sync EmbedEd artifacts (phase01-v6)

.gitattributes

@@ -51,3 +51,4 @@ artifacts/sprime/Clones[[:space:]]paper[[:space:]]replication[[:space:]]package[
 artifacts/corpus_emb.npy filter=lfs diff=lfs merge=lfs -text
 artifacts/runs/C0_13/predictions.npz filter=lfs diff=lfs merge=lfs -text
 artifacts/sprime_emb.npy filter=lfs diff=lfs merge=lfs -text
+artifacts/runs/C1_13/predictions.npz filter=lfs diff=lfs merge=lfs -text

artifacts/runs/C1_13/checkpoint.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d3654dbc9bacdb5f7095bfba59d9d2b193c232cf40f5865ddabe400da2bdb413
+size 498668483

artifacts/runs/C1_13/eval_config.json

@@ -0,0 +1,13 @@
+{
+  "condition": "C1",
+  "seed": 13,
+  "smoke": false,
+  "version": "phase01-v6",
+  "model_id": "microsoft/graphcodebert-base",
+  "pooling": "mean",
+  "max_len": 512,
+  "eval_batch": 64,
+  "threshold_policy": "max_f1_on_valid",
+  "pairs_source": "artifacts/pairs_{valid,test}.tsv",
+  "fingerprint": "7f55e0a750b2d1fc"
+}

artifacts/runs/C1_13/eval_metrics.json

@@ -0,0 +1,37 @@
+{
+  "condition": "C1",
+  "seed": 13,
+  "version": "phase01-v6",
+  "fingerprint": "7f55e0a750b2d1fc",
+  "smoke": false,
+  "model": "microsoft/graphcodebert-base + C1 seed 13 (step 4000)",
+  "threshold_policy": "max_f1_on_valid",
+  "threshold": 0.435805,
+  "valid": {
+    "precision": 0.7293,
+    "recall": 0.7682,
+    "f1": 0.7483,
+    "n": 415416
+  },
+  "valid_map_at_r": 0.6726,
+  "test_f1": 0.7454,
+  "test_precision": 0.7313,
+  "test_recall": 0.7602,
+  "test_map_at_r": 0.6672,
+  "test": {
+    "precision": 0.7313,
+    "recall": 0.7602,
+    "f1": 0.7454,
+    "tp": 43195,
+    "fp": 15875,
+    "fn": 13625,
+    "n": 415416
+  },
+  "n_fragments_encoded": 1685,
+  "n_pairs": {
+    "valid": 415416,
+    "test": 415416
+  },
+  "encode_seconds": 16.9,
+  "evaluated_utc": "2026-09-29T15:43:15Z"
+}

artifacts/runs/C1_13/metrics.json

@@ -0,0 +1,22 @@
+{
+  "condition": "C1",
+  "seed": 13,
+  "version": "phase01-v6",
+  "fingerprint": "867efb41561358b7",
+  "smoke": false,
+  "loss_final_mean": 0.015446,
+  "loss_last": 0.018189,
+  "steps": 4000,
+  "triples": 32000,
+  "epochs": 1,
+  "train_seconds": 2516.1,
+  "triples_per_s": 1.59,
+  "checkpoint": "/content/embeded-artifacts/runs/C1_13/checkpoint.pt",
+  "device": "cuda",
+  "checkpoint_reload": {
+    "tensors": 199,
+    "epoch": 1,
+    "step": 4000
+  },
+  "finished_utc": "2026-09-29T15:42:43Z"
+}

artifacts/runs/C1_13/predictions.npz

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:8081a668a7cbe4dd665d73e27c1a30884ab9e0820fb33b67b7bc39e80f204ce6
+size 3169484

