diff --git a/method_inputs/a1/BOT_X10_1K/r00000002/n32/meta.json b/method_inputs/a1/BOT_X10_1K/r00000002/n32/meta.json index 4390735061d00b3705b9ee7e7516dfbcc5ccc90f..f241cb23c721714d021bee28a48206cf126459a8 100644 --- a/method_inputs/a1/BOT_X10_1K/r00000002/n32/meta.json +++ b/method_inputs/a1/BOT_X10_1K/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 57772, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e", "canonical_id": "69c2952ec112051356e0bc0c56cfc53d13246ef334cf4942f54937de883d1abc:00000002", @@ -50,7 +50,7 @@ "view.bcf": "2187a5b10e92006c8920d977d64ab69cf55030ba12553f6657f8cfaff2f8ee0f", "view.bcf.csi": "6e39698a2b83d54c2af1db5b7f0b9bf58a4f008861f42e1181b53cdaedbfb64b" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "7e788e9aed078cd8d6f10ff85d8c9e0f669e330dce2f8a2068bedb606450729f", "ladder_columns": [ 23, diff --git a/method_inputs/a1/BOT_X10_1K/r00000003/n32/meta.json b/method_inputs/a1/BOT_X10_1K/r00000003/n32/meta.json index 6b49da1b02c8da0cac63c6866c970f5781f45063..2d0d97d30a8cf393b15c23e00e28136e317bb913 100644 --- a/method_inputs/a1/BOT_X10_1K/r00000003/n32/meta.json +++ b/method_inputs/a1/BOT_X10_1K/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 56277, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e", "canonical_id": "69c2952ec112051356e0bc0c56cfc53d13246ef334cf4942f54937de883d1abc:00000003", @@ -50,7 +50,7 @@ "view.bcf": "54a9ce62db59a51545693850d04ab9f484e570b8107a6a46343fe78e0d275308", "view.bcf.csi": "733b5447a0e95127ef21ae920c78d7f5b08e2be59326af5833e0d338bd67583d" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "7e788e9aed078cd8d6f10ff85d8c9e0f669e330dce2f8a2068bedb606450729f", "ladder_columns": [ 35, diff --git a/method_inputs/a1/BOT_X10_1K/r00000004/n32/meta.json b/method_inputs/a1/BOT_X10_1K/r00000004/n32/meta.json index 7cc2bc54c4eb376d4860dead960954f3646779cf..869b5e89af99c3a28ebdb04be008dcb63e9c2625 100644 --- a/method_inputs/a1/BOT_X10_1K/r00000004/n32/meta.json +++ b/method_inputs/a1/BOT_X10_1K/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 55503, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e", "canonical_id": "69c2952ec112051356e0bc0c56cfc53d13246ef334cf4942f54937de883d1abc:00000004", @@ -50,7 +50,7 @@ "view.bcf": "fc7e2b4373ec833881df4c40cbb9cbd0be55d305330b67df3f14a868ff0567e8", "view.bcf.csi": "464cce494daf0b7a396730b612e1319c28e53513fa0dc80e8bcdf4b2111034ac" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "50b76cce2d55af19a51d7f1a1340770703629e1a79725a0ac0218114de100fde", "ladder_columns": [ 22, diff --git a/method_inputs/a1/BOT_X10_1K/r00000005/n32/meta.json b/method_inputs/a1/BOT_X10_1K/r00000005/n32/meta.json index f91e12f09c1a87af860946913ed5bb23cf805bf0..98ffea7722781d8516698278ebd5d692415e3e4d 100644 --- a/method_inputs/a1/BOT_X10_1K/r00000005/n32/meta.json +++ b/method_inputs/a1/BOT_X10_1K/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 54697, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e", "canonical_id": "69c2952ec112051356e0bc0c56cfc53d13246ef334cf4942f54937de883d1abc:00000005", @@ -50,7 +50,7 @@ "view.bcf": "6a86e68471f3f857c03564d2392e5f9b7fd798c10c76024c8a259df5641fc8f0", "view.bcf.csi": "4c1cffc5385660c19c372e592bad46ac741d24c33434af0d217efa574298e236" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "50b76cce2d55af19a51d7f1a1340770703629e1a79725a0ac0218114de100fde", "ladder_columns": [ 8, diff --git a/method_inputs/a1/BOT_X10_1K/r00000006/n32/meta.json b/method_inputs/a1/BOT_X10_1K/r00000006/n32/meta.json index 963cfbd1f1947a308e046cf0e77f2b6ee6fa61c5..0f17fa991ba2a535c1f0dc5d8192f95b117e1ead 100644 --- a/method_inputs/a1/BOT_X10_1K/r00000006/n32/meta.json +++ b/method_inputs/a1/BOT_X10_1K/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 54595, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e", "canonical_id": "69c2952ec112051356e0bc0c56cfc53d13246ef334cf4942f54937de883d1abc:00000006", @@ -50,7 +50,7 @@ "view.bcf": "8a98f6bc637a8a567e728f05a5bcd7f5a72e71bdace54e9bbcbb81616c062601", "view.bcf.csi": "72c193c123d9f65eb0a7948ea84ec8d3917d274f3beafd9f08bed381777d2801" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "50b76cce2d55af19a51d7f1a1340770703629e1a79725a0ac0218114de100fde", "ladder_columns": [ 60, diff --git a/method_inputs/a1/BOT_X10_1K/r00000007/n32/meta.json b/method_inputs/a1/BOT_X10_1K/r00000007/n32/meta.json index 8e570d7a1cae8e8a55e6ed9c2399aadf473de0a2..a7c3cbaff2d0349cd7e9dbabb372516cf416511c 100644 --- a/method_inputs/a1/BOT_X10_1K/r00000007/n32/meta.json +++ b/method_inputs/a1/BOT_X10_1K/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 56003, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e", "canonical_id": "69c2952ec112051356e0bc0c56cfc53d13246ef334cf4942f54937de883d1abc:00000007", @@ -50,7 +50,7 @@ "view.bcf": "e70f9cbc9ade2eaf9f0d15e917151e957555ad81634526d3859cc790fbaf0554", "view.bcf.csi": "0691ee9b3277149e0ef8f87fdcaac66a185dc7f992674118318b6ec300591506" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "50b76cce2d55af19a51d7f1a1340770703629e1a79725a0ac0218114de100fde", "ladder_columns": [ 31, diff --git a/method_inputs/a1/BOT_X10_1K/receipts/export_51933154.json b/method_inputs/a1/BOT_X10_1K/receipts/export_51933154.json index ce7281531e39548dfe99521bf64e04b45e40ba30..77eebff5c2a7450d4ef66618a99f5041e61fd99d 100644 --- a/method_inputs/a1/BOT_X10_1K/receipts/export_51933154.json +++ b/method_inputs/a1/BOT_X10_1K/receipts/export_51933154.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_BOT_X10_1K", "host": "cn113-35-l", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/receipts/identity_scan_51933154.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/receipts/identity_scan_51933154.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "dbef2ab7b039056137f5814e1f22f0cc523c778e9bce0f45640ca2fd51712feb" + "sha256": "2e07e40607263c5df3561e58a4946b39054bce3d75cd1c0b4b1d46109276ccae" }, "job": "51933154", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/receipts/open_audit_51933154.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/receipts/open_audit_51933154.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/n32", "files": { "multihetsep.txt": "a7142f905c9848946b20c399ac2524fd6775208568a0be5ed4ec97e68a7703af", "phlash_contig.npz": "c78e6a67f1dcbb7b16a63c7526459330066804ef34035fb3e6c8137bf2b489c1", @@ -54,7 +54,7 @@ "view.bcf": "9272d182358374ed5074455e0ad75ea2a95c6f65ec7fba2f654d4567070ff58e", "view.bcf.csi": "623dc5eff4262d2158dd2b1e60ef279577e566aa7162f0d7c46fe803fe81a7bc" }, - "meta_sha256": "fa53cc1aab38703e244fef5e0a83c06a855af4a165d312f73610f124d5b24581", + "meta_sha256": "557bc98188008017dcff1cf561019cd3d2f1ec4f95716875911777f740dcb63c", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000001/n32", "files": { "multihetsep.txt": "a085a1f06414cb74512a70adf9118d330491d9df151c9c53c5f8cd1d1b83b045", "phlash_contig.npz": "0b89f622f5b91e0ad7be0a71ebd1afc4b6ef1d1ce5c5e8dde6d374eb03b36fdf", @@ -93,7 +93,7 @@ "view.bcf": "9313efb54d5f9c573a27efe5cc372e18ed3722364b6d95d740f17e55d63b7bc8", "view.bcf.csi": "90d1c365c4108e81e5daf93aa22ee99062ac635499f48b4f330674029c37443a" }, - "meta_sha256": "8476230f213a5fd5a8c8216076bf3128b6d31e6fad05b72b16954eb0900020cb", + "meta_sha256": "dba13b945c8a2d4742e9f291eaa59427466b79247c36576599759c6ed0f3f54d", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000002/n32", "files": { "multihetsep.txt": "1cdeb281228af7513a602dc5e56c847a9cb76f575065d0cc9b7fdf0e76f6111b", "phlash_contig.npz": "ce5f5b644dde63f8b76e55c2eae71092ced31c1ba9db6194f13c582392f4399a", @@ -132,7 +132,7 @@ "view.bcf": "2187a5b10e92006c8920d977d64ab69cf55030ba12553f6657f8cfaff2f8ee0f", "view.bcf.csi": "6e39698a2b83d54c2af1db5b7f0b9bf58a4f008861f42e1181b53cdaedbfb64b" }, - "meta_sha256": "6c70795e040bc4f120f71195cd36ca0ecb6f5c6079a8ab3e59715db6e3cb040c", + "meta_sha256": "e66a536403f6dad296d8c3a010c977625248c42114dbbeddd34defd3630a97f7", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000003/n32", "files": { "multihetsep.txt": "5ed3539810ce49cb7657037071ef090c34f73700ddcb91d412bf4495c4cf80b8", "phlash_contig.npz": "fb73feb38e9aa047644adf315795ae09aaead19657a3b5f0a790b3c97513aa76", @@ -171,7 +171,7 @@ "view.bcf": "54a9ce62db59a51545693850d04ab9f484e570b8107a6a46343fe78e0d275308", "view.bcf.csi": "733b5447a0e95127ef21ae920c78d7f5b08e2be59326af5833e0d338bd67583d" }, - "meta_sha256": "80512f8c9ba377e3446be7124d1cdf67e8a6d19052f552643bf57736cef8350d", + "meta_sha256": "29a6d671554da2d5caf1dc4d5d323719f56c8f6e12799b80f63af79303fd9e43", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000004/n32", "files": { "multihetsep.txt": "62a9d1e6950cd6b9a7dbfa50fda9a96578820b3dabc1f371015342988eb205c0", "phlash_contig.npz": "5951266799cfc7361d9e8d16c7d0fc2302486d87af067d1132c302e7fab74f58", @@ -210,7 +210,7 @@ "view.bcf": "fc7e2b4373ec833881df4c40cbb9cbd0be55d305330b67df3f14a868ff0567e8", "view.bcf.csi": "464cce494daf0b7a396730b612e1319c28e53513fa0dc80e8bcdf4b2111034ac" }, - "meta_sha256": "e16c89c76179bc452e8b85ba4237ae106e87ea3722dab2764d99fbf7703b0b3d", + "meta_sha256": "87ea71dedadb7412c1acc41be301a7a89a998c1e4d73b3796e271e0d93e77cd6", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000005/n32", "files": { "multihetsep.txt": "d9c2820c986722a569c2c4e80deea002fd6828e3a311457881c3f7313ea3ecf6", "phlash_contig.npz": "4591468dbf720bedda4d7d398f1fffe38f94e0099b9c0f20396f46320d7db805", @@ -249,7 +249,7 @@ "view.bcf": "6a86e68471f3f857c03564d2392e5f9b7fd798c10c76024c8a259df5641fc8f0", "view.bcf.csi": "4c1cffc5385660c19c372e592bad46ac741d24c33434af0d217efa574298e236" }, - "meta_sha256": "1879ba61bb7f602b7c699e9aa8522a0bae9e9dfd424edfa0bfeee7d5599edc40", + "meta_sha256": "f3c3d5b8083e61929e2a91b2b1eae854ff57198729a24500cc7027628eb3a5aa", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000006/n32", "files": { "multihetsep.txt": "31f0274ffc745f9f2e2603e71318320ac7bcaf3fa4cc4f52af540d6b42ce96db", "phlash_contig.npz": "2bf3accb07a04162028d2e51d09b6127db492046490c3002fa902f8a03b47e17", @@ -288,7 +288,7 @@ "view.bcf": "8a98f6bc637a8a567e728f05a5bcd7f5a72e71bdace54e9bbcbb81616c062601", "view.bcf.csi": "72c193c123d9f65eb0a7948ea84ec8d3917d274f3beafd9f08bed381777d2801" }, - "meta_sha256": "6ac4f5bc8d6d40d753cc669791fb7b54ce53b9a5ca70e4a749e2d5826475ec91", + "meta_sha256": "f10096e1f158b87b68c5f5e18074b7afcf647577f3faf8c6899c5b8a02b7c6e7", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "688854533044cd063dbfdc2f3f0e3f7f63a813f1e6f11f8c765be09227bbcc3e", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/n32", "files": { "multihetsep.txt": "1a478595e42cae8a835bba8f0021fd4cce1c24f45009fff6d5ef8bb90348807c", "phlash_contig.npz": "307890d077cba5d0453f09bcdffed9c2b528fc6cded2a5893c033b07fae63d44", @@ -327,7 +327,7 @@ "view.bcf": "e70f9cbc9ade2eaf9f0d15e917151e957555ad81634526d3859cc790fbaf0554", "view.bcf.csi": "0691ee9b3277149e0ef8f87fdcaac66a185dc7f992674118318b6ec300591506" }, - "meta_sha256": "95513577884e55624db4cf6af6b8dbc6671a8ffa931169f3dc179813356ea6b9", + "meta_sha256": "cb14ded9394102895f32ba59b6c9e88ff8735f30827f488bd21d7854920a9d5b", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/BOT_X10_1K/receipts/identity_scan_51933154.json b/method_inputs/a1/BOT_X10_1K/receipts/identity_scan_51933154.json index 7b2640de06c722b99b477e56b1547d4fdef75293..dad77011da18b16f3fd8c45a1617b3bca77afeb3 100644 --- a/method_inputs/a1/BOT_X10_1K/receipts/identity_scan_51933154.json +++ b/method_inputs/a1/BOT_X10_1K/receipts/identity_scan_51933154.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "69c2952ec112051356e0bc0c56cfc53d13246ef334cf4942f54937de883d1abc" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T10:58:25Z" diff --git a/method_inputs/a1/BOT_X10_1K/receipts/open_audit_51933154.json b/method_inputs/a1/BOT_X10_1K/receipts/open_audit_51933154.json index 8ef758a7e5efcc070fd589ca6f3b8715d064ffca..038aade0e9b2a6cc77e2fa0643c787cefa40b44a 100644 --- a/method_inputs/a1/BOT_X10_1K/receipts/open_audit_51933154.json +++ b/method_inputs/a1/BOT_X10_1K/receipts/open_audit_51933154.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/receipts/identity_scan_51933154.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/receipts/identity_scan_51933154.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_1K/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/.n32.tmp-zkpsrhdr/view.vcf" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/.n32.tmp-zkpsrhdr/view.vcf" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/.n32.tmp-zkpsrhdr/phlash_contig.npz" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/.n32.tmp-zkpsrhdr/phlash_contig.npz" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/.n32.tmp-zkpsrhdr/sfs_unfolded.npy" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/.n32.tmp-zkpsrhdr/sfs_unfolded.npy" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/.n32.tmp-zkpsrhdr/multihetsep.txt" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/.n32.tmp-zkpsrhdr/multihetsep.txt" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/.n32.tmp-zkpsrhdr/view.bcf" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/.n32.tmp-zkpsrhdr/view.bcf" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/.n32.tmp-zkpsrhdr/phlash_contig.npz" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/.n32.tmp-zkpsrhdr/phlash_contig.npz" }, { "mode": "r", - 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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/n32/sfs_unfolded.npy" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/n32/sfs_unfolded.npy" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/n32/view.bcf" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/n32/view.bcf" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/v0_n32.