shape list | cell_type_counts dict | disease_labels list | benchmark dict | meta dict |
|---|---|---|---|---|
[
100000,
61497
] | {
"A2 amacrine cell": 20,
"B cell": 669,
"B-1a B cell": 4,
"B-1b B cell": 5,
"B-2 B cell": 9,
"BEST4+ colonocyte": 21,
"BEST4+ enterocyte": 6,
"Bergmann glial cell": 161,
"CD14-low, CD16-positive monocyte": 16,
"CD14-positive monocyte": 344,
"CD14-positive, CD16-low monocyte": 36,
"CD14-positive, CD16-positive monocyte": 87,
"CD141-positive myeloid dendritic cell": 21,
"CD16-negative, CD56-bright natural killer cell, human": 46,
"CD16-positive, CD56-dim natural killer cell, human": 285,
"CD1c-positive myeloid dendritic cell": 63,
"CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human": 2,
"CD38-negative naive B cell": 199,
"CD4-negative, CD8-negative, alpha-beta intraepithelial T cell": 3,
"CD4-positive helper T cell": 301,
"CD4-positive, CD25-positive, alpha-beta regulatory T cell": 2,
"CD4-positive, alpha-beta T cell": 576,
"CD4-positive, alpha-beta cytotoxic T cell": 75,
"CD4-positive, alpha-beta memory T cell": 386,
"CD4-positive, alpha-beta thymocyte": 23,
"CD56-positive, CD161-positive immature natural killer cell, human": 20,
"CD8-alpha-beta-positive, alpha-beta intraepithelial T cell": 19,
"CD8-positive, alpha-beta T cell": 830,
"CD8-positive, alpha-beta cytotoxic T cell": 275,
"CD8-positive, alpha-beta memory T cell": 428,
"CD8-positive, alpha-beta thymocyte": 6,
"Cajal-Retzius cell": 3,
"GABAergic amacrine cell": 121,
"GABAergic interneuron": 72,
"GABAergic neuron": 1589,
"IgA plasma cell": 724,
"IgA plasmablast": 43,
"IgG memory B cell": 24,
"IgG plasma cell": 323,
"IgG plasmablast": 53,
"IgG-negative class switched memory B cell": 69,
"Kupffer cell": 147,
"L5 extratelencephalic projecting glutamatergic cortical neuron": 112,
"Langerhans cell": 10,
"M cell of gut": 5,
"Merkel cell": 3,
"Mueller cell": 760,
"OFF retinal ganglion cell": 23,
"OFF-bipolar cell": 354,
"ON retinal ganglion cell": 10,
"ON-bipolar cell": 435,
"Purkinje cell": 235,
"S cone cell": 1,
"Schwann cell": 153,
"Schwann cell precursor": 44,
"T cell": 1734,
"T follicular helper cell": 157,
"T follicular regulatory cell": 18,
"T-helper 1 cell": 48,
"T-helper 17 cell": 53,
"TAC3-positive striatal interneuron": 13,
"Tc1 cell": 39,
"VIP GABAergic cortical interneuron": 11,
"abnormal cell": 177,
"acinar cell": 8,
"acinar cell of salivary gland": 1074,
"activated CD4-positive, alpha-beta T cell": 83,
"activated CD4-positive, alpha-beta T cell, human": 24,
"activated CD8-positive, alpha-beta T cell": 157,
"adipocyte": 44,
"adipocyte of omentum tissue": 1170,
"adult skeletal muscle myoblast": 1,
"adventitial cell": 188,
"afferent neuron": 28,
"alpha-beta T cell": 296,
"alveolar macrophage": 1,
"amacrine cell": 133,
"anterior lens cell": 100,
"astrocyte": 1808,
"basal cell": 181,
"basal cell of epidermis": 28,
"basal cell of epithelium of bronchus": 14,
"basal cell of prostate epithelium": 1401,
"basal cell of urothelium": 157,
"basal-myoepithelial cell of mammary gland": 74,
"basophil": 1,
"basophil mast progenitor cell": 15,
"blood cell": 24,
"blood vessel endothelial cell": 982,
"blood vessel smooth muscle cell": 48,
"brain vascular cell": 1,
"bronchial goblet cell": 2,
"bronchial smooth muscle cell": 4,
"bronchus fibroblast of lung": 13,
"capillary endothelial cell": 735,
"cardiac endothelial cell": 89,
"cardiac muscle cell": 18,
"cardiac muscle myoblast": 36,
"cardiac neuron": 132,
"caudal ganglionic eminence derived cortical interneuron": 174,
"cell": 8,
"cell of skeletal muscle": 29,
"central memory CD4-positive, alpha-beta T cell": 518,
