL28 RPS14 RPS3A RPS27 RPS23 RPS19 TMSB4X RPS3 RPS15A RPL3 RPS6 RPL23A RPL11 RPL39 RPL18A RPL37A RPL14 RPL9 RPS13 RPL29 RPL23 RPS20 RPL37 RPS21 RPL24 RPL6 RPL5 PTMA RPS9 RPS15 RPL10A RPSA LTB RPS29 UBA52 RPS24 HLA-B RPL36 RPL27 NACA RPL22 RPL38 RPL31 RPL4 HINT1 RPS7 COX7C HNRNPA2B1 IL7R PABPC1 BTF3 NAP1L1 EEF2 TOMM7 PTPRC LDHB HLA-C ACTB RPL36AL H3F3A EMP3 CD48 GIMAP7 SLC25A6 GIMAP4 HSP90AB1 SERBP1 HLA-E NPM1 HLA-A RPS4Y1 HNRNPK PNISR PDCD4 HNRNPU PFDN5 STAT1 JAK1 GNAS ITM2B SARAF CCNI CALM1 HSP90AA1 ATP5F1E ARL4C PSIP1 EIF1 SET CD3E PABPC4 HMGN1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 RPS12 TPT1 RPL10 RPS27 RPS14 RPS19 TMSB4X RPS13 RPS3A RPS23 RPL37 RPL30 RPL18A RPL28 RPL11 RPS6 RPL14 RPS21 RPS3 RPL39 RPS15A RPS7 PTMA RPL23A RPL13A RPL3 RPL29 RPS24 RPS20 RPS9 UBA52 RPL9 LTB H3F3A ACTB RPL5 RPL6 NACA RPL37A RPL23 RPL27 RPS29 GIMAP7 RPL36 RPS15 RPL10A RPL22 RPSA RPL38 SARAF RPL4 RPL24 VIM GIMAP4 S100A6 IL32 HLA-B TRAF3IP3 PNRC1 SERF2 GBP2 EIF1 YBX1 HLA-C PFDN5 TCF7 HINT1 ATP5F1E EEF1D ARPC5 RPS4Y1 S100A11 MLLT3 RPL31 RGS10 TRIR LDHB STAT1 HNRNPA2B1 MYL12A BTF3 SON NOP53 ARPC2 EVL SLC25A6 CD48 ECH1 PRPF38B HMGB1 PNISR EEF2 EPSTI1 TOMM7 PTPRC HSP90AB1 IMP3\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL10 TPT1 RPL13 RPS12 RPLP1 RPS14 RPL11 RPL30 RPS27 RPS15A RPS6 RPS23 RPS3 RPS3A RPL3 RPL28 RPS13 RPL37 RPL13A RPL9 UBA52 TMSB4X RPL23 RPL39 RPS15 RPS19 RPS20 RPL23A RPL37A RPL18A RPS24 RPS21 RPS7 RPL29 RPL24 RPL5 RPL14 RPS9 RPL6 RPSA RPL10A PTMA RPL27 NACA RPS29 HLA-B RPL22 RPL36 RPL38 RPL31 RPL4 TOMM7 PABPC1 NAP1L1 LTB CCR7 AES NPM1 EIF3E ATP5F1E PTPRC FXYD5 VIM COX7C UQCRB NUCKS1 EIF1 CD48 ACTB GIMAP7 EEF1D S100A10 ATP5MG FTH1 S100A6 HLA-E SERF2 ARHGDIB SON PTGES3 PFDN5 CD2 ITM2B ARPC2 ARL4C CDC42 SEPT7 BTF3 SLC38A1 GAPDH TNFRSF25 HLA-A YWHAB FYB1 SERP1 ARGLU1 HLA-C RGS10 LDHB\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 TPT1 RPS12 RPL30 RPL10 RPS14 RPL13A RPS3A RPS27 RPL28 RPS13 RPS15A RPS23 RPS6 RPL11 RPL5 RPL29 PTMA RPS3 RPS21 RPS19 RPL37 TMSB4X RPS15 RPL14 RPL9 RPL3 RPL18A RPL6 RPS20 RPL37A RPL39 RPS9 RPL10A RPL23 RPS24 RPL24 RPL23A RPL31 UBA52 RPSA RPS29 RPL27 RPL22 RPL36 HSP90AA1 RPS7 ACTB NPM1 RPL4 PTPRC GIMAP7 HLA-A HSP90AB1 NACA FTH1 H3F3A HLA-B PFDN5 SET TOMM7 CALM1 RPL36AL HINT1 ARHGDIB KIAA1551 HMGB1 HLA-C AES NAP1L1 IKZF1 UQCRB PABPC1 STAT1 N4BP2L2 LTB RPS4Y1 HNRNPK PNN NCL LDHB BTF3 YBX1 SKP1 RPL38 PTGIR EMP3 DNAJC19 ATP5MG GIMAP4 HNRNPA2B1 RAB2A CD3G SNRPE PRMT2 SRRM1 SOD1 NUCKS1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPS12 RPS19 RPL13 TMSB4X RPS14 RPS27 RPS6 RPS3 RPS3A RPL11 RPL10 RPL37 RPS29 RPL6 RPL13A RPS23 RPL28 RPS15A RPL39 RPL18A RPL29 RPL14 RPS7 RPL23A RPS13 SARAF UBA52 RPL30 IL7R RPL9 RPL38 RPL5 CALM1 RPL24 RPL36 RPS15 RPL27 NACA RPL23 LTB RPS21 RPSA PTMA GIMAP7 RPS24 VIM PTPRC RPS20 RPS27L HLA-C RPL3 RPS9 ATP5MG HLA-A S100A6 GIMAP4 HLA-B PFDN5 ITM2B BTF3 EMP3 SEPT7 HINT1 RPL37A SET YBX1 C12ORF57 EEF2 ANXA1 CD3G NOP53 GIMAP1 TMEM123 SRSF5 RPL4 SSB EIF1 SUB1 PASK H3F3A RPL31 HMGB1 GTF3A EVL RPL36AL RPL22 UBB ALKBH7 FYB1 ANP32B SERBP1 FTH1 JAK1 NSD3 PNRC1 SUN2 LUC7L3\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 RPL10 RPS12 RPS14 TPT1 RPL30 RPL3 RPS27 RPS3A RPS15A RPS23 RPL28 RPL9 RPL18A RPS6 RPL11 RPS3 TMSB4X RPL13A RPL39 RPL14 RPL37 RPL23A RPL36 RPS19 RPL29 UBA52 RPS13 RPS20 RPS7 RPL37A RPL6 RPS15 RPS29 RPSA RPL23 RPL10A RPL22 RPL5 PTMA RPL24 RPS24 RPS9 RPL27 RPS21 RPL38 NACA HLA-B PFDN5 CCR7 EIF1 RPL31 NOP53 RPL4 H3F3B DDX5 C6ORF48 PABPC1 BTF3 UQCRB SARAF CALM1 EEF1D EIF3E RPS4Y1 GIMAP7 HNRNPA2B1 FTH1 TOMM7 YBX1 CD3E H3F3A CFL1 EIF4B GPBP1 GIMAP1 FYB1 NHP2 NPM1 LTB HSP90AB1 PNRC1 PTPRC COX7C EIF3F EIF3H SLC25A6 SERP1 EEF2 ANP32B CD37 NDUFA1 SLC25A5 HSP90AA1 HLA-A POLR1D CD48 MYL12B\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPL10 RPLP1 TPT1 RPS14 RPS6 RPL13A RPS3A RPS19 RPS12 RPL30 RPL18A RPS27 RPL28 RPS23 RPL11 RPL3 RPS3 RPS15A RPL6 RPL39 RPS13 RPS20 RPL9 RPL29 RPS7 RPL23 RPL37 RPS21 PTMA RPS9 RPS15 RPL14 RPL24 RPL5 TMSB4X RPL23A HLA-B UBA52 RPL37A RPS24 RPSA RPL31 RPL10A RPL22 GIMAP4 RPS29 NACA RNF213 RPL38 ISG15 RPL36 HSP90AB1 RPL27 MX1 CD48 FYB1 SLFN5 PABPC1 NAP1L1 ITM2B TCF7 EEF2 STK4 PPIA PNRC1 RPL4 EEF1D HSP90AA1 CD3D EIF2AK2 HLA-A SP100 EPSTI1 CLEC2D SARAF DRAP1 CCR7 SF3B1 H3F3A TMEM123 EMP3 NEAT1 IFI16 IFI44L GTF3A LTB XRN1 UQCRB PARP14 HINT1 IL7R MYCBP2 EIF1 HNRNPA2B1 ENO1 SMCHD1 C6ORF48 SF3B2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TMSB4X TPT1 RPL10 RPS12 RPS27 RPS3A RPL13 PTMA RPS19 HLA-B RPL18A RPS13 RPL14 RPS3 RPS14 RPL28 RPS15A RPL39 UBA52 RPL9 RPL11 RPS15 RPL23A MRPS6 PTPRC RPL24 RPL30 RPL36 RPL13A RPL3 CCR7 RPS29 RPL22 HLA-A RPL36AL RPL37A IL7R RPL27 LTB NACA RPL5 HINT1 RPL29 RPS23 CD3G ELOB HSP90AA1 TOMM7 RPS7 HNRNPA2B1 S100A6 ATP5F1E RPL37 RPSA RPS20 DNAJA1 HNRNPU H3F3A RPS6 EMP3 ANXA1 SKP1 TXNIP ITM2B BTF3 EIF1 MPHOSPH8 UQCRB CD55 HNRNPA3 PSMA7 HLA-C MSN LEPROTL1 GIMAP7 CALM1 ATP5MG STAT1 RPL6 FTH1 SUMO2 LDHB NCOR1 NEAT1 ATP6V1G1 GIMAP4 AIP SUZ12 SON NDUFV2 ARL4C CCT4 EEF1D PPP1R2 ATP5MPL COX6A1 RPL10A DDX6\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 RPL10 TPT1 RPS12 RPS14 RPS27 RPS3A RPS6 RPL28 RPL13A TMSB4X RPS23 RPL3 RPL23A RPS15A RPS19 RPL30 RPL18A RPS3 RPL39 RPL29 RPL37A RPL23 RPL37 RPL11 RPL9 RPS21 RPS13 RPL10A RPSA RPS15 PTMA RPL36 RPS24 RPL5 RPS20 RPL14 RPS9 RPS7 RPS29 RPL24 RPL6 RPL22 RPL31 NACA RPL38 HLA-B NPM1 UBA52 LTB RPL27 NCL PTPRC ACTB GIMAP7 LDHB HINT1 EEF2 ANP32B EIF1 NAP1L1 GTF3A ENO1 ITM2B CD3D RPL36AL HSP90AA1 BTF3 PABPC1 ATP5F1E VIM GIMAP4 SERF2 RPL4 C12ORF57 EEF1D PFDN5 NDUFV2 EMP3 AES CYBA EIF3E TOMM7 CD55 TXNIP TRAT1 YBX1 ARPC2 HLA-C RASGRP2 CD48 CORO1A C4ORF3 CCNI CCR7 CNOT6L CLEC2D TPM3\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPLP1 RPS12 RPS14 TPT1 RPL10 RPL13A RPL28 RPS19 RPL30 RPS3 RPS3A RPL11 RPL18A RPS6 RPS27 RPS13 RPS23 RPL37 RPS15A TMSB4X RPS7 RPL23 RPL9 RPL5 RPL39 RPS24 LTB PTMA RPS21 RPL37A RPS15 RPL3 RPL29 RPL23A RPL6 RPSA RPL14 RPS9 RPS29 RPS20 RPL24 RPL27 RPL22 RPL38 RPL36 NACA UBA52 RPL10A PABPC1 HLA-B GIMAP7 PFDN5 RPL31 HLA-E PTPRC HINT1 ACTB EEF1D HLA-C NAP1L1 ITM2B TOMM7 SARAF COX7C H3F3A EMP3 BTF3 SLC25A6 CD2 HMGB1 IFITM2 NPM1 EIF4B CDC42 HLA-A YBX1 PNRC1 RPL36AL YTHDC1 GIMAP4 EVL HSP90AB1 SMAP2 S100A6 GBP2 CCR7 GTF3A SERBP1 RPS4Y1 EEF2 MAGED2 SYNE2 SERP1 PTGES3 STAT1 FTH1 PPM1K SEPT6\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 TPT1 RPLP1 RPS12 RPS27 RPS14 RPS23 RPL10 RPL28 RPL30 RPL39 RPS3A RPL13A RPL11 RPS15A RPS13 RPL18A RPL3 RPL37 RPS3 RPS6 RPS29 RPS24 RPS19 UBA52 RPL9 RPS7 RPS21 RPL5 RPL37A RPS15 RPL14 RPL23 RPSA RPL23A RPS9 RPL29 NACA RPL36 RPS20 HLA-B RPL10A RPL24 RPL6 RPL27 LTB PTMA NAP1L1 PABPC1 RPL31 RPL38 PFDN5 HLA-A RPL22 BTF3 ARL4C NPM1 EMP3 IL32 HLA-C TOMM7 COX7C PTPRC HSP90AB1 RPL36AL UTP23 EIF3F NOP53 FYB1 HINT1 EIF3E TRIR ARPC2 SERF2 NUB1 EEF1D LAPTM5 H3F3A EZR STAT1 FTH1 GNAS NDUFB2 YWHAB GIMAP4 LDHB TPM3 PPIA EIF1 ATP5F1E EEF2 LUC7L3 PRPF40A RWDD1 SRRM1 TCF7 HIST2H2AC PSMB9 MT2A\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPLP1 RPS12 RPS23 RPL13 RPS15A RPL30 RPL10 RPL11 RPS14 RPS27 RPS3A RPS3 RPS19 RPL37 RPL13A RPS13 RPL3 RPL18A RPL28 RPL37A RPS6 RPL39 PTMA RPL29 RPL24 RPS24 RPL9 RPS29 UBA52 TMSB4X RPS15 NACA RPL23A RPS9 RPL36 RPL23 RPL6 RPS20 RPL5 RPL27 GIMAP4 RPL14 GIMAP7 RPL22 RPS21 RPSA PTPRC RPL31 RPL36AL NCL PABPC1 GBP5 RPL10A HINT1 RPS7 SARAF HLA-A STAT1 HLA-C RPL38 NPM1 TOMM7 EEF1D BAZ1A HSP90AB1 IKZF1 EIF1 PFDN5 H3F3A KIAA1551 BDP1 RPL4 CD3E IL32 SERP1 SLC38A2 NAP1L1 FTH1 SUMO2 SRSF5 GBP1 HLA-B CLEC2D SNHG7 HNRNPU LDHB SMCHD1 VDAC2 HSPB1 DDX5 TRIR CCT5 PNRC1 CCR7 COX7C BRD7 TRIM56 HSP90AA1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 TPT1 RPS12 RPLP1 RPL10 RPS14 RPS27 RPL11 RPS3A RPL30 RPS23 RPS3 RPL39 RPS19 RPL9 RPL3 RPL28 RPS6 RPS15A TMSB4X RPL13A RPS13 RPL18A RPL14 RPS7 RPS15 RPL23 RPL29 RPL6 RPL23A RPL37 RPS20 RPL5 RPS9 PTMA RPL10A NACA RPL24 RPL37A RPL36 RPS21 RPL27 RPS29 RPL38 RPL22 RPSA ACTB GIMAP7 RPS24 RPL31 RPL4 HLA-B BTF3 