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Add xenium_skin_mixed sample13 SpaceTravLR outputs (no perturbations) (part 8)
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format spacetravlr_training_log v1
gene Abcd2
seed_only false
per_cell_cnn_export true
cnn_epochs_config 10
learning_rate 0.0002
lasso_n_iter_max 100
lasso_tol 0.0001
# summary: cluster_id, n_cells, n_modulators, lasso_r2, lasso_train_mse, lasso_fista_iters, lasso_converged, cnn_epochs_ran, cnn_mse_first, cnn_mse_last
cluster_id n_cells n_modulators lasso_r2 lasso_train_mse lasso_fista_iters lasso_converged cnn_epochs_ran cnn_mse_first cnn_mse_last
0 263 625 0.802597 0.000024 100 false 10 0.000057 0.000033
1 752 625 0.404450 0.000281 100 false 10 0.001501 0.000461
2 4234 625 0.702084 0.000007 100 false 10 0.000037 0.000016
3 3435 625 0.407264 0.000073 100 false 10 0.000090 0.000080
4 77 625 0.000000 0.000000 1 true 10 0.000000 0.000000
5 220 625 0.862858 0.000255 100 false 10 0.000369 0.000282
6 2395 625 0.361155 0.000154 100 false 10 0.000181 0.000158
7 14 625 0.000000 0.000000 1 true 10 0.000000 0.000000
8 534 625 0.979634 0.000611 100 false 10 0.005203 0.001029
9 232 625 0.743532 0.000002 100 false 10 0.000002 0.000002
10 108 625 0.785521 0.000010 100 false 10 0.000368 0.000025
# cnn_mse_by_epoch: cluster_id, epoch, train_mse
cluster_id epoch train_mse
0 0 0.000057
0 1 0.000048
0 2 0.000041
0 3 0.000036
0 4 0.000034
0 5 0.000033
0 6 0.000032
0 7 0.000033
0 8 0.000033
0 9 0.000033
1 0 0.001501
1 1 0.001135
1 2 0.000855
1 3 0.000673
1 4 0.000587
1 5 0.000569
1 6 0.000568
1 7 0.000551
1 8 0.000513
1 9 0.000461
2 0 0.000037
2 1 0.000024
2 2 0.000017
2 3 0.000016
2 4 0.000017
2 5 0.000019
2 6 0.000019
2 7 0.000019
2 8 0.000017
2 9 0.000016
3 0 0.000090
3 1 0.000087
3 2 0.000085
3 3 0.000083
3 4 0.000082
3 5 0.000081
3 6 0.000081
3 7 0.000080
3 8 0.000080
3 9 0.000080
4 0 0.000000
4 1 0.000000
4 2 0.000000
4 3 0.000000
4 4 0.000000
4 5 0.000000
4 6 0.000000
4 7 0.000000
4 8 0.000000
4 9 0.000000
5 0 0.000369
5 1 0.000351
5 2 0.000336
5 3 0.000323
5 4 0.000312
5 5 0.000303
5 6 0.000296
5 7 0.000290
5 8 0.000285
5 9 0.000282
6 0 0.000181
6 1 0.000176
6 2 0.000172
6 3 0.000169
6 4 0.000166
6 5 0.000163
6 6 0.000161
6 7 0.000160
6 8 0.000159
6 9 0.000158
7 0 0.000000
7 1 0.000000
7 2 0.000000
7 3 0.000000
7 4 0.000000
7 5 0.000000
7 6 0.000000
7 7 0.000000
7 8 0.000000
7 9 0.000000
8 0 0.005203
8 1 0.004159
8 2 0.003244
8 3 0.002480
8 4 0.001880
8 5 0.001451
8 6 0.001181
8 7 0.001044
8 8 0.001006
8 9 0.001029
9 0 0.000002
9 1 0.000002
9 2 0.000002
9 3 0.000002
9 4 0.000002
9 5 0.000002
9 6 0.000002
9 7 0.000002
9 8 0.000002
9 9 0.000002
10 0 0.000368
10 1 0.000291
10 2 0.000220
10 3 0.000157
10 4 0.000105
10 5 0.000065
10 6 0.000038
10 7 0.000024
10 8 0.000020
10 9 0.000025