| { |
| "summary": { |
| "zero_shot": { |
| "num_tasks": 21, |
| "support_examples_per_task": 0, |
| "query_file": "FAME_benchmark/episodes/zero_shot/<task>/test.jsonl" |
| }, |
| "few_shot": { |
| "num_tasks": 21, |
| "support_examples_per_task": 10, |
| "seeds": [ |
| 0, |
| 1, |
| 2, |
| 3, |
| 4 |
| ], |
| "episode_file": "FAME_benchmark/episodes/k10_seed{0..4}/<task>/" |
| }, |
| "ood": { |
| "num_pairs": 12, |
| "present_pairs": 12, |
| "support_examples_per_pair": 10, |
| "seed": 0, |
| "shift_types": [ |
| "covariate", |
| "semantic" |
| ] |
| }, |
| "iid_source_datasets": 19, |
| "iid_matched_source_datasets": 19, |
| "iid_test_total": 14958, |
| "iid_test_positive": 13689, |
| "iid_test_negative": 1269 |
| }, |
| "iid_datasets": [ |
| { |
| "source_dataset": "BraTS", |
| "release_dataset": "BraTS", |
| "anatomy": "Brain", |
| "modality": "MRI", |
| "roi": "Brain tumor", |
| "test_total": 299, |
| "test_positive": 237, |
| "test_negative": 62, |
| "observed_total": 299, |
| "observed_positive": 237, |
| "observed_negative": 62, |
| "status": "match" |
| }, |
| { |
| "source_dataset": "ISLES 2022", |
| "release_dataset": "ISLES-2022", |
| "anatomy": "Brain", |
| "modality": "MRI", |
| "roi": "Ischemic stroke lesion", |
| "test_total": 1000, |
| "test_positive": 700, |
| "test_negative": 300, |
| "observed_total": 1000, |
| "observed_positive": 700, |
| "observed_negative": 300, |
| "status": "match" |
| }, |
| { |
| "source_dataset": "BUID", |
| "release_dataset": "BUID", |
| "anatomy": "Breast", |
| "modality": "Ultrasound", |
| "roi": "Breast mass", |
| "test_total": 222, |
| "test_positive": 222, |
| "test_negative": 0, |
| "observed_total": 222, |
| "observed_positive": 222, |
| "observed_negative": 0, |
| "status": "match" |
| }, |
| { |
| "source_dataset": "BUSI", |
| "release_dataset": "BUSI", |
| "anatomy": "Breast", |
| "modality": "Ultrasound", |
| "roi": "Breast mass", |
| "test_total": 770, |
| "test_positive": 637, |
| "test_negative": 133, |
| "observed_total": 770, |
| "observed_positive": 637, |
| "observed_negative": 133, |
| "status": "match" |
| }, |
| { |
| "source_dataset": "CVC-ColonDB", |
| "release_dataset": "CVC_ColonDB", |
| "anatomy": "Colon", |
| "modality": "Colonoscopy", |
| "roi": "Colorectal polyp", |
| "test_total": 370, |
| "test_positive": 370, |
| "test_negative": 0, |
| "observed_total": 370, |
| "observed_positive": 370, |
| "observed_negative": 0, |
| "status": "match" |
| }, |
| { |
| "source_dataset": "CVC-ClinicDB", |
| "release_dataset": "CVC_ClinicDB", |
| "anatomy": "Colon", |
| "modality": "Colonoscopy", |
| "roi": "Colorectal polyp", |
| "test_total": 602, |
| "test_positive": 602, |
| "test_negative": 0, |
| "observed_total": 602, |
| "observed_positive": 602, |
| "observed_negative": 0, |
| "status": "match" |
| }, |
| { |
| "source_dataset": "GlaS", |
| "release_dataset": "glas", |
| "anatomy": "Colon", |
| "modality": "Histopathology", |
| "roi": "Colorectal gland", |
| "test_total": 770, |
| "test_positive": 637, |
| "test_negative": 133, |
| "observed_total": 770, |
| "observed_positive": 637, |
| "observed_negative": 133, |
| "status": "match" |
| }, |
| { |
| "source_dataset": "Kvasir-SEG", |
| "release_dataset": "Kvasir-SEG", |
| "anatomy": "Colon", |
| "modality": "Colonoscopy", |
| "roi": "Colorectal polyp", |
| "test_total": 990, |
| "test_positive": 990, |
| "test_negative": 0, |
| "observed_total": 990, |
| "observed_positive": 990, |
| "observed_negative": 0, |
| "status": "match" |
| }, |
| { |
| "source_dataset": "OIA-DDR", |
| "release_dataset": "DDR", |
| "anatomy": "Retina", |
| "modality": "Color fundus photography", |