CCNI HSP90AB1 SLC25A6 ATP5F1E EEF1D PTPRC GIMAP4 SERF2 PFDN5 LDHB TCF7 PABPC1 TPR CFL1 COX7C HMGB1 RPS4Y1 UBA52 SARAF IKZF1 EIF1 CALM1 H3F3A HINT1 ARPC5 TSHZ2 NAP1L1 SON RIPOR2 HLA-F HNRNPA3 MCUB TMEM123 FTH1 UFC1 PSMA7 SEPT6 RASGRP1 TOMM7 NPM1 LUC7L3 ATP6V1G1 LTB HLA-C FXYD5 COMMD6\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPL13 RPLP1 RPS27 RPL10 RPS12 RPS14 RPS23 RPS3A RPL11 RPS6 RPS15A TMSB4X RPL3 RPL30 RPL28 RPL13A RPS20 RPS13 RPL18A RPL6 RPS3 RPL39 RPS21 RPS15 RPS19 RPL37A RPL10A RPS24 PTMA RPL37 RPL23 RPL29 RPL14 RPL38 RPL23A S100A6 RPL9 RPS7 RPL24 RPL22 RPL5 UBA52 RPSA RPL27 RPS9 RPS29 LTB PTPRC RPL36 HLA-B HSP90AB1 NACA ACTB RPL31 COX7C H3F3A VIM PFDN5 HLA-C HLA-A CFL1 HINT1 YBX1 BTF3 RPL4 TOMM7 COX6B1 NAP1L1 MYL12A NDUFV2 HSP90AA1 SEPT7 STAT1 PPIA IL32 SARAF ARPC2 RPL36AL PIM1 PRRC2C CD48 GIMAP4 EDF1 SUB1 RWDD1 EIF1 CD3D EIF3K JAK1 DGKA LAPTM5 EVL COX7A2 GIMAP7 EEF1D GNAS PABPC1 LDHA\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPS12 RPL13 RPL10 TPT1 RPS3A RPL13A RPL30 RPLP1 RPS14 RPS23 RPS15A RPS27 RPS19 RPS6 RPS3 RPL11 RPL28 RPL3 RPS13 RPL29 RPL5 RPL18A RPL37 RPL39 RPS29 RPL9 RPS21 RPL23A RPS20 RPL14 RPL23 RPL10A PTMA RPS7 RPL37A RPS15 RPL36 UBA52 RPS9 TMSB4X RPL31 RPL24 NACA RPL6 FTH1 HLA-B RPS24 RPL22 PABPC1 RPL38 SARAF RPL27 RPSA EEF2 HLA-A RPL36AL EEF1D NEAT1 PTPRC LTB IL7R KLF3 STK4 HINT1 PNRC1 TCF7 COX7C EIF3F H3F3B RPL4 KMT2A GIMAP7 AQP3 EIF3E TOMM7 H3F3A S100A4 LDHB RIPOR2 NOP53 CIRBP ELF2 GOLGA4 RGCC TRAF3IP3 S100A6 ITM2B CD55 SERP1 ANP32B UBC DDX17 PFDN5 IKZF1 ST13 PPP2R5C CD44 LAPTM5 MPHOSPH8\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS12 RPL13 TPT1 RPL10 RPL30 RPS14 RPS27 RPS13 RPS15A RPS3 RPL11 RPS23 RPL13A RPS3A RPS19 RPL3 RPL28 RPL37 PTMA RPL18A RPS6 RPL14 RPL29 TMSB4X RPS15 RPS7 RPL37A RPL39 RPL36 RPL9 RPL23 PABPC1 RPS20 RPSA RPL6 RPL38 RPL23A RPS24 RPS29 RPL24 RPS9 RPL5 NACA RPL10A LTB RPL27 SARAF FTH1 RPL22 EEF1D HSP90AB1 HLA-B PTPRC RPS21 H3F3A HINT1 RPS4Y1 HMGB1 RPL36AL IL7R RPL31 UBA52 EEF2 CFL1 CALM1 ATP5MG EIF1 GIMAP7 SP110 NPM1 PCBP2 LDHB NAP1L1 GIMAP4 ACTB CD37 ITM2B ARID5B HLA-A EIF3E NUCB2 RARRES3 HLA-E IL32 NDUFB4 H3F3B ETS1 PFDN5 SKP1 GNAS IFITM2 U2SURP LEPROTL1 TOMM7 ATP5F1E NOP53 HLA-C SUMO2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPLP1 RPS12 RPL13 RPS3A RPL10 RPL28 RPL13A RPL30 RPS14 RPS23 RPS27 RPS13 RPS6 RPL11 RPS15A RPS3 RPL18A RPL3 RPL37 RPS15 RPL9 RPS19 RPL39 RPS24 RPL5 RPS9 RPL29 RPL37A RPS21 RPSA RPS20 PTMA NACA PABPC1 RPL23A LTB RPL14 RPL10A RPL24 RPL31 RPL27 RPL23 RPL36 RPL6 UBA52 RPS7 RPL38 RPS29 SARAF TOMM7 TMSB4X GIMAP7 RPL36AL RPL22 CCR7 CALM1 RPL4 HLA-A EEF1D HLA-B HSP90AB1 PFDN5 EIF1 NCL NEAT1 LDHB PNRC1 HLA-C ATP6V1G1 SERP1 NAP1L1 NPM1 GTF3A EMP3 BTF3 SNHG7 IL4R SKP1 FXYD5 EIF2S2 SCAF11 HINT1 PRPF40A SLC38A1 C12ORF57 TOMM20 CXCR4 HSP90AA1 IL7R CD3D ANP32B PDCD4 CHCHD2 H3F3A FTH1 BIRC3 ITM2B S100A6\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPL13 RPL10 RPL13A RPLP1 RPS12 RPS15A RPS27 RPL30 RPS3A RPL11 RPL28 RPL18A RPS14 RPS23 RPL9 RPL37 RPL39 RPS13 RPL29 TMSB4X RPS6 RPS15 RPS19 RPL37A RPL3 RPS24 RPS20 RPS7 RPL23A RPS3 RPL14 RPS21 RPSA RPS9 RPS29 RPL5 RPL31 RPL6 RPL10A UBA52 RPL23 RPL27 RPL36 RPL24 RPL22 PTMA HLA-B PTPRC NACA RPL38 HINT1 GIMAP7 ACTB EEF1D HLA-C EIF1 LTB HNRNPA2B1 TOMM7 RPL4 NPM1 EMP3 GBP1 C12ORF57 CCR7 GBP2 EIF3K EEF2 GBP4 FYB1 PABPC1 HLA-A NOP53 H3F3A COX6C CD3D GIMAP4 LDHB CD3G EIF3F ITM2B FTH1 S100A6 HMGB1 SLC25A5 SRRM1 HSP90AB1 TCF7 PNRC1 HNRNPK SP100 STAT1 GTF3A NDUFA4 CALM1 COMMD6 BTF3 CALR\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPL13 RPL10 RPS12 RPLP1 RPS14 RPS27 RPS3A RPS3 RPL28 RPS23 RPS19 RPS15A RPS6 RPL30 RPL11 RPS13 RPL13A RPL37 RPL3 TMSB4X RPL37A RPL9 RPS15 RPL39 RPS20 RPL5 PTMA RPL29 RPSA RPL18A RPL14 UBA52 RPL6 RPL23A RPL23 RPS21 RPS9 RPS29 LTB RPS7 RPL31 RPS24 RPL22 RPL36 RPL24 HLA-B NACA RPL27 RPL10A GIMAP4 PTPRC PABPC1 HLA-C PFDN5 GBP5 HLA-E NOP53 BTF3 CCR7 RPL4 GIMAP7 PSME1 SARAF LDHB EEF1D RPL38 IL32 AES CCNI YWHAB COX7C ATP5MG HSP90AA1 PNRC1 STAT1 EIF4B NAP1L1 GBP1 H3F3A KTN1 TOMM7 IKZF1 CD2 FYB1 ENO1 PPIA HLA-A SUMO2 EIF1 ARID4B RPL36AL HNRNPK SLC25A6 ATP5F1E ACTB ITM2B ARL6IP5 EEF2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPS12 RPLP1 RPL13 RPL10 RPS23 RPL13A RPL28 RPS14 RPS3 RPL18A RPS3A RPS27 RPL30 RPL11 RPS15A RPS19 RPS20 TMSB4X RPS9 RPS13 RPL37 RPS29 RPL39 RPS6 HLA-B RPL3 RPL23A UBA52 RPL37A RPL9 RPS15 RPS21 PTMA RPL5 RPS7 RPL14 RPL23 RPL36 RPL6 NACA RPL29 RPS24 LTB RPSA RPL10A RPL38 HLA-A GIMAP7 HSP90AB1 HNRNPA2B1 RPL22 RPL24 PTPRC RPL27 ACTB YBX1 GBP2 HINT1 NCL RPL31 HLA-C TOMM7 NPM1 GBP1 GBP4 LPIN2 EIF1 SMCHD1 GBP5 SET RPL4 COX7C SLFN5 CD48 ARL4C DNAJA1 GIMAP4 FTH1 VIM S100A6 EEF1D PABPC1 PSME1 H3F3A ITM2B CALR UBB HLA-E SAMD9 PFDN5 CAST PNISR RSL1D1 CCR7 COX6B1 RIF1 EIF4B SARAF\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPLP1 RPS12 RPL13 RPS6 RPL18A RPL13A RPS14 RPS27 RPL28 RPL11 RPS23 RPS19 RPS15A RPL10 RPL30 RPS3A RPL29 TMSB4X RPL5 RPS3 RPS21 PTMA RPL6 RPL23A RPL39 RPL14 RPS13 RPS9 RPL3 PTPRC RPL9 RPS24 RPL27 RPS20 RPL37 RPL24 RPL36 RPS15 RPS7 RPL31 RPL37A RPS29 PABPC1 RPL38 TOMM7 H3F3A UBA52 RPL10A NACA HLA-B RPL23 RPSA IL7R RPL22 GIMAP7 LTB EEF2 ACTB CCNI STK4 TCF7 EPB41 ATM CFL1 YBX1 HNRNPA2B1 CDC42SE2 ATP5F1E EMP3 C12ORF45 SARAF PRRC2C FOXP1 HSP90AB1 RPL36AL NAP1L1 WNK1 HMGN1 CALM1 TMEM123 PNRC1 ETS1 SERF2 SNHG7 PFDN5 SMCHD1 SOD1 PDCD4 TUT4 BCL11B NOP53 HLA-A HINT1 ZC3HAV1 CFLAR TNRC6B E2F3 DDX5\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPS12 RPL13 RPS14 RPL10 RPLP1 RPL13A RPS3A RPL30 RPL28 RPS27 RPS15A RPL11 RPS3 RPS6 RPL39 RPS23 TMSB4X RPL3 RPS19 RPL18A RPS13 RPL14 RPS21 RPS9 RPS15 RPS24 RPL37 RPL9 RPL23A RPL6 RPL29 RPS7 RPL23 GBP5 RPL38 NACA PTMA RPS20 RPSA LTB RPL27 RPL5 HLA-B GIMAP4 RPS29 GIMAP7 RPL31 RPL24 RPL36 RPL10A NEAT1 RPL37A UBA52 RPL22 GBP4 NPM1 IL32 EEF2 GBP1 SET S100A6 ITM2B NAP1L1 H3F3B BDP1 RPS4Y1 POU2F2 YBX1 UQCRB CD2 PABPC1 MX1 RPL36AL TOMM7 SP100 GBP2 FOXP1 EEF1D STAT1 EPSTI1 HLA-A TMPO HLA-C STK17A BTF3 SRRM2 LEPROTL1 SKP1 SERF2 SLFN5 HK1 COMMD6 CD3D ARL4C EMP3 DNAJC8 ACTB IFI16\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPL13 RPS12 RPL10 RPS14 RPS23 RPS3A RPL30 RPL28 RPS27 RPL13A RPL18A RPS13 RPL11 RPS6 RPS7 RPL3 RPS19 RPS3 TMSB4X RPL39 PTMA RPL29 RPL23A RPL14 RPL37 RPL5 RPS15A RPL6 RPL10A RPS15 RPL9 RPL22 RPS21 UBA52 RPS24 RPS20 RPL37A HLA-B RPSA RPS9 RPL24 RPS29 RPL23 RPL36 NACA RPL27 RPL31 RPL38 VIM H3F3A BTF3 HLA-C LTB TOMM7 SLC25A6 EEF2 FTH1 HSP90AA1 PFDN5 CALM1 COX7C GIMAP7 NOP53 UQCRB EIF3E ARHGDIB HINT1 PDCD4 SARAF UXT LDHB NPM1 SRRM1 RPS4Y1 ACTB HLA-E HLA-A GNAS GIMAP4 PABPC1 NAP1L1 PPIA S100A6 RPL4 YBX1 TAX1BP1 GTF3A YWHAB IL32 ANXA1 H3F3B ATM FYB1 SYNE2 IKZF1 SRSF9 DDX17\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPL13 RPS12 RPL13A RPS14 RPS23 RPL30 RPS15A RPL10 RPL28 RPS27 RPL18A RPS3A RPS19 RPS3 RPL3 RPS6 TMSB4X RPL39 RPL23A RPS24 RPS7 RPL29 RPL11 PTMA RPS20 RPL37A RPL23 RPS13 RPS15 RPL6 RPL37 RPL5 RPL27 RPS21 RPL9 RPS29 RPL36 NACA RPL24 RPL10A GIMAP7 RPSA RPS9 HLA-B RPL38 UBA52 NPM1 STAT1 RPL31 NCL RPL14 HSP90AB1 RPL4 PTPRC HLA-A GBP4 CALM1 RPL22 SERF2 EEF2 LTB SP100 ATP5F1E FAM107B ITM2B KDSR FTH1 PNRC1 PABPC1 SUB1 IL32 ARID5B C1QBP HNRNPA2B1 YBX1 NAP1L1 LDHB SMCHD1 RIPOR2 ETS1 COMMD6 EEF1D ACTB BOD1L1 RPS27L GYPC PPIA ZC3H8 PFDN5 SRRM2 HLA-C CD55 ANP32B APOL6 GBP1 BCLAF1 PRRC2C\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPLP1 RPL13 RPS14 RPL10 RPL30 RPL13A RPS12 RPS23 RPS15A RPS3 RPL11 RPL3 RPS3A PTMA RPL14 RPS13 RPL28 RPL23 RPS19 RPS6 RPL9 RPL29 RPL18A RPL37 RPS20 RPL39 RPS27 RPS15 RPS9 TMSB4X RPS21 RPL38 RPL24 RPS24 RPS7 RPL37A RPL23A RPL36 RPL5 UBA52 RPL6 RPSA RPL10A NACA RPS29 RPL27 LTB PFDN5 PABPC1 RPL31 RPL22 NPM1 BTF3 HLA-B HINT1 ACTB H3F3A RPL36AL LDHB TOMM7 HSP90AB1 IL32 HNRNPA2B1 CALM1 PTGES3 CD3D SKP1 HLA-A LUC7L3 SLC25A6 DDX17 ITM2B CORO1A HMGB1 EIF3H VIM NCL PNRC1 ATP6V1G1 GIMAP7 HSP90AA1 TNRC6B HNRNPU TTC3 C12ORF57 DRAP1 GMFG UQCRB FUS FKBP5 ARL4C FBL EIF3K GCC2 NDUFB2 CCNI ENO1 