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000000/v0_n32.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_1K/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - 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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/.n32.tmp-qt3h_pg0/phlash_contig.npz" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/.n32.tmp-qt3h_pg0/phlash_contig.npz" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/.n32.tmp-qt3h_pg0/sfs_unfolded.npy" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/.n32.tmp-qt3h_pg0/sfs_unfolded.npy" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/.n32.tmp-qt3h_pg0/multihetsep.txt" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/.n32.tmp-qt3h_pg0/multihetsep.txt" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/.n32.tmp-qt3h_pg0/view.bcf" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/.n32.tmp-qt3h_pg0/view.bcf" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/.n32.tmp-qt3h_pg0/phlash_contig.npz" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/.n32.tmp-qt3h_pg0/phlash_contig.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/.n32.tmp-qt3h_pg0/sfs_unfolded.npy" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/.n32.tmp-qt3h_pg0/sfs_unfolded.npy" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/.n32.tmp-qt3h_pg0/meta.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/.n32.tmp-qt3h_pg0/meta.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/n32/phlash_contig.npz" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/n32/phlash_contig.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/n32/sfs_unfolded.npy" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/n32/sfs_unfolded.npy" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/n32/phlash_contig.npz" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/n32/phlash_contig.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/n32/sfs_unfolded.npy" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/n32/sfs_unfolded.npy" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/n32/view.bcf" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/n32/view.bcf" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/v0_n32.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/r00000007/v0_n32.json" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/receipts/export_51933154.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_1K/receipts/export_51933154.json" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/events.log" + "path": "$WORK/bench_h2h_20260915/events.log" } ], "purposes": [ diff --git a/method_inputs/a1/BOT_X10_20K/r00000000/n32/meta.json b/method_inputs/a1/BOT_X10_20K/r00000000/n32/meta.json index 3add526df8416100fda8539e9f02aff86220e390..de8c3e46cacdda90b16c99dee22ee431d0574dbf 100644 --- a/method_inputs/a1/BOT_X10_20K/r00000000/n32/meta.json +++ b/method_inputs/a1/BOT_X10_20K/r00000000/n32/meta.json @@ -2,7 +2,7 @@ "S": 57317, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2", "canonical_id": "d9806762328a74204e05234d02fa8fc6222e8fc7b86654c130d4c8aaf2d7646a:00000000", @@ -50,7 +50,7 @@ "view.bcf": "fa472ff2063de525c9dbeb8904899a1790de0f2f7b3037cbf2ff62f65c4f4d12", "view.bcf.csi": "beb928c5913726216c4d4de34d23398b12ce977e803e182f553808cad2166666" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "5982ee7d2311a2af5d0945dadba2683425709d09c32319e475c5d148fa945aa4", "ladder_columns": [ 39, diff --git a/method_inputs/a1/BOT_X10_20K/r00000001/n32/meta.json b/method_inputs/a1/BOT_X10_20K/r00000001/n32/meta.json index b3514d9e1579a48a62a94e9ac5a6add75e109090..243425793dc860d23bfceef01b93add2f299a3de 100644 --- a/method_inputs/a1/BOT_X10_20K/r00000001/n32/meta.json +++ b/method_inputs/a1/BOT_X10_20K/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 57334, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2", "canonical_id": "d9806762328a74204e05234d02fa8fc6222e8fc7b86654c130d4c8aaf2d7646a:00000001", @@ -50,7 +50,7 @@ "view.bcf": "eee0be91315ac0b1d9b6d689a67099869f4d146b97e3bc7d9b9b5124279070c4", "view.bcf.csi": "9c05d1bb27a5bad4ffb99c789050b87c68166d4533bcc5dd5aa5c5a376e7aac4" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "5982ee7d2311a2af5d0945dadba2683425709d09c32319e475c5d148fa945aa4", "ladder_columns": [ 16, diff --git a/method_inputs/a1/BOT_X10_20K/r00000002/n32/meta.json b/method_inputs/a1/BOT_X10_20K/r00000002/n32/meta.json index 3b4c89b2a0ff0535222f66eb515fa59ac8936c34..20cfa7f61afb4a333b065a9876ad43b7eaab1929 100644 --- a/method_inputs/a1/BOT_X10_20K/r00000002/n32/meta.json +++ b/method_inputs/a1/BOT_X10_20K/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 56855, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2", "canonical_id": "d9806762328a74204e05234d02fa8fc6222e8fc7b86654c130d4c8aaf2d7646a:00000002", @@ -50,7 +50,7 @@ "view.bcf": "333e58de9e2bdc3179c0288a836f72e344a538073a7024a0a9e691c32b7b5bc2", "view.bcf.csi": "03c8ec0f8d5aa6d0818f873690cdd9a6aff8c06dfe45a83b7474c1a1702b68c8" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "5982ee7d2311a2af5d0945dadba2683425709d09c32319e475c5d148fa945aa4", "ladder_columns": [ 23, diff --git a/method_inputs/a1/BOT_X10_20K/r00000003/n32/meta.json b/method_inputs/a1/BOT_X10_20K/r00000003/n32/meta.json index 2277b8793f214bdf4b77f1a241aaed38d328369e..373254934fc0833869f62703be97bfc4938d9e0a 100644 --- a/method_inputs/a1/BOT_X10_20K/r00000003/n32/meta.json +++ b/method_inputs/a1/BOT_X10_20K/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 56384, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2", "canonical_id": "d9806762328a74204e05234d02fa8fc6222e8fc7b86654c130d4c8aaf2d7646a:00000003", @@ -50,7 +50,7 @@ "view.bcf": "286b4f860805ca80ce9835d665be2ff72995733b15e6938a3e14dfcf6a04880d", "view.bcf.csi": "079e1cde6dd98a3373248f1bb9f4c0649f1be8a39c733b7c48b2fc6455e6ea03" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "5982ee7d2311a2af5d0945dadba2683425709d09c32319e475c5d148fa945aa4", "ladder_columns": [ 35, diff --git a/method_inputs/a1/BOT_X10_20K/r00000004/n32/meta.json b/method_inputs/a1/BOT_X10_20K/r00000004/n32/meta.json index 87149cd6870ccdb0504fff18d84626ceff7d2dba..dfe2b33790ea4a38d5413dbde6a67b851d7d030e 100644 --- a/method_inputs/a1/BOT_X10_20K/r00000004/n32/meta.json +++ b/method_inputs/a1/BOT_X10_20K/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 56646, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2", "canonical_id": "d9806762328a74204e05234d02fa8fc6222e8fc7b86654c130d4c8aaf2d7646a:00000004", @@ -50,7 +50,7 @@ "view.bcf": "8ef94150f12c71524fe807024323b6655e8757982119259a6fbc6908055aeb27", "view.bcf.csi": "3fa1bba665c8e73d02ec148cd1b4ece1ed7a2a5e3e007fa14fcf1010c5c58430" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "417fa3697126c437b38f11ad875cbab69a1ee5f7139e792ca3c1daa90c6c070d", "ladder_columns": [ 22, diff --git a/method_inputs/a1/BOT_X10_20K/r00000005/n32/meta.json b/method_inputs/a1/BOT_X10_20K/r00000005/n32/meta.json index 90f99231be2a16fd648737e5e0d967caaff6b7b5..2051424e29ba3f38711b1b27fafc3caa2105ad17 100644 --- a/method_inputs/a1/BOT_X10_20K/r00000005/n32/meta.json +++ b/method_inputs/a1/BOT_X10_20K/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 57670, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2", "canonical_id": "d9806762328a74204e05234d02fa8fc6222e8fc7b86654c130d4c8aaf2d7646a:00000005", @@ -50,7 +50,7 @@ "view.bcf": "4082571624f96746a2901149d5d8ffdc9986eea30a04bc2f82f9983a9c0d6e15", "view.bcf.csi": "622dd470c86461759e47369790d14d511587f982ba61f0ba97cc0d4ace67f522" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "417fa3697126c437b38f11ad875cbab69a1ee5f7139e792ca3c1daa90c6c070d", "ladder_columns": [ 8, diff --git a/method_inputs/a1/BOT_X10_20K/r00000006/n32/meta.json b/method_inputs/a1/BOT_X10_20K/r00000006/n32/meta.json index de510524f243cb93e911186e914e8351eacfb4d1..f2e92cda7277fb5e17c6b8b76d3cf873531d1b0d 100644 --- a/method_inputs/a1/BOT_X10_20K/r00000006/n32/meta.json +++ b/method_inputs/a1/BOT_X10_20K/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 56825, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2", "canonical_id": "d9806762328a74204e05234d02fa8fc6222e8fc7b86654c130d4c8aaf2d7646a:00000006", @@ -50,7 +50,7 @@ "view.bcf": "56ad35f69389ff6acaff99b0111404cfc541c9153e884a54438b310aaf7bdc18", "view.bcf.csi": "00ec393e34e3b570355998f4be73337242381c3fb5b0126c1527e3ca70460fc7" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "417fa3697126c437b38f11ad875cbab69a1ee5f7139e792ca3c1daa90c6c070d", "ladder_columns": [ 60, diff --git a/method_inputs/a1/BOT_X10_20K/r00000007/n32/meta.json b/method_inputs/a1/BOT_X10_20K/r00000007/n32/meta.json index 32bdec5b137da3ff6f8cd96a22050285329510e4..7e122d84bb933e149061cebf7b185029ca651928 100644 --- a/method_inputs/a1/BOT_X10_20K/r00000007/n32/meta.json +++ b/method_inputs/a1/BOT_X10_20K/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 57761, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2", "canonical_id": "d9806762328a74204e05234d02fa8fc6222e8fc7b86654c130d4c8aaf2d7646a:00000007", @@ -50,7 +50,7 @@ "view.bcf": "db3b9e29245475a42678f80740243ea9222c83ce0bbf0487bdb51953c6d9c763", "view.bcf.csi": "9b3b56d2e4020429a70e8bc80cb6fe0d4c3a1e8c988da259eeeb18f5bbf01995" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "417fa3697126c437b38f11ad875cbab69a1ee5f7139e792ca3c1daa90c6c070d", "ladder_columns": [ 31, diff --git a/method_inputs/a1/BOT_X10_20K/receipts/export_51933433.json b/method_inputs/a1/BOT_X10_20K/receipts/export_51933433.json index 9047f820764fbe05f27cfac008eddf765d563053..4667d9a03df7fcbfd38a3a989e8841aeedb0e050 100644 --- a/method_inputs/a1/BOT_X10_20K/receipts/export_51933433.json +++ b/method_inputs/a1/BOT_X10_20K/receipts/export_51933433.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_BOT_X10_20K", "host": "cn604-14", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/receipts/identity_scan_51933433.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/receipts/identity_scan_51933433.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "92d9f52190f32a81bf95586ee5a60e11b20a898fdd260e45dba5b0fb119c9a88" + "sha256": "6d238f2385e29f6540a3106b08ed120405b0240e9b3badbd5405cfd00178e5b6" }, "job": "51933433", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/receipts/open_audit_51933433.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/receipts/open_audit_51933433.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000000/n32", "files": { "multihetsep.txt": "0a9f1f378d6778bc804f53a4be4254f51cb039b86ea0a397b723a994db310aba", "phlash_contig.npz": "ad93c31866ae1ae9607edacf7f545f518e479c01bae4df27c19a706ec1542569", @@ -54,7 +54,7 @@ "view.bcf": "fa472ff2063de525c9dbeb8904899a1790de0f2f7b3037cbf2ff62f65c4f4d12", "view.bcf.csi": "beb928c5913726216c4d4de34d23398b12ce977e803e182f553808cad2166666" }, - "meta_sha256": "4218a1731d92448f8649ffec46db3bf7220e54db1f35a99971b6846ac05ffb3f", + "meta_sha256": "2925594af264e278c8d6922c5a4dd955c554457d74861df11df6474e8d015bbd", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000001/n32", "files": { "multihetsep.txt": "c869d03c0c64bc862f497c16a872146296dd7ba1577550ff7a7229d434a835af", "phlash_contig.npz": "6b0ff70bbe479d154238c5339ac8531d21a4c9d82c445014a08d56241d38929b", @@ -93,7 +93,7 @@ "view.bcf": "eee0be91315ac0b1d9b6d689a67099869f4d146b97e3bc7d9b9b5124279070c4", "view.bcf.csi": "9c05d1bb27a5bad4ffb99c789050b87c68166d4533bcc5dd5aa5c5a376e7aac4" }, - "meta_sha256": "dc9cc2f14b2bf7ab27ab74215a1083a7a7c9f4e92e54a66e010f6fd99539719b", + "meta_sha256": "425829190218cff8c68cad3c4882bb6b915cbbd59b39e35d88e4f33386cbac44", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000002/n32", "files": { "multihetsep.txt": "aab048a016dc6640ee1ec187f35edd7b8b3d8283f0370503fa568fdb1c1190cc", "phlash_contig.npz": "945322de1a4c42aa7980caefde9fe60433b25f902db3f33b45d49abc26e7fd55", @@ -132,7 +132,7 @@ "view.bcf": "333e58de9e2bdc3179c0288a836f72e344a538073a7024a0a9e691c32b7b5bc2", "view.bcf.csi": "03c8ec0f8d5aa6d0818f873690cdd9a6aff8c06dfe45a83b7474c1a1702b68c8" }, - "meta_sha256": "7da29144f4af2353866b54f8b9e7352b2b3831f6dd9f07627250a99a0af981c9", + "meta_sha256": "3f3f4e8b5cd846603b4389a8899e522e21c8712d3f2f94bde4703fa3200602b0", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000003/n32", "files": { "multihetsep.txt": "c87b35706662a3f60205710cb728ca502ac5d0df3d17dde7491d7f6c50c6f60a", "phlash_contig.npz": "5cf06460979051735777e43d64567ecf7404878f2c8c6e4708a3e575aa486950", @@ -171,7 +171,7 @@ "view.bcf": "286b4f860805ca80ce9835d665be2ff72995733b15e6938a3e14dfcf6a04880d", "view.bcf.csi": "079e1cde6dd98a3373248f1bb9f4c0649f1be8a39c733b7c48b2fc6455e6ea03" }, - "meta_sha256": "03b924611f526ff5018d9fd5e0d815c6d41c9e6dfd4c4306c781879f59d02526", + "meta_sha256": "ce5642a4c4f4fee7be64c76591e88b5e652453ca61404580ac75a24a2b6755ae", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000004/n32", "files": { "multihetsep.txt": "d7418609508e4215964fe270b8eceaa1fbcc9acba8c53428ceca605564a4dc35", "phlash_contig.npz": "50ef19132a7a7c060a70994f4c873368e4fb810ecd48c3def67eb895fec77c66", @@ -210,7 +210,7 @@ "view.bcf": "8ef94150f12c71524fe807024323b6655e8757982119259a6fbc6908055aeb27", "view.bcf.csi": "3fa1bba665c8e73d02ec148cd1b4ece1ed7a2a5e3e007fa14fcf1010c5c58430" }, - "meta_sha256": "068a078cae688d36b78cf89318cf377a6b13ac1f5ca38f4d1c42e705ca4a5d6d", + "meta_sha256": "dd7fc3e3877935d585a65fcb184e0defd5c8e1d97d3bc1fdb6b49d81ffc530b7", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000005/n32", "files": { "multihetsep.txt": "db8237e622bfc529bf960eda5cd5fc56976531d76d0735ac38376f437d18316a", "phlash_contig.npz": "0ae5906fc2d51f586f511b3f9041a6d058f5ffad1c5c02d744990900e9251d72", @@ -249,7 +249,7 @@ "view.bcf": "4082571624f96746a2901149d5d8ffdc9986eea30a04bc2f82f9983a9c0d6e15", "view.bcf.csi": "622dd470c86461759e47369790d14d511587f982ba61f0ba97cc0d4ace67f522" }, - "meta_sha256": "66d538aec74da71a8b15f3bbc0d5617aee05fb3347bc5ddbbc49a6b32600cf88", + "meta_sha256": "0b954de96e89edeebb1c62a53165ffd4dc6d6ec5151323ad5e7b8364a260a92f", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000006/n32", "files": { "multihetsep.txt": "229003868d9cf6f240d13abe473337eb3f32cbd6418c615a386ed4c8204ab1ec", "phlash_contig.npz": "cd0e8f1f083ca0370c6c81b97327ba912c1aca914e2ef6a4494fdd8c533e8955", @@ -288,7 +288,7 @@ "view.bcf": "56ad35f69389ff6acaff99b0111404cfc541c9153e884a54438b310aaf7bdc18", "view.bcf.csi": "00ec393e34e3b570355998f4be73337242381c3fb5b0126c1527e3ca70460fc7" }, - "meta_sha256": "64f39a414a97a90ac5700947c1f2ce5338d4c8f7802947453c90659ed5e880df", + "meta_sha256": "d9080cd5652aa90554e8afcece388e22a01356a1b42c6ba675150dcdf7c20487", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "76853999c5d7178c9fc2d59d4b681a1404c70f24513cab9c9ced9b990a8964e2", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/n32", "files": { "multihetsep.txt": "4b2bd6d633a7c5b2b5a81c61004dbb8ac820c3afbad89a94877d23af190a1320", "phlash_contig.npz": "b589edbf54c7584c8197faa60144aac4201de850b156e6f654cb8c6198313ded", @@ -327,7 +327,7 @@ "view.bcf": "db3b9e29245475a42678f80740243ea9222c83ce0bbf0487bdb51953c6d9c763", "view.bcf.csi": "9b3b56d2e4020429a70e8bc80cb6fe0d4c3a1e8c988da259eeeb18f5bbf01995" }, - "meta_sha256": "dfcf4aa6291faaf30adff5acb5f627be1623cf36fcd7317a0d2c426ad88a7081", + "meta_sha256": "96b9a4c11d9db434fe03986254900a166ebfefebb3bfc2afc5afc9070bf1e659", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/BOT_X10_20K/receipts/identity_scan_51933433.json b/method_inputs/a1/BOT_X10_20K/receipts/identity_scan_51933433.json index 3db963dbfd1823e9e6a77aa51b693d3325b97830..70dbc2c0c349e5ba46bd3ea832af0d05302f288e 100644 --- a/method_inputs/a1/BOT_X10_20K/receipts/identity_scan_51933433.json +++ b/method_inputs/a1/BOT_X10_20K/receipts/identity_scan_51933433.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "d9806762328a74204e05234d02fa8fc6222e8fc7b86654c130d4c8aaf2d7646a" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T11:03:48Z" diff --git a/method_inputs/a1/BOT_X10_20K/receipts/open_audit_51933433.json b/method_inputs/a1/BOT_X10_20K/receipts/open_audit_51933433.json index c45d6dcec24006ff256aabe7b1db00fff6473cff..ffc0aa2ca0a3fdff9e5ac0d44d27ccf64c56cc5e 100644 --- a/method_inputs/a1/BOT_X10_20K/receipts/open_audit_51933433.json +++ b/method_inputs/a1/BOT_X10_20K/receipts/open_audit_51933433.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/receipts/identity_scan_51933433.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/receipts/identity_scan_51933433.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_20K/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_20K/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "r", - 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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/n32/sfs_unfolded.npy" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/n32/sfs_unfolded.npy" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/n32/phlash_contig.npz" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/n32/phlash_contig.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/n32/sfs_unfolded.npy" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/n32/sfs_unfolded.npy" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/n32/view.bcf" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/n32/view.bcf" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/v0_n32.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/r00000007/v0_n32.json" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/receipts/export_51933433.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_20K/receipts/export_51933433.json" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/events.log" + "path": "$WORK/bench_h2h_20260915/events.log" } ], "purposes": [ diff --git a/method_inputs/a1/BOT_X10_5K/r00000000/n32/meta.json b/method_inputs/a1/BOT_X10_5K/r00000000/n32/meta.json index bf2b3f3fc074ea9bfdf592c48a3f8db55fdd4443..a7ac983838bfde2ab17576792032aef32f7ed918 100644 --- a/method_inputs/a1/BOT_X10_5K/r00000000/n32/meta.json +++ b/method_inputs/a1/BOT_X10_5K/r00000000/n32/meta.json @@ -2,7 +2,7 @@ "S": 52687, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16", "canonical_id": "4cc8cc2edcdd89f42af05cd74b2c4b95bb50269672d9e8f8eae7e30f35a93530:00000000", @@ -50,7 +50,7 @@ "view.bcf": "67c52b3b5a1271d098fa5d22fc557b7743c8b61f5219f7d58287f7dc29283d2c", "view.bcf.csi": "3744bbbc4f54491a2cab3596c9a4ba3b8aecf48d694b179c2de209407375e8f7" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "148dc9db233c3e70a24b95ad421143452f20f2fcc8a7204323955e4ec0ee3bc7", "ladder_columns": [ 39, diff --git a/method_inputs/a1/BOT_X10_5K/r00000001/n32/meta.json b/method_inputs/a1/BOT_X10_5K/r00000001/n32/meta.json index bbe0a0d62b99c743b91643d9d3d40a2709d93b4c..e9aa92bfa5474e37db7db79fb2e34ba9329286cf 100644 --- a/method_inputs/a1/BOT_X10_5K/r00000001/n32/meta.json +++ b/method_inputs/a1/BOT_X10_5K/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 50428, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16", "canonical_id": "4cc8cc2edcdd89f42af05cd74b2c4b95bb50269672d9e8f8eae7e30f35a93530:00000001", @@ -50,7 +50,7 @@ "view.bcf": "176f1583d0d132beb7754e14e214aa5c1f1ffdc3cee701b078687264e3c6920f", "view.bcf.csi": "7d51358792806a08ad12657ea6ed7bc0806c00529daedda2199fa121da07045a" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "148dc9db233c3e70a24b95ad421143452f20f2fcc8a7204323955e4ec0ee3bc7", "ladder_columns": [ 16, diff --git a/method_inputs/a1/BOT_X10_5K/r00000002/n32/meta.json b/method_inputs/a1/BOT_X10_5K/r00000002/n32/meta.json index c54086d3f6c93c0af9106032d862ad00ba83a533..4820c9b3f65cdfca42234c2eb91af3a185b188b0 100644 --- a/method_inputs/a1/BOT_X10_5K/r00000002/n32/meta.json +++ b/method_inputs/a1/BOT_X10_5K/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 53304, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16", "canonical_id": "4cc8cc2edcdd89f42af05cd74b2c4b95bb50269672d9e8f8eae7e30f35a93530:00000002", @@ -50,7 +50,7 @@ "view.bcf": "47dd89be9ff6ea2011ffec8eb239b7b46b2f0a508ea405eefd466357f2ab8543", "view.bcf.csi": "8b48bb1eb9745ac1dc343ff8e01a7a94649385b30ce5966c64e1b5d063a335c0" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "148dc9db233c3e70a24b95ad421143452f20f2fcc8a7204323955e4ec0ee3bc7", "ladder_columns": [ 23, diff --git a/method_inputs/a1/BOT_X10_5K/r00000003/n32/meta.json b/method_inputs/a1/BOT_X10_5K/r00000003/n32/meta.json index 59867979e862bc7ef8d8eebe08fb9fa0552d7428..cb1ce528e5336710f76f1cb29ef13142595228b5 100644 --- a/method_inputs/a1/BOT_X10_5K/r00000003/n32/meta.json +++ b/method_inputs/a1/BOT_X10_5K/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 50488, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16", "canonical_id": "4cc8cc2edcdd89f42af05cd74b2c4b95bb50269672d9e8f8eae7e30f35a93530:00000003", @@ -50,7 +50,7 @@ "view.bcf": "8c0273e1539a8274ccab9ce65fd58bc254827f52ce996f4e608cb528968df1e1", "view.bcf.csi": "f76ce3346c9c95de5cfa15e038926d4f5046f8e1c03726de4e1a5420e8b95602" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "148dc9db233c3e70a24b95ad421143452f20f2fcc8a7204323955e4ec0ee3bc7", "ladder_columns": [ 35, diff --git a/method_inputs/a1/BOT_X10_5K/r00000004/n32/meta.json b/method_inputs/a1/BOT_X10_5K/r00000004/n32/meta.json index 0a671dd3d26787775ac73a77f09c4d1752e5d0e6..b2ba7f9a4521a34104d195f36308db6e9558ed0a 100644 --- a/method_inputs/a1/BOT_X10_5K/r00000004/n32/meta.json +++ b/method_inputs/a1/BOT_X10_5K/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 52084, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16", "canonical_id": "4cc8cc2edcdd89f42af05cd74b2c4b95bb50269672d9e8f8eae7e30f35a93530:00000004", @@ -50,7 +50,7 @@ "view.bcf": "2f3d04405704cfad06073609f7b3ced827264bd7a8072d580691e1ff0ba72b59", "view.bcf.csi": "180bdccf01b6bcb3bf8d251f4c907ae4b219e9bee91ef604ab7e45ef4775fa1c" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "dce876d95a65492d711628bab6424e3f0788face870fccaee1a87cb9c17235e1", "ladder_columns": [ 22, diff --git a/method_inputs/a1/BOT_X10_5K/r00000005/n32/meta.json b/method_inputs/a1/BOT_X10_5K/r00000005/n32/meta.json index 87689f3087477d36cb795f3a43e13fe4102928e7..3f0be0da2adda344ab31774efa121501db9933c6 100644 --- a/method_inputs/a1/BOT_X10_5K/r00000005/n32/meta.json +++ b/method_inputs/a1/BOT_X10_5K/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 52207, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16", "canonical_id": "4cc8cc2edcdd89f42af05cd74b2c4b95bb50269672d9e8f8eae7e30f35a93530:00000005", @@ -50,7 +50,7 @@ "view.bcf": "cf8901a945094261b104403791a4ae2f1b6acdc26827227f705d549a08366f86", "view.bcf.csi": "e7044e164e08f4b1a0f5de58972ef139953bcfc9c91f728faab03946471a0b49" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "dce876d95a65492d711628bab6424e3f0788face870fccaee1a87cb9c17235e1", "ladder_columns": [ 8, diff --git a/method_inputs/a1/BOT_X10_5K/r00000006/n32/meta.json b/method_inputs/a1/BOT_X10_5K/r00000006/n32/meta.json index ed4ea9a5cbd1f2f2a2d964737556338907450952..eeda0d2a11bba4728b10ab446e4d7bc4ae7c8aee 100644 --- a/method_inputs/a1/BOT_X10_5K/r00000006/n32/meta.json +++ b/method_inputs/a1/BOT_X10_5K/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 52219, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16", "canonical_id": "4cc8cc2edcdd89f42af05cd74b2c4b95bb50269672d9e8f8eae7e30f35a93530:00000006", @@ -50,7 +50,7 @@ "view.bcf": "e877eb53e5b0de7eb5b674af6ab521f2c02e5b0283ffe789c9040449d796fa99", "view.bcf.csi": "0bd6d59d8b3a5d4fa2ab94a0f204f3b1a4f4627592137fe7cfabaebe13a523aa" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "dce876d95a65492d711628bab6424e3f0788face870fccaee1a87cb9c17235e1", "ladder_columns": [ 60, diff --git a/method_inputs/a1/BOT_X10_5K/r00000007/n32/meta.json b/method_inputs/a1/BOT_X10_5K/r00000007/n32/meta.json index 4644723a65738770edd9a0a8f5b9b1b2d817dafd..b8341faa764a04a46e8d5c5d67ebc0a27fe2673f 100644 --- a/method_inputs/a1/BOT_X10_5K/r00000007/n32/meta.json +++ b/method_inputs/a1/BOT_X10_5K/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 51934, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16", "canonical_id": "4cc8cc2edcdd89f42af05cd74b2c4b95bb50269672d9e8f8eae7e30f35a93530:00000007", @@ -50,7 +50,7 @@ "view.bcf": "5c9554fa2699566f2fcb8cbd2c76239d10dcb658d6ca3b87a7121108803ad3d2", "view.bcf.csi": "885ae3ae65a79896261f9f74c49bba3701d0185d19d0df3d3c303acd54024cb6" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "dce876d95a65492d711628bab6424e3f0788face870fccaee1a87cb9c17235e1", "ladder_columns": [ 31, diff --git a/method_inputs/a1/BOT_X10_5K/receipts/export_51933159.json b/method_inputs/a1/BOT_X10_5K/receipts/export_51933159.json index 4ce87ced2b38966b77090bb5d6c61ce01559792d..b9114a5fa5648b4da76f930b54440d959cc3963a 100644 --- a/method_inputs/a1/BOT_X10_5K/receipts/export_51933159.json +++ b/method_inputs/a1/BOT_X10_5K/receipts/export_51933159.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_BOT_X10_5K", "host": "cn113-35-l", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/receipts/identity_scan_51933159.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/receipts/identity_scan_51933159.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "effc84f9ca3514f222b2ad701e4742b9a43aa21dc4c6362bfae59a72a06fc681" + "sha256": "221e5a092355fbe65b16ab217fcede3046c488bea50e08c166292bbb3696a9b1" }, "job": "51933159", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/receipts/open_audit_51933159.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/receipts/open_audit_51933159.