PAMdata/process_scripts/Generate_splitID.py

import numpy as np

# arr_outcomes = np.load('../processed_data/arr_outcomes.npy', allow_pickle=True)

# split randomization over folds
"""Use 9:1:1 split"""
p_train = 0.80
p_val   = 0.10
p_test  = 0.10


n =  11988  # original 12000 patients, remove 12 outliers
n_train = round(n*p_train)
n_val   = round(n*p_val)
n_test  = n - (n_train+n_val)
print(n_train, n_val, n_test)
Nsplits = 5
for j in range(Nsplits):
    p = np.random.permutation(n)
    idx_train = p[:n_train]
    idx_val   = p[n_train:n_train+n_val]
    idx_test  = p[n_train+n_val:]
    np.save('../splits/phy12_split'+str(j+1)+'.npy', (idx_train, idx_val, idx_test))

    # np.save('../splits/phy12_split_subset'+str(j+1)+'.npy', (idx_train, idx_val, idx_test))
print('split IDs saved')

# # check first split
# idx_train,idx_val,idx_test = np.load('../splits/phy12_split1.npy', allow_pickle=True)
# print(len(idx_train), len(idx_val), len(idx_test))