Datasets:
Tasks:
Image-to-Text
Languages:
English
Size:
10K - 100K
ArXiv:
Tags:
chemistry
cheminformatics
ocsr
optical-chemical-structure-recognition
molecule-recognition
smiles
License:
Add dataset card
Browse files
README.md
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license: other
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---
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language:
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- en
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license: other
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license_name: mixed-see-sources
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task_categories:
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- image-to-text
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tags:
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- chemistry
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- cheminformatics
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- ocsr
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- optical-chemical-structure-recognition
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- molecule-recognition
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- smiles
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- benchmark
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pretty_name: OCSR Benchmarks
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size_categories:
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- 10K<n<100K
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configs:
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- config_name: CLEF
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data_files:
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- split: test
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path: CLEF/test-*.parquet
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- config_name: JPO
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data_files:
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- split: test
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path: JPO/test-*.parquet
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- config_name: UOB
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data_files:
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- split: test
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path: UOB/test-*.parquet
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- config_name: USPTO
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data_files:
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- split: test
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path: USPTO/test-*.parquet
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- config_name: USPTO-10K
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data_files:
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- split: test
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path: USPTO-10K/test-*.parquet
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- config_name: Staker
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data_files:
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- split: test
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path: Staker/test-*.parquet
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- config_name: ACS
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data_files:
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- split: test
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path: ACS/test-*.parquet
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- config_name: WildMol-10K
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data_files:
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- split: test
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path: WildMol-10K/test-*.parquet
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- config_name: Indigo
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data_files:
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- split: test
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path: Indigo/test-*.parquet
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- config_name: ChemDraw
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data_files:
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- split: test
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path: ChemDraw/test-*.parquet
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---
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# OCSR Benchmarks
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A collection of ten benchmark datasets for **Optical Chemical Structure Recognition (OCSR)** —
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the task of converting chemical structure diagram images into machine-readable SMILES strings.
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These benchmarks were used to evaluate the [COMO model](https://huggingface.co/Keylab/COMO)
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(Closed-Loop Optical Molecule Recognition).
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## Subsets
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| Config | Split | Size | Domain | Source |
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|---|---|---|---|---|
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| `CLEF` | test | 992 | Real (patents) | Rajan et al., 2020 |
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| `JPO` | test | 450 | Real (patents) | Rajan et al., 2020 |
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| `UOB` | test | 5,740 | Real (academic) | Rajan et al., 2020 |
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| `USPTO` | test | 11,430 | Real (patents) | Rajan et al., 2020; Xiong et al., 2023 |
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| `USPTO-10K` | test | 10,000 | Real (patents) | Morin et al., 2023 |
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| `Staker` | test | 50,000 | Real | Qian et al., 2023 |
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| `ACS` | test | 331 | Real (publications) | Qian et al., 2023 |
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| `WildMol-10K` | test | 10,000 | Real (wild) | Fang et al., 2025 |
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| `Indigo` | test | 11,423 | Synthetic | Qian et al., 2023 |
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| `ChemDraw` | test | 5,719 | Synthetic | Qian et al., 2023 |
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## Schema
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Each sample has three fields:
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| Field | Type | Description |
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|---|---|---|
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| `image_id` | `string` | Original identifier for the sample |
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| `image` | `Image` | PNG image of the chemical structure diagram |
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| `SMILES` | `string` | Ground-truth SMILES string |
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## Usage
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```python
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from datasets import load_dataset
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# Load a single benchmark
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ds = load_dataset("Keylab/OCSR-Benchmarks", name="USPTO", split="test")
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sample = ds[0]
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sample["image"].show() # PIL Image
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print(sample["SMILES"])
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# Iterate over all benchmarks
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for config in ["CLEF", "JPO", "UOB", "USPTO", "USPTO-10K",
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"Staker", "ACS", "WildMol-10K", "Indigo", "ChemDraw"]:
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ds = load_dataset("Keylab/OCSR-Benchmarks", name=config, split="test")
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print(f"{config}: {len(ds)} samples")
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```
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## Bulk Download
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Pre-packaged `.tar.gz` archives (images + CSV) are also available in the
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[COMO model repository](https://huggingface.co/Keylab/COMO/tree/main/benchmarks)
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for direct download without the `datasets` library.
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## License
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These benchmarks are collected from existing public OCSR datasets.
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Please refer to the original sources for attribution and applicable terms:
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| Benchmarks | Reference |
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|---|---|
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| USPTO, CLEF, JPO, UOB | Rajan et al., 2020; Xiong et al., 2023 |
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| Indigo, ChemDraw, ACS, Staker | Qian et al., 2023 |
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| USPTO-10K | Morin et al., 2023 |
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| WildMol-10K | Fang et al., 2025 |
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## Citation
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If you use these benchmarks, please cite the COMO paper and the original benchmark sources:
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```bibtex
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@article{lyu2026closed,
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title={COMO: Closed-Loop Optical Molecule Recognition with Minimum Risk Training},
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author={Lyu, Zhuoqi and Ke, Qing},
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journal={arXiv preprint arXiv:2604.23546},
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year={2026}
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}
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```
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