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000000/n32", "files": { "multihetsep.txt": "bb3463d74b0815ba55b5d67a329a06b6f6d7a60cd835fccff93de9d89213a624", "phlash_contig.npz": "aa89b0013e897ce272fbaf2c64890c7a2915cca66f623a56012b048216bc37a4", @@ -54,7 +54,7 @@ "view.bcf": "67c52b3b5a1271d098fa5d22fc557b7743c8b61f5219f7d58287f7dc29283d2c", "view.bcf.csi": "3744bbbc4f54491a2cab3596c9a4ba3b8aecf48d694b179c2de209407375e8f7" }, - "meta_sha256": "419a0f95404fc5fba9a30c2bef23c049af42931cc483b2d263361a3b8d794a7f", + "meta_sha256": "93a328e1c0ddc569f9c234cc560024efb31abd4b5d300866aba8ec5d67ab0bcb", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000001/n32", "files": { "multihetsep.txt": "19cf872c59ce915e2ece4387ebd8fb1f9db70b7f4a981f30bb2886f8a83dd4d5", "phlash_contig.npz": "43d177da77b450ac5e1bfba3ad40d685a55f126f2ca22c0003ae944278a1712a", @@ -93,7 +93,7 @@ "view.bcf": "176f1583d0d132beb7754e14e214aa5c1f1ffdc3cee701b078687264e3c6920f", "view.bcf.csi": "7d51358792806a08ad12657ea6ed7bc0806c00529daedda2199fa121da07045a" }, - "meta_sha256": "e29742663bdd5d2598226ab3b098aa02b7a79438aaa402d6f383e9d70428c65d", + "meta_sha256": "7495c265e57b0a45b4b227b7dda30ef55caf3b5ce4c174f6b91381f84e36ae5e", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000002/n32", "files": { "multihetsep.txt": "7e1c7de66200161f37b0b88a14999253d8257ea44a1866396b53b3c9d0956087", "phlash_contig.npz": "30376b5c7fed6a2a4945dd059dddd5d3eee4badc65e616a6c002a639b938c931", @@ -132,7 +132,7 @@ "view.bcf": "47dd89be9ff6ea2011ffec8eb239b7b46b2f0a508ea405eefd466357f2ab8543", "view.bcf.csi": "8b48bb1eb9745ac1dc343ff8e01a7a94649385b30ce5966c64e1b5d063a335c0" }, - "meta_sha256": "54dd2cdd44954075538bef2ea305cda2979c0f9725d0ecf018c0dcb0423d920c", + "meta_sha256": "b5357bc11bc6454cebb7c29cfcf2c77321ed8315973c429199850372cbdf512d", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000003/n32", "files": { "multihetsep.txt": "595b6b42c990d1875396379cdfb1a57f14175a14ea07c071bd18de1a30c242c4", "phlash_contig.npz": "cb7f2323c370bf7adf5e13a2261129a73e2989780a8a1dd31fb608c2f1b20ba6", @@ -171,7 +171,7 @@ "view.bcf": "8c0273e1539a8274ccab9ce65fd58bc254827f52ce996f4e608cb528968df1e1", "view.bcf.csi": "f76ce3346c9c95de5cfa15e038926d4f5046f8e1c03726de4e1a5420e8b95602" }, - "meta_sha256": "5e5067dcc8cce8abc73745a3ef3de76dffd39c37cdda0bd3c8076e16cf7310f9", + "meta_sha256": "6950f259b33956f5dc3de161fbf0952e52dcd303652e26f8b1a387907b415f9a", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000004/n32", "files": { "multihetsep.txt": "7b63aae6b1e3b6ab3cea01c74dee308c011ef16dd64d65c8b866274e1556b41b", "phlash_contig.npz": "a24fc1a16509cfac3711030953817ab5140307b195fff83abd69f12fc6dd29bb", @@ -210,7 +210,7 @@ "view.bcf": "2f3d04405704cfad06073609f7b3ced827264bd7a8072d580691e1ff0ba72b59", "view.bcf.csi": "180bdccf01b6bcb3bf8d251f4c907ae4b219e9bee91ef604ab7e45ef4775fa1c" }, - "meta_sha256": "adcf118caa9d240f604d0adbc3a98d00b332883adcb3382757c4cb332c241091", + "meta_sha256": "b89b1fd69521b35a91a6524f52309328f78fbf3d827fd0fea8c94ca8be273083", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000005/n32", "files": { "multihetsep.txt": "bc3303606d90aa2e741e15e508edaf82f11f52edb79fb933cbb4c9cffa2fe67b", "phlash_contig.npz": "fae8a81940828b21b91d1b226aa663380e4aa7af657994d3b3237e1aa2244efa", @@ -249,7 +249,7 @@ "view.bcf": "cf8901a945094261b104403791a4ae2f1b6acdc26827227f705d549a08366f86", "view.bcf.csi": "e7044e164e08f4b1a0f5de58972ef139953bcfc9c91f728faab03946471a0b49" }, - "meta_sha256": "d7c37fe73cac2ec040d025756e8baa6c535bd0b4bb0997c287909f0a9ffbc120", + "meta_sha256": "a500a4ff3d6b1ca946e6bbc97a4346deb75b377dedf7fb24a778e45ac221035b", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000006/n32", "files": { "multihetsep.txt": "acd98d1b7a0ec26fd5588a130fc65e5b5ed1b3932d8e4e41d882ab9960b5635e", "phlash_contig.npz": "b2e613879d54cfb715fdee2b8a1cc2d2e1ceba8d6d10a56e46f4ef49cc709ee0", @@ -288,7 +288,7 @@ "view.bcf": "e877eb53e5b0de7eb5b674af6ab521f2c02e5b0283ffe789c9040449d796fa99", "view.bcf.csi": "0bd6d59d8b3a5d4fa2ab94a0f204f3b1a4f4627592137fe7cfabaebe13a523aa" }, - "meta_sha256": "bbdb464b594241decf2d4de254c44df8399b5d416f26bdc32c97d41451932135", + "meta_sha256": "7873edb9bc6349340a1713d51d66ddb935a4e0d42599e47c91e138c6781dede4", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c930f573810e63647eda049a2730cec4945083414734e39a239771d64c757c16", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_BOT_X10_5K/r00000007/n32", "files": { "multihetsep.txt": "afe023c22006e91dc772c546781cb2d242b84ade1dcc01a3ff0a1231575a06b0", "phlash_contig.npz": "fec63fdca9a472212c6ec347edd7d673cff404e05cb9eaaa4a5022b9bad26760", @@ -327,7 +327,7 @@ "view.bcf": "5c9554fa2699566f2fcb8cbd2c76239d10dcb658d6ca3b87a7121108803ad3d2", "view.bcf.csi": "885ae3ae65a79896261f9f74c49bba3701d0185d19d0df3d3c303acd54024cb6" }, - "meta_sha256": "5104fc4c6c22e8d4b6a7fe7a9f809c5da874eebf76b92436afa52fe8d99d8f1c", + "meta_sha256": "69d61865336d42cb1fe05ede3a636ed17eef36d6c87c0de25bb69542728f37f1", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/BOT_X10_5K/receipts/identity_scan_51933159.json b/method_inputs/a1/BOT_X10_5K/receipts/identity_scan_51933159.json index 6924aa4557d9529611fb1df1bdf0c515f8dafdc8..033b1d8f474d2b9d5c3db0bd4691d85a768e58a3 100644 --- a/method_inputs/a1/BOT_X10_5K/receipts/identity_scan_51933159.json +++ b/method_inputs/a1/BOT_X10_5K/receipts/identity_scan_51933159.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "4cc8cc2edcdd89f42af05cd74b2c4b95bb50269672d9e8f8eae7e30f35a93530" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T10:58:31Z" diff --git a/method_inputs/a1/BOT_X10_5K/receipts/open_audit_51933159.json b/method_inputs/a1/BOT_X10_5K/receipts/open_audit_51933159.json index b62e70483e199b8a34557aa6a26ae8b12699c04f..df5a8f8336efadebde101d9b4073cc4452db1524 100644 --- a/method_inputs/a1/BOT_X10_5K/receipts/open_audit_51933159.json +++ b/method_inputs/a1/BOT_X10_5K/receipts/open_audit_51933159.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_BOT_X10_5K/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - 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"cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0", "canonical_id": "314dd3ad7fc4d53a08b66bb803ad2b16cd6b0cbe910b4df6fc964bf96ae63819:00000000", @@ -50,7 +50,7 @@ "view.bcf": "60adb1c424a6c22345ad55cf3d91dc57166e73c491bea4bb4f6b44ddbbc6d4cc", "view.bcf.csi": "b30146add2d98632cfabab924d7c00dbfde7e309841a878f0f83cc2e8bcb64c5" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "349839c107402e29ceacf4a9f72184fa4cd8c9cf8c108b095d80fbaef3de0856", "ladder_columns": [ 39, diff --git a/method_inputs/a1/CONST_2K/r00000001/n32/meta.json b/method_inputs/a1/CONST_2K/r00000001/n32/meta.json index 9f4bc5262df40da942f90f0a45caa6cde6b2b876..0390887a69ade2a71c7281a55ded126e017e33cd 100644 --- a/method_inputs/a1/CONST_2K/r00000001/n32/meta.json +++ b/method_inputs/a1/CONST_2K/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 14028, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0", "canonical_id": "314dd3ad7fc4d53a08b66bb803ad2b16cd6b0cbe910b4df6fc964bf96ae63819:00000001", @@ -50,7 +50,7 @@ "view.bcf": "9f6b707f1f79c4f3b040fe7657ef1d67c5043f3117be5cd5e9a41de2cdef4af3", "view.bcf.csi": "17f066ec146a99309e4dd31375e0e6d3af02798c1aae6979c7a005aa2958ee0c" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "349839c107402e29ceacf4a9f72184fa4cd8c9cf8c108b095d80fbaef3de0856", "ladder_columns": [ 16, diff --git a/method_inputs/a1/CONST_2K/r00000002/n32/meta.json b/method_inputs/a1/CONST_2K/r00000002/n32/meta.json index e0c21622259bf3e025e1a5d5e25d101d212eebd5..e91e524dcac214d5f22126ad336b0640f18866a9 100644 --- a/method_inputs/a1/CONST_2K/r00000002/n32/meta.json +++ b/method_inputs/a1/CONST_2K/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 14535, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0", "canonical_id": "314dd3ad7fc4d53a08b66bb803ad2b16cd6b0cbe910b4df6fc964bf96ae63819:00000002", @@ -50,7 +50,7 @@ "view.bcf": "7b6413ee7e8ca4c8ad7dce4819560f7340624f7e19e2a60b998e1feb3a3bc80a", "view.bcf.csi": "05a6a7ad2698958098b89045d426ce9c7d1abab0ffb1cbd34b3da01ec7694224" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "349839c107402e29ceacf4a9f72184fa4cd8c9cf8c108b095d80fbaef3de0856", "ladder_columns": [ 23, diff --git a/method_inputs/a1/CONST_2K/r00000003/n32/meta.json b/method_inputs/a1/CONST_2K/r00000003/n32/meta.json index 56ad0ceeebffeb5bb45034f125a8fb31e00e40b8..7cd044c0f38b5329f58c38cc698ca38c08771bc6 100644 --- a/method_inputs/a1/CONST_2K/r00000003/n32/meta.json +++ b/method_inputs/a1/CONST_2K/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 14239, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0", "canonical_id": "314dd3ad7fc4d53a08b66bb803ad2b16cd6b0cbe910b4df6fc964bf96ae63819:00000003", @@ -50,7 +50,7 @@ "view.bcf": "d7fc6ebbf525b655dbd430ba2ddccf32fe3d170e4accb4bf73a9a6c6ef4e9fb3", "view.bcf.csi": "a2dae87427d1ad02817b9cdda403356c72689306272aeca3386f91206e8ae7fd" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "349839c107402e29ceacf4a9f72184fa4cd8c9cf8c108b095d80fbaef3de0856", "ladder_columns": [ 35, diff --git a/method_inputs/a1/CONST_2K/r00000004/n32/meta.json b/method_inputs/a1/CONST_2K/r00000004/n32/meta.json index a629a06b1dca2cf7dc6f224cc842f5bb85acc956..e133d8e323a410bcab2bb302b38385dbcbb47b03 100644 --- a/method_inputs/a1/CONST_2K/r00000004/n32/meta.json +++ b/method_inputs/a1/CONST_2K/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 13969, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0", "canonical_id": "314dd3ad7fc4d53a08b66bb803ad2b16cd6b0cbe910b4df6fc964bf96ae63819:00000004", @@ -50,7 +50,7 @@ "view.bcf": "4a3b575e77139c4c4ea47f8338cd5d04281e9c66407917d392b98b96afc4c9bc", "view.bcf.csi": "7995174affd7ef72a142e57f9bac401f55a867746d7cd713879df9c5d3b64b6a" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "80fdae05a5cc7b52f7c53fe978cd68a93b04b5c8e1502ecd64defd351b20e14f", "ladder_columns": [ 22, diff --git a/method_inputs/a1/CONST_2K/r00000005/n32/meta.json b/method_inputs/a1/CONST_2K/r00000005/n32/meta.json index ef0f3ea517286477f4c3db21ec3eeca026c216ed..09bab953bed54a8aecdea99e1fc7cc6934053dab 100644 --- a/method_inputs/a1/CONST_2K/r00000005/n32/meta.json +++ b/method_inputs/a1/CONST_2K/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 14305, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0", "canonical_id": "314dd3ad7fc4d53a08b66bb803ad2b16cd6b0cbe910b4df6fc964bf96ae63819:00000005", @@ -50,7 +50,7 @@ "view.bcf": "5a46059b1a12c7c3e7eaa0f64a343fbf16024c8afb8439a678bd8c17dab0d6c7", "view.bcf.csi": "2118f830335f4afdf093959f6baa7ccf7adbedbe7adb0cffbb1a671770c3ee27" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "80fdae05a5cc7b52f7c53fe978cd68a93b04b5c8e1502ecd64defd351b20e14f", "ladder_columns": [ 8, diff --git a/method_inputs/a1/CONST_2K/r00000006/n32/meta.json b/method_inputs/a1/CONST_2K/r00000006/n32/meta.json index 5b769d970f843cbff0ab46c49be8fd38f35e3bfd..fc9fb0d950018569d47ca4548997e7bed4279500 100644 --- a/method_inputs/a1/CONST_2K/r00000006/n32/meta.json +++ b/method_inputs/a1/CONST_2K/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 14160, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0", "canonical_id": "314dd3ad7fc4d53a08b66bb803ad2b16cd6b0cbe910b4df6fc964bf96ae63819:00000006", @@ -50,7 +50,7 @@ "view.bcf": "5b221faf5cdbe929ce5f71e85acaad258c9152ca69f417fa5a3c35b20792601c", "view.bcf.csi": "f7084597661e0dad0aeac230a4cbb16fb174723be023997ff7edaa7ce5f8cbd6" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "80fdae05a5cc7b52f7c53fe978cd68a93b04b5c8e1502ecd64defd351b20e14f", "ladder_columns": [ 60, diff --git a/method_inputs/a1/CONST_2K/r00000007/n32/meta.json b/method_inputs/a1/CONST_2K/r00000007/n32/meta.json index 039863f2363a5c6e306fa66cd2ce24709e52e30b..9ce9deb18aafd617147112721a4f22fb0fface8a 100644 --- a/method_inputs/a1/CONST_2K/r00000007/n32/meta.json +++ b/method_inputs/a1/CONST_2K/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 14428, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0", "canonical_id": "314dd3ad7fc4d53a08b66bb803ad2b16cd6b0cbe910b4df6fc964bf96ae63819:00000007", @@ -50,7 +50,7 @@ "view.bcf": "b664104c4f431598b9fb019fbc2d70ec6adc725cefda8e30d25112d733450825", "view.bcf.csi": "10183558d540f79096a221f4dca8e7f23daaebc73c22e668f4c249eeb37716a0" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "80fdae05a5cc7b52f7c53fe978cd68a93b04b5c8e1502ecd64defd351b20e14f", "ladder_columns": [ 31, diff --git a/method_inputs/a1/CONST_2K/receipts/export_51933476.json b/method_inputs/a1/CONST_2K/receipts/export_51933476.json index b79e4923835be836be089896a336674dc92ca73f..43a7c9d02bf6ddbefc8a1ada4c59b26fed9c9feb 100644 --- a/method_inputs/a1/CONST_2K/receipts/export_51933476.json +++ b/method_inputs/a1/CONST_2K/receipts/export_51933476.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_CONST_2K", "host": "cn604-18", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/receipts/identity_scan_51933476.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/receipts/identity_scan_51933476.