artifacts/runs/C1_13/run_config.json

@@ -0,0 +1,38 @@
+{
+  "version": "phase01-v6",
+  "condition": "C1",
+  "seed": 13,
+  "smoke": false,
+  "model_id": "microsoft/graphcodebert-base",
+  "pooling": "mean",
+  "option": "A (token-only)",
+  "loss": "triplet",
+  "triplet_margin": 0.1,
+  "optimizer": "adamw",
+  "lr": 2e-05,
+  "weight_decay": 0.01,
+  "warmup_steps": 100,
+  "grad_clip": 1.0,
+  "batch": 8,
+  "epochs": 1,
+  "max_len": 512,
+  "amp_dtype": "float16",
+  "grad_checkpoint": false,
+  "k_negatives": 20,
+  "train_pairs_cap": 32000,
+  "threshold_policy": "max_f1_on_valid",
+  "seed_list": [
+    13,
+    14,
+    15
+  ],
+  "artifacts": {
+    "fragments.jsonl": "9cbcb4fce6b1a2dc",
+    "mining_summary.json": "01c2ae953b6da617",
+    "corpus_emb.meta.json": "afd86a6a44713aa2",
+    "triples_C1.jsonl": "c03e4f2884aeabc6",
+    "triples_C2.jsonl": "2808d153017b1396",
+    "triples_C3.jsonl": "eb65c51b04535db2"
+  },
+  "fingerprint": "867efb41561358b7"
+}

artifacts/runs/smoke_C1_13/checkpoint.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:98094e5f74620154e115a2ebea4cc489dee05ad34e8bb9390185644a056c6c98
+size 498668483

artifacts/runs/smoke_C1_13/eval_config.json

@@ -0,0 +1,13 @@
+{
+  "condition": "C1",
+  "seed": 13,
+  "smoke": true,
+  "version": "phase01-v6",
+  "model_id": "microsoft/graphcodebert-base",
+  "pooling": "mean",
+  "max_len": 64,
+  "eval_batch": 64,
+  "threshold_policy": "max_f1_on_valid",
+  "pairs_source": "artifacts/pairs_{valid,test}.tsv",
+  "fingerprint": "674b99f41fcfcf99"
+}

artifacts/runs/smoke_C1_13/eval_metrics.json

@@ -0,0 +1,37 @@
+{
+  "condition": "C1",
+  "seed": 13,
+  "version": "phase01-v6",
+  "fingerprint": "674b99f41fcfcf99",
+  "smoke": true,
+  "model": "microsoft/graphcodebert-base + C1 seed 13 (step 6)",
+  "threshold_policy": "max_f1_on_valid",
+  "threshold": 0.768475,
+  "valid": {
+    "precision": 0.5079,
+    "recall": 1.0,
+    "f1": 0.6737,
+    "n": 64
+  },
+  "valid_map_at_r": 0.3722,
+  "test_f1": 0.6383,
+  "test_precision": 0.4839,
+  "test_recall": 0.9375,
+  "test_map_at_r": 0.5159,
+  "test": {
+    "precision": 0.4839,
+    "recall": 0.9375,
+    "f1": 0.6383,
+    "tp": 30,
+    "fp": 32,
+    "fn": 2,
+    "n": 64
+  },
+  "n_fragments_encoded": 223,
+  "n_pairs": {
+    "valid": 64,
+    "test": 64
+  },
+  "encode_seconds": 0.6,
+  "evaluated_utc": "2026-09-29T14:59:57Z"
+}

artifacts/runs/smoke_C1_13/metrics.json

@@ -0,0 +1,22 @@
+{
+  "condition": "C1",
+  "seed": 13,
+  "version": "phase01-v6",
+  "fingerprint": "fee0047c9d5b9820",
+  "smoke": true,
+  "loss_final_mean": 0.065669,
+  "loss_last": 0.05037,
+  "steps": 6,
+  "triples": 24,
+  "epochs": 1,
+  "train_seconds": 12.7,
+  "triples_per_s": 0.47,
+  "checkpoint": "/content/embeded-artifacts/runs/smoke_C1_13/checkpoint.pt",
+  "device": "cuda",
+  "checkpoint_reload": {
+    "tensors": 199,
+    "epoch": 1,
+    "step": 6
+  },
+  "finished_utc": "2026-09-29T14:59:53Z"
+}

