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process.sh

@@ -1,33 +1,48 @@
-#!/bin/bash
+#!/bin/sh
+#
+#SBATCH --account=glab
+#SBATCH -N 1
+#SBATCH -c 24
+#SBATCH --mem=100gb
+#SBATCH --time=05-00:00
 
 # Base URL for the chunked files
-BASE_URL="https://huggingface.co/datasets/juannat7/ChaosBench/resolve/main/$1/"
+BASE_URL="https://huggingface.co/datasets/LEAP/ChaosBench/resolve/main/$1/"
 
 # The base name of the files (without extension)
 BASE_NAME="$1_chunks"
 
 # Extension for the chunked files
-EXTENSION="zip"
+EXTENSION="tar.gz"
 
 # Download all chunked files
-wget "${BASE_URL}${BASE_NAME}.${EXTENSION}"
-for i in $(seq -f "%02g" 1 99); do
-    FILE_NAME="${BASE_URL}${BASE_NAME}.z${i}"
-    wget "${FILE_NAME}" || break
+for prefix in {a..z}; do
+    for suffix in {a..z}; do
+        FILE_NAME="${BASE_NAME}.${EXTENSION}.${prefix}${suffix}"
+        wget "${BASE_URL}${FILE_NAME}" || break 2
+    done
 done
 
 # Combine the chunked files
-zip -F "${BASE_NAME}.${EXTENSION}" --out "$1".zip
+cat ${BASE_NAME}.${EXTENSION}.* > "$1".tar.gz
 
 # Remove the chunked files
-rm "${BASE_NAME}.${EXTENSION}"
-for i in $(seq -f "%02g" 1 99); do
-    rm "${BASE_NAME}.z${i}" || break
-done
+rm ${BASE_NAME}.${EXTENSION}.*
+
+# Extract the combined file
+echo "EXTRACTING FOLDER, THIS MAY TAKE A WHILE..."
+if [ "$2" == "with_pigz" ]; then
+    echo "Use pigz for parallel decompression..."
+    pigz -dc "$1".tar.gz | tar -xf -
+else
+    # Use standard tar for decompression
+    tar -xzf "$1".tar.gz
+fi
+
+# Remove the combined compressed file
+rm "$1".tar.gz
 
-# Unzip the combined file
-unzip "$1".zip
+# Rename folder
+mv "$1"_tmp "$1"
 
-# Remove the combined zip file
-rm "$1".zip