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "08138113c69aaca142cf7531436095c3c5f1f1bc0f55cd03516337c672aa0d72" + "sha256": "31ee4062b163e5e14813c91f8f78967d1677875d06818893772624edf09d4f8d" }, "job": "51933476", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/receipts/open_audit_51933476.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/receipts/open_audit_51933476.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/n32", "files": { "multihetsep.txt": "eeb7086cbcf13fcbe598ff10ec8ed3e4975a3aa6da2195374317aaf4e5893de2", "phlash_contig.npz": "877b2f6753fc9892326cbc3a3fc45aed6673d673e480cd83b025f5fe4a734264", @@ -54,7 +54,7 @@ "view.bcf": "60adb1c424a6c22345ad55cf3d91dc57166e73c491bea4bb4f6b44ddbbc6d4cc", "view.bcf.csi": "b30146add2d98632cfabab924d7c00dbfde7e309841a878f0f83cc2e8bcb64c5" }, - "meta_sha256": "cddd48192bb112f36c240f46b5d43aa59f40040629ef5124670ee3637f126b94", + "meta_sha256": "1a39ff2ee83d293e4d2505b4444c54ea24dac086044732bb5f304d9df4920b80", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000001/n32", "files": { "multihetsep.txt": "81d89a034d10e9c95cceeaa70c6a3c94c7e9e81855d50014dda96cfbca6e5a06", "phlash_contig.npz": "6a93d2da97009f30affeb3485619dbe3fa49c85d57066c3b735180042ce531a3", @@ -93,7 +93,7 @@ "view.bcf": "9f6b707f1f79c4f3b040fe7657ef1d67c5043f3117be5cd5e9a41de2cdef4af3", "view.bcf.csi": "17f066ec146a99309e4dd31375e0e6d3af02798c1aae6979c7a005aa2958ee0c" }, - "meta_sha256": "4f10d656b4f88e2a9b3656210084d650078969e3d8267238de3702dba060670b", + "meta_sha256": "5a7bdca4ac95ad0ad59835a8502dae2ee450e6e67ef07d4ca8d2bc38d352db14", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000002/n32", "files": { "multihetsep.txt": "ebaaf311646a6ab01f565ef5147cd9b81bfb35c7c14bc4b424b4d8425d119821", "phlash_contig.npz": "2056379e30be4609752b8c7e4d3fc6950bfc98cbfaf1eda58234f9c10292312b", @@ -132,7 +132,7 @@ "view.bcf": "7b6413ee7e8ca4c8ad7dce4819560f7340624f7e19e2a60b998e1feb3a3bc80a", "view.bcf.csi": "05a6a7ad2698958098b89045d426ce9c7d1abab0ffb1cbd34b3da01ec7694224" }, - "meta_sha256": "bddccc8a4c6c390093fd3a3531bb1fc3148c7c6cba01a25823a103d75cd44ee9", + "meta_sha256": "e77fadcacbcf1bf5449662c05917fab18aac2ccb3eaf5677d77c16ba9a3ac887", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000003/n32", "files": { "multihetsep.txt": "6b990912f0acd6cc69e6d6d081fe6d2a736f79c3522179523e542b616ede589a", "phlash_contig.npz": "20553f13b6ff7f72736e66a7d81052c9fb4e99fcca796dcb623859eecd2f8510", @@ -171,7 +171,7 @@ "view.bcf": "d7fc6ebbf525b655dbd430ba2ddccf32fe3d170e4accb4bf73a9a6c6ef4e9fb3", "view.bcf.csi": "a2dae87427d1ad02817b9cdda403356c72689306272aeca3386f91206e8ae7fd" }, - "meta_sha256": "77039703aaad608c6a39dcc06517e744fed8d0ad6421c9e727de777a28e2e83b", + "meta_sha256": "9f0a7a6fd358e10d87d7e6177c263cd9f85a22e75355013697a310730d1724d2", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000004/n32", "files": { "multihetsep.txt": "e2f90e5c53b8a4ecd3c01a32129325aec4043d9847ee137850bcc9d885635ea9", "phlash_contig.npz": "d6e1c944a6ca80013ea3609acedd92978da464154a5506b32cf94dff079c1f5f", @@ -210,7 +210,7 @@ "view.bcf": "4a3b575e77139c4c4ea47f8338cd5d04281e9c66407917d392b98b96afc4c9bc", "view.bcf.csi": "7995174affd7ef72a142e57f9bac401f55a867746d7cd713879df9c5d3b64b6a" }, - "meta_sha256": "c99afe3f15a6b66a32135b918a0f6c419474275074c1fd552988ed4c254c849c", + "meta_sha256": "fa931809d5d4528c6b9b706d00e99441eaaf6a4d52adc5b203367564c43f99a6", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000005/n32", "files": { "multihetsep.txt": "e9569a8a219924eea340be8eaa89c990f6fa0a9472977b189e0045b0cd51ba1d", "phlash_contig.npz": "11a270ad234fecd299a69affb84cc2c25b88eb9f4a4867da9fbeb474de9bc8b7", @@ -249,7 +249,7 @@ "view.bcf": "5a46059b1a12c7c3e7eaa0f64a343fbf16024c8afb8439a678bd8c17dab0d6c7", "view.bcf.csi": "2118f830335f4afdf093959f6baa7ccf7adbedbe7adb0cffbb1a671770c3ee27" }, - "meta_sha256": "50b35a56c2bf2d676deaddddca7c82eecf956e8bd8916afc5c082b20155e2a9e", + "meta_sha256": "8e8ce207e4fce4e8c8bfa232a59d0c4188bc86a4b3df03a643f00f409805f930", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000006/n32", "files": { "multihetsep.txt": "ce4465a03dbbda21593be8b5922512849eef2f8e391b81e034a78ca401b46976", "phlash_contig.npz": "f391b4f7a8304e39d2947370b8515852f23aa7a0daf046ef9a732a19f9835398", @@ -288,7 +288,7 @@ "view.bcf": "5b221faf5cdbe929ce5f71e85acaad258c9152ca69f417fa5a3c35b20792601c", "view.bcf.csi": "f7084597661e0dad0aeac230a4cbb16fb174723be023997ff7edaa7ce5f8cbd6" }, - "meta_sha256": "fb1dfb29f17b1440e12a4c288ee10149a3269c43e8048d5416e9d3ae40ec07f0", + "meta_sha256": "1e00041140bb5acd61fa9eb9c203e53a628e9c235554eae9a35f2672fc9fa2d7", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6047efdd1a357e0c6a4ed523411091dce64934c9e92d92872b3d04755f8261f0", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000007/n32", "files": { "multihetsep.txt": "923caa968a7eec346298cde8078c9c8f759891d608091e13d123e43f6c639714", "phlash_contig.npz": "10fd9739915bf21cf176ba69214b3441ff05f967e878e24bc172a47d57d0c1e7", @@ -327,7 +327,7 @@ "view.bcf": "b664104c4f431598b9fb019fbc2d70ec6adc725cefda8e30d25112d733450825", "view.bcf.csi": "10183558d540f79096a221f4dca8e7f23daaebc73c22e668f4c249eeb37716a0" }, - "meta_sha256": "c08a72ff6acae38394b9d1cce99b7725b7dba8a0379da6b085a86ead95e3a493", + "meta_sha256": "fbbc1ae4441813a457b3b6c5e96ef1897d38e133a729e2d442a27448da9935f9", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/CONST_2K/receipts/identity_scan_51933476.json b/method_inputs/a1/CONST_2K/receipts/identity_scan_51933476.json index e35b402cc2129b3f52c026aa6c7d5d59e9d8f990..41ed1c01cda54ff3d7b418dc1f2b23c00b723a6c 100644 --- a/method_inputs/a1/CONST_2K/receipts/identity_scan_51933476.json +++ b/method_inputs/a1/CONST_2K/receipts/identity_scan_51933476.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "314dd3ad7fc4d53a08b66bb803ad2b16cd6b0cbe910b4df6fc964bf96ae63819" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T11:04:57Z" diff --git a/method_inputs/a1/CONST_2K/receipts/open_audit_51933476.json b/method_inputs/a1/CONST_2K/receipts/open_audit_51933476.json index eda9b210dcc55b3f34b01f9eac6a1ddcab184456..09a44b4e58d0c896596e4186486b3539fec296eb 100644 --- a/method_inputs/a1/CONST_2K/receipts/open_audit_51933476.json +++ b/method_inputs/a1/CONST_2K/receipts/open_audit_51933476.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/receipts/identity_scan_51933476.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/receipts/identity_scan_51933476.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_2K/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_CONST_2K/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/.n32.tmp-dmzqq8nv/view.vcf" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/.n32.tmp-dmzqq8nv/view.vcf" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/.n32.tmp-dmzqq8nv/phlash_contig.npz" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/.n32.tmp-dmzqq8nv/phlash_contig.npz" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/.n32.tmp-dmzqq8nv/sfs_unfolded.npy" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/.n32.tmp-dmzqq8nv/sfs_unfolded.npy" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/.n32.tmp-dmzqq8nv/multihetsep.txt" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_2K/r00000000/.n32.tmp-dmzqq8nv/multihetsep.txt" }, { "mode": "r", - 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"fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_50K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_50K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "91af24a1f0eace4b2bfa8730e93f35e0ac223cb0e870b7dd4cdaf8fcea39a370", "ladder_columns": [ 35, diff --git a/method_inputs/a1/CONST_50K/r00000004/n32/meta.json b/method_inputs/a1/CONST_50K/r00000004/n32/meta.json index c307ecae4a6e624fa6513763acafcb38c36e4675..3f71b67698b9ad1da39816c0a577371a67a8348a 100644 --- a/method_inputs/a1/CONST_50K/r00000004/n32/meta.json +++ b/method_inputs/a1/CONST_50K/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 356314, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_50K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_CONST_50K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "eaf253887712616958b9e1fa2b079b9abf6ae711920e9dd682f27d3499852717", "canonical_id": "78a7157d44fb3bc5871cdfc34c4bce2499e75a598eb6a395b9f61b95c620f797:00000004", @@ -50,7 +50,7 @@ "view.bcf": "25d5e4791833997a1c1b509b4d8d707d8e790829d39bc946208d9f025224b0b7", "view.bcf.csi": "ba41a4e8565cff43a8e0ca0d03bd5fb0f83b22a89a22abe0326062e6bea996a3" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_50K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_50K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "5a29f32bd017f660230eb4967743c30a3840697dbbf7c5ffe3f34bb1b662c5ca", "ladder_columns": [ 22, diff --git a/method_inputs/a1/CONST_50K/r00000005/n32/meta.json b/method_inputs/a1/CONST_50K/r00000005/n32/meta.json index 37cc413b8c81f072e3a560a80dce93ba2f55a66c..e461c7db8e38b907e5bbbc2a4b534a273d1caef3 100644 --- a/method_inputs/a1/CONST_50K/r00000005/n32/meta.json +++ b/method_inputs/a1/CONST_50K/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 352543, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_50K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_CONST_50K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "eaf253887712616958b9e1fa2b079b9abf6ae711920e9dd682f27d3499852717", "canonical_id": "78a7157d44fb3bc5871cdfc34c4bce2499e75a598eb6a395b9f61b95c620f797:00000005", @@ -50,7 +50,7 @@ "view.bcf": "40eb0acc8af932c84c44640c04cb201eda784b711a07611c410f832ed2baedb4", "view.bcf.csi": "64bcd43adbf612d5fb8ee2bd9d440427f797bbbc3e12b38fc16501155732dba6" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_50K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_50K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "5a29f32bd017f660230eb4967743c30a3840697dbbf7c5ffe3f34bb1b662c5ca", "ladder_columns": [ 8, diff --git a/method_inputs/a1/CONST_50K/r00000006/n32/meta.json b/method_inputs/a1/CONST_50K/r00000006/n32/meta.json index 1f81a618805064a042b1f83c377ae206148b04bc..79f7de99e28337cba358541bcda0b29af21683ad 100644 --- a/method_inputs/a1/CONST_50K/r00000006/n32/meta.json +++ b/method_inputs/a1/CONST_50K/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 354661, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_50K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_CONST_50K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "eaf253887712616958b9e1fa2b079b9abf6ae711920e9dd682f27d3499852717", "canonical_id": "78a7157d44fb3bc5871cdfc34c4bce2499e75a598eb6a395b9f61b95c620f797:00000006", @@ -50,7 +50,7 @@ "view.bcf": "3d37f908910f23582eaea63bebe9562123d883f22acd57955d5be284d04407b1", "view.bcf.csi": "b3b900f840b5b1806950f7336da46fb80f8e5ffac8b0b70399c01c60dbf832f4" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_50K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_50K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "5a29f32bd017f660230eb4967743c30a3840697dbbf7c5ffe3f34bb1b662c5ca", "ladder_columns": [ 60, diff --git a/method_inputs/a1/CONST_50K/r00000007/n32/meta.json b/method_inputs/a1/CONST_50K/r00000007/n32/meta.json index db3da8aacc761bfff32e2dcff9308c1ae9b83b8e..6d733cd7f5dc455527301de4b3767772a04b4276 100644 --- a/method_inputs/a1/CONST_50K/r00000007/n32/meta.json +++ b/method_inputs/a1/CONST_50K/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 348582, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_CONST_50K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_CONST_50K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "eaf253887712616958b9e1fa2b079b9abf6ae711920e9dd682f27d3499852717", "canonical_id": "78a7157d44fb3bc5871cdfc34c4bce2499e75a598eb6a395b9f61b95c620f797:00000007", @@ -50,7 +50,7 @@ "view.bcf": "1502eee7bbfbde3980599a4fc69c2cdf24c62da0c174d6b3c5f10fce8a1a6380", "view.bcf.csi": "d9b9cf2a776df2cf0258b8326662f09604ebc45a88025fd03df74167313633a6" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_50K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_50K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "5a29f32bd017f660230eb4967743c30a3840697dbbf7c5ffe3f34bb1b662c5ca", "ladder_columns": [ 31, diff --git a/method_inputs/a1/CONST_50K/receipts/export_51934599.json b/method_inputs/a1/CONST_50K/receipts/export_51934599.json index a3c73e01de6be0b622fe4f79d809f4ab33d31ffa..9563418baa3df0eae7bbcc11dae6ae18e8f97c3d 100644 --- a/method_inputs/a1/CONST_50K/receipts/export_51934599.json +++ b/method_inputs/a1/CONST_50K/receipts/export_51934599.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_CONST_50K", "host": "cn604-17", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_50K/receipts/identity_scan_51934599.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_50K/receipts/identity_scan_51934599.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "06b4f823dfa76defdeaa458600db5e88ffbfe81f3c3542ea18321323b738039d" + "sha256": "1894362fc12c7560c27326a35c77a5acab18806bb38b8cf2963c02e152f5148b" }, "job": "51934599", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_50K/receipts/open_audit_51934599.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_50K/receipts/open_audit_51934599.