KIAA1551\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPS12 RPL13 RPLP1 TPT1 RPS3A RPS23 RPS27 RPS14 RPS15A RPL13A RPL10 RPL11 RPL28 RPL30 RPS3 RPL3 RPS19 RPS6 RPL18A RPL14 RPL39 RPL29 RPS21 RPS24 RPS13 TMSB4X RPS15 RPS7 PTMA RPS20 RPL37 RPL5 RPL37A RPL9 RPL6 RPS9 RPL24 RPL23A HLA-B NACA RPSA RPL23 RPL22 UBA52 RPS29 RPL36 RPL10A LTB RPL38 ARL4C HLA-A GIMAP7 STAT1 EIF4A2 TOMM7 COX7C GIMAP4 RPL36AL RPL31 PTPRC CD48 EIF3H HSP90AB1 IL32 HLA-C FTH1 HNRNPA2B1 EIF3E EEF2 UBXN1 C12ORF57 ARID4B RARRES3 HINT1 EEF1D LBH BTF3 RPL27 CD3G GNAS GOLGB1 GBP2 ATP5MG UQCRB NPM1 EIF4B S100A6 CWC22 TCEA1 COMMD6 HMGB1 CD3E NAP1L1 CD3D TAF7 NCL CD2 RPS4Y1 GBP4\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 TPT1 RPS12 RPL10 RPS27 RPL30 RPS14 RPL11 RPS3 RPS23 RPS3A RPS15A RPL13A RPS19 RPL28 RPS6 RPS13 RPL3 RPL9 TMSB4X RPS7 RPL18A RPL23A RPL37 RPL39 RPL5 RPL14 RPL37A RPL6 RPL24 RPS15 RPS21 RPS20 RPL29 NACA RPS29 PABPC1 PTMA UBA52 RPS9 RPL38 RPL36 RPL10A RPSA HLA-B RPS24 RPL22 RPL27 FTH1 RPL23 RPL31 HLA-C HINT1 PNRC1 RPL4 ACTB TOMM7 COX7C GIMAP7 LTB ITM2B HNRNPA2B1 PPIA HSP90AB1 EEF1D HLA-F PRPF4B DDX5 NPM1 HLA-A IL32 PTPRC ATP5F1E SARAF GIMAP4 EIF3K EIF1 S100A4 KIAA1551 ARPC2 CAST CD3E RPS4Y1 NAP1L1 AES SET RPL36AL UQCRB LDHB H3F3A SERF2 CFL1 MORF4L1 C12ORF57 EIF3E GAPDH HSPA5 BTF3\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 TPT1 RPS12 RPL10 TMSB4X RPS14 RPS3A RPS19 RPS6 RPL30 RPL11 RPL13A PTMA RPS15A RPS3 RPL28 RPS23 RPS27 RPS13 RPL37A RPL39 RPL18A RPL37 RPL14 RPS7 NACA RPL24 RPL23A RPL9 RPL10A RPSA RPS9 RPL3 PTPRC RPS24 RPL6 RPL5 RPS27L RPS15 RPS29 VIM RPL29 GIMAP7 ACTB HSP90AB1 RPL36 HLA-B IL7R RPL38 UBA52 ARHGDIB LDHB RPS21 TXNIP S100A11 HSP90AA1 HMGB1 RPL36AL EEF2 NPM1 MYL12B H3F3A PSMA1 HADHA RPL23 CYBA SARAF KTN1 PSMA7 HNRNPK RCAN3 RPS20 SKP1 IKZF1 YBX1 GNAS CD48 SLC25A6 EIF1 YWHAB IL32 OCIAD2 RPL31 BAX RPL27 COX7C HLA-C C12ORF57 PSME1 AES EPB41 RPS4Y1 BTF3 MSN HLA-A LTB SLFN5 FOXP1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPS12 TPT1 RPLP1 RPS27 RPS19 RPS3A RPS14 TMSB4X RPS3 RPS15A RPS6 RPL13A RPL30 RPL10 RPL11 RPL3 RPL28 RPS23 RPL39 RPL9 RPS9 RPL37A RPL29 RPL18A RPS13 RPS15 PTMA RPL37 RPL23A RPL14 RPS7 RPSA RPS24 RPS20 RPL27 RPS21 UBA52 RPS29 RPL6 RPL10A RPL24 HLA-B RPL23 RPL36 NACA RPL38 RPL5 RPL31 RPL22 PTPRC SARAF GIMAP4 PABPC1 LTB ACTB GIMAP7 FYB1 HLA-A HINT1 NEAT1 HSP90AA1 RPL4 COX7C HNRNPA2B1 GNAS NAP1L1 LDHB BTF3 RPL36AL GTF3A SEPT7 SON YBX1 TOMM7 FTH1 STAT1 EIF1 ITM2B EEF2 RIPOR2 EEF1D RPS19BP1 RPS27L TCF7 HLA-C SMCHD1 LEF1 GMFG CD37 SLC25A6 ZFP36L1 HSP90AB1 DDX17 PPIA EIF3E CD247 GYPC POLR2L\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPS12 RPL10 RPL13 RPS27 RPL30 RPS14 RPS15A RPL11 RPS3A RPS6 RPS23 RPS3 RPL28 RPL18A RPL3 RPL9 RPS19 RPS13 RPL13A RPS15 RPL37 TMSB4X RPS9 RPL6 RPL14 RPL39 HLA-B RPS7 RPL23A RPL5 RPS21 RPL23 PTMA RPS20 RPSA RPS24 RPL37A RPL10A RPL29 NACA UBA52 RPS29 PTPRC RPL36 LTB RPL22 PABPC1 RPL24 RPS4Y1 GIMAP7 RPL4 RPL38 HINT1 HLA-C RPL31 EEF1D TOMM7 RPL27 BTF3 UQCRB COX7C GIMAP4 ATP5MG STAT1 AES VIM H3F3A SARAF FYB1 EIF3F GBP5 LDHB CLEC2D PFDN5 PNRC1 HLA-A ACAP1 PSME1 ATM PSMB9 ITM2B GBP4 CDC42SE2 NUCB2 HLA-E ATP5MC2 HSP90AB1 EIF3K ACTB GYPC AIF1 HNRNPA2B1 SNHG8 SON AC245297.3 RSRP1 EIF1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPL13 RPS12 RPS14 RPL28 RPS23 RPLP1 RPS27 RPL10 RPL30 RPL13A RPL11 RPS3 RPL9 RPS15A RPS3A RPL3 RPS19 RPS13 RPL24 TMSB4X RPL37A RPL14 RPS24 RPS15 RPL29 RPL39 RPS9 RPL5 PTMA RPL18A RPL37 RPS21 RPL10A RPSA RPL31 RPS6 RPS7 HLA-B RPL22 RPS29 RPS20 RPL36 RPL6 RPL27 NACA RPL23 PTPRC EEF1D NPM1 IKZF1 CD3D RPL23A GIMAP7 HSP90AB1 PFDN5 IL32 ACTB LDHB NCL H3F3A HLA-A EMP3 UBA52 PRRC2C H3F3B ATP5MG HLA-C DHX29 PABPC1 ITM2B CD3G SRSF3 FYB1 TOMM7 SP100 MBNL1 CD48 UQCRB NAP1L1 COX7C RPL38 SSR2 HINT1 RSRC2 FKBP5 SLC25A6 TAF1D RPL36AL AES STK38 NONO LTB RSL1D1 CDC42SE2 CD3E SEPT7 GNAS C9ORF78\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPLP1 RPS12 TPT1 RPS14 RPS27 RPS23 RPL10 RPS3A RPL28 RPS6 RPL30 RPL13A RPS3 RPL11 RPS19 RPL6 RPS15A RPL3 RPL29 RPL5 RPS13 RPL18A TMSB4X RPL37 RPS7 RPL9 RPS24 RPS15 RPL14 RPS29 RPL37A RPL23A RPL39 RPS21 RPL23 NACA RPS9 RPSA RPS20 RPL10A RPL36 LTB RPL24 RPL27 RPL38 GIMAP7 UBA52 RPL22 RPL31 PTMA PABPC1 ACTB KIAA1551 HSP90AA1 HINT1 PTPRC NPM1 UQCRB HSP90AB1 SARAF NOP53 PPIA H3F3A HLA-B PSME1 TOMM7 SERF2 LDHB FTH1 COX7C EEF1D ZFAS1 GAPDH STK17B GMFG ARGLU1 ATP5F1E HSP90B1 DARS BIRC3 GNAS RPL36AL ARL4C EEF2 SLC25A6 RBM25 DDX5 COX7A2 AES CD2 NDUFA1 UPF2 CCDC59 RAC2 AKAP9 EIF3F CD48 THEM4\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPLP1 TPT1 RPS14 RPS12 RPL10 RPL30 RPS19 RPL28 RPL13A RPS3 RPS6 RPS27 RPS3A RPS23 RPS15A TMSB4X RPL3 RPL6 RPS13 RPL9 RPL37 RPS15 RPL18A RPL39 RPL11 RPSA RPL23 RPL14 RPL37A RPL29 RPS24 RPS9 UBA52 RPS7 RPL23A RPS20 RPL5 PTMA RPS21 RPL24 RPL31 RPL10A HLA-B RPL22 RPL27 RPL38 NACA LTB SARAF RPS29 GIMAP7 PFDN5 RPL4 NEAT1 NPM1 RPL36 BTF3 EEF1D EIF1 HSP90AA1 H3F3B PNRC1 PABPC1 YBX1 NOP53 ITM2B GIMAP4 PTPRC UBB HSP90AB1 HLA-A GYPC IL7R NAP1L1 NCL PTP4A2 RPL36AL HINT1 EIF3E ABRACL ATP5F1D HLA-E HNRNPA2B1 CDC42 EIF3J ZFAS1 EEF2 CCR7 LDHB GBP4 TSHZ2 SUB1 ANP32B IKZF1 HLA-C NSRP1 COX7C RBM39\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS12 TPT1 RPL13 TMSB4X RPS19 RPS27 RPL10 RPL28 RPS3A RPS23 RPS14 RPL30 RPL37 RPS13 RPL11 RPL13A RPL39 RPS3 RPS29 LTB RPL18A RPS6 RPL9 RPS20 RPL23A RPL29 RPS21 RPS15 RPS15A RPSA RPS24 RPL37A RPL3 RPL14 HLA-B NACA RPL27 RPL23 RPS9 PTMA RPL24 RPL38 HLA-A RPL5 HMGB1 ATP5F1E YBX1 RPS7 UBA52 SARAF ACTB RPL22 PTPRC RPL10A HINT1 ARPC2 RPL31 UBC EIF3G GIMAP4 EIF1 RPS4Y1 GIMAP7 ETS1 EMP3 NOP53 FTH1 CD3D GAPDH EDF1 H3F3A RPL36 NDUFB2 HSP90AB1 RPL36AL BTF3 SON LEPROTL1 LAPTM5 RIPOR2 LDHB HNRNPA2B1 SERF2 PFDN5 COMMD6 CALM1 SUMO2 RPL6 ADD3 TOMM7 HSP90AA1 ANAPC16 COX6A1 FYB1 PCBP2 MYL12A ITM2B PSMB1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPLP1 TPT1 RPS27 RPL30 RPS12 RPS14 RPL10 RPL28 RPS6 RPS3A RPS15A RPS13 RPL11 RPL18A RPS3 PTMA RPL13A RPL29 RPS19 RPS7 RPS23 RPL6 RPL37 RPS20 RPL39 RPL3 RPL14 RPL9 RPS24 RPL5 RPS15 TMSB4X RPS21 RPL10A RPL23A RPSA RPL31 RPL24 RPS9 RPS29 NACA PTPRC UBA52 RPL36 RPL38 RPL23 RPL27 RPL22 SARAF CD3D RPL36AL RPL37A ITM2B HINT1 LTB THUMPD3-AS1 CD3E GYPC CAMLG EIF1 EEF1D GIMAP7 HLA-B SNHG7 H3F3A TOMM7 USP15 ESF1 ARL4C PABPC1 NPM1 S100A6 COX6A1 PPIA MSL3 C12ORF57 PSME1 CD3G HNRNPU CLTA NAP1L1 FAM133B SRRM2 LUC7L3 ZRANB2 CYB5B ATP5MC2 EIF3F ZEB1 PRRC2C HLA-E TC2N CDK11A HSP90AB1 CXCR4 SERBP1 AES NDFIP1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPLP1 TPT1 RPL10 RPS14 RPS12 RPS15A RPS3A RPL28 RPL11 RPS27 RPL9 RPS19 RPL37 TMSB4X PTMA RPS3 RPL3 RPL30 RPS23 RPL14 RPS13 RPL36 RPL23A RPSA RPS6 RPS15 RPL13A RPL23 RPL18A RPL39 RPL29 RPL6 RPS24 RPS9 PABPC1 NACA RPL37A UBA52 RPS21 RPS7 RPS20 HLA-B NPM1 RPL5 RPL38 PTPRC RPL27 RPL24 PNRC1 RPS29 HLA-A BTF3 RPL10A IL7R PFDN5 RPL22 GIMAP7 SARAF RPS4Y1 LTB GNAS EEF1D EIF1 PRRC2C HNRNPA2B1 HINT1 TOMM7 RPL31 ARHGDIB UQCRB UBB UBXN1 CD48 RPL4 RPL36AL RPL36A HMGB1 FTH1 CALM1 ACTB EIF3H NOSIP SET COX7C HLA-C SYNE2 MTDH MAL KIAA1551 TPM3 YBX1 NAP1L1 HLA-E HSP90AB1 CIRBP ITM2B HNRNPC HSP90B1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL13 RPL10 RPS12 TPT1 RPS14 RPS3A RPLP1 MALAT1 RPS23 RPL29 RPL30 RPS27 RPL28 RPS15A RPL13A RPL11 RPS13 RPS6 RPS3 RPS15 RPL18A RPL37 RPS7 RPL9 RPL14 RPL5 TMSB4X RPS19 RPL6 RPL22 RPL3 RPS20 NACA RPL39 RPS21 RPS24 RPS9 PTMA RPL27 RPL24 RPL36 LTB HLA-B RPL38 RPL23 RPL10A RPL23A RPSA RPS29 RPL31 RPL37A EEF1D PFDN5 YBX1 S100A6 BTF3 TOMM7 ITM2B UBA52 CCR7 RPL36AL IL7R H3F3A HLA-C ACTB HSP90AB1 GIMAP4 ATP5F1E UQCRB LDHB SET CFL1 PSME1 GIMAP7 NPM1 EIF3F SERF2 TCF7 GMFG FXYD5 SARAF EIF3E HINT1 EIF1 SSB DRAP1 EEF2 MYL12A BIRC3 HSP90AA1 ARPC5 PPIA PTPRC ARHGAP12 CDC42 CALM1 COX6C HSPB1 FTH1 EIF2S2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPLP1 RPS12 RPL30 TPT1 RPL10 RPS27 RPL28 RPS23 RPS15A RPL3 RPS3A RPL11 RPS14 RPL13A RPL37 RPS15 RPS13 RPS19 RPL14 RPS6 RPL29 RPS3 TMSB4X NACA RPL39 RPL23A RPL9 RPL23 RPL18A RPL5 