#!/usr/bin/env python """ Compare QE band structure with HPRO real-space reconstruction for diamond. Reads: - data/bands/kpath.json (k-path from prepare.py) - data/bands/{uc,sc}/scf/bands.dat.gnu (QE eigenvalues from bands.x) - data/bands/{uc,sc}/reconstruction/aohamiltonian/ (HPRO H(R)) Produces band comparison plots: band_compare_uc.png and band_compare_sc.png Usage: python compare_bands.py [params.json] """ import json import os import sys import numpy as np import matplotlib matplotlib.use('Agg') import matplotlib.pyplot as plt from scipy.linalg import eigh SCRIPT_DIR = os.path.dirname(os.path.abspath(__file__)) def load_params(path=None): if path is None: path = os.path.join(SCRIPT_DIR, 'params.json') with open(path) as f: return json.load(f) def load_kpath(data_dir): with open(os.path.join(data_dir, 'bands', 'kpath.json')) as f: return json.load(f) def parse_bands_gnu(gnu_path): """Parse QE bands.dat.gnu: blocks separated by blank lines. Each block corresponds to one band; each line is 'k_dist eigenvalue'. Returns eigs (nk, nbnd) in eV (same units as bands.x output). """ bands, block = [], [] with open(gnu_path) as f: for line in f: line = line.strip() if line: block.append(float(line.split()[1])) else: if block: bands.append(block) block = [] if block: bands.append(block) if not bands: raise FileNotFoundError(f"No data found in {gnu_path}") return np.array(bands).T # (nk, nbnd) def compute_hpro_bands(aodir, kpts_all, x_arr, nbnd): """Compute band structure from HPRO H(R) via direct Fourier transform. Uses load_deeph_HS + scipy.eigh for each k-point. Hermitianizes H(k) (not H(R)) before diagonalizing. Returns: eigs (nk, nbnd) eigenvalues in eV, aligned to kpts_all """ from HPRO.deephio import load_deeph_HS from HPRO.constants import hartree2ev matH = load_deeph_HS(aodir, 'hamiltonians.h5', energy_unit=True) matS = load_deeph_HS(aodir, 'overlaps.h5', energy_unit=False) matS.hermitianize() # S(R) is exact, hermitianize in real space nk = len(kpts_all) eigs_all = np.empty((nk, nbnd)) print(f" Diagonalizing at {nk} k-points...") for ik, kpt in enumerate(kpts_all): if ik % 50 == 0: print(f" k-point {ik}/{nk}") Hk = matH.r2k(kpt).toarray() Sk = matS.r2k(kpt).toarray() Hk = 0.5 * (Hk + Hk.conj().T) # hermitianize H(k) only eigs_k, _ = eigh(Hk, Sk) eigs_all[ik] = eigs_k[:nbnd] * hartree2ev return eigs_all def plot_comparison(x, eigs_qe, eigs_hpro, x_hs, labels, title, outpath): """Plot QE vs HPRO band structures (both pre-aligned to their own VBM).""" fig, ax = plt.subplots(figsize=(6, 5)) for ib in range(eigs_qe.shape[1]): ax.plot(x, eigs_qe[:, ib], 'b-', lw=1.2, alpha=0.8, label='QE' if ib == 0 else '') for ib in range(eigs_hpro.shape[1]): ax.plot(x, eigs_hpro[:, ib], 'r--', lw=1.0, alpha=0.8, label='HPRO' if ib == 0 else '') for xv in x_hs: ax.axvline(xv, color='k', lw=0.8, ls='--') ax.axhline(0, color='k', lw=0.5, ls=':') ax.set_xticks(x_hs) ax.set_xticklabels(labels, fontsize=11) ax.set_ylabel('Energy (eV)', fontsize=11) ax.set_xlim(x[0], x[-1]) emax = max(np.max(eigs_qe), np.max(eigs_hpro)) emin = min(np.min(eigs_qe), np.min(eigs_hpro)) ax.set_ylim(emin - 1, emax + 1) ax.set_title(title, fontsize=11) ax.legend(fontsize=10) fig.tight_layout() fig.savefig(outpath, dpi=200) plt.close(fig) print(f" Saved: {outpath}") def main(): params_path = sys.argv[1] if len(sys.argv) > 1 else \ os.path.join(SCRIPT_DIR, 'params.json') params = load_params(params_path) data_dir = os.path.join(SCRIPT_DIR, 'data') kpath = load_kpath(data_dir) kpts_hs = np.array(kpath['kpts_hs']) npts = kpath['npts'] labels = kpath['labels'] x_ref = np.array(kpath['x']) x_hs = kpath['x_hs'] for cell_label in ('uc', 'sc'): bands_dir = os.path.join(data_dir, 'bands', cell_label) scf_dir = os.path.join(bands_dir, 'scf') aodir = os.path.join(bands_dir, 'reconstruction', 'aohamiltonian') if not os.path.exists(os.path.join(aodir, 'hamiltonians.h5')): print(f"[{cell_label}] HPRO hamiltonians.h5 not found, " "run reconstruct.py first") continue gnu = os.path.join(scf_dir, 'bands.dat.gnu') if not os.path.exists(gnu): print(f"[{cell_label}] bands.dat.gnu not found ({gnu}), " "run run.py first") continue print(f"\n[{cell_label}] Loading QE bands from bands.dat.gnu...") eigs_qe = parse_bands_gnu(gnu) # VBM: highest occupied level n_occ = 4 if cell_label == 'uc' else 4 * 8 # 4 electrons per UC rec = params['reconstruction'] nbnd_param = rec.get('nbnd_sc', rec['nbnd']) if cell_label == 'sc' else rec['nbnd'] print(f"[{cell_label}] Computing HPRO bands...") kpts_all = np.array(kpath['kpts_all']) eigs_hpro = compute_hpro_bands(aodir, kpts_all, x_ref, nbnd_param) # Align each source independently to its own VBM nbnd_cmp = min(nbnd_param, eigs_qe.shape[1], eigs_hpro.shape[1]) vbm_qe = np.max(eigs_qe[:, :n_occ]) vbm_hpro = np.max(eigs_hpro[:, :n_occ]) eigs_qe_al = eigs_qe[:, :nbnd_cmp] - vbm_qe eigs_hpro_al = eigs_hpro[:, :nbnd_cmp] - vbm_hpro mae = np.mean(np.abs(eigs_qe_al - eigs_hpro_al)) print(f"[{cell_label}] MAE (first {nbnd_cmp} bands, VBM-aligned) = " f"{mae*1000:.1f} meV") outpath = os.path.join(SCRIPT_DIR, f'band_compare_{cell_label}.png') title = f'Diamond {cell_label.upper()}: QE vs HPRO reconstruction' plot_comparison(x_ref, eigs_qe_al, eigs_hpro_al, x_hs, labels, title, outpath) print("\ncompare_bands.py done.") if __name__ == '__main__': main()