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "eaf253887712616958b9e1fa2b079b9abf6ae711920e9dd682f27d3499852717", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_50K/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_50K/r00000000/n32", "files": { "multihetsep.txt": "92c081a40d114c9476c7b79acafd856201e7f3ec0001a507073e4e0b2f3811db", "phlash_contig.npz": "b89dd93836de5c34e07994a19c54f41aeea2114734dc1b318398129bcdd33e10", @@ -54,7 +54,7 @@ "view.bcf": "97b3668724291c1165e4479ba41aa4a21d795030ddee562048173a11668b5432", "view.bcf.csi": "c54de29ac18cbb99b901ded9f19d59b0984e0f2252c5215f8166fb0d9fb10e8b" }, - "meta_sha256": "17284c0a022e46a7afd2be4e9b50fad6a46d97515677d9180fa94d2764242974", + "meta_sha256": "d28b6368b4ea68d660aaba197121dfb12cf543c944b04ce2fc8f1706af512917", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "eaf253887712616958b9e1fa2b079b9abf6ae711920e9dd682f27d3499852717", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_50K/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_50K/r00000001/n32", "files": { "multihetsep.txt": "05f1c8a8d10ac8b9ea438de702ab4edece047cdc3ce6adf0d391356f6eb8ca2d", "phlash_contig.npz": "3e16ee48e1f487838d86c733547241264bd039b1b3598b6401280bd10786794d", @@ -93,7 +93,7 @@ "view.bcf": "f7c09cf811a967d4ad0070500cf63caec3d39442eddf0cce4bd1379044151274", "view.bcf.csi": "ec674bf8a14507027f8c01f84b9973a75683a8f808e29be4f9d6bd46a38051fe" }, - "meta_sha256": "97975f504583a802a9fbe9d0dc4168a14e01366361df96301350a34d5475c862", + "meta_sha256": "6aaeb40ef117fe7c51f83df4bcaf9b92fdeb16c9f65f22b6bf748781082b4d93", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "eaf253887712616958b9e1fa2b079b9abf6ae711920e9dd682f27d3499852717", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_50K/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_50K/r00000002/n32", "files": { "multihetsep.txt": "3f1fec0e84ac3b6cd02434ad4c70db1c44bbfc9bf167b598adc58b8a8dc247d6", "phlash_contig.npz": "c932670c2b802e8381e9ae72c7a8ec83f616ef386d327001943ccf6b13bb326e", @@ -132,7 +132,7 @@ "view.bcf": "ca7dfd0df76dc0be55ecd8728ca5ff95ef9bbe9689943440244f878ac14c86ff", "view.bcf.csi": "9fc0b9e2dbda63de3c60957da72b6343d5fc14b16c41af0832697db47c46d401" }, - "meta_sha256": "16a1f034486304f33291d3387fde1b1afcef953235007625bcf379a21eefab8a", + "meta_sha256": "02a324baa9371b871ded1eab5ab8a018e3e0dda4ed70dbf8f9ac6e0976befad5", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "eaf253887712616958b9e1fa2b079b9abf6ae711920e9dd682f27d3499852717", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_50K/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_50K/r00000003/n32", "files": { "multihetsep.txt": "5c2448949f8d3ebdc0bfa99d51be86aab599d0364a9e2842dbd37ddad7cf498c", "phlash_contig.npz": "47e563f222daf0c6cb2fbb0a800b3957a1f8bb2b2ff331b35ce04789f2de5456", @@ -171,7 +171,7 @@ "view.bcf": "7f757ad8d8f9434eb3e54c17c77b65231692a4a6130598716f7c924f94b0204c", "view.bcf.csi": "f24061dc5e5d24b99d72a49831032d02ba0603fa38a6b85254a2cbd82c3c1f8f" }, - "meta_sha256": "bdecb5349df352fb7c7fad694de9be2f957ac659ff7c244a24e5693b897fb29f", + "meta_sha256": "9a156cd19de0329565c0bf4980ffa802eb78d15b05c9e55d9be01af46be77c71", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "eaf253887712616958b9e1fa2b079b9abf6ae711920e9dd682f27d3499852717", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_50K/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_50K/r00000004/n32", "files": { "multihetsep.txt": "cc5ed36c6398c42febc8596bafdf20d48cc6e68819312410055068872b3bf92b", "phlash_contig.npz": "14593a21a1dd860caaa4e50bd97e81ecffd1ac2d9f4c267a39aa999fb613b4a7", @@ -210,7 +210,7 @@ "view.bcf": "25d5e4791833997a1c1b509b4d8d707d8e790829d39bc946208d9f025224b0b7", "view.bcf.csi": "ba41a4e8565cff43a8e0ca0d03bd5fb0f83b22a89a22abe0326062e6bea996a3" }, - "meta_sha256": "d4afba823912b64f247eed98f25306c80670b40a9c2ce72b75ba3eacf87fb4b8", + "meta_sha256": "eb3ab9f9fe58b8c55e19abdd8b46b5e93fa42002aad17bd53ecaebd0a67593e5", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "eaf253887712616958b9e1fa2b079b9abf6ae711920e9dd682f27d3499852717", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_50K/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_50K/r00000005/n32", "files": { "multihetsep.txt": "d131d7fa7092688da44448cbb1fcd0d84e3b64abee97fcf930ff133122ab673f", "phlash_contig.npz": "d61a9b74a3dee8522e47650c4e59745f8fcaa97d80450d9a9167166b24b40eb8", @@ -249,7 +249,7 @@ "view.bcf": "40eb0acc8af932c84c44640c04cb201eda784b711a07611c410f832ed2baedb4", "view.bcf.csi": "64bcd43adbf612d5fb8ee2bd9d440427f797bbbc3e12b38fc16501155732dba6" }, - "meta_sha256": "48baec38e2c7e8b2fb6fcded749319e0e515e1a8c607b6847ad7a21919d6dfac", + "meta_sha256": "f1f5d63bec813baee9bed1f46ca9b8326ac3486d1b46c68a0e6d771b602fece3", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "eaf253887712616958b9e1fa2b079b9abf6ae711920e9dd682f27d3499852717", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_50K/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_50K/r00000006/n32", "files": { "multihetsep.txt": "3f309f4f2df7432e5892b7294fc25981d8205fb28b34fe4fd4421084889e7ee9", "phlash_contig.npz": "2985d5705f6a3521afdcc34d8936f74e89089a981e070985ef5e4501783da905", @@ -288,7 +288,7 @@ "view.bcf": "3d37f908910f23582eaea63bebe9562123d883f22acd57955d5be284d04407b1", "view.bcf.csi": "b3b900f840b5b1806950f7336da46fb80f8e5ffac8b0b70399c01c60dbf832f4" }, - "meta_sha256": "2d31d4208856fa44ee6ca6348ec7751d5cfcc3798875fb8762875d5434b32ebc", + "meta_sha256": "473b742580bc01822fb3723ffbc78e9fe7dcb56e1a2939a24496365b71b8d1c7", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "eaf253887712616958b9e1fa2b079b9abf6ae711920e9dd682f27d3499852717", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_50K/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_50K/r00000007/n32", "files": { "multihetsep.txt": "e3d1883370b14df4d05e67a984d8e75e48b67c65177759261fd26032ca329405", "phlash_contig.npz": "c118036e404a7e2fd09cd74472a16201f5127f763c65ffcabf26ba18315b401f", @@ -327,7 +327,7 @@ "view.bcf": "1502eee7bbfbde3980599a4fc69c2cdf24c62da0c174d6b3c5f10fce8a1a6380", "view.bcf.csi": "d9b9cf2a776df2cf0258b8326662f09604ebc45a88025fd03df74167313633a6" }, - "meta_sha256": "30bd6bbb89ffb32569c67830cd2fd259d97e068a7c3deab7c297f4d38963483a", + "meta_sha256": "70e9c980b7e9f93317a9e0654d50c8a2a94a8df966621714bd7165ec5b8a4a2c", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/CONST_50K/receipts/identity_scan_51934599.json b/method_inputs/a1/CONST_50K/receipts/identity_scan_51934599.json index d08675b8e5ab8d142ff3b24c1aa6daeef11fc694..96581a8d97b7d6cfafdd8d43275724859c9a397c 100644 --- a/method_inputs/a1/CONST_50K/receipts/identity_scan_51934599.json +++ b/method_inputs/a1/CONST_50K/receipts/identity_scan_51934599.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "78a7157d44fb3bc5871cdfc34c4bce2499e75a598eb6a395b9f61b95c620f797" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T11:24:47Z" diff --git a/method_inputs/a1/CONST_50K/receipts/open_audit_51934599.json b/method_inputs/a1/CONST_50K/receipts/open_audit_51934599.json index b8ccb6a5fca7f773e8859ad3f5ebc7a1208e97df..3b17812034e42fa5d446eac6711218e759d96b83 100644 --- a/method_inputs/a1/CONST_50K/receipts/open_audit_51934599.json +++ b/method_inputs/a1/CONST_50K/receipts/open_audit_51934599.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_50K/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_50K/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_50K/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_50K/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_50K/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_50K/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_CONST_50K/receipts/identity_scan_51934599.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_CONST_50K/receipts/identity_scan_51934599.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_50K/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_50K/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_CONST_50K/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_CONST_50K/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - 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"cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_Constant/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_Constant/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "e437e19383e4dcf56c83bcde805d3e57a452a7cf85e0c306ce8873e7aa0d5643", "canonical_id": "9dcbadba06bd4b48ab40b32e11d9f75b50edb177400d3970f9beaf2d2cf0d89e:00000000", @@ -50,7 +50,7 @@ "view.bcf": "1a4f9517d3c1866f1163972e502e50f594059cddb64649a607691642491b5e8a", "view.bcf.csi": "6f7fbff8baecf7535503574ae2733358a0adc4232d0049590d11d5d4fb60c0af" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "62a69c6de84c5f273d41f800fcbed5ec2159a3888ff57f6ea2f7be7478ae91cc", "ladder_columns": [ 39, diff --git a/method_inputs/a1/Constant/r00000001/n32/meta.json b/method_inputs/a1/Constant/r00000001/n32/meta.json index b11b3281d4edb445db05fd9d78590801d4c58441..a6eb78cffd87c196c1b1ae52f525ceb7a80d7dde 100644 --- a/method_inputs/a1/Constant/r00000001/n32/meta.json +++ b/method_inputs/a1/Constant/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 72013, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_Constant/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_Constant/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "e437e19383e4dcf56c83bcde805d3e57a452a7cf85e0c306ce8873e7aa0d5643", "canonical_id": "9dcbadba06bd4b48ab40b32e11d9f75b50edb177400d3970f9beaf2d2cf0d89e:00000001", @@ -50,7 +50,7 @@ "view.bcf": "5d412a07d628554c2d26c0e59159ef9cd878bec54f5bc1f007b5ca6155f70cbf", "view.bcf.csi": "a3d976d3f8a94e9f66dfe90baa33f23b65084838806e2c1abf060ab957affb01" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "62a69c6de84c5f273d41f800fcbed5ec2159a3888ff57f6ea2f7be7478ae91cc", "ladder_columns": [ 16, diff --git a/method_inputs/a1/Constant/r00000002/n32/meta.json b/method_inputs/a1/Constant/r00000002/n32/meta.json index 158b6a8ad3203341f6e237f5632a98725bd51200..aae919c374a7740817fad97d185b039f4b6da7c5 100644 --- a/method_inputs/a1/Constant/r00000002/n32/meta.json +++ b/method_inputs/a1/Constant/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 70485, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_Constant/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_Constant/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "e437e19383e4dcf56c83bcde805d3e57a452a7cf85e0c306ce8873e7aa0d5643", "canonical_id": "9dcbadba06bd4b48ab40b32e11d9f75b50edb177400d3970f9beaf2d2cf0d89e:00000002", @@ -50,7 +50,7 @@ "view.bcf": "2ad21a6395bc8f32c32d6ecb47d290a256155b6a8be21ed05556c590222bd295", "view.bcf.csi": "b1b9416d4e3b3e33c7790beb49b761084c5a71d7a3bd535aa492210577fedd33" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "62a69c6de84c5f273d41f800fcbed5ec2159a3888ff57f6ea2f7be7478ae91cc", "ladder_columns": [ 23, diff --git a/method_inputs/a1/Constant/r00000003/n32/meta.json b/method_inputs/a1/Constant/r00000003/n32/meta.json index db1e821770bbc05c229afe087223789469cf4072..64530e890e22ae942581dc91ef752acfae06d392 100644 --- a/method_inputs/a1/Constant/r00000003/n32/meta.json +++ b/method_inputs/a1/Constant/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 71380, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_Constant/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_Constant/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "e437e19383e4dcf56c83bcde805d3e57a452a7cf85e0c306ce8873e7aa0d5643", "canonical_id": "9dcbadba06bd4b48ab40b32e11d9f75b50edb177400d3970f9beaf2d2cf0d89e:00000003", @@ -50,7 +50,7 @@ "view.bcf": "e14e144a091d4b0874898bc38528805877535d01e53b609f483ab1f981229592", "view.bcf.csi": "d20015f7f31a696dfd417599fe3f9b88bb5379c81c00090d2146a7d2c656cca5" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "62a69c6de84c5f273d41f800fcbed5ec2159a3888ff57f6ea2f7be7478ae91cc", "ladder_columns": [ 35, diff --git a/method_inputs/a1/Constant/r00000004/n32/meta.json b/method_inputs/a1/Constant/r00000004/n32/meta.json index 366e896a21d887b9667eb48142c90067f1bee4d2..31974d64d950d6a15ed003c8ccf2f74a2f01c5e0 100644 --- a/method_inputs/a1/Constant/r00000004/n32/meta.json +++ b/method_inputs/a1/Constant/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 70646, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_Constant/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_Constant/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "e437e19383e4dcf56c83bcde805d3e57a452a7cf85e0c306ce8873e7aa0d5643", "canonical_id": "9dcbadba06bd4b48ab40b32e11d9f75b50edb177400d3970f9beaf2d2cf0d89e:00000004", @@ -50,7 +50,7 @@ "view.bcf": "09f12504a605614fafb2091a4b0a095506bf3f52144e8e7c51526023bc5f290d", "view.bcf.csi": "e928207ea5c93636ccbd08dd82ec13333f4e49adc0bd2bf7a69e957851a099ba" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "b4d463cd9f07e06f176b02daa62c2bc2c1d18fb53bba323ee5274880afd87941", "ladder_columns": [ 22, diff --git a/method_inputs/a1/Constant/r00000005/n32/meta.json