RPL36 RPS7 RPL6 PTMA RPS24 RPS9 LTB RPS21 RPS20 IL7R RPL27 RPL10A UBA52 RPL37A RPSA RPL38 RPL24 RPL22 TOMM7 RPL31 GIMAP7 EMP3 TCF7 RPS29 S100A6 EEF1D PPIA PABPC1 HLA-C NPM1 KTN1 COX7C PTPRC HNRNPA2B1 RPL4 RPL36AL SARAF NCL EVL HLA-B LEF1 FOXP1 IFITM2 CD3D HINT1 UQCRB UBXN1 HLA-E PNISR EEF2 ATP5MG ACTB NOP53 RGS10 LARP7 ATP5MC2 NPAT CD3E LDHB NAP1L1 EIF4B IL32 GNAS ARL4C PIK3IP1 PFDN5 SSR1 KMT2E\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPL13 RPLP1 RPL10 RPS3A RPL13A RPL28 RPL30 RPS14 RPS12 RPS23 RPS15A RPS27 RPL14 RPS6 RPL37 RPL11 RPL39 RPS19 RPL23 RPS3 RPL9 RPL23A RPL29 RPS24 TMSB4X RPS9 RPL37A RPS15 RPS13 RPL3 RPSA HLA-B PABPC1 RPS20 RPL18A RPL10A RPL5 RPS21 PTPRC RPL31 PTMA RPL38 RPL36 ACTB RPS29 SYNE2 RPS7 STAT1 NAP1L1 EEF1D RPL22 NCL RPL27 NPM1 RPL24 LTB HSP90AB1 UQCRB IL7R GIMAP4 EIF1 ATP5F1E HNRNPA2B1 SARAF TCF7 ANKRD11 FYB1 ENO1 NACA CDC42SE2 DDX17 IL32 RPL6 RPS4Y1 UBA52 H3F3B FXYD5 SMCHD1 CCR7 ETS1 COMMD6 ITM2B HLA-A ATM SMAP2 S100A10 SERF2 HINT1 AES CELF2 COX6C PPP4R3B ACTR2 EIF3E ARL6IP5 LDHB GIMAP7 EIF3H\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPS12 RPL13 RPLP1 TPT1 RPS14 RPS27 RPS23 RPL10 RPL11 RPL30 RPS3A RPS15A RPS3 RPS6 RPL13A RPL28 RPS15 RPS13 RPS19 RPL3 RPL29 RPL37 RPL18A RPL14 RPS20 TMSB4X RPL5 RPL23A RPL39 RPL36 RPS29 PTMA RPL37A RPL24 RPS9 RPL23 UBA52 RPL6 LTB RPL10A RPL9 HLA-B RPS7 NACA RPS21 RPL38 RPS24 HLA-A RPL27 PTPRC RPL22 IL32 RPSA RPL31 RPS4Y1 GIMAP7 FTH1 TOMM7 HINT1 PNRC1 UQCRB ATP5F1E STAT1 GBP5 GIMAP4 EEF2 FYB1 EEF1D CCNI ZFAS1 GBP4 EIF3E EIF3K ENO1 SSR2 ITM2B HLA-E RPL4 UBE2D3 SART3 SAMD9 COX7C RCAN3 TNRC6B UGP2 PABPC1 ATP5MG HMGB1 SMCHD1 CCR7 TPR PFDN5 BTF3 ATP6V1G1 DDX17 PRDM2 UBXN4 YTHDC1 GBP1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL10 RPS12 TPT1 RPL28 RPL13 RPS14 RPLP1 RPS3A RPS13 RPS27 RPS15A RPL13A RPS23 RPL30 RPL11 RPS19 RPS3 RPS24 RPL3 RPL39 PTMA RPL37A RPS6 RPL14 RPL29 RPS21 RPS9 RPL38 TMSB4X RPS15 RPL37 RPL24 LTB UBA52 RPL22 PTPRC RPL23 HLA-B RPL5 RPL9 RPL10A RPS29 RPL23A RPS7 RPSA RPL31 RPL6 RPL18A RPL36 RPS20 NACA PABPC1 RPL27 BTF3 C12ORF57 EIF3E HSP90AB1 IL7R RSL1D1 EEF1D NPM1 H3F3A SARAF RPL4 HNRNPA2B1 ATP5MG NEAT1 CORO1A HMGB1 NCL BAX SLC25A6 RPL36AL ETS1 ANKRD11 HINT1 PIM1 SUMO2 STK17B GNAI2 EIF4B SON HLA-A UQCRB ATP5F1E HSP90AA1 SRGN CALM1 SERF2 LUC7L3 YWHAB PPIA STAT1 GIMAP7 COX7C ATP6V1G1 LDHA TOMM7 TXNIP\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPL13 RPL10 RPL13A RPS12 RPL30 RPS27 RPS3A RPS3 RPS14 RPS15A RPS23 RPS6 RPL11 RPL3 RPL14 RPL28 PTMA RPL29 RPS15 TMSB4X RPL37 RPS24 RPS19 RPL18A RPS29 RPS13 RPL38 RPS21 RPL39 RPL24 LTB RPL23A RPL22 RPL23 HLA-B RPSA RPL9 RPL6 RPS7 GIMAP4 RPL36 RPL5 RPL27 RPL37A GIMAP7 NACA UBA52 RPL31 RPL4 DDX5 NPM1 RPS20 PFDN5 S100A6 HSP90AB1 BTF3 VIM ACTB PNRC1 RPS9 EEF2 LDHB HMGB1 CFL1 ETS1 IL32 H3F3A PRRC2C NCL ITM2B STK4 CYLD SEPT6 COMMD6 EEF1D ZNF91 IKZF1 SERBP1 HNRNPA2B1 LAGE3 HSPA5 ZFAS1 PKM PABPC1 KAT6A CHD7 KHDRBS1 SET PTGES3 NEK1 COX7C MYL12A EMP3 HLA-A COX7A2 NOP53 CD3G\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPS12 RPL10 RPL13 TPT1 RPL30 RPLP1 RPS15A RPS27 RPS23 RPS3A RPS14 RPL28 RPS3 RPS6 RPS13 RPS19 RPL13A RPL11 TMSB4X RPL18A RPL9 RPL3 RPL39 RPL23A RPS15 RPL29 RPL37 RPL6 RPS9 RPL37A RPL14 RPSA RPS24 RPS21 RPL24 RPL10A RPS29 RPS7 RPL36 UBA52 RPL23 RPL38 RPL5 RPL22 PTMA RPL27 RPS20 GIMAP7 PFDN5 NACA TOMM7 SARAF IL7R EEF1D COX7C FTH1 HSP90AB1 HLA-B RPL31 H3F3A ATP5F1E HLA-E NPM1 BTF3 COMMD6 PABPC1 ATP5MG LTB RARRES3 C12ORF57 ITM2B DDX5 EIF3F PSME1 EIF4A2 RPS4Y1 ANP32B GAPDH IL32 ZFAS1 PTPRC CD3G EIF1 CD48 HLA-A GNAI2 GNAS SON SRSF5 SSR2 UBXN1 GTF3A FCMR ZNFX1 ELF2 TGOLN2 COX6C AES EIF3E\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPL13 RPS12 RPL13A RPS27 RPS19 TMSB4X RPL10 RPS23 RPL18A RPS14 RPS6 RPL30 RPS13 RPL28 RPL11 RPS3 RPL37A RPS3A RPS15A PTMA RPL37 RPL29 RPL39 RPL14 RPL24 RPS21 RPS20 RPL36 RPL9 RPL3 RPL23A RPSA ACTB NEAT1 RPS29 RPL23 NACA RPS7 RPL6 RPL5 RPL22 IL7R RPS9 RPS15 SARAF RPL10A HLA-A PTPRC RPL27 RPL31 UBA52 PNRC1 HINT1 HLA-B YBX1 HMGB1 CCR7 HNRNPA2B1 IFITM2 LTB PNISR GIMAP4 HLA-C RPS24 EMP3 HNRNPU VIM PDCD4 GNAS PRRC2C TPM3 SYNE2 STAT1 HSP90AA1 ETS1 ITM2B RPL38 NCL LDHB PPIA ZFAS1 IKZF1 PSMA7 FTH1 COX7A2 SOD1 SMCHD1 ATP5MG EIF3E PABPC1 SNX6 GCC2 TCF7 S100A6 H3F3A GIMAP7 HNRNPDL\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPL10 RPS12 RPS27 RPLP1 RPL13A RPL13 RPS14 RPL18A RPS15A RPS3A RPS7 RPS3 RPL11 RPS23 RPL30 RPL9 RPL28 RPS13 RPS19 RPS6 RPL29 TMSB4X RPL37 RPL6 RPL23 RPL3 RPL37A RPS20 RPS29 RPS15 RPL5 RPS9 RPL22 RPSA RPL14 RPL23A NACA RPL27 RPL31 RPL39 PTMA EIF1 RPL36 RPS21 LTB RPL24 RPS24 HLA-B UBA52 PRRC2C RPL38 PTPRC SARAF UQCRB RPL10A HSP90AB1 HLA-E YWHAB EMP3 PNRC1 HINT1 HMGB1 ITM2B NOP53 HSP90AA1 EEF2 FOXP1 NAP1L1 PABPC1 LCK TMOD3 MESD PSMA7 GIMAP7 ARHGAP45 FYN TRAF3IP3 PPP2R5C COMMD6 CD55 CD3G HLA-C PPIA SLC25A6 RPS4Y1 GPBP1 LSM5 RPL36AL CD48 SYNE2 CORO1A BLOC1S2 ZNF292 GNAS PPP1R2 ELF1 DNAJA1 LAMTOR4\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL10 RPS12 RPL13 RPLP1 TPT1 RPS14 RPS19 RPS3 RPS23 RPS13 RPL30 RPS15A RPL11 RPS3A RPS15 RPS27 RPL28 RPL13A RPL3 RPS6 RPL18A RPL29 RPL5 FTH1 RPL37A RPL14 TMSB4X RPL9 RPS21 RPL39 PTMA RPS20 UBA52 RPS24 PABPC1 RPS9 RPL23A RPS7 RPL10A NACA RPL37 RPL23 RPL27 RPL22 RPL36 RPSA RPS29 RPL24 RPL6 COX7C EEF1D PTPRC LDHB VIM HINT1 HLA-C RPL4 EIF1 RPL31 H3F3A PFDN5 SARAF CD3E PNRC1 HLA-A RPL36AL RPL38 LTB HLA-B LAPTM5 FYB1 NPM1 ACTB STK17A GIMAP7 EIF3E IL7R HLA-E CALM1 NCL EIF4B STK4 HSP90AB1 HMGB1 TXNIP AK5 TCF7 SYF2 MRFAP1 SELENOW YBX1 HNRNPDL UPF3A PNISR HNRNPA2B1 GCC2 UQCRB FXYD5 NUCKS1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPL13 RPLP1 RPS14 RPS12 RPS27 RPS23 RPS3A RPL10 RPL30 RPS24 TMSB4X RPS3 RPL9 RPL13A RPS15A RPS6 RPS19 RPL28 RPL18A RPL37A RPL23 RPL39 RPL3 RPS13 RPL11 RPL5 PTMA RPL29 RPS29 RPS21 RPS15 RPL14 RPS7 RPL23A RPS20 RPL37 RPL24 RPL22 RPL27 RPSA UBA52 RPL10A GIMAP7 RPL36 RPL6 NACA RPS9 RPL38 EIF1 RPL31 CCR7 IL7R GIMAP4 HLA-B NPM1 TOMM7 VIM IKZF1 NEAT1 RPL4 PTPRC FYB1 ARHGDIB NAP1L1 EEF1D ITM2B DDX17 AES RPS4Y1 SNRPD2 LTB NOSIP TCF25 STAT1 KTN1 CD2 OCIAD2 YBX1 PRMT2 COX6B1 SERF2 CCT3 LDHB ATP5MG LBH H3F3A HLA-A PNRC1 LINC00861 HINT1 CAPZB IL32 PCBP2 SON SERP1 EEF2 FOXP1 GOLGA4\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPL13 RPL10 RPS3A RPS14 RPS12 RPS23 RPL13A RPL11 TMSB4X RPS27 RPL28 RPS15A RPS15 RPS6 RPS19 RPL30 RPS3 RPL39 RPS13 RPL29 RPS24 RPL9 RPL18A PTMA RPL14 RPL5 RPL3 RPL37 RPL22 RPL23 RPSA RPL23A RPL37A RPL36 RPS20 NACA LTB RPL10A IL32 RPS7 RPL6 HLA-B RPS9 RPL27 RPS21 UBA52 HSP90AB1 RPL24 NCL H3F3A RPS29 VIM BTF3 GIMAP4 HMGN1 HNRNPA2B1 PTPRC PNRC1 RPL31 EEF1D NAP1L1 PSME1 PNISR RPL38 C1QBP CAST PSMA7 RPS4Y1 HSPA5 PABPC1 NOP53 RPL4 RPL36AL HSP90AA1 YY1 ARHGDIB GBP5 EIF1 CD74 GIMAP7 CD3D SERP1 PFDN5 NPM1 NUCB2 SRRM1 PPIA H3F3B CDK11A C9ORF78 GLS PRRC2C MYL12B MSN HLA-A HLA-C PIM1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPS12 RPL10 RPL13 RPLP1 RPS27 RPS3A RPL30 RPS3 RPL28 RPL13A RPS14 RPS15A RPL3 RPS23 RPS6 RPL11 RPS19 RPL37 TMSB4X RPL18A RPS13 RPL23A RPL23 RPS9 PTMA RPL9 RPL29 RPL22 RPL14 RPS21 RPL39 RPL5 HLA-B LTB UBA52 RPS29 GIMAP7 RPS7 RPL10A RPL6 RPS15 RPL24 RPL37A RPL38 RPS20 PTPRC RPS24 GIMAP4 HSP90AB1 RPL27 RPSA ARL4C HLA-A SRRM2 PABPC1 CFL1 HLA-C ACTB RPL31 NCL NEAT1 MTDH PNRC1 ENO1 CD3D FYB1 EMP3 TOMM7 PHF3 EIF1 TPR HMGB1 HSP90AA1 HNRNPA2B1 NOP53 SARAF PNN GBP5 RIPOR2 ITM2B ACTR2 STAT1 EEF1D RPL36 NAP1L1 HNRNPU CCR7 MORC3 FXYD5 NACA HNRNPF HP1BP3 PSME1 SF3B1 OXNAD1 COX7C FOXP1 PCF11\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD4+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPS12 TPT1 RPLP1 RPL10 RPS14 RPS23 RPL3 RPL28 RPS27 RPS3A RPS15A RPS19 RPS6 RPL11 RPL30 RPS3 TMSB4X RPL13A RPS13 RPS9 RPS24 RPL14 RPS15 RPL6 RPL29 RPL18A RPL37 RPL5 RPL39 RPL23A RPL10A RPL9 RPS7 RPL24 RPS21 LTB RPL36 RPS29 PTMA NACA HLA-B RPL23 ACTB RPL27 RPL38 RPS20 RPL22 UBA52 RPL4 RPL37A RPSA PABPC1 RPL31 GAPDH LDHB RPL36AL HSP90AA1 NEAT1 HLA-C PTPRC CCR7 EEF1D HINT1 DDX5 GIMAP4 IL32 DDX17 