artifacts/runs/smoke_C1_13/run_config.json

@@ -0,0 +1,39 @@
+{
+  "version": "phase01-v6",
+  "condition": "C1",
+  "seed": 13,
+  "smoke": true,
+  "model_id": "microsoft/graphcodebert-base",
+  "pooling": "mean",
+  "option": "A (token-only)",
+  "loss": "triplet",
+  "triplet_margin": 0.1,
+  "optimizer": "adamw",
+  "lr": 2e-05,
+  "weight_decay": 0.01,
+  "warmup_steps": 0,
+  "grad_clip": 1.0,
+  "batch": 4,
+  "epochs": 1,
+  "max_len": 64,
+  "amp_dtype": "float32",
+  "grad_checkpoint": false,
+  "k_negatives": 20,
+  "train_pairs_cap": 32000,
+  "threshold_policy": "max_f1_on_valid",
+  "seed_list": [
+    13,
+    14,
+    15
+  ],
+  "artifacts": {
+    "fragments.jsonl": "9cbcb4fce6b1a2dc",
+    "mining_summary.json": "01c2ae953b6da617",
+    "corpus_emb.meta.json": "afd86a6a44713aa2",
+    "triples_C1.jsonl": "c03e4f2884aeabc6",
+    "triples_C2.jsonl": "2808d153017b1396",
+    "triples_C3.jsonl": "eb65c51b04535db2"
+  },
+  "max_triples": 24,
+  "fingerprint": "fee0047c9d5b9820"
+}

artifacts/runs/smoke_C1_13/train_log.jsonl

@@ -0,0 +1,6 @@
+{"epoch": 0, "step": 1, "loss": 0.08694763481616974, "triples_per_s": 0.9930305859189756}
+{"epoch": 0, "step": 2, "loss": 0.060024186968803406, "triples_per_s": 1.6727525213600478}
+{"epoch": 0, "step": 3, "loss": 0.08667010068893433, "triples_per_s": 2.161775393006746}
+{"epoch": 0, "step": 4, "loss": 0.060231611132621765, "triples_per_s": 2.5405343033586347}
+{"epoch": 0, "step": 5, "loss": 0.04977096617221832, "triples_per_s": 2.845025195708488}
+{"epoch": 0, "step": 6, "loss": 0.05037008225917816, "triples_per_s": 3.086924026620398}

sync_manifest.json

@@ -1,6 +1,6 @@
 {
   "version": "phase01-v6",
-  "synced_at_utc": "2026-09-29T14:59:05Z",
+  "synced_at_utc": "2026-09-29T15:43:27Z",
   "staged_files": [
     "artifacts/audit/audit_key.csv",
     "artifacts/audit/audit_labels.csv",
@@ -22,6 +22,20 @@
     "artifacts/runs/C0_13/eval_config.json",
     "artifacts/runs/C0_13/eval_metrics.json",
     "artifacts/runs/C0_13/predictions.npz",
+    "artifacts/runs/C1_13/checkpoint.pt",
+    "artifacts/runs/C1_13/eval_config.json",
+    "artifacts/runs/C1_13/eval_metrics.json",
+    "artifacts/runs/C1_13/metrics.json",
+    "artifacts/runs/C1_13/predictions.npz",
+    "artifacts/runs/C1_13/run_config.json",
+    "artifacts/runs/C1_13/train_log.jsonl",
+    "artifacts/runs/smoke_C1_13/checkpoint.pt",
+    "artifacts/runs/smoke_C1_13/eval_config.json",
+    "artifacts/runs/smoke_C1_13/eval_metrics.json",
+    "artifacts/runs/smoke_C1_13/metrics.json",
+    "artifacts/runs/smoke_C1_13/predictions.npz",
+    "artifacts/runs/smoke_C1_13/run_config.json",
+    "artifacts/runs/smoke_C1_13/train_log.jsonl",
     "artifacts/runs/sprime_C1_13/checkpoint.pt",
     "artifacts/runs/sprime_C1_13/eval_config.json",
     "artifacts/runs/sprime_C1_13/eval_metrics.json",
@@ -55,8 +69,7 @@
     "artifacts/v5-backup/mining_summary.json",
     "artifacts/v5-backup/triples_C1.jsonl",
     "artifacts/v5-backup/triples_C2.jsonl",
-    "artifacts/v5-backup/triples_C3.jsonl",
-    "report/measurements.md"
+    "artifacts/v5-backup/triples_C3.jsonl"
   ],
   "excluded_patterns": [
     "sprime/*",