b/method_inputs/a1/Constant/r00000005/n32/meta.json index 4802290002547eb5d64b3db69dc4f45afa94664b..3af65bafaa1039644f53f481627de96d7d8f360f 100644 --- a/method_inputs/a1/Constant/r00000005/n32/meta.json +++ b/method_inputs/a1/Constant/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 70693, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_Constant/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_Constant/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "e437e19383e4dcf56c83bcde805d3e57a452a7cf85e0c306ce8873e7aa0d5643", "canonical_id": "9dcbadba06bd4b48ab40b32e11d9f75b50edb177400d3970f9beaf2d2cf0d89e:00000005", @@ -50,7 +50,7 @@ "view.bcf": "24188ecc6395470826d052351732c9d0cf636c271b15559f44b19fc2bb23e2eb", "view.bcf.csi": "7c7b99b94d999e7e631935e1e81abf5be5b250a2bdfcf0eb35fe0e7cf161e91d" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "b4d463cd9f07e06f176b02daa62c2bc2c1d18fb53bba323ee5274880afd87941", "ladder_columns": [ 8, diff --git a/method_inputs/a1/Constant/r00000006/n32/meta.json b/method_inputs/a1/Constant/r00000006/n32/meta.json index e6f08cb49b261a6f8345d9c5e3b8d50814f19d15..a508ce9d8f741c72fc2f20c2b2bbf51672cdc9b3 100644 --- a/method_inputs/a1/Constant/r00000006/n32/meta.json +++ b/method_inputs/a1/Constant/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 69660, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_Constant/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_Constant/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "e437e19383e4dcf56c83bcde805d3e57a452a7cf85e0c306ce8873e7aa0d5643", "canonical_id": "9dcbadba06bd4b48ab40b32e11d9f75b50edb177400d3970f9beaf2d2cf0d89e:00000006", @@ -50,7 +50,7 @@ "view.bcf": "2d88a762740d9fbad8bed5f835aadf7a8f1fb113c8f1756d610fd4c29c5f5225", "view.bcf.csi": "57dccc6c8b50ba9fb9d7e2a0dc63262de68898416a98b2d07dd5329db1b71de9" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "b4d463cd9f07e06f176b02daa62c2bc2c1d18fb53bba323ee5274880afd87941", "ladder_columns": [ 60, diff --git a/method_inputs/a1/Constant/r00000007/n32/meta.json b/method_inputs/a1/Constant/r00000007/n32/meta.json index a1b704d2f00677d932fffaf095aadeb8c6f75eda..dbd0d8db5f67d5004ba21694b8288c6fbb822412 100644 --- a/method_inputs/a1/Constant/r00000007/n32/meta.json +++ b/method_inputs/a1/Constant/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 69790, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_Constant/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_Constant/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "e437e19383e4dcf56c83bcde805d3e57a452a7cf85e0c306ce8873e7aa0d5643", "canonical_id": "9dcbadba06bd4b48ab40b32e11d9f75b50edb177400d3970f9beaf2d2cf0d89e:00000007", @@ -50,7 +50,7 @@ "view.bcf": "9c764c0cee4ba4196e148d39d26d4591931fc8b5ea751039dd3254de83b8ae84", "view.bcf.csi": "a3274c0aa783e50664c3e0a4c3a03b3b63b995340593efe9bd71c58376f18b95" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "b4d463cd9f07e06f176b02daa62c2bc2c1d18fb53bba323ee5274880afd87941", "ladder_columns": [ 31, diff --git a/method_inputs/a1/Constant/receipts/export_51933478.json b/method_inputs/a1/Constant/receipts/export_51933478.json index 29f916add56506fd62e3f467cf1d5c8d14ab2f19..47e731c786be83f05571d00703615ba91b5cb6bc 100644 --- a/method_inputs/a1/Constant/receipts/export_51933478.json +++ b/method_inputs/a1/Constant/receipts/export_51933478.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_Constant", "host": "cn604-18", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_Constant/receipts/identity_scan_51933478.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_Constant/receipts/identity_scan_51933478.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "92782dfe912f0310d65da3bcab6c89a2d331d885e8192dcea307ac91f8952a92" + "sha256": "46daedaa012f1deb693e867c98553e4188956aae6add58f52a00147ae0e0a8f8" }, "job": "51933478", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_Constant/receipts/open_audit_51933478.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_Constant/receipts/open_audit_51933478.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "e437e19383e4dcf56c83bcde805d3e57a452a7cf85e0c306ce8873e7aa0d5643", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_Constant/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_Constant/r00000000/n32", "files": { "multihetsep.txt": "0469d023a653aea7987601aee5616d4d4ae3c21bc8294e52c4851b9fe392a48e", "phlash_contig.npz": "3548e6cbf28270b14569eac79a8abdc6ca7a2de7bf75182637bc34c3a7a537ff", @@ -54,7 +54,7 @@ "view.bcf": "1a4f9517d3c1866f1163972e502e50f594059cddb64649a607691642491b5e8a", "view.bcf.csi": "6f7fbff8baecf7535503574ae2733358a0adc4232d0049590d11d5d4fb60c0af" }, - "meta_sha256": "48d7b204134f6e13314c4ffb128cb96a09263543f34cca9f446ce6dbf7d24d5d", + "meta_sha256": "c2dfb5b45c3565fcdbf8c39404537f6b7047fbfe95336626aa948ba23770068d", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "e437e19383e4dcf56c83bcde805d3e57a452a7cf85e0c306ce8873e7aa0d5643", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_Constant/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_Constant/r00000001/n32", "files": { "multihetsep.txt": "16e80eb25a38181376947e64f19f2769ab069a0105082a862b40263e56edeb9f", "phlash_contig.npz": "a7b13dc43d2267e802d1b5db5ad61343e507b328256fc0f291c2ee66fc3cf2df", @@ -93,7 +93,7 @@ "view.bcf": "5d412a07d628554c2d26c0e59159ef9cd878bec54f5bc1f007b5ca6155f70cbf", "view.bcf.csi": "a3d976d3f8a94e9f66dfe90baa33f23b65084838806e2c1abf060ab957affb01" }, - "meta_sha256": "c1843423d10112dc9019e59b86e8c93474b9da7139036c7a8eebb05e95b43f3d", + "meta_sha256": "07fdb81dc491062d3577b18ce667d68f32b1d33b377a7d42442b7d7eac1cdca6", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "e437e19383e4dcf56c83bcde805d3e57a452a7cf85e0c306ce8873e7aa0d5643", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_Constant/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_Constant/r00000002/n32", "files": { "multihetsep.txt": "e7f3cb363f8cf56e59d7dbedbb0ee728a75e4cf419940355acdcfd285abef555", "phlash_contig.npz": "3ad6aa07c0c4bdcc393cdf0acd72ae0cdba4b782cd52f729ca82468c24c9ce1e", @@ -132,7 +132,7 @@ "view.bcf": "2ad21a6395bc8f32c32d6ecb47d290a256155b6a8be21ed05556c590222bd295", "view.bcf.csi": "b1b9416d4e3b3e33c7790beb49b761084c5a71d7a3bd535aa492210577fedd33" }, - "meta_sha256": "bf1d48fbfbec1ca5ccff4f5d4114d1dc10e01f9ef6bc4c16907f8ad5a518bcb3", + "meta_sha256": "72fdf666d236c1d9324556a70d279e4919378b4017f51999ffbc3a6a80abe041", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "e437e19383e4dcf56c83bcde805d3e57a452a7cf85e0c306ce8873e7aa0d5643", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_Constant/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_Constant/r00000003/n32", "files": { "multihetsep.txt": "e6156835a77c984f66468050ab40978a913321ad2afa79ed10c269cef651b102", "phlash_contig.npz": "10286ec72011061d978f9c61d75fd6f8ae2c4e75eb51e952546534afa8afd716", @@ -171,7 +171,7 @@ "view.bcf": "e14e144a091d4b0874898bc38528805877535d01e53b609f483ab1f981229592", "view.bcf.csi": "d20015f7f31a696dfd417599fe3f9b88bb5379c81c00090d2146a7d2c656cca5" }, - "meta_sha256": "4347e1d6050d1cf79cddd0682b24e23d147c0a18e985df8789a5913806bbf6cb", + "meta_sha256": "142abc7b37b12c0892069ae448bc225d35aaca3015eccddfa1fe7ae8b9f446a7", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "e437e19383e4dcf56c83bcde805d3e57a452a7cf85e0c306ce8873e7aa0d5643", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_Constant/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_Constant/r00000004/n32", "files": { "multihetsep.txt": "1a455df094a842b62f7d0eb5159dfd7eb0014f57061c57472d4ddbfdfd15aad5", "phlash_contig.npz": "b1ef230c354fa46cd91a193a4c2e8f88892378ea4cb3d0f9c6a26da53f5664e0", @@ -210,7 +210,7 @@ "view.bcf": "09f12504a605614fafb2091a4b0a095506bf3f52144e8e7c51526023bc5f290d", "view.bcf.csi": "e928207ea5c93636ccbd08dd82ec13333f4e49adc0bd2bf7a69e957851a099ba" }, - "meta_sha256": "9e7c5be3aa8bd2b48043978c145ad228886d1e4424d11e30db687ad3b15174ce", + "meta_sha256": "8d47b0e0dbf59e605fbfcf2776540dbf6c7b0df43af52c1a2157d2a89422816d", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "e437e19383e4dcf56c83bcde805d3e57a452a7cf85e0c306ce8873e7aa0d5643", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_Constant/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_Constant/r00000005/n32", "files": { "multihetsep.txt": "a499bbabe1160ce0fe846fbe7416b879e64ca2409c1a08526dc013116362a339", "phlash_contig.npz": "bd997f6f86ebbd1b001e1099c590316d838edce08e38c8a3e430542134ae77ba", @@ -249,7 +249,7 @@ "view.bcf": "24188ecc6395470826d052351732c9d0cf636c271b15559f44b19fc2bb23e2eb", "view.bcf.csi": "7c7b99b94d999e7e631935e1e81abf5be5b250a2bdfcf0eb35fe0e7cf161e91d" }, - "meta_sha256": "95dff2afb631dac1cc570346ea09c18f4e3477140a50f1c657fb4c64c12db1fc", + "meta_sha256": "48cc193f17e204d051f8a88e6e63e3988aa91e4a513f4e1b7a5b6183adc5a1d7", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "e437e19383e4dcf56c83bcde805d3e57a452a7cf85e0c306ce8873e7aa0d5643", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_Constant/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_Constant/r00000006/n32", "files": { "multihetsep.txt": "5eac30a8c7616a7f68e9a422821f774bcec2e18c83e34a6aada5c4c8eb85019f", "phlash_contig.npz": "08b731f4b90e45d26e9fc0496b866948ad246b1c828321a32e9844d05a1b3c22", @@ -288,7 +288,7 @@ "view.bcf": "2d88a762740d9fbad8bed5f835aadf7a8f1fb113c8f1756d610fd4c29c5f5225", "view.bcf.csi": "57dccc6c8b50ba9fb9d7e2a0dc63262de68898416a98b2d07dd5329db1b71de9" }, - "meta_sha256": "3834ac0989e37a005fc33bb3660dc59149b1553d54ab2d31460cc1561134dc55", + "meta_sha256": "43d2af52a93e11fb417651a579f24f4ef3a2695bcee27b3d7e1e91bb84da2cfd", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "e437e19383e4dcf56c83bcde805d3e57a452a7cf85e0c306ce8873e7aa0d5643", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_Constant/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_Constant/r00000007/n32", "files": { "multihetsep.txt": "1ab9b3e55a19990fa12d6a0eff03d66b4be5c41b034bc5b530c7f52ef70bcd34", "phlash_contig.npz": "f91b170afc43cedeb0e1f789520689886238aaab152ba84d8dbd38a2f34d3ba0", @@ -327,7 +327,7 @@ "view.bcf": "9c764c0cee4ba4196e148d39d26d4591931fc8b5ea751039dd3254de83b8ae84", "view.bcf.csi": "a3274c0aa783e50664c3e0a4c3a03b3b63b995340593efe9bd71c58376f18b95" }, - "meta_sha256": "16edff52e32e01e6b06691fce592b859319d83a8ccf88a297bdab59a76739b6c", + "meta_sha256": "32a5482922cd6fc14cef2a7879c6e0d3e51b75d7dccd935b68b1111d08fcd288", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/Constant/receipts/identity_scan_51933478.json b/method_inputs/a1/Constant/receipts/identity_scan_51933478.json index e6267fdbbbc0d99615f8b2393496bb6c52a96973..eb93f98cdf75b496f44775faa609b0d88a94e858 100644 --- a/method_inputs/a1/Constant/receipts/identity_scan_51933478.json +++ b/method_inputs/a1/Constant/receipts/identity_scan_51933478.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "9dcbadba06bd4b48ab40b32e11d9f75b50edb177400d3970f9beaf2d2cf0d89e" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T11:05:05Z" diff --git a/method_inputs/a1/Constant/receipts/open_audit_51933478.json b/method_inputs/a1/Constant/receipts/open_audit_51933478.json index f3aa04a322790100e9055ac2e421c6513cd01b66..7052a06c25e927f65c8c93a2f1a5ad08d3acfafa 100644 --- a/method_inputs/a1/Constant/receipts/open_audit_51933478.json +++ b/method_inputs/a1/Constant/receipts/open_audit_51933478.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_Constant/receipts/identity_scan_51933478.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_Constant/receipts/identity_scan_51933478.