"central memory CD8-positive, alpha-beta T cell": 73,
"central nervous system macrophage": 491,
"centrilobular region hepatocyte": 56,
"centroblast": 68,
"centrocyte": 25,
"cerebellar granule cell": 68,
"cerebral cortex endothelial cell": 90,
"chandelier pvalb GABAergic cortical interneuron": 206,
"cholangiocyte": 21,
"choroid plexus epithelial cell": 262,
"choroid plexus macrophage": 6,
"ciliated cell": 224,
"ciliated epithelial cell": 52,
"class switched memory B cell": 155,
"classical monocyte": 1562,
"club cell": 90,
"club-like cell of the urethral epithelium": 72,
"colon endothelial cell": 33,
"colon goblet cell": 39,
"colon macrophage": 2,
"colonocyte": 133,
"columnar/cuboidal epithelial cell": 2,
"committed oligodendrocyte precursor": 12,
"common dendritic progenitor": 10,
"common lymphoid progenitor": 6,
"common myeloid progenitor": 18,
"cone retinal bipolar cell": 182,
"conventional dendritic cell": 173,
"cortical thymic epithelial cell": 319,
"corticomedullary thymic epithelial cell": 118,
"cycling T cell": 4,
"cycling macrophage": 4,
"cycling pulmonary alveolar type 2 cell": 32,
"cytotoxic T cell": 105,
"dendritic cell": 383,
"dendritic cell, human": 5,
"deuterosomal cell": 1,
"direct pathway medium spiny neuron": 96,
"dopaminergic neuron": 361,
"double negative thymocyte": 19,
"double-positive, alpha-beta thymocyte": 5,
"early colonocyte": 24,
"early lymphoid progenitor": 2,
"early promyelocyte": 94,
"effector CD4-positive, alpha-beta T cell": 180,
"effector CD8-positive, alpha-beta T cell": 162,
"effector T cell": 9,
"effector memory CD4-positive, alpha-beta T cell": 206,
"effector memory CD8-positive, alpha-beta T cell": 628,
"effector memory CD8-positive, alpha-beta T cell, terminally differentiated": 37,
"embryonic blood vessel endothelial progenitor cell": 18,
"endothelial cell": 1941,
"endothelial cell of arteriole": 53,
"endothelial cell of artery": 288,
"endothelial cell of coronary artery": 38,
"endothelial cell of hepatic sinusoid": 54,
"endothelial cell of lymphatic vessel": 350,
"endothelial cell of pericentral hepatic sinusoid": 163,
"endothelial cell of periportal hepatic sinusoid": 52,
"endothelial cell of uterus": 49,
"endothelial cell of vascular tree": 45,
"endothelial cell of venule": 436,
"endothelial tip cell": 7,
"enteric neuron": 66,
"enteric smooth muscle cell": 34,
"enterocyte": 626,
"enterocyte of epithelium proper of ileum": 15,
"enteroendocrine cell": 15,
"enteroendocrine cell of colon": 2,
"enteroglial cell": 173,
"eosinophil": 2,
"ependymal cell": 144,
"epicardial adipocyte": 60,
"epithelial cell": 335,
"epithelial cell of early distal convoluted tubule": 54,
"epithelial cell of glomerular capsule": 2,
"epithelial cell of lower respiratory tract": 7,
"epithelial cell of lung": 210,
"epithelial cell of nephron": 31,
"epithelial cell of prostate": 50,
"epithelial cell of proximal tubule": 1185,
"epithelial cell of proximal tubule segment 3": 42,
"epithelial cell of thymus": 3,
"epithelial cell of urethra": 122,
"erythroblast": 244,
"erythrocyte": 499,
"erythroid lineage cell": 31,
"erythroid progenitor cell": 172,
"exhausted T cell": 8,
"eye photoreceptor cell": 22,
"fallopian tube secretory epithelial cell": 6,
"fast muscle cell": 30,
"fenestrated endothelial cell": 30,
"fetal pre-type II pulmonary alveolar epithelial cell": 39,
"fibroblast": 4539,
"fibroblast of breast": 143,
"fibroblast of cardiac tissue": 61,
"fibroblast of connective tissue of glandular part of prostate": 23,
"fibroblast of connective tissue of nonglandular part of prostate": 62,
"fibroblast of connective tissue of prostate": 88,
"fibroblast of lung": 122,
