| { |
| "schema": "spot.hf_stage1_release_manifest.v1", |
| "release_id": "stage1-continuous-v3.0.1", |
| "release_date": "2026-07-13", |
| "release_tag": "stage1-continuous-v3.0.1", |
| "scope": "Stage 1 only: continuous CD4 transcriptional-program scoring", |
| "source_repository": "https://github.com/Kirit-Singh/spot", |
| "source_repository_commit": "29bd367b6e0ed674868041a4fe85d1f6fafd4cb8", |
| "historical_v2": { |
| "hf_revision": "e5fcf98b56a9302921d402e97fc5a190bd88f9a6", |
| "release_tag": "stage1-continuous-v2", |
| "current_tree_action": "remove root stage01_umap_seed.json; preserve it in history and the v2 tag" |
| }, |
| "upstream": { |
| "dataset": "Primary Human CD4+ T Cell Perturb-seq", |
| "portal": "https://virtualcellmodels.cziscience.com/dataset/genome-scale-tcell-perturb-seq", |
| "portal_version": "v1.0", |
| "portal_release_date": "2025-12-22", |
| "portal_declared_license": "MIT License", |
| "preprint_doi": "10.64898/2025.12.23.696273" |
| }, |
| "scientific_content_hashes": { |
| "scores_canonical_content_sha256": "43c4296d5166740c334441a69df23bb440a073382bbe79628a3bb89e43d51316", |
| "coordinates_canonical_content_sha256": "c3d3a0a752614470693a0148ba37a45cf20aba290a6e54b4f7fa0bc468a6605b", |
| "display_barcode_set_sha256": "1224312e52231f4b2e07c192b39c6f9c69dd6e2d5b8bd64d936c17a9b2435a93", |
| "registry_self_declared_sha256": "d287e332289e3400b6d6abdfcfab018c0486854c4028878371e367cce5e8bbb2", |
| "registry_scorer_projection_sha256": "008c1da121a1ea3b08871f1bc0339b120d5dc9b46d01619768eebd046331bd85", |
| "stage2_registry_view_canonical_sha256": "5d1d8c362ee55dba048c8b5d6718cffe4525acbcda230d503f4899433c052a0c" |
| }, |
| "release_boundaries": { |
| "continuous_scores_only": true, |
| "categorical_cell_type_calls": false, |
| "stage1_inferential_p_q_fdr": false, |
| "cell_type_prevalence": false, |
| "stage2_to_stage4_results_bundled": false, |
| "full_396k_table_authoritative": true, |
| "overlay_40k_display_only": true, |
| "historical_selectability_active_gate": false |
| }, |
| "privacy": { |
| "donor_identifiers": "coded and publicly joinable; not anonymous", |
| "donor_demographics_included": false, |
| "machine_local_paths_in_release": false, |
| "credentials_in_release": false |
| }, |
| "manifest_self_reference": "MANIFEST.json is excluded from its own file ledger", |
| "n_files_listed": 30, |
| "files": [ |
| { |
| "path": ".gitattributes", |
| "size_bytes": 2812, |
| "sha256": "1c92bf31c9c1041afd4ea9f49322ebfd4078f6806cc943b228d78f31595a6c4e", |
| "role": "lfs_configuration" |
| }, |
| { |
| "path": "LICENSE", |
| "size_bytes": 1427, |
| "sha256": "e87ae09068d6a2f95f164303158ef9dcac9202d80c9da99c675071a4e9bea1cf", |
| "role": "spot_derived_license" |
| }, |
| { |
| "path": "NOTICE", |
| "size_bytes": 1302, |
| "sha256": "d6d6594dcf8c2ba88a9c17a41eaafb34f0c0f74a51c28e50d1187309d37501ff", |
| "role": "source_attribution" |
| }, |
| { |
| "path": "README.md", |
| "size_bytes": 8514, |
| "sha256": "a8ef2046d10607d6e99c579147aece97d05d681463363a57729d37b886f2cb35", |
| "role": "dataset_card" |
| }, |
| { |
| "path": "ntc_clustered.h5ad", |
| "size_bytes": 3841088649, |
| "sha256": "2edc6d318415c8b0ee779d707ab86e26ddb6f0274db51ab4a12f21ebfda50e43", |
| "role": "pinned_stage1_input", |
| "source_kind": "unchanged_existing_hf_file" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/contracts/spot.stage01_selection.v3.schema.json", |
| "size_bytes": 9193, |
| "sha256": "f8104283d7139ed47059978751dbed33e8426c920ba0d8086082eda9c43f4c1d", |
| "role": "stage1_contract" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/data/stage01_scores_full.parquet", |
| "size_bytes": 21872411, |
| "sha256": "de63b496e8121c77babe380e0c3b5ddfd66f9ce67d0d4e80f55645d177e27e5f", |
| "role": "stage1_data" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/data/stage01_summary_v3.json", |
| "size_bytes": 4088, |
| "sha256": "5e4153bdfa83cc0e77cd2980db024675006124b521b18de4fa970a8ff8bd2b13", |
| "role": "stage1_data" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/data/stage01_umap_coordinates.json", |
| "size_bytes": 4670713, |
| "sha256": "a7164168aaf61466ca699e1b00633c37ecef88705db443fb7fb0d00a86ccbbf6", |
| "role": "stage1_data" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/data/stage01_umap_overlay_v3_hf.json", |
| "size_bytes": 18116243, |
| "sha256": "f63cdb9e986f040a2ff4ba5cb20393dbf686c9efd819db0a297aa6b3f15a6030", |
| "role": "stage1_data", |
| "source_artifact_sha256": "1fe05f33112c12af970ab5269ad64b1e0211f09143c991c2be982493c002366b", |
| "packaging_transform": "Top-level note only: replace the obsolete non-deployment sentence with display-only/full-396k-authoritative wording. All other parsed JSON values are identical to the source artifact." |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/method/stage01_activation_association_v1.json", |