IL7R VIM H3F3A CALM1 HLA-A CORO1A GIMAP7 EIF1 HSP90AB1 BTF3 JUND NCL S100B UQCRB RSRP1 SET CLEC2D H3F3B PNRC1 ARHGDIB SMAP2 SLFN5 KIAA1551 EEF2 SEPT7 PPIA ITM2B C12ORF57 GPATCH2L FYB1 TMPO\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 TPT1 RPS14 RPL10 RPLP1 RPS12 RPL13A RPS3 RPS15A RPL28 RPS27 RPL30 RPS3A RPS23 RPL11 RPL18A RPS6 RPL14 RPS19 RPS13 RPL3 RPS15 RPS20 RPL37 RPL23A RPL9 RPS7 RPL29 RPL39 RPS24 PABPC1 RPL27 TMSB4X RPS29 RPL31 RPL23 NACA RPL5 NEAT1 RPL6 RPS21 RPSA PTMA RPL22 UBA52 RPS9 RPL24 RPL37A RPL36 RPL10A RPL38 HLA-B NAP1L1 BTF3 EIF1 PNRC1 COX7C EIF3E RPL4 RPL36AL LDHB SYNE2 HLA-C PASK GBP5 VIM FOXP1 RPS4Y1 IL7R EEF1D HINT1 STAT1 NPM1 HLA-A TOMM7 UQCRB EIF4A2 EEF2 ZFAS1 PFDN5 SET TXNIP PSMB9 MIER1 EIF4B PDE3B NCL RBM25 SARAF GIMAP4 PTPRC DDX24 PPIA HSP90AB1 DDX5 GBP1 MRPS6 KMT2E MDM4\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 TPT1 RPS12 RPL10 RPLP1 RPS3A RPS14 RPL28 RPS23 RPS15A RPL3 RPL30 RPL13A TMSB4X RPS6 RPS27 RPL18A RPL11 RPS19 RPS3 RPL23A RPL37 RPS13 RPS15 RPL5 RPL38 RPS9 RPL9 RPL39 RPS7 RPL6 VIM PTMA RPL14 RPL23 RPL29 RPL37A RPL36 RPS21 RPS20 NACA ACTB RPL22 HLA-A RPS24 RPS29 RPL27 RPL10A RPL31 RPSA RPL24 EEF1D HLA-E SARAF PTPRC STAT1 IKZF1 GBP5 GIMAP7 NEAT1 EMP3 HLA-B UBA52 RPS4Y1 EIF3E COX7C RNF213 NPM1 NAP1L1 PRRC2C CD3D H3F3A FYB1 HLA-C FTH1 CFL1 BTF3 PFDN5 HSP90AB1 GTF3A C12ORF57 EIF4B EIF1 STK17B SKP1 RPL36AL EEF2 ZFAS1 SP100 ARL4C EIF3K CCR7 YBX1 S100A11 PRMT2 IL32 GBP4 PRDX6 C9ORF16\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPS12 RPL13 RPL10 RPS14 RPS27 RPL28 RPL30 RPS23 RPS15A RPS19 RPS3 RPS3A RPL14 RPL13A RPL39 RPS15 RPS24 RPS6 RPS13 TMSB4X RPL18A PTMA RPL37 RPL29 RPL3 RPL37A RPL11 RPL23A RPL6 RPS9 RPL9 RPS20 RPS7 RPS21 RPL23 RPSA RPL22 RPL10A GIMAP7 RPL27 RPL31 RPL5 NACA RPL36 RPS29 LTB HLA-A UBA52 IL7R RPL38 RPL24 BTF3 ARHGDIB ACTB TXNIP LDHB ATP5MG ATP5F1E EIF1 NPM1 HSP90AA1 CCNI H3F3A SUMO2 IKZF1 H3F3B RPL36AL HINT1 VIM DDX46 ITM2B CCR7 JAK1 HLA-B PNRC1 UQCRB HLA-E MYL12A TOMM20 EEF1D STAT1 DDX5 SLFN5 REEP5 OST4 GSTK1 SNRPD2 UBE2D2 EEF2 HNRNPDL HLA-C HNRNPA2B1 SLC25A3 TNFAIP8 PPIB SERP1 LAMTOR4\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPLP1 RPS12 TPT1 RPL30 RPL10 RPS27 RPL28 RPS3 RPS23 RPS14 RPS3A RPS15A RPL11 RPL3 RPS19 RPL13A RPL29 RPS6 RPL9 RPL18A RPL37 RPL23 RPL23A RPS20 RPS29 RPL14 RPL39 RPS13 RPL5 RPS24 TMSB4X RPL36 RPS7 RPS15 RPL37A RPL31 RPS9 RPL24 RPL22 RPS21 RPL6 RPL10A RPSA PABPC1 PTMA LTB NAP1L1 UBA52 NACA GIMAP7 RPL27 EEF1D ITM2B SARAF HLA-B H3F3B ACTB STAT1 PTPRC ATP5MC2 RPL4 RPL38 PFDN5 HLA-A HSP90AA1 HLA-C PSME1 TXNIP FTH1 HNRNPC HLA-F RPL36AL LBH RPS4Y1 EMP3 SERF2 HINT1 RIPOR2 MGAT4A GPBP1 EIF3F CD3D SMAP2 HADHA H3F3A C12ORF57 BTF3 AES ANXA1 ATM COX7C XRN2 NPM1 GNAS ARHGDIB SLFN5 NOP53 CYLD\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TMSB4X TPT1 RPLP1 RPS12 RPL13 RPL28 RPL10 RPS19 RPS3A RPS14 RPS6 RPS27 RPL30 RPL29 RPL6 RPS15 RPS3 RPL13A RPS15A RPS23 RPL39 RPS13 RPL18A RPL3 RPL9 HSP90AA1 RPL5 RPS21 HLA-B RPL11 RPL37A RPS9 RPL23A RPL10A RPL37 ACTB RPL22 RPSA PTMA RPL14 RPS7 RPS20 RPL27 RPL23 VIM EEF1D HLA-A UBA52 HLA-C RPL38 RPS24 C12ORF57 BTF3 ITM2B RAN DDX5 HNRNPA2B1 RPL24 LDHB IL32 HINT1 CYTIP CD2 NPM1 ZFAS1 UQCRB HSP90AB1 RPL4 GBP2 KRAS NCL H3F3A LTB EEF2 MTDH STK17A YWHAB SERBP1 CDC42SE2 COX7C HLA-E FTH1 IL7R ATP5F1E HNRNPA3 PPP1R14B AKAP9 UBB JUND SARAF CD3D XRN1 PRRC2C ATP6V1G1 NAP1L1 SET YY1 ARF1 TARSL2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPS12 RPL13 RPLP1 TPT1 RPL10 RPS14 RPS27 RPL30 RPL28 RPL18A RPS23 RPS3A RPS19 RPS13 TMSB4X RPL37 RPS6 RPL11 RPS3 RPS21 RPL14 RPL3 RPL29 RPL13A RPL39 RPL37A RPL9 RPS15 RPL23A RPS15A RPS9 RPL6 RPL24 RPL5 LTB NACA RPL38 RPL36 PTMA RPS24 RPL23 RPS7 UBA52 RPL10A HLA-A RPL27 HLA-B RPS20 ACTB RPSA RPS29 RPL22 VIM PFDN5 SARAF HLA-C EEF1D CCR7 S100A6 RAC2 ITM2B PTPRC PABPC1 EIF4B STAT1 CD3D PSME1 NPM1 SRSF5 HNRNPA2B1 TAF1D RARRES3 SERF2 C12ORF57 NCL ZFAS1 HSP90AA1 RPL31 HLA-E CD2 RPS4Y1 CFL1 ARPC2 TOMM7 EIF1 ANXA1 COX6B1 HSP90AB1 COX7C UQCRB NOP53 ARHGDIB NDUFV2 FTH1 EMP3 ARL4C IL32 C9ORF78 LDHB\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPLP1 RPL13 RPS12 RPL30 RPS14 RPS3A RPS27 RPS6 RPL13A RPL28 RPL18A RPS15A RPL10 RPS23 RPS7 RPS13 RPS19 RPL11 RPL37A RPL3 RPL14 RPS24 RPL23 RPL9 TMSB4X RPL6 RPS20 RPL5 RPS9 RPL39 EIF1 RPL29 RPL37 RPS3 RPS15 IL7R RPL10A RPSA RPL23A VIM TXNIP UBA52 RPL38 HLA-B NEAT1 RPL27 RPS21 RPL24 H3F3B RPL31 RPL4 RPL36 NAP1L1 NACA PTMA EMP3 ETS1 NCL NDUFV2 SARAF FAM107B CD44 HLA-E GIMAP7 GTF3A HLA-A HLA-C RGCC RALA PRRC2C PFDN5 RPL22 FOXP1 CYTIP PABPC1 RPS29 RB1CC1 PGM2L1 ZFAS1 HNRNPA2B1 HNRNPA3 ELK3 CXCR4 SLC38A2 BTF3 ZNF267 HSP90AB1 PDCD4 SEPT7 MYB TAX1BP1 KIAA1551 KIF2A ACTR2 KTN1 ITM2B RPL36AL RAP1B\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 TPT1 RPLP1 RPS14 RPL28 RPL10 RPS12 RPL13A RPS3A RPL30 RPS27 RPS19 RPS23 RPS6 RPL23 TMSB4X RPL11 RPL6 RPS15A RPL14 RPL37 RPS13 RPS9 RPS3 RPS20 RPL9 RPL3 RPL22 RPS7 RPL39 RPL23A HLA-B RPS15 RPL5 RPL18A RPS29 RPL36 LTB RPL29 RPSA RPL37A PTMA RPL10A RPS24 UBA52 RPL24 RPL27 RPL31 RPS21 RPL38 NACA PTPRC VIM SARAF PABPC1 HLA-A NPM1 NAP1L1 YWHAB IL7R EIF3E FTH1 IL32 HSP90AB1 GIMAP7 HLA-C LDHB RPS4Y1 GYPC BTF3 MYL12A ACTB ATP5F1E PNN HNRNPU C12ORF57 GBP4 STK17A STAT1 RABAC1 RPL36AL PNRC1 COMMD6 ARL6IP5 HLA-E YBX1 TXNIP PNISR ANKRD11 H3F3A AES RIPOR2 S100A6 H3F3B ARGLU1 PFDN5 KMT2A TOMM7 ARPC2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPLP1 RPS12 RPL13 RPL10 RPS14 RPL28 RPS27 RPS3A RPL30 RPL11 RPS3 RPS19 RPL13A RPS23 RPL3 RPS6 RPL9 RPL18A RPS20 RPS13 RPL5 RPS15A RPL29 RPL39 RPS15 RPS7 RPL14 TMSB4X RPL23A IL7R RPL6 RPL23 RPL10A RPS21 RPL37 RPS24 RPS29 NACA RPL27 RPS9 UBA52 RPL36 RPL37A LTB RPL38 PTMA RPL31 RPL22 PABPC1 SARAF ACTB HLA-A HLA-B PFDN5 CCR7 RPL24 IL32 RPSA GIMAP7 HLA-C RPL4 EIF3E YBX1 HINT1 UQCRB FYB1 KMT2A C12ORF57 BTF3 RPS4Y1 NAP1L1 ITM2B LEPROTL1 DEK ATM FCER1G VIM NOP53 ARHGDIB LDHB S100A6 GTF3A HNRNPA2B1 SERBP1 EEF1D AES FTH1 TOMM7 PPIA ATP5F1E NPM1 PTPRC EEF2 HSP90AA1 EIF1 TCF7 SYNE2 CFL1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPS12 RPLP1 TPT1 RPS14 RPS27 RPS3A RPL10 RPL30 RPS23 RPS13 RPS3 RPS6 RPS15A RPL18A RPS19 RPL11 RPL28 RPL3 RPL13A RPL39 RPS21 RPS24 TMSB4X RPL29 RPS15 PTMA RPL37 RPS20 RPL37A RPL23A RPL23 RPL5 RPL9 RPS29 RPL10A RPL14 RPL24 RPS9 RPL6 GIMAP7 LTB RPL36 UBA52 RPL27 RPL38 RPL22 RPSA NACA UQCRB RPS7 HLA-E EEF1D RPL31 IL7R HLA-C HMGB1 BTF3 SARAF FYB1 HLA-A HLA-B PNISR NPM1 TOMM7 ATP5F1E DDX5 VIM TRAF3IP3 PPIA EIF1 HINT1 SLC25A6 EMP3 HNRNPA2B1 COX7C KIAA1551 ACTB NEAT1 SLC38A1 DDX21 NOP53 RPL4 SNRPD2 H3F3A RIPOR2 PDE3B SERF2 IL32 CD48 EIF4A2 YWHAB ITM2B PTPRC S100A6 PABPC1 FAM107B EIF3K GIMAP8\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS12 RPL13 TPT1 RPL10 RPS14 RPL11 RPS27 RPS3A RPL37 RPL28 RPS19 RPS23 RPS3 RPL30 RPS6 RPL13A RPL3 RPS13 RPS15A RPL39 TMSB4X RPL9 RPL37A RPL6 RPS9 RPL24 RPL18A RPS15 RPL29 RPS24 RPSA RPL14 RPL23 RPL5 RPS20 RPS7 GIMAP7 PTMA RPL23A RPL22 RPS29 NACA RPL10A HLA-B UBA52 RPL27 EEF1D PTPRC RPL31 RPL36 RPS21 RPL4 RPL38 RPL36AL UQCRB ARPC2 SARAF PDE3B PABPC1 NPM1 PFDN5 VIM HINT1 STK17A IL7R TOMM7 BTF3 HLA-A EIF1 HNRNPA2B1 HSP90AA1 STAT1 ATP5F1E LDHB ACTB LTB COX7C SERP1 GNAS BCLAF1 CCNI SKP1 ITM2B RGS10 PRPF4B NOP53 SET COX7A2 FYB1 NELL2 EEF2 ARL4C UBXN1 SLFN5 IL32 NDUFV2 GTF3A PSMB9\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPS12 RPL13 RPLP1 TPT1 RPS23 RPS3 RPL10 RPS14 RPS3A RPL28 RPS19 RPL11 RPL13A RPS6 RPL30 RPS13 RPS27 RPL3 RPL37 RPL18A RPL10A RPS20 RPL9 RPS15A RPL37A RPS15 RPL29 TMSB4X RPL39 RPL23 RPS7 RPS21 RPL6 RPL23A RPL5 PTMA RPS29 RPL38 RPS9 RPL14 RPL22 NACA RPL27 LTB RPSA HLA-B RPL36 RPS24 NAP1L1 RPL24 UBA52 BTF3 RPL4 PTPRC KIAA1551 RPL31 EMP3 IL7R HLA-A NOP53 COX7C HSP90AB1 EEF1D CALM1 EEF2 HINT1 LDHB FTH1 HSP90AA1 RAC2 TOMM7 GIMAP7 ARL4C RIPOR2 RPS4Y1 SET ACTB S100A6 CD3D PNRC1 EIF4A2 H3F3A ITM2B GNAS PFDN5 EIF1 COMMD6 PABPC1 CCR7 EIF4B TXNIP HLA-E ARPC2 UQCRB H3F3B CD3E EPHA1-AS1 ATP5F1E PPIA\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPS12 