"fibroblast of the aortic adventitia": 64,
"fibrocyte": 12,
"follicular B cell": 40,
"follicular dendritic cell": 1,
"forebrain neuroblast": 88,
"forebrain radial glial cell": 10,
"fraction A pre-pro B cell": 7,
"gamma-delta T cell": 348,
"germ cell": 11,
"germinal center B cell": 294,
"glandular secretory epithelial cell": 65,
"glial cell": 232,
"glioblast": 105,
"glioblast (sensu Vertebrata)": 6,
"glomerular capillary endothelial cell": 16,
"glomerular endothelial cell": 42,
"glutamatergic neuron": 3367,
"glycinergic amacrine cell": 85,
"glycinergic neuron": 37,
"goblet cell": 65,
"granulocyte": 38,
"granulocyte monocyte progenitor cell": 4,
"granulosa cell": 83,
"group 2 innate lymphoid cell": 3,
"group 3 innate lymphoid cell": 10,
"gut absorptive cell": 35,
"gut endothelial cell": 70,
"hair follicular keratinocyte": 116,
"hematopoietic cell": 1,
"hematopoietic multipotent progenitor cell": 82,
"hematopoietic precursor cell": 19,
"hematopoietic stem cell": 14,
"hepatic pit cell": 38,
"hepatic stellate cell": 51,
"hepatocyte": 343,
"ileal goblet cell": 4,
"immature B cell": 45,
"immature NK T cell": 48,
"immature Schwann cell": 1,
"immature T cell": 1,
"immature innate lymphoid cell": 112,
"immature microglial cell": 4,
"immature neutrophil": 4,
"indirect pathway medium spiny neuron": 85,
"inflammatory macrophage": 57,
"inhibitory interneuron": 390,
"inhibitory motor neuron": 16,
"innate lymphoid cell": 125,
"intercalated cell of salivary gland": 9,
"intermediate cell of urothelium": 246,
"intermediate monocyte": 22,
"interneuron": 93,
"interstitial cell": 9,
"interstitial cell of Cajal": 6,
"intestinal crypt stem cell": 42,
"intestinal crypt stem cell of colon": 4,
"intestinal crypt stem cell of large intestine": 25,
"intestinal crypt stem cell of small intestine": 7,
"intestinal tuft cell": 4,
"intestine goblet cell": 31,
"intrahepatic cholangiocyte": 7,
"ionocyte": 20,
"keratinocyte": 418,
"kidney capillary endothelial cell": 13,
"kidney cell": 88,
"kidney collecting duct alpha-intercalated cell": 29,
"kidney collecting duct cell": 1,
"kidney connecting tubule epithelial cell": 87,
"kidney connecting tubule principal cell": 13,
"kidney distal convoluted tubule epithelial cell": 106,
"kidney epithelial cell": 92,
"kidney interstitial alternatively activated macrophage": 1,
"kidney interstitial cell": 37,
"kidney interstitial fibroblast": 5,
"kidney loop of Henle ascending limb epithelial cell": 142,
"kidney loop of Henle epithelial cell": 2,
"kidney loop of Henle thick ascending limb epithelial cell": 209,
"kidney loop of Henle thin ascending limb epithelial cell": 7,
"kidney loop of Henle thin descending limb epithelial cell": 8,
"kidney proximal convoluted tubule epithelial cell": 305,
"kidney resident macrophage": 2,
"large pre-B-II cell": 8,
"late pro-B cell": 6,
"late promyelocyte": 32,
"lens epithelial cell": 79,
"lens fiber cell": 16,
"leukocyte": 119,
"liver dendritic cell": 23,
"luminal cell of prostate epithelium": 232,
"luminal endometrial multiciliated epithelial cell": 11,
"luminal epithelial cell of mammary gland": 5,
"lung goblet cell": 4,
"lung multiciliated epithelial cell": 84,
"lung perichondrial fibroblast": 8,
"lung pericyte": 45,
"lung resident memory CD4-positive, alpha-beta T cell": 34,
"lung resident memory CD8-positive, alpha-beta T cell": 44,
"lung secretory cell": 75,
"lymphocyte": 761,
"lymphocyte of B lineage": 14,
"lymphoid lineage restricted progenitor cell": 67,
"macroglial cell": 100,
"macrophage": 2216,
"macula densa epithelial cell": 4,
"male germ cell": 9,
"malignant cell": 1625,
"mast cell": 247,
"mature B cell": 288,
"mature NK T cell": 777,