| "size_bytes": 8725, |
| "sha256": "fd1d9bb0a53ad7ecbde1d9999ccc9bdf8be1cc765f6ff4ef4619a662c4a63c22", |
| "role": "stage1_method" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/method/stage01_bins_v3.csv", |
| "size_bytes": 279075, |
| "sha256": "5cf42fcdd6db26119ebde96f172dae12c8d5fe34b1202e34db1b586478a96fd8", |
| "role": "stage1_method" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/method/stage01_control_eligible_pool.json", |
| "size_bytes": 168532, |
| "sha256": "70072addb7c8c323eda8b110d1efe6d2670f8a00dfe6138e36a5ea7f79db541a", |
| "role": "stage1_method" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/method/stage01_control_method.json", |
| "size_bytes": 5672, |
| "sha256": "02a94b07a19901ec41e9e26c25ce156b80c0cf67b35a17f00cf8ca6087699971", |
| "role": "stage1_method" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/method/stage01_controls_v3.csv", |
| "size_bytes": 52896, |
| "sha256": "79764283a3429a103ed87a41b88a0c094fac84a7f46eebcb034d156e8573de75", |
| "role": "stage1_method" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/method/stage01_input_manifest.json", |
| "size_bytes": 2681, |
| "sha256": "3b13488716a366676813bff567da91f216a426c94bd1fe43c22824f73b26d521", |
| "role": "stage1_method" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/method/stage01_program_registry_v3.json", |
| "size_bytes": 156786, |
| "sha256": "bcb536d06d373ab8f2c8e33d73096bd2dc66a62f23a2124a733c1c361c38e664", |
| "role": "stage1_method" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/method/stage01_stage2_registry_view.json", |
| "size_bytes": 75237, |
| "sha256": "d37c19273435ff09d1705de4f64f9f185dcf4192a2bad5259cbd15d39e24915f", |
| "role": "stage1_method" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/receipts/stage01_v3_recovery_verification.json", |
| "size_bytes": 5991, |
| "sha256": "9a73316f8e31f7f067a87eb558b3c39dded1c6d1b6c0afdab78608e0d8fcc565", |
| "role": "independent_reconstruction_receipt" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/validation/diagnostics/stage01_marker_diagnostics_v2.json", |
| "size_bytes": 133737, |
| "sha256": "b43936167b2903f283a35970b2708d93b1ff78a11e2e83a0995adca7fe7ec56c", |
| "role": "stage1_validation" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/validation/stage01_gate_constituents_overlay_donor_v1.json.gz", |
| "size_bytes": 6589, |
| "sha256": "595fed635e339b168be991c4f1a0b25649d188e2a67f9430b5530cb53c07b8d1", |
| "role": "stage1_validation" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/validation/stage01_gate_constituents_overlay_donor_v1.manifest.json", |
| "size_bytes": 1150, |
| "sha256": "5891c760a510f1b1029ef8120f5f7ada5d5b9893f64483a84a9a2ea1602d3799", |
| "role": "stage1_validation" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/validation/stage01_gate_constituents_v1.json.gz", |
| "size_bytes": 131282, |
| "sha256": "66166c1e5f8fc88c60cd730e0bbd5f1e0b1be497506d46bd125f7b3a69aa1e2c", |
| "role": "stage1_validation" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/validation/stage01_gate_constituents_v1.manifest.json", |
| "size_bytes": 3016, |
| "sha256": "7e6658717222606b2c974378d1b283e230014f35e2dff9b22162ac980a28919d", |
| "role": "stage1_validation" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/validation/stage01_gate_constituents_v1.parquet", |
| "size_bytes": 92055, |
| "sha256": "8bdce731c810b3519fb14e290847a6d130f4bc8a94b999916fa022c2bc1b4b57", |
| "role": "stage1_validation" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/validation/stage01_gate_spec.json", |
| "size_bytes": 9852, |
| "sha256": "0bafcc1cac9f1666b8bb4b1dfb3e17341bcd6562da2fa732e48af6d11f4c78b3", |
| "role": "stage1_validation" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/validation/stage01_selectability_v3.json", |
| "size_bytes": 55064, |
| "sha256": "7c326a86d4586a851f5b91fb6f7e9796946e52eb41fe60123b41a6d3471d2420", |
| "role": "stage1_validation" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/validation/stage01_validation.json", |
| "size_bytes": 443999, |
| "sha256": "1c14cd2884117f03bd26b56ff32d5575d92caa53c5391fa0e7e0ed4f3c815371", |
| "role": "stage1_validation" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/validation/stage01_validation_independent_check.json", |
| "size_bytes": 9538, |
| "sha256": "e139d5f7565f529fc43b7ea55c205bf719ceff75036762ac24d8f068eeed9dba", |
| "role": "stage1_validation" |
| }, |
| { |
| "path": "stage1-continuous-v3.0.1/validation/stage01_validation_semantics.json", |
| "size_bytes": 547099, |
| "sha256": "25aee5c5b4e4f216cb204574034a5cffc5e6c994359ede292b522321e1cca026", |
| "role": "stage1_validation" |
| } |
| ] |
| } |
|
|