RPLP1 RPL10 TPT1 RPS14 RPS23 RPL30 RPS27 RPS15A RPL28 RPS3A RPS6 RPL11 RPS19 RPS3 RPL13A RPS13 RPL18A RPL23A RPL29 RPL14 RPL3 RPL9 RPL37 RPL39 TMSB4X RPS15 RPS9 RPS7 RPS21 RPL5 RPS24 RPL23 PTMA RPL37A RPS20 RPL22 RPL27 RPL36 RPS29 RPL10A UBA52 RPL24 RPL31 RPL6 HLA-B RPL38 NACA PABPC1 RPSA PTPRC EEF1D SARAF HINT1 FTH1 LTB HLA-C TOMM7 EIF1 HLA-A ITM2B STAT1 RPL4 NAP1L1 GIMAP4 HLA-E IL7R EEF2 NPM1 COX7C RPL36AL H3F3A GBP2 SMAP2 COMMD6 N4BP2L2 IKZF1 LINC00861 SEPT6 UQCRB PNRC1 CD48 EIF3K EIF3F PFDN5 FYB1 EMP3 GIMAP7 PNISR AES IL32 CCNI CD2 CD44 ATP5F1E CD3D LDHB GYPC\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPS12 RPLP1 TPT1 RPS14 RPL10 RPS27 RPS23 RPL11 RPL28 RPS6 RPS3A RPL3 RPL13A RPS3 RPL30 RPS19 RPS15A TMSB4X RPL9 RPL18A RPL29 RPS13 RPS9 RPL39 RPL37A RPS15 RPL5 RPS7 RPL37 RPS21 RPL10A RPL23 RPL14 UBA52 RPS20 RPSA RPL36 RPL6 HLA-B RPL23A RPS24 RPS29 RPL31 RPL24 RPL27 PTMA NACA HLA-A VIM RPL38 LTB KIAA1551 RPL22 CALM1 PFDN5 S100A6 RPL4 ACTB HLA-C HINT1 PABPC1 S100A4 ITM2B EMP3 EEF1D SARAF GIMAP7 ARL4C TOMM7 NOP53 ISG20 CD3D GNAS PTPRC NAP1L1 SERF2 SYNE2 H3F3B NEAT1 HSP90AA1 IL7R UQCRB CCR7 CDC42SE2 HNRNPA2B1 FYB1 EEF2 RPS4Y1 C12ORF57 SLC25A6 EIF3E HMGB1 ANXA1 PPIA ATP5MG SON CYBA ETS1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS12 TPT1 RPL13 RPL10 RPS3A RPS14 RPL30 RPS27 RPS3 RPL11 RPL28 RPL13A RPS13 RPL9 RPS19 RPL29 RPL14 RPL18A RPS29 RPS6 RPL37 RPS20 RPS15A RPS15 RPL3 RPS23 RPL5 RPL37A RPL39 RPS21 RPL23A RPS9 TMSB4X UBA52 NACA RPL27 RPL23 RPS24 RPL24 RPS7 RPL38 RPL6 HLA-B VIM RPSA RPL22 RPL36 RPL10A PTMA RPL31 HINT1 ITM2B TOMM7 ARGLU1 COMMD6 NPM1 PDCD4 LTB CCR7 PTPRC HLA-A GIMAP7 SARAF NEAT1 IL7R RPS4Y1 ATP5F1E CCNI TXNIP HNRNPA2B1 EIF1 CALM1 DDX5 LDHB HNRNPDL PNISR G3BP2 HSP90AA1 GTF3A EEF2 PRRC2C CD3D GCC2 RPL4 H3F3A EIF4A2 ARPC2 HNRNPU RPL36AL PFDN5 SON PBXIP1 CYBA RPS27L CFAP36 SP3 SLFN5 PSIP1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPL13 RPS12 RPLP1 RPL10 RPL13A RPL28 RPL30 RPS27 RPS14 RPL18A RPS3A RPS23 RPS3 RPL11 RPS15A TMSB4X RPS6 RPL23A RPS13 RPL3 RPS7 RPS15 RPS19 RPL37 RPS20 RPS21 RPL9 RPL6 RPL37A RPL39 NACA RPL14 RPL5 RPL38 RPL23 RPS9 RPS24 RPL29 HLA-B RPL36 RPL10A RPL22 PTMA RPL27 RPSA STAT1 LTB RPL31 RPS29 PABPC1 RPL24 UQCRB GIMAP7 UBA52 HLA-A PFDN5 SET HINT1 C12ORF57 GBP2 BTF3 NAP1L1 RPL4 PTPRC IL32 YBX1 EIF1 GBP4 S100A6 ATP5MG GAPDH VIM RPL36AL NPM1 ATP5F1E IL7R SARAF SERF2 H3F3A HSP90AB1 ATM CD3D HMGB1 ITM2B MRPS6 COX7C YWHAB EEF2 CD48 ACTB GIMAP4 GBP1 DDX5 TOMM7 EIF3K PDE3B HLA-C ZNF131\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPS12 TPT1 RPLP1 RPL10 RPS14 RPS3A RPL13A RPL30 RPS27 RPS23 RPL28 RPS6 RPL11 RPL37 RPL39 RPS15A RPS19 RPL3 RPL23 RPS13 RPS9 RPL18A RPS20 RPS3 TMSB4X RPL23A RPL9 RPL5 RPL29 RPL37A RPS15 RPS29 RPS24 RPL14 RPS21 RPSA RPS7 PTMA RPL6 RPL24 RPL38 RPL36 NACA RPL10A UBA52 RPL22 ITM2B H3F3A PTPRC GIMAP7 EEF1D RPL31 PFDN5 NOP53 RPL4 TXNIP HSP90AA1 RPL27 HLA-B EIF3E PPIA COMMD6 EMP3 HLA-C NPM1 LTB CD3E AKAP9 HLA-E TOMM7 EEF2 PNRC1 RPS4Y1 HMGB1 ATM EIF1 GMFG LUC7L3 PABPC1 ARPC2 IL32 ACTB LDHB FYN ATP5F1E CD8B GTF3A HNRNPA2B1 UXT AES NAP1L1 CALM1 SNHG8 CD48 ZFAS1 CCR7 LBH LEF1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPLP1 TPT1 RPS12 RPL10 RPS3A RPL28 RPS14 RPS23 RPS27 RPL13A RPS13 RPS15A RPL30 RPS3 RPS6 RPL11 RPL37A RPL3 RPL9 TMSB4X RPS19 RPL39 PTMA RPL18A RPS20 RPL37 RPS21 RPS15 LTB RPL14 RPS7 RPL6 RPL10A RPL29 RPL23 UBA52 RPS24 RPL27 RPS29 RPL24 RPSA RPS9 RPL22 RPL38 HLA-A NACA BTF3 RPL36 IL7R VIM ACTB RPL31 HLA-B HLA-C HSP90AB1 EEF1D NPM1 SARAF HINT1 RPL23A RPL5 PABPC1 STAT1 CFL1 NAP1L1 PFDN5 GIMAP7 TOMM7 SERF2 CORO1A PTPRC COX7C S100A6 EIF3E ATP5F1E GTF3A EIF1 PLP2 FTH1 PNRC1 PPIA COX6C APRT SLC25A3 IL32 YBX1 CD48 ITM2B RPL36AL H3F3A CDC42SE2 TRAF3IP3 ANAPC16 ETS1 HNRNPA2B1 RSL24D1 RBM25 SEPT7\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPL10 RPLP1 RPS12 RPS23 RPS14 RPL30 TPT1 RPS3A RPL13A RPL28 RPS27 RPL11 RPS6 RPS13 RPL18A RPL39 RPS15A RPL3 RPS24 RPS3 RPS19 RPL5 RPS21 RPS7 RPL37 RPS15 RPL14 RPL37A TMSB4X RPL29 RPL6 RPS20 RPL9 RPS29 RPL23A RPL23 RPS9 RPSA LTB PTMA RPL38 UBA52 RPL36 RPL10A RPL24 RPL4 RPL22 RPL31 NACA RPL27 HLA-B BTF3 GIMAP7 EIF3H HLA-A NPM1 LDHB ACTB PABPC1 HSP90AB1 ATP5F1E TOMM7 EIF1 HLA-E HSP90AA1 EEF1D HINT1 PFDN5 NCL CFL1 SARAF ITM2B UQCRB RPL36AL ANP32B EIF4B HLA-C FTH1 FYB1 COX7C LUC7L3 IL32 PTPRC SERF2 C12ORF57 CCNI VIM GIMAP4 OST4 SLC25A6 EZR H3F3B EMP3 PNRC1 CIRBP BIRC3 MRPS6 NOP53\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPL10 TPT1 RPS12 RPLP1 RPL28 RPS14 RPS23 RPS3A RPL30 RPL18A RPS13 RPL11 RPS19 RPL37 RPS7 RPS3 RPL13A RPL14 RPS15A TMSB4X RPL3 RPS27 RPS6 RPL39 RPL6 RPL5 RPL23 RPL9 RPL23A RPS21 RPS15 RPS24 RPL10A HLA-B RPL37A RPSA RPS9 NACA RPL29 UBA52 HLA-C RPS29 RPS20 GIMAP7 RPL36 RPL24 EEF1D ACTB PTMA RPL22 PFDN5 FTH1 NOP53 VIM LDHB SARAF RPL38 HINT1 PTPRC GAPDH HNRNPA2B1 RPL27 BTF3 IL7R H3F3A EEF2 IL32 HLA-A EIF1 EDF1 GNAS RPS4Y1 RPL31 NCL HSP90AA1 EMP3 SET SF3B1 NPM1 ITM2B EIF2S2 HSP90AB1 FYB1 CIRBP RNF213 NAP1L1 LTB GYPC THRAP3 ZNF131 SERF2 CAST UBC SYNE2 CD2 RPL4 CYBA HNRNPU\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS12 RPL13 RPL10 TPT1 RPS27 RPS23 RPS3A RPS3 RPS14 RPL28 RPL30 RPS15A RPL18A RPS13 RPL39 RPL11 RPL14 RPL10A RPS6 RPS15 RPL3 RPS21 RPL9 RPL13A RPS9 RPL29 RPL37 RPS29 RPS19 RPL36 RPL38 RPS24 RPL37A RPL5 RPL23A RPSA RPL23 RPS20 RPL6 NACA TMSB4X PTMA RPL22 RPS7 RPL27 UBA52 RPL24 HLA-B PFDN5 RPL31 TXNIP ATP5F1E PABPC1 NAP1L1 HLA-A HINT1 CALM1 RPL36AL PTPRC SARAF C12ORF57 ACTB RGS10 EEF1D FTH1 LTB EEF2 HSP90AB1 TOMM7 SERF2 BTF3 RPL4 FKBP2 GIMAP7 VIM FYB1 COX7C PTGES3 CD48 H3F3A KTN1 EIF3M HNRNPA2B1 SLC25A6 GTF3A HLA-C EIF1 TRIR CD37 POLR1D KIF2A SMAP2 LDHB MRPS21 DDX6 ZFAS1 CORO1A AES\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS12 RPL13 TPT1 RPL10 RPS14 RPS3A RPS23 RPS6 RPL18A RPL11 RPL30 RPS27 RPL28 RPL37 RPS19 RPL3 RPL13A RPS13 RPL39 RPS3 RPL9 RPS15A TMSB4X RPS7 RPL29 RPL37A RPL6 RPL5 RPL10A RPS15 RPS20 RPS21 RPL23A RPL14 PTMA RPSA RPS9 NACA RPL23 RPL36 RPL38 RPS29 UBA52 RPL27 RPS24 PABPC1 RPL31 HLA-B GIMAP7 RPL24 PTPRC EIF1 LTB RPL22 EEF1D NCL CALM1 HLA-A RPL4 LDHB HSP90AB1 STAT1 HNRNPA2B1 EIF3E HLA-C BTF3 DDX5 SERF2 FTH1 IL32 PRRC2C ATP5MG RPL36AL COMMD6 GYPC HINT1 IL7R UQCRB TOMM7 YBX1 ACTB RBBP6 PAK2 CD3G NOP53 FOXP1 TRAF3IP3 SLC25A6 SARAF VIM ARPC2 COX7C SRRM2 CCR7 SNHG8 ETS1 NDUFV2 ATXN7L3B\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 RPS12 RPL10 TPT1 RPS23 RPS3A RPS19 RPS14 RPL30 RPS27 RPL28 RPS15A RPL13A RPL11 RPL37 RPS13 RPS3 RPS6 RPL3 RPL5 RPL18A RPS15 RPL23A RPL9 RPL39 RPL14 RPS7 TMSB4X RPL37A RPS9 RPL24 RPL10A RPL29 RPS20 NACA PTMA UBA52 RPS24 RPL27 RPL38 RPL6 RPS29 RPL36 RPL22 HLA-B RPS21 RPSA GIMAP7 RPL23 ITM2B LTB RPL31 COX7C HINT1 PFDN5 EEF1D ACTB STAT1 NEAT1 TOMM7 SYNE2 HLA-C HSP90AB1 PTPRC BTF3 CD8B NDUFV2 YBX1 YWHAZ CD2 HLA-E DEK PABPC1 PNRC1 RPS4Y1 TNFAIP8 IRF2 SLC25A6 LDHB HLA-A FTH1 STK17A DDX5 STK17B S100A6 GBP5 MPHOSPH8 HNRNPA2B1 C4ORF3 GNAS PARP9 IKZF1 CCNI CD37 C9ORF78 PRRC2C PPIA TCF7\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 TPT1 RPLP1 RPS12 RPS14 RPL10 RPS3A RPS13 RPS27 RPS19 RPS15A RPL30 RPL28 RPL5 RPS6 RPS23 RPL3 RPS3 RPL29 RPL11 RPL39 RPL13A RPS15 RPL18A RPL9 RPL37 RPL23A RPL6 RPL14 TMSB4X RPS7 RPL37A RPS9 PABPC1 LTB RPS24 PTMA RPS29 RPL23 RPL24 RPSA EEF1D RPS20 RPS21 RPL22 VIM RPL10A RPL27 IL7R UBA52 NACA RPL36 HLA-B PTPRC NPM1 FTH1 SET PFDN5 RPL38 ACTB HLA-A RPL4 PNRC1 RPS4Y1 PDE3B GIMAP7 COX7C ARL4C S100A6 H3F3A HLA-C RPL31 SNHG8 EIF3E ATM CD3E ZNF721 HNRNPA2B1 C6ORF48 HINT1 IKZF1 EEF2 C12ORF57 EIF1 SNHG7 YBX1 DGKA TTC3 CD37 SRSF7 SRRM2 JPX CALR UBB SP100 TAF7 ANKRD11 NOP53 SERP1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPL13 RPLP1 RPS12 RPL10 RPS3A RPS14 RPS27 RPS3 RPL30 RPS6 RPS15A RPL13A RPL3 RPL18A RPL28 RPL11 RPL37 RPS19 RPS23 RPS13 RPS20 RPL37A RPS15 RPS24 TMSB4X RPS21 RPL39 RPL14 RPL6 RPL23A RPL9 RPS7 RPL29 RPS9 PTMA UBA52 RPL5 RPL24 RPSA RPL36 RPL10A RPL23 RPL38 RPL22 RPS29 LTB NACA RPL27 RPL31 ACTB PABPC1 