"mature astrocyte": 422,
"mature microglial cell": 337,
"mature neutrophil": 24,
"medullary thymic epithelial cell": 143,
"medullary thymic epithelial cell type 1": 71,
"medullary thymic epithelial cell type 2": 10,
"medullary thymic epithelial cell type 3": 17,
"megakaryocyte": 13,
"megakaryocyte progenitor cell": 14,
"megakaryocyte-erythroid progenitor cell": 12,
"melanocyte": 23,
"memory B cell": 785,
"memory T cell": 98,
"meningeal macrophage": 11,
"mesangial cell": 9,
"mesenchymal cell": 83,
"mesenchymal stem cell": 117,
"mesenchymal stem cell of adipose tissue": 811,
"mesonephric nephron tubule epithelial cell": 49,
"mesothelial cell": 495,
"metamyelocyte": 4,
"microglial cell": 1164,
"midzonal region hepatocyte": 17,
"monocyte": 1036,
"mononuclear phagocyte": 223,
"motor neuron": 43,
"mucosa-associated lymphoid tissue macrophage": 67,
"mucosal invariant T cell": 61,
"mucus secreting cell": 5,
"multiciliated epithelial cell": 16,
"multiciliated epithelial cell of the bronchus": 1,
"mural cell": 282,
"muscle cell": 165,
"myelinating Schwann cell": 9,
"myelocyte": 75,
"myeloid cell": 1379,
"myeloid dendritic cell": 94,
"myeloid leukocyte": 42,
"myeloid lineage restricted progenitor cell": 4,
"myo-medullary thymic epithelial cell": 26,
"myoblast": 32,
"myoepithelial cell": 29,
"myofibroblast cell": 317,
"naive B cell": 807,
"naive T cell": 86,
"naive thymus-derived CD4-positive, alpha-beta T cell": 744,
"naive thymus-derived CD8-positive, alpha-beta T cell": 176,
"nasal mucosa goblet cell": 49,
"natural T-regulatory cell": 50,
"natural killer cell": 1803,
"neoplastic cell": 18,
"neural cell": 74,
"neural crest cell": 19,
"neural progenitor cell": 477,
"neuro-medullary thymic epithelial cell": 32,
"neuroblast (sensu Nematoda and Protostomia)": 26,
"neuroblast (sensu Vertebrata)": 83,
"neuroendocrine cell": 12,
"neuroendocrine cell of epithelium of lobar bronchus": 19,
"neuron": 8037,
"neuron associated cell": 3,
"neuronal receptor cell": 1,
"neuronal-restricted precursor": 14,
"neuroplacodal cell": 23,
"neutrophil": 122,
"non-classical monocyte": 379,
"non-myelinating Schwann cell": 7,
"odontoblast": 66,
"oligodendrocyte": 4890,
"oligodendrocyte precursor cell": 1044,
"oocyte": 14,
"oogonial cell": 75,
"oral mucosa squamous cell": 103,
"osteoclast": 2,
"pancreatic A cell": 16,
"pancreatic D cell": 179,
"pancreatic acinar cell": 4,
"pancreatic ductal cell": 8,
"pancreatic endocrine cell": 1,
"paneth cell": 61,
"paneth cell of colon": 11,
"parietal epithelial cell": 22,
"pericyte": 942,
"perineurial cell": 5,
"peripheral nervous system neuron": 1,
"periportal region hepatocyte": 79,
"peritubular capillary endothelial cell": 24,
"perivascular cell": 38,
"perivascular macrophage": 3,
"pinealocyte": 12,
"plasma cell": 1263,
"plasmablast": 313,
"plasmacytoid dendritic cell": 113,
"plasmacytoid dendritic cell, human": 6,
"platelet": 342,
"pluripotent stem cell": 10,
"podocyte": 104,
"pre-B-I cell": 6,
"precursor B cell": 61,
"precursor cell": 7,
"primary cultured cell": 1,
"primitive red blood cell": 47,
"primordial germ cell": 55,
"pro-B cell": 20,
"progenitor cell": 258,
"promonocyte": 19,
"promyelocyte": 3,
"prostate gland microvascular endothelial cell": 48,
"prostate stromal cell": 12,
"pulmonary alveolar epithelial cell": 45,
"pulmonary alveolar type 1 cell": 21,
"pulmonary alveolar type 2 cell": 279,
"pulmonary artery endothelial cell": 34,
"pulmonary ionocyte": 2,
"pulmonary neuroendocrine cell": 34,
"pvalb GABAergic cortical interneuron": 59,
"radial glial cell": 80,
"regular atrial cardiac myocyte": 572,
"regulatory T cell": 147,
"renal alpha-intercalated cell": 45,