| "roi": "DR-related lesions", |
| "test_total": 747, |
| "test_positive": 747, |
| "test_negative": 0, |
| "observed_total": 747, |
| "observed_positive": 747, |
| "observed_negative": 0, |
| "status": "match" |
| }, |
| { |
| "source_dataset": "CFP-PM-1203", |
| "release_dataset": "CFP_PM_1203", |
| "anatomy": "Retina", |
| "modality": "Color fundus photography", |
| "roi": "Pathologic myopia", |
| "test_total": 1000, |
| "test_positive": 959, |
| "test_negative": 41, |
| "observed_total": 1000, |
| "observed_positive": 959, |
| "observed_negative": 41, |
| "status": "match" |
| }, |
| { |
| "source_dataset": "Retinal-Lesions", |
| "release_dataset": "retinal_lesions_dr", |
| "anatomy": "Retina", |
| "modality": "Color fundus photography", |
| "roi": "DR-related lesions", |
| "test_total": 1000, |
| "test_positive": 700, |
| "test_negative": 300, |
| "observed_total": 1000, |
| "observed_positive": 700, |
| "observed_negative": 300, |
| "status": "match" |
| }, |
| { |
| "source_dataset": "RETOUCH", |
| "release_dataset": "RETOUCH", |
| "anatomy": "Retina", |
| "modality": "OCT B-scan", |
| "roi": "Retinal fluid", |
| "test_total": 1000, |
| "test_positive": 700, |
| "test_negative": 300, |
| "observed_total": 1000, |
| "observed_positive": 700, |
| "observed_negative": 300, |
| "status": "match" |
| }, |
| { |
| "source_dataset": "COVID19-CT-Lesion", |
| "release_dataset": "COVID19_CT_Lesion", |
| "anatomy": "Lung", |
| "modality": "CT", |
| "roi": "COVID-19 lung lesion", |
| "test_total": 999, |
| "test_positive": 999, |
| "test_negative": 0, |
| "observed_total": 999, |
| "observed_positive": 999, |
| "observed_negative": 0, |
| "status": "match" |
| }, |
| { |
| "source_dataset": "MosMedData", |
| "release_dataset": "MosMedData", |
| "anatomy": "Lung", |
| "modality": "CT", |
| "roi": "COVID-19 lung lesion", |
| "test_total": 999, |
| "test_positive": 999, |
| "test_negative": 0, |
| "observed_total": 999, |
| "observed_positive": 999, |
| "observed_negative": 0, |
| "status": "match" |
| }, |
| { |
| "source_dataset": "MSD Task06 Lung", |
| "release_dataset": "MSD_Task06_Lung", |
| "anatomy": "Lung", |
| "modality": "CT", |
| "roi": "Lung tumor", |
| "test_total": 1000, |
| "test_positive": 1000, |
| "test_negative": 0, |
| "observed_total": 1000, |
| "observed_positive": 1000, |
| "observed_negative": 0, |
| "status": "match" |
| }, |
| { |
| "source_dataset": "PH2", |
| "release_dataset": "PH2", |
| "anatomy": "Skin", |
| "modality": "Dermoscopy", |
| "roi": "Melanocytic lesion", |
| "test_total": 190, |
| "test_positive": 190, |
| "test_negative": 0, |
| "observed_total": 190, |
| "observed_positive": 190, |
| "observed_negative": 0, |
| "status": "match" |
| }, |
| { |
| "source_dataset": "ISIC 2018", |
| "release_dataset": "ISIC2018", |
| "anatomy": "Skin", |
| "modality": "Dermoscopy", |
| "roi": "Skin lesion", |
| "test_total": 1000, |
| "test_positive": 1000, |
| "test_negative": 0, |
| "observed_total": 1000, |
| "observed_positive": 1000, |
| "observed_negative": 0, |
| "status": "match" |
| }, |
| { |
| "source_dataset": "TG3K", |
| "release_dataset": "TG3K", |
| "anatomy": "Thyroid", |
| "modality": "Ultrasound", |
| "roi": "Thyroid gland", |
| "test_total": 1000, |
| "test_positive": 1000, |
| "test_negative": 0, |
| "observed_total": 1000, |
| "observed_positive": 1000, |
| "observed_negative": 0, |
| "status": "match" |
| }, |
| { |
| "source_dataset": "TN3K", |
| "release_dataset": "TN3K", |
| "anatomy": "Thyroid", |
| "modality": "Ultrasound", |
| "roi": "Thyroid nodule", |
| "test_total": 1000, |
| "test_positive": 1000, |
| "test_negative": 0, |
| "observed_total": 1000, |
| "observed_positive": 1000, |