HSP90AB1 PTPRC H3F3A RPS4Y1 PFDN5 EEF1D IL32 HLA-C COX7C EIF1 HLA-B HINT1 IL7R HLA-A NPM1 SERF2 ITM2B PPIA NEAT1 PRRC2C CD48 PNISR RPL4 VIM GTF3A CALM1 GIMAP4 GIMAP7 ATP5F1E EIF3E FYB1 CDC42SE2 IKZF1 UXT SLC25A6 YBX1 ARPC2 SERBP1 HSP90B1 AES TOMM7 BTF3 HNRNPA2B1 LRRFIP1 SLC25A3 EEF2 APRT\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 TPT1 RPLP1 RPL10 RPS12 RPL28 RPS14 RPS27 RPS3 RPL3 RPL30 RPS3A RPL13A RPL11 RPS19 RPL37 RPS15A RPS23 RPL14 RPL9 RPL5 RPL18A RPS13 RPS6 RPL29 RPS15 TMSB4X RPL39 LTB RPS20 RPS21 RPL24 RPSA RPL23 RPS9 RPL37A RPL23A RPS7 RPL6 RPL38 RPL31 UBA52 RPL36 PTPRC PTMA RPL27 NEAT1 HLA-A RPS29 GBP1 NACA HSP90AB1 GIMAP4 GIMAP7 RPS24 KIAA1551 COMMD6 IL32 CD2 RPL10A HLA-B IL7R HNRNPA3 SARAF HLA-C RPS4Y1 NAP1L1 RPL22 BTF3 NPM1 GTF3A NOP53 SERP1 PABPC1 HINT1 GAPDH EIF1 CD55 CFL1 ACTB TMEM123 HNRNPU ETS1 ATM NDUFV2 SYNE2 SNRPD2 VIM S100A6 LDHB H3F3A DDX5 HLA-E PPIA SET CASP8 LCP1 UBXN1 ATP5F1E\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS12 RPL13 TPT1 TMSB4X RPS3A RPL10 RPS27 RPS14 RPL18A RPS23 RPS3 RPS19 RPS13 RPL28 RPL11 RPS6 RPL23A RPL37 RPS15A RPL3 HLA-B PTMA RPS21 RPL30 RPS15 RPL13A RPS24 RPL39 RPS29 RPL37A RPL36 RPL22 RPL9 RPS7 RPL29 RPL38 RPS20 RPL24 UBA52 RPL27 RPS9 RPL5 RPL6 NACA RPSA RPL4 RPL23 RPL14 BTF3 ACTB STAT1 HLA-A PSME1 HSP90AB1 NEAT1 SYNE2 PFDN5 LTB SMCHD1 RPL10A EEF1D ARL4C CFL1 GIMAP7 RBX1 SERF2 EMP3 HNRNPA2B1 HINT1 GTF3A GIMAP4 CORO1A GBP5 N4BP2L2 CASP8 SARAF FTH1 IL32 EEF2 CCR7 GMFG MYL12B ATP5F1E ARHGDIB NOP53 GBP1 NCL EIF3K VIM EIF5A EIF1 RPL31 UBB OST4 PTGES3 PPIA HNRNPC CALM1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL10 TPT1 RPS12 RPS14 RPL13 RPS3A RPS27 RPS23 RPL11 RPL28 RPS19 RPL13A RPL18A RPS3 RPL30 RPS13 RPL37 RPL39 RPS15A RPS6 PTMA RPS9 RPL9 RPS15 RPS24 RPL29 UBA52 RPL5 RPSA RPL23A RPL36 RPL3 RPL37A RPL22 RPL24 NACA RPS20 RPS21 TMSB4X HLA-B RPL38 RPL6 RPS29 RPL14 RPL10A LTB RPL23 BTF3 RPS7 ACTB RPL31 RPL27 HINT1 GIMAP7 PTPRC HLA-A LDHB HLA-E CD48 PSME1 HSP90AB1 RPL36AL PPIA PARP14 GBP4 STAT1 PFDN5 ITM2B CALM1 CD2 NOP53 SUMO2 RPL4 NPM1 SARAF IL32 EEF1D GBP5 DDX46 NCL ARID4B BTN3A2 CD37 PABPC1 NEAT1 TGFBR2 RARRES3 RGS10 TOMM20 CD3E H3F3A OST4 GBP2 EMP3 CD3G GBP1 HSPD1 SRSF7\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPS12 RPLP1 TPT1 RPL13 RPL28 RPL10 RPS14 RPS27 RPS23 RPL30 RPL11 TMSB4X RPS3 RPL3 RPL14 RPL13A RPS3A RPS19 RPS6 RPS15A RPL37A RPL18A RPL23 RPL9 RPS20 RPL39 RPS15 RPL37 RPS21 RPS13 PTMA RPS9 RPL23A RPL5 RPL29 RPS29 HLA-B ITM2B S100A6 UBA52 RPSA RPL24 RPL10A RPS24 RPL6 NACA RPL22 RPL27 RPS7 CALM1 NEAT1 PFDN5 VIM HNRNPA2B1 HSP90AB1 EIF1 PPIA HLA-A CD3D RPL36 BTF3 RPL38 SARAF EIF3H HLA-C PTPRC EEF2 LEPROTL1 HSP90AA1 CDC42 LTB H3F3A PABPC1 SUMO2 RPL31 RPL4 YWHAB IL7R ATP5MG ACTB SERP1 CCR7 FTH1 FXYD5 SRRM2 GIMAP4 SET SRSF7 EMP3 N4BP2L2 JAK1 EIF5 CD44 SF1 GTF3A CCNI RGS10 C12ORF57 EIF3G\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPS12 RPLP1 RPL13 TPT1 RPL10 RPS14 RPL28 RPS3A RPL30 RPL11 RPS23 RPS19 RPS3 RPL18A RPS27 RPS15A TMSB4X RPL39 RPL13A RPL3 RPS6 RPS13 RPL9 RPL23A RPL37 RPSA RPL14 RPL5 RPS24 RPS15 RPL6 RPS21 RPL29 RPL23 RPL10A RPS20 RPL36 RPL37A RPS9 UBA52 LTB RPL22 RPS29 RPS7 PTMA RPL24 HLA-B VIM RPL27 RPL38 NACA EEF1D HLA-A PNRC1 ACTB NPM1 YBX1 PABPC1 RPL31 BTF3 HLA-C NOP53 ATP5F1E HINT1 NAP1L1 HSP90AA1 SARAF ITM2B RPS4Y1 IL32 EIF1 CFL1 H3F3B EEF2 PFDN5 EMP3 GTF3A HNRNPA2B1 S100A6 COX7C HSP90AB1 S100A10 ARL4C PTPRC HNRNPDL RPL4 STAT1 SNRPD2 CALM1 MYL12A RPL36AL PPIA GAPDH SMCHD1 TXNIP GIMAP4 FTH1 IL7R UQCRB\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPS12 RPL13 RPL10 RPS14 RPS19 RPS3A RPS23 RPL28 RPS6 RPS3 RPS27 RPS15A RPS13 RPL30 RPL18A RPL14 TMSB4X RPL11 RPL37A RPL13A RPL3 RPS20 LTB RPL9 RPL39 RPL37 RPS21 RPL23A RPS24 RPL23 RPS9 RPS29 RPSA RPS7 HLA-B RPL5 RPL36 RPL6 RPL27 ACTB RPL10A RPL22 HLA-A RPL31 RPL29 NACA PTMA RPL38 UBA52 RPS15 TOMM7 H3F3A HLA-C VIM IL7R UQCRB RPL4 YBX1 S100A6 SET IFITM2 PPIA RPL24 EIF1 PABPC1 RPL36AL NOP53 GBP2 ARL6IP5 ITM2B CORO1A APRT EMP3 GIMAP7 GBP4 PNRC1 GBP1 COX7C MRPS6 BTF3 FAM133B RPS4Y1 SLC38A1 S100A4 IKZF3 SKP1 COX7A2 YWHAB CFL1 EEF1D UBC LUC7L3 LDHB HSP90AB1 CNBP COX8A C1QBP\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 STAT1 FUS HLA-B PNN PTMA TRIM56 HNRNPU MACF1 ZMYND8 NEAT1 GOLGB1 GSE1 PHIP ANAPC5 ARID1B RIPOR2 NPM1 MSI2 KIAA1551 THUMPD3-AS1 CELF2 NKTR RAP1B HSP90AA1 BOD1L1 SET RPS19 PRKG1 RPS13 ACTB NUP107 SCAF11 TMSB4X ZFP91 RPS27 HMBOX1 PSMB9 TRIM44 RPS21 SPN PNISR HSP90B1 HNRNPA2B1 ACIN1 RPLP1 BCL11A SOS1 CREBZF ARNTL2 STK4 TPT1 ZFR RPS12 PTP4A2 CDK6 CLIP1 PRRC2C POLE STX7 WNK1 ATAD5 SYNC PTCD3 MARCH1 NUCKS1 SF3B2 MDM4 RPSA MPHOSPH8 PHACTR4 ZNF431 CDK13 THOC2 RPL36 SUGT1 GCNT2 RBM33 DEK SUPT3H RUNX1 UIMC1 GNL1 ABCC4 MLH3 EIF2S2 ARMC8 RTN4 MAST4 MIAT ZNHIT6 ZNF644 C19ORF66 HLA-A EZH2 KDM4B CBX1 ZEB2 FAM91A1 CLK4\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPLP1 RPS12 TPT1 RPL10 RPS14 RPL13A RPL28 RPS19 RPL37 RPS3 RPL30 RPS6 RPS3A RPS27 RPS15A RPL3 RPS15 RPL11 RPS23 RPL18A RPL5 RPS13 RPL9 RPL29 RPS20 RPL37A RPL36 RPL14 RPL39 RPL22 RPS21 RPL23A RPS9 RPSA RPL24 TMSB4X HLA-B RPS7 RPS24 UBA52 RPS29 RPL6 RPL23 RPL10A RPL38 NACA PABPC1 HINT1 PTMA S100A6 VIM RPL31 PTPRC ACTB LTB RIPOR2 GIMAP7 NAP1L1 RPL27 LDHB ITM2B LUC7L3 EMP3 BTF3 HNRNPU NEAT1 EIF1 NPM1 TOMM7 TXNIP IL32 HLA-A H3F3B FXYD5 PFDN5 CALM1 ANKRD11 RAP1B ARHGDIB EEF1D RPS4Y1 FTH1 S100A4 SLC25A6 ATP5F1E RPL36AL EZR ZFAS1 EEF2 LINC00861 COX6B1 ATP5MG HSP90AA1 NOSIP SARAF LEF1 UXT ARPC5\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPLP1 RPS12 RPS14 RPL10 TPT1 RPS3A RPS27 RPS6 RPL28 RPS3 RPS23 RPL11 RPL13A RPS13 RPS19 RPL3 RPL30 RPS15A RPL18A RPS9 RPL39 RPL29 RPL37A RPS21 RPL14 TMSB4X RPL23A RPS15 RPL9 RPS7 RPL37 RPL10A RPS20 UBA52 RPL5 RPL23 RPL6 RPSA RPL31 RPS24 RPS29 RPL36 LTB RPL24 RPL22 HLA-B RPL27 PTMA NACA RPL38 HSP90AA1 IL7R PABPC1 CALM1 HINT1 PTPRC NPM1 LDHB PNRC1 BTF3 HNRNPA2B1 CCR7 MGAT4A HLA-A RPL4 CD48 SARAF IL32 GCC2 TOMM7 TXNIP RIPOR2 EEF1D PSME1 PRRC2C ITM2B EIF1 COX7C UBB GIMAP7 NEAT1 AES FTH1 C12ORF57 GIMAP4 FYB1 UXT COX6C ARPC2 HMGB1 C6ORF48 NDUFV2 PFDN5 DDX5 GBP2 SERF2 CD2 EIF3K\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL10 RPS12 RPL13 TPT1 RPS14 RPS3A RPL11 RPL30 RPL28 RPS23 RPL18A RPS3 RPS19 RPS27 RPS15A RPL13A RPS13 RPS6 RPL37 RPL3 RPS7 TMSB4X PTMA RPL39 RPL10A RPS21 RPS15 RPL14 RPL9 RPL6 RPL5 RPL23A UBA52 RPL23 RPL29 RPSA RPL27 RPS20 RPL37A RPL24 RPS9 HLA-B RPL36 HLA-C RPL22 RPS29 NPM1 RPS24 NACA RPL38 HSP90AB1 PTPRC PABPC1 IL32 HLA-A TOMM7 HINT1 RPL31 CD48 EIF1 GIMAP4 PFDN5 NOSIP BTF3 GIMAP7 ITM2B PRRC2C PSME1 LDHB SERF2 ATP5MG NCL NAP1L1 CFL1 RIPOR2 DDX5 RPL4 LBH NDUFV2 HLA-E TRIR GTF3A EDF1 ATP5F1E RPL36AL SARAF FTH1 RNF213 EEF1D MYL12A YBX1 CD3E GBP5 PPIA SLC25A5 SNHG7 CCR7 CALM1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPS12 RPL13 RPL10 RPLP1 RPS27 TPT1 RPL28 TMSB4X RPS14 RPL11 RPL23A RPL30 RPS23 RPS15A RPS3A RPS24 RPL39 RPS13 RPS3 ACTB RPL37 RPL13A RPS21 RPS19 RPS15 RPL6 RPS6 RPL18A RPL5 RPS20 RPL22 RPL14 PTMA RPL9 RPL23 RPL29 RPL3 RPL37A RPS9 RPL27 RPS7 RPL36 RPSA HLA-B RPS29 UBA52 RPL24 RPL31 S100A6 LTB HSP90AA1 EIF1 RPL10A RPL38 EEF2 NACA COX7C PFDN5 NCL ID3 SARAF GBP2 BTF3 CORO1A RPL4 GIMAP7 HINT1 AES CD3D VIM UQCRB ITM2B MRPS6 ATP5F1E GAPDH SLC25A6 CD48 YBX1 HSP90AB1 KIAA1551 PSME1 PABPC1 IL32 SRRM2 EMP3 TRIR HLA-C EIF4B PTPRC FTH1 HNRNPA3 PSMB9 ATXN7L3 KIF2A RPL36AL ARPC2 DDX5 HLA-A EIF4G2\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL10 RPL13 RPS12 TPT1 RPS3A RPS14 RPS27 RPL28 RPS23 RPS15A RPS19 RPL11 RPL30 RPS3 RPL37 RPL13A RPL3 RPS13 RPS6 RPL29 RPL39 PTMA RPS15 RPL18A RPL5 RPS20 TMSB4X RPL14 RPL23A RPS21 RPL9 RPL37A RPS7 UBA52 RPS9 RPL36 RPL10A NACA RPS24 RPL22 RPL27 RPS29 RPSA HLA-A RPL6 GIMAP7 RPL24 RPL23 HLA-B RPL38 CCR7 ACTB EEF1D H3F3A HLA-C SARAF FTH1 LDHB LTB RPL31 NPM1 HSP90AB1 EIF1 PABPC1 ATP5MG PTPRC HINT1 ITM2B RNF213 GIMAP4 SRRM2 IL7R IL32 NOP53 BTF3 S100B GNAS GAPDH CALM1 HMGB1 RPS4Y1 EMP3 CALR TRAF3IP3 EEF2 PCBP2 PNISR HLA-E PPIB PPIG KIF2A RPL36AL RANBP2 