"renal beta-intercalated cell": 19,
"renal intercalated cell": 49,
"renal principal cell": 67,
"respiratory basal cell": 14,
"respiratory tract epithelial cell": 116,
"respiratory tract suprabasal cell": 2,
"reticulocyte": 280,
"retina horizontal cell": 120,
"retinal astrocyte": 8,
"retinal bipolar neuron": 47,
"retinal blood vessel endothelial cell": 15,
"retinal cone cell": 118,
"retinal ganglion cell": 412,
"retinal pigment epithelial cell": 81,
"retinal rod cell": 784,
"rod bipolar cell": 141,
"salivary gland glandular cell": 159,
"sebocyte": 8,
"secondary lens fiber": 19,
"secretory cell": 246,
"sensory neuron of dorsal root ganglion": 44,
"seromucus secreting cell": 82,
"serotonergic neuron": 8,
"serous secreting cell": 99,
"skeletal muscle fiber": 26,
"skeletal muscle myoblast": 13,
"skeletal muscle satellite cell": 10,
"skeletal muscle satellite stem cell": 299,
"skin fibroblast": 159,
"slow muscle cell": 25,
"small pre-B-II cell": 13,
"smooth muscle cell": 421,
"smooth muscle cell of large intestine": 9,
"smooth muscle cell of prostate": 86,
"smooth muscle cell of small intestine": 7,
"smooth muscle cell of the pulmonary artery": 24,
"smooth muscle myoblast": 3,
"squamous epithelial cell": 76,
"sst GABAergic cortical interneuron": 63,
"starburst amacrine cell": 5,
"stem cell": 25,
"stem cell of epidermis": 19,
"striated cell of salivary gland": 14,
"stromal cell": 363,
"stromal cell of endometrium": 1,
"stromal cell of ovary": 446,
"subcutaneous adipocyte": 932,
"supporting cell of vestibular epithelium": 6,
"tendon cell": 7,
"thalamic excitatory neuron": 4,
"theca cell": 63,
"thymic fibroblast type 1": 185,
"thymic fibroblast type 2": 97,
"thymocyte": 47,
"tip cell": 10,
"tonsil germinal center B cell": 344,
"tracheal goblet cell": 15,
"transit amplifying cell": 45,
"transit amplifying cell of colon": 305,
"transit amplifying cell of small intestine": 19,
"transitional stage B cell": 101,
"tuft cell of colon": 5,
"type A enteroendocrine cell": 21,
"type B pancreatic cell": 9,
"type D enteroendocrine cell": 1,
"type I NK T cell": 2,
"type II NK T cell": 1,
"umbrella cell of urothelium": 36,
"unknown": 504,
"unswitched memory B cell": 198,
"urothelial cell": 2,
"vasa recta ascending limb cell": 21,
"vasa recta descending limb cell": 18,
"vascular associated smooth muscle cell": 185,
"vascular leptomeningeal cell": 196,
"vascular lymphangioblast": 1,
"vein endothelial cell": 540
} | [
"Alzheimer disease",
"B-cell acute lymphoblastic leukemia",
"Barrett esophagus",
"COVID-19",
"Crohn disease",
"Down syndrome",
"HIV infectious disease",
"HIV infectious disease || leishmaniasis",
"HIV infectious disease || visceral leishmaniasis",
"Lewy body dementia",
"Parkinson disease",
"Wi... | {
"open_seconds": 0.0011517200618982315,
"read_chunk_seconds": 0.006099492311477661,
"chunk_shape": [
1000,
1000
],
"chunk_origin": [
84212,
38534
],
"shape": [
100000,
61497
]
} | {
"census_version": "2025-11-08T00:00:00",
"created_at": "2026-02-03T06:49:50.898169+00:00",
"max_cells": 100000,
"n_hvg": 0,
"obs_value_filter": "tissue_general == 'lung' and is_primary_data == True",
"organism": "Homo sapiens",
"schema_version": "1.0",
"seed": 0,
"source": "cellxgene-census",
"x_chunks": [
1000,
1000
],
"x_compression": {
"clevel": 3,
"cname": "zstd",
"codec": "blosc",
"shuffle": "bitshuffle"
},
"shape": [
100000,
61497
],
"obs_arrays": [
"_index",
"assay",
"cell_type",
"disease",
"sex",
"tissue"
],
"var_arrays": [
"_index",
"feature_id",
"feature_length",
"feature_name",
"feature_type",
"n_measured_obs",
"nnz",
"soma_joinid"
]
} |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.