| "observed_negative": 0, |
| "status": "match" |
| } |
| ], |
| "ood_pairs": [ |
| { |
| "shift_type": "covariate", |
| "source_dataset": "BUSI", |
| "target_dataset": "BUID", |
| "status": "present", |
| "pair_id": "cov_BUSI_to_BUID_breast_mass", |
| "support_total": "10", |
| "test_total": "222", |
| "test_positive": "222", |
| "test_negative": "0" |
| }, |
| { |
| "shift_type": "covariate", |
| "source_dataset": "Kvasir-SEG", |
| "target_dataset": "CVC-ClinicDB", |
| "status": "present", |
| "pair_id": "cov_Kvasir_SEG_to_CVC_ClinicDB_polyp", |
| "support_total": "10", |
| "test_total": "602", |
| "test_positive": "602", |
| "test_negative": "0" |
| }, |
| { |
| "shift_type": "covariate", |
| "source_dataset": "Kvasir-SEG", |
| "target_dataset": "CVC-ColonDB", |
| "status": "present", |
| "pair_id": "cov_Kvasir_SEG_to_CVC_ColonDB_polyp", |
| "support_total": "10", |
| "test_total": "370", |
| "test_positive": "370", |
| "test_negative": "0" |
| }, |
| { |
| "shift_type": "covariate", |
| "source_dataset": "ISIC 2018", |
| "target_dataset": "PH2", |
| "status": "present", |
| "pair_id": "cov_ISIC2018_to_PH2_skin_lesion", |
| "support_total": "10", |
| "test_total": "190", |
| "test_positive": "190", |
| "test_negative": "0" |
| }, |
| { |
| "shift_type": "covariate", |
| "source_dataset": "Retinal-Lesions", |
| "target_dataset": "DDR", |
| "status": "present", |
| "pair_id": "cov_Retinal_Lesions_to_DDR_DR_lesions", |
| "support_total": "10", |
| "test_total": "747", |
| "test_positive": "747", |
| "test_negative": "0" |
| }, |
| { |
| "shift_type": "covariate", |
| "source_dataset": "COVID19-CT-Lesion", |
| "target_dataset": "MosMedData", |
| "status": "present", |
| "pair_id": "cov_COVID19_CT_Lesion_to_MosMedData_lung_lesion", |
| "support_total": "10", |
| "test_total": "999", |
| "test_positive": "999", |
| "test_negative": "0" |
| }, |
| { |
| "shift_type": "semantic", |
| "source_dataset": "BraTS", |
| "target_dataset": "ISLES 2022", |
| "status": "present", |
| "pair_id": "sem_BraTS_to_ISLES2022_brain_mri", |
| "support_total": "10", |
| "test_total": "1000", |
| "test_positive": "700", |
| "test_negative": "300" |
| }, |
| { |
| "shift_type": "semantic", |
| "source_dataset": "CFP-PM-1203", |
| "target_dataset": "Retinal-Lesions", |
| "status": "present", |
| "pair_id": "sem_CFP_PM_1203_to_Retinal_Lesions_fundus", |
| "support_total": "10", |
| "test_total": "1000", |
| "test_positive": "700", |
| "test_negative": "300" |
| }, |
| { |
| "shift_type": "semantic", |
| "source_dataset": "CFP-PM-1203", |
| "target_dataset": "DDR", |
| "status": "present", |
| "pair_id": "sem_CFP_PM_1203_to_DDR_fundus", |
| "support_total": "10", |
| "test_total": "747", |
| "test_positive": "747", |
| "test_negative": "0" |
| }, |
| { |
| "shift_type": "semantic", |
| "source_dataset": "COVID19-CT-Lesion", |
| "target_dataset": "MSD Task06 Lung", |
| "status": "present", |
| "pair_id": "sem_COVID19_CT_Lesion_to_MSD_Task06_Lung_ct", |
| "support_total": "10", |
| "test_total": "1000", |
| "test_positive": "1000", |
| "test_negative": "0" |
| }, |
| { |
| "shift_type": "semantic", |
| "source_dataset": "BUSI", |
| "target_dataset": "TN3K", |
| "status": "present", |
| "pair_id": "sem_BUSI_to_TN3K_ultrasound", |
| "support_total": "10", |
| "test_total": "1000", |
| "test_positive": "1000", |
| "test_negative": "0" |
| }, |
| { |
| "shift_type": "semantic", |
| "source_dataset": "TN3K", |
| "target_dataset": "TG3K", |
| "status": "present", |
| "pair_id": "sem_TN3K_to_TG3K_ultrasound", |
| "support_total": "10", |
| "test_total": "1000", |
| "test_positive": "1000", |
| "test_negative": "0" |
| } |
| ] |
| } |
|
|