CD48 UQCRB HSPA9 ARPC2 ATP5F1E\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPL10 RPS12 RPL13 RPLP1 RPS14 RPL13A RPL11 RPS23 RPS3A RPS6 RPL28 RPS19 RPL3 RPS13 RPL9 RPS15A RPS3 RPL37 RPL30 RPS27 RPL18A RPS15 RPL6 RPL14 RPL23 TMSB4X RPS20 RPL29 RPL5 RPL37A RPL39 RPS9 RPL10A RPS7 NACA RPL36 IL7R RPL24 RPL22 RPL23A RPL38 RPS21 RPL27 UBA52 PABPC1 RPS24 HLA-B HLA-A RPS29 PTMA PTPRC PFDN5 ITM2B RPL31 STAT1 H3F3A HLA-C RPSA LDHB HNRNPA2B1 ARHGDIB ACTB PNRC1 HLA-E CD3D EEF1D RPL4 GIMAP7 HINT1 FYB1 GBP4 EEF2 ARL4C COX7C FXYD5 GIMAP4 CCR7 BTF3 PDE3B TXNIP YWHAB FTX KIAA1551 LTB NAP1L1 ARPC2 SP100 NPM1 EIF4A2 RARRES3 ABRACL UQCRB RPL36AL ATM UBE2D3 SRRM2 GIMAP1 AES\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPL13 RPS12 RPL10 RPS14 RPL13A RPS27 RPS23 RPS3A RPS6 TMSB4X RPL11 RPL28 RPL30 RPL3 RPS3 RPL18A RPL37A RPS13 RPL9 RPS15A RPL5 RPS19 RPL37 RPL6 RPL23A PTMA RPS7 RPS21 RPL14 RPS15 HLA-B RPL39 RPS9 RPS24 RPL29 RPL10A UBA52 RPL22 S100A6 NACA RPSA RPL27 IL7R RPS20 RPL23 LTB RPL31 RPL24 VIM RPS29 RPL36 HLA-A EIF1 HLA-C RPL38 EMP3 ACTB CFL1 PFDN5 RPL4 JUND SARAF H3F3A HSP90AB1 PABPC1 NAP1L1 ATP5F1E STAT1 ITM2B EEF1D PTPRC RPL36AL YBX1 IL32 AES EIF3F HINT1 SLC25A6 RUNX3 FTH1 ATP5MG TOMM7 FOXP1 PNRC1 HNRNPA3 C12ORF57 DDX5 CD3E EEF2 EIF4B TOMM20 RPS4Y1 MBNL1 CD2 PSMA1 NOP53 MRPS6\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS12 TPT1 RPL13 RPL10 RPS14 RPS23 RPS19 RPL13A RPS6 TMSB4X RPS3 RPS3A RPS27 RPL28 RPL3 RPL30 RPL11 RPS15 RPL9 RPL37 RPL18A RPS9 RPL23A RPS21 RPS20 RPL23 RPS7 RPS15A RPL39 RPS13 RPL29 RPL6 HLA-B RPL37A VIM UBA52 RPL27 RPS29 RPS24 RPL5 RPL24 RPL14 RPL10A ACTB RPSA HLA-A ITM2B HLA-C PTMA IL32 RPL38 RPL22 NACA KIAA1551 FTH1 HSP90AB1 PNRC1 RPL31 STAT1 TMEM123 UQCRB S100A6 CD48 NAP1L1 YBX1 CD3D PABPC1 RNF213 RPL36 SERF2 GCC2 PTPRC GIMAP7 SYNE2 ENO1 CD2 NOP53 EIF1 HSP90AA1 SET ZFAS1 STK17A ZNF148 DDX5 CD3E RPL4 PPIA KTN1 AES IFITM2 BCL11B EEF1D NPM1 PRRC2C GLS EIF4B SUPT16H ARL4C\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPLP1 RPL10 TPT1 RPS12 RPS27 RPL28 RPS3A RPS14 RPL30 RPS23 RPL13A TMSB4X RPS6 RPS19 RPS3 RPS13 RPS15 RPL6 RPL9 RPL23A RPS15A RPS7 RPSA RPL3 RPL29 RPL37 RPS21 RPL18A RPL14 RPS20 RPL23 RPL5 RPL11 RPL39 HLA-B RPL37A UBA52 RPS29 RPL24 RPS9 NACA RPS24 HLA-A HLA-C RPL10A RPL27 HSP90AB1 PTMA IL7R RPL36 RPL31 HNRNPA2B1 GIMAP7 RPL38 RPL22 LTB VIM CD2 SYNE2 UQCRB HINT1 ANXA1 HSP90AA1 EEF2 H3F3B FAM107B HLA-E ACTB SERF2 NOP53 YBX1 SET EMP3 PNISR ITM2B KIAA1551 RPL4 EEF1D PSME1 SARAF DHX36 NDUFA12 ARHGDIB CALM1 STAT1 CFL1 AES NUCKS1 GBP2 NPM1 PNRC1 BIRC3 PTPRC ZFP36L1 HNRNPC SMCHD1 SLC25A6 TPM3\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPS12 TPT1 RPL10 RPLP1 RPS14 RPS3A RPL28 RPS23 RPS27 RPS6 RPL13A RPL11 RPS15A RPL30 RPL3 RPS3 RPL37 RPS19 RPS15 TMSB4X RPS13 RPL9 RPL39 RPL14 RPL6 HLA-B RPL18A RPL29 RPL5 RPS20 RPL23 RPS7 RPS24 UBA52 RPL23A RPS21 RPL38 RPS9 RPSA NACA GIMAP7 RPS29 RPL37A RPL31 RPL22 RPL27 RPL36 PTMA LTB PTPRC RPL24 LDHB HLA-C CCR7 IL32 GBP4 HLA-E RPL10A HSP90AA1 STAT1 HINT1 PFDN5 SARAF NPM1 COX7C CDC42SE2 ENO1 TOMM7 HSP90AB1 HLA-A ITM2B GBP5 GBP1 NUCB2 FYB1 IL7R DDX17 YBX1 RPL4 JAK1 PNRC1 GBP2 ACTB GYPC SERF2 PPIA BTF3 SFPQ RSRP1 LEF1 MRPS6 CD2 KANSL1 HMGB1 SON TPR TBL1XR1 ANXA1\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPL13 RPS12 TPT1 RPL10 RPS14 RPL28 RPL3 RPS23 RPS3 RPS3A RPL29 RPL11 RPL30 RPS15A RPL13A RPS19 RPS13 RPS6 RPS27 RPL10A RPS7 RPS15 TMSB4X RPL9 RPL23A RPL5 RPL24 RPL37A RPL37 LTB RPL6 RPS21 RPL14 UBA52 RPS24 RPL18A RPL23 PTMA RPL27 RPS20 RPL36 RPL39 RPL38 EEF1D NACA RPSA RPS9 RPS29 RPL31 PFDN5 BTF3 S100B HLA-A IL7R SARAF HLA-B PTPRC RPL22 PABPC1 CD3D HSP90AB1 H3F3B NAP1L1 VIM HLA-C PNRC1 HINT1 RPL4 COX7C TOMM7 HSP90AA1 HSP90B1 ITM2B IL32 RIPOR2 NCL NPM1 TPR BIRC3 CALR LEF1 CD3G FYB1 SUMO2 GTF3A YWHAZ UQCRB SLFN5 RNF213 RPL36AL CDC42 CCR7 FXYD5 TAX1BP1 CYBA CD2 CORO1A TIPARP\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 TPT1 RPS12 RPL13 RPL28 RPS3A RPLP1 RPS14 RPL10 TMSB4X RPS23 RPL30 RPL11 RPS27 RPL13A RPS15A RPL23A RPS6 RPL6 RPS19 RPS3 RPL18A RPS13 RPL3 RPS24 RPL37 RPS9 RPS21 RPL9 RPS15 RPL5 RPL37A RPS29 RPL23 RPS7 RPL24 RPSA RPL22 RPL14 RPL29 RPL39 RPL10A PTMA HLA-B PTPRC LTB RPL27 RPL36 UBA52 PFDN5 HINT1 CD3D RPS4Y1 RPL31 SARAF ACTB NACA HLA-A ITM2B RPL38 RPS20 CALM1 RPL4 KIAA1551 HSP90AB1 NAP1L1 ATP5F1E NPM1 PABPC1 PNRC1 GNAS GBP2 EEF1D HLA-E FYB1 YBX1 H3F3A GIMAP7 LDHB CCR7 DDX5 STAT1 RBM25 CD2 ARHGDIB TNFAIP8 HSP90AA1 FCMR SET COX6B1 CFL1 ARL4C RPL36AL ARPC2 RARRES3 HLA-C NOP53 EIF1 U2SURP BTF3\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPL13 RPS12 RPLP1 RPS19 TPT1 RPL28 RPS14 RPS27 TMSB4X RPS15 RPL13A RPS6 RPS23 RPL30 RPS15A RPL10 RPL18A RPS13 RPL5 RPS3A RPL9 RPL14 RPL11 RPL6 NACA RPS3 RPS21 RPL39 RPL29 COX7C RPL23 RPS7 RPL24 RPL23A GIMAP7 RPL38 RPL37 RPS20 RPL37A HLA-B RPS24 RPL31 RPS29 RPS9 PTPRC RPL10A HLA-C RPL3 HLA-A RPSA RPL22 LDHB HINT1 IL7R BTF3 RPL27 HNRNPA2B1 PTMA CD2 LUC7L3 GCC2 PPIA RPL36 ZFAS1 DDX5 EIF1 TRAF3IP3 GMFG PFDN5 NPM1 S100A6 NCL SEPT6 TXNIP HMGB1 SERF2 JAK1 CD48 CXCR4 UBA52 ETS1 EIF5A CCT3 CALM1 EEF1D UBB MYL12B ISCU ZRANB2 MORF4L1 STK17B EIF3E ITM2B YBX1 EDF1 TOMM7 SET EIF2S2 BAZ1A\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS12 RPL13 TPT1 RPL10 RPL13A RPL30 RPS14 RPS27 RPL28 RPS3A RPS3 RPS23 RPL3 RPS19 RPS15 RPS13 RPL29 RPL5 RPL11 RPL37 RPL14 RPL39 RPL6 RPS15A RPL36 RPS24 RPL24 RPS6 RPL9 RPL18A TMSB4X RPS20 RPL23 RPL37A RPSA LTB RPS7 RPL10A RPS9 RPL23A UBA52 PTMA RPS29 RPS21 RPL22 RPL27 RPL38 HLA-A HLA-B NACA H3F3A EIF3E NAP1L1 UQCRB CD3E HINT1 PABPC1 CD37 RPL31 PNISR HSP90AB1 RPL36AL ARHGDIB GIMAP7 MGAT4A ITM2B EIF1 IL32 IL7R ATM NPM1 CALM1 SARAF C12ORF57 S100A6 CCNI FTH1 MYL12A FOXP1 CCR7 CHCHD2 ZFAS1 HLA-C ATP5F1E HMGB1 PFDN5 EIF3H BTF3 VIM RPL4 N4BP2L2 CEBPZ CD8A ARF1 HLA-F SSB KMT2E GPX4\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 TPT1 RPL13 RPS14 RPS12 RPL10 RPL13A RPL30 RPS3A RPL11 RPS6 RPL28 RPS27 RPS15A RPS23 RPL3 RPS13 RPL6 RPS3 RPS7 TMSB4X RPL37 RPL9 RPL39 RPS19 RPL29 RPS20 RPL18A RPL23A RPL37A PTMA RPS15 RPL10A RPS29 RPS9 UBA52 RPL14 RPL5 RPL24 RPS24 RPSA RPL36 PTPRC RPL23 RPS21 HLA-B RPL27 PABPC1 EEF1D NACA RPL22 RPL38 ITM2B EIF1 SARAF GIMAP7 RPL4 PFDN5 GIMAP4 CFL1 RPL31 COX7C C12ORF57 HSP90AA1 NEAT1 GBP4 HMGB1 PNRC1 SLC25A6 UBE2D3 BTF3 CALM1 H3F3B HLA-E CASP8 HLA-A TOMM20 RPS4Y1 COMMD6 HSP90AB1 ZNF217 PNN APOL6 FXYD5 RASGRP1 CCR7 ATP6V1G1 HCLS1 IL32 NDUFV2 GCC2 RIPOR2 GBP2 HNRNPD NAP1L1 SFPQ NKTR UBE2B RARRES3\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS12 RPS14 RPL10 RPL13 TPT1 RPS3A RPS19 RPL28 RPS27 RPL13A RPS23 RPS6 RPS15A RPS13 RPL30 RPL37 RPL39 RPS3 RPL18A RPL14 RPS15 RPL23A RPL5 RPL11 RPL9 RPS21 RPS20 RPL24 RPL3 RPL23 PTMA RPS29 RPS7 RPL29 TMSB4X RPS9 RPSA RPL36 RPL38 RPL27 RPL10A RPL22 RPL37A RPS24 RPL6 RPL31 NACA UBA52 EIF3E NAP1L1 EEF1D GIMAP7 HINT1 EIF1 PABPC1 NOP53 CD48 ATP5F1E RPS4Y1 LTB C12ORF57 TOMM7 PFDN5 EEF2 COX7C NDUFA4 HNRNPA2B1 BTF3 CD8B FXYD5 PARK7 LINC00861 PTPRC UBC RPL36AL GIMAP4 SARAF ACTR2 LDHB ARL6IP5 CD3E HLA-B FTH1 ITM2B GNAS HLA-A HSP90AA1 MYL12A ARHGDIB CCT8 RPL4 AKAP9 UBXN1 COMMD6 IL7R EIF1AX TXNIP RIOK3\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell CITE-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MALAT1 RPLP1 RPS12 RPL13 TPT1 RPL10 RPS14 RPS3A RPS3 RPL30 RPL13A RPS27 TMSB4X RPS6 RPS23 RPS15A RPL28 RPL3 RPL11 RPS19 RPS13 RPL18A RPL9 RPL39 RPL37 RPL6 RPS7 RPL10A RPL37A RPL29 RPS15 RPS20 RPL23A RPL14 RPS9 PTMA UBA52 RPL5 FTH1 RPS24 RPS21 NACA RPL27 RPL24 PABPC1 RPSA RPL23 HLA-B RPL36 RPS29 RPL38 EIF1 HINT1 IL7R RPL22 VIM ITM2B HLA-A NAP1L1 RPL31 PTPRC PNISR GIMAP7 PFDN5 RPL4 LTB ACTB NPM1 CALM1 PNRC1 HLA-C NOP53 SARAF GIMAP4 EEF1D EMP3 UQCRB HLA-E SLC25A6 STAT1 EIF3E RPL36AL BTF3 RSL1D1 ZFAS1 IL32 NELL2 NEAT1 GBP5 TOMM7 CYBA LDHB RSRP1 SERF2 SEPT6 ATM GTF3A CRBN PASK EIF3K\n{cell_types}: 'Naive CD4+ T', 'Effector CD4+ T', 'Naive CD8+ T', 'NK', 'Effector CD8+ T', 'B', 'Monocytes'." }, { "role": "assistant", "content": "Naive CD8+ T" } ] } ]