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_Constant/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_Constant/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_Constant/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_Constant/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_Constant/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "r", - 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"fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_CEU/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_CEU/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "dc4128c232d5f99d89e590f80c8e62b3dae5f398a15dd38abfdde4576607e64a", "ladder_columns": [ 22, diff --git a/method_inputs/a1/EMP_CEU/r00000005/n32/meta.json b/method_inputs/a1/EMP_CEU/r00000005/n32/meta.json index 734786800215c762afcf7825aa149965787ee808..ff1dbff8f25b97e4d3ddfbda798ccf1d854dbf4f 100644 --- a/method_inputs/a1/EMP_CEU/r00000005/n32/meta.json +++ b/method_inputs/a1/EMP_CEU/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 109287, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_CEU/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_CEU/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "d6d5e8d37de3877f9e9a25f730d0f18817d850e881b4a24acc34376afe9f7496", "canonical_id": "e9955a1d0a1b9aac180cad8d5a5c5550e96b8df8468d338c2809062f95e68f6a:00000005", @@ -50,7 +50,7 @@ "view.bcf": "e80edffd0defb93c3a0e70ef299ca673cf1e18a953ce43462982d055d697fa1e", "view.bcf.csi": "d4316aa29bacfdefbe1e68383d7c5ece3722fc49444492445caa70bafe14f59f" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_CEU/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_CEU/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "dc4128c232d5f99d89e590f80c8e62b3dae5f398a15dd38abfdde4576607e64a", "ladder_columns": [ 8, diff --git a/method_inputs/a1/EMP_CEU/r00000006/n32/meta.json b/method_inputs/a1/EMP_CEU/r00000006/n32/meta.json index de22f599d7674a36f09a04694a277efd66ba8d84..152aac8e7facb1ac0be8bdeab56c464322050580 100644 --- a/method_inputs/a1/EMP_CEU/r00000006/n32/meta.json +++ b/method_inputs/a1/EMP_CEU/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 109900, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_CEU/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_CEU/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "d6d5e8d37de3877f9e9a25f730d0f18817d850e881b4a24acc34376afe9f7496", "canonical_id": "e9955a1d0a1b9aac180cad8d5a5c5550e96b8df8468d338c2809062f95e68f6a:00000006", @@ -50,7 +50,7 @@ "view.bcf": "44c13a7e351aa8dbcc9b86c09cdb47607a34b296e115892184dc39b8ce0e177d", "view.bcf.csi": "11b9238a936f5d4b12e8ee33c20b31cff920f0c669b6d97f485c572ccd8ca8a2" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_CEU/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_CEU/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "dc4128c232d5f99d89e590f80c8e62b3dae5f398a15dd38abfdde4576607e64a", "ladder_columns": [ 60, diff --git a/method_inputs/a1/EMP_CEU/r00000007/n32/meta.json b/method_inputs/a1/EMP_CEU/r00000007/n32/meta.json index 0a42c39546bb6ebde9355d8a742749a0f306ea5d..54af23ba3a746ff2e20cbf47b6e7d8eb48498f45 100644 --- a/method_inputs/a1/EMP_CEU/r00000007/n32/meta.json +++ b/method_inputs/a1/EMP_CEU/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 109970, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_CEU/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_CEU/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "d6d5e8d37de3877f9e9a25f730d0f18817d850e881b4a24acc34376afe9f7496", "canonical_id": "e9955a1d0a1b9aac180cad8d5a5c5550e96b8df8468d338c2809062f95e68f6a:00000007", @@ -50,7 +50,7 @@ "view.bcf": "452f6817dc1987e7bf9599ba215480084a4c6b5440691d147131d35a914f65ce", "view.bcf.csi": "60c4a6d39a7fbdb69fe5b0133c8b262eee78030ecc3ab6c033e1be7486d34527" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_CEU/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_CEU/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "dc4128c232d5f99d89e590f80c8e62b3dae5f398a15dd38abfdde4576607e64a", "ladder_columns": [ 31, diff --git a/method_inputs/a1/EMP_CEU/receipts/export_51933094.json b/method_inputs/a1/EMP_CEU/receipts/export_51933094.json index 11b2d68f6c7ceb2e3f720f1ab39a9e1128bd90b6..9f6a48c8bb05a99d0cbf7e45c0f82a0153181a8f 100644 --- a/method_inputs/a1/EMP_CEU/receipts/export_51933094.json +++ b/method_inputs/a1/EMP_CEU/receipts/export_51933094.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_EMP_CEU", "host": "cn113-35-l", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CEU/receipts/identity_scan_51933094.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CEU/receipts/identity_scan_51933094.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "bc66d3e34b08bf2395ce1b4c00d2453ca2f4f9d80d87dada555cbcc1674ee212" + "sha256": "df774d6eee804af30126192a656942b10d840a42d37601cc8a09eb0961fc6395" }, "job": "51933094", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CEU/receipts/open_audit_51933094.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CEU/receipts/open_audit_51933094.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "d6d5e8d37de3877f9e9a25f730d0f18817d850e881b4a24acc34376afe9f7496", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CEU/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CEU/r00000000/n32", "files": { "multihetsep.txt": "aced375e78c2f1aed66b0ed6305d2f896e94d3110458d54a1749d3da377e2a62", "phlash_contig.npz": "9bd6b3c52c52b186a3a076171e41c39f9d5c5a509b2bb253bc97778cc8f0598b", @@ -54,7 +54,7 @@ "view.bcf": "b70bbdd5753deb1b516ec8597af77db92b0abee346b1717a495b11d154c86144", "view.bcf.csi": "10739a3d8bd113c970c41c4c0690a58926c394d492df7cc21d628d1ac765bbbf" }, - "meta_sha256": "85ecae7bffa5e8d80736ff829eb71f2acd120a0e3e0eb2dc29c71e3f36ea43c6", + "meta_sha256": "7dde686b371a1dc35e0389dfcd1c5d0d389bcba1917daaf09014527b74b4c4bf", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "d6d5e8d37de3877f9e9a25f730d0f18817d850e881b4a24acc34376afe9f7496", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CEU/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CEU/r00000001/n32", "files": { "multihetsep.txt": "ac9a57235372c5fca0fad6a5ced54c9dd7a086cdb2b2d92c2f4c62745095b617", "phlash_contig.npz": "ef16bcaa67ae82aba5620f882213ffe0c45dae9bc6c463b0ba100728f9bb7951", @@ -93,7 +93,7 @@ "view.bcf": "a63a5b6b758027943ab64f5ea1341f34d7557f3d0d65f8659d80346ab056a2d3", "view.bcf.csi": "8a6093d9dc5de25bcd7625601ca38f91ba3542cf4b433755c6f2493de0a8afa2" }, - "meta_sha256": "330c3d015bbbe29a632391a454ae2481151fa482c58b9824da98a9db708c877d", + "meta_sha256": "bde46b01fc2b49968330fb2e01a3fa7c767de900cabd5deb15fe8c2ba34230ef", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "d6d5e8d37de3877f9e9a25f730d0f18817d850e881b4a24acc34376afe9f7496", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CEU/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CEU/r00000002/n32", "files": { "multihetsep.txt": "ddab9dca530441c7f7bd6a86ed48e23543cef3a6c6dc69a009fd0c16958a6586", "phlash_contig.npz": "37b0ced5cc73aa46b3a5c33123705177c48c9070b2420c9a26f364ba726f44bb", @@ -132,7 +132,7 @@ "view.bcf": "6e582e778ab88056b1facd22e4fbf200e1f06c5a0d4bec0c8a5e46862806e2c6", "view.bcf.csi": "f907f5b1dcd667f166aa8a94fc482936619dabe33c2d3dc7c6d0f3c50b7e2cba" }, - "meta_sha256": "de42090bdd5b5c2a74d8b9c67c39a1f62ff846aeafb29fd6e03c1a8d477f0771", + "meta_sha256": "e74ba4f787fdc738abda4f37cf6a2c640b5cb673ce343b4839d594dc7b26275a", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "d6d5e8d37de3877f9e9a25f730d0f18817d850e881b4a24acc34376afe9f7496", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CEU/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CEU/r00000003/n32", "files": { "multihetsep.txt": "e1d706cda741308bcdf5c12a1df9334647b3a38745caf382daebe4f5ece27400", "phlash_contig.npz": "0933bf782a70045f83916ab6cfd3208c1c035f8fec6b03c0fc07ee31d4e7a3e8", @@ -171,7 +171,7 @@ "view.bcf": "e3ab050319bd7ab533509ae1168865388a2f65f7389258e90c22fcf2cf6a1d45", "view.bcf.csi": "88fc64ef4577be4bccbce7f9637ac1be002dedfe17ce8e0606f3642ff75ea666" }, - "meta_sha256": "e86bf804afc35517bf7713c16da733dfa5f0b6e4c253b3f3a46925fbd87d60d3", + "meta_sha256": "c0fc1bee95b7f8fb4119c999ec4a3235788ec40137dccad11351c109420ab234", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "d6d5e8d37de3877f9e9a25f730d0f18817d850e881b4a24acc34376afe9f7496", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CEU/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CEU/r00000004/n32", "files": { "multihetsep.txt": "f2d17023e47045f895b9fcf914c5a726d6dedcd9f5ec9af2ff4a0c5303ea8129", "phlash_contig.npz": "7158613d34ec7c1acf6fc03e75e29fce5f614abf32630fbcbf4bbf18913be713", @@ -210,7 +210,7 @@ "view.bcf": "22aa9201f7bc19aef24253003ba27333bba2fa908cd7de5cf2df7d81f3d47ee7", "view.bcf.csi": "0e3c6b20bf672c41b5cac97d564d82fb141379eee98a70837a7c9cc75cc04800" }, - "meta_sha256": "c156218e9587e884997ef7634b1be205dfb4c62766e18a94740b3221c7861728", + "meta_sha256": "b83b7312392386c29ae48de231444c558a5055699f8bbdcb816d04cabe323970", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "d6d5e8d37de3877f9e9a25f730d0f18817d850e881b4a24acc34376afe9f7496", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CEU/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CEU/r00000005/n32", "files": { "multihetsep.txt": "9ca9f59f7aa1d16e8a1b548780c8e0b30b10efe9005af2b0db2e334e5f4be408", "phlash_contig.npz": "63e035ac1f4a07d6132caa274c38de768b17857340dc1269219d94c7b673ca44", @@ -249,7 +249,7 @@ "view.bcf": "e80edffd0defb93c3a0e70ef299ca673cf1e18a953ce43462982d055d697fa1e", "view.bcf.csi": "d4316aa29bacfdefbe1e68383d7c5ece3722fc49444492445caa70bafe14f59f" }, - "meta_sha256": "fefa68aa68357249d02e9fff96cec381d2964c6dc6968bf6af85772b145c872c", + "meta_sha256": "cdbdaf77718440d829aa9317f428b72133011f46232040dfa134f2c545c484c0", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "d6d5e8d37de3877f9e9a25f730d0f18817d850e881b4a24acc34376afe9f7496", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CEU/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CEU/r00000006/n32", "files": { "multihetsep.txt": "5c053752b0b96d1e6d7f4c901f6b0bf70bf10fc6d958938cd7a9db582c9a1394", "phlash_contig.npz": "2f2080b640cba42e3dc5228c5bb5eafb446569d65952b018933bed2bcd1a60ec", @@ -288,7 +288,7 @@ "view.bcf": "44c13a7e351aa8dbcc9b86c09cdb47607a34b296e115892184dc39b8ce0e177d", "view.bcf.csi": "11b9238a936f5d4b12e8ee33c20b31cff920f0c669b6d97f485c572ccd8ca8a2" }, - "meta_sha256": "a960c4f2ca7979d5b6dc3897129a3467d408a6d55f29c565ce5b75de088d4a26", + "meta_sha256": "8392f20ca3e184cfa86026ed12266769df0cae1aabe31bad13c1132698a34866", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "d6d5e8d37de3877f9e9a25f730d0f18817d850e881b4a24acc34376afe9f7496", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CEU/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CEU/r00000007/n32", "files": { "multihetsep.txt": "06a10258f9c748aa7674fb3376c4cbba16617bdd6388fbdc495d3382773e8f63", "phlash_contig.npz": "9b010ddff1f8b53ddae17f3e6d5e5ac397b9ad769af7878910b70b46da3206b5", @@ -327,7 +327,7 @@ "view.bcf": "452f6817dc1987e7bf9599ba215480084a4c6b5440691d147131d35a914f65ce", "view.bcf.csi": "60c4a6d39a7fbdb69fe5b0133c8b262eee78030ecc3ab6c033e1be7486d34527" }, - "meta_sha256": "cbcbd3b429cc17cfa96e03e8fe50155bba97f6f54fefc7b38269fe8b97fe5417", + "meta_sha256": "61e0feb13d688854442cc8314f98f80e74a78eed3cb10a536439626a262c08b6", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/EMP_CEU/receipts/identity_scan_51933094.json b/method_inputs/a1/EMP_CEU/receipts/identity_scan_51933094.json index 6836b8fde45dbf998fae0b7cc6c4edb9f70c43cd..a69b900dd5da5ea7371082274405cd042afacf5e 100644 --- a/method_inputs/a1/EMP_CEU/receipts/identity_scan_51933094.json +++ b/method_inputs/a1/EMP_CEU/receipts/identity_scan_51933094.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "e9955a1d0a1b9aac180cad8d5a5c5550e96b8df8468d338c2809062f95e68f6a" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T10:57:21Z" diff --git a/method_inputs/a1/EMP_CEU/receipts/open_audit_51933094.json b/method_inputs/a1/EMP_CEU/receipts/open_audit_51933094.json index 53b01f455cc6eb6eea07510b20c1a1380c24c6a2..92c07a094e8c7b82169817d78f4c0fc4d336c864 100644 --- a/method_inputs/a1/EMP_CEU/receipts/open_audit_51933094.json +++ b/method_inputs/a1/EMP_CEU/receipts/open_audit_51933094.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_CEU/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_CEU/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_CEU/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_CEU/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_CEU/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_CEU/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CEU/receipts/identity_scan_51933094.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CEU/receipts/identity_scan_51933094.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_CEU/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_CEU/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_CEU/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_CEU/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - 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"cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_CHB/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_CHB/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "66a075ba6cbc116a9bfd46fc9011687f657de496eabf8f62bc27191e8c311194", "canonical_id": "c91280680f37618775ee19d35c63d30036e3e30ed62af732003102812d88c604:00000000", @@ -50,7 +50,7 @@ "view.bcf": "10614ea41983082114f46650801a7f7f8d525ae3dce6282bacfac5aa120a6bdf", "view.bcf.csi": "e3eb0d62036ad1801bbbe9ed9436982d5f5cb28d1e4d37c1ff0c384659ed6b19" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "2d788a6bbf6ce854c65212142594b6392d00d0b4b69b806ddbb0a553db611460", "ladder_columns": [ 39, diff --git a/method_inputs/a1/EMP_CHB/r00000001/n32/meta.json b/method_inputs/a1/EMP_CHB/r00000001/n32/meta.json index b14dacd009fe4198749457aacfa7c506b8cbfc89..c44ccf02b8460ab863df2e00ab27bda61d678a3d 100644 --- a/method_inputs/a1/EMP_CHB/r00000001/n32/meta.json +++ b/method_inputs/a1/EMP_CHB/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 102655, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_CHB/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_CHB/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "66a075ba6cbc116a9bfd46fc9011687f657de496eabf8f62bc27191e8c311194", "canonical_id": "c91280680f37618775ee19d35c63d30036e3e30ed62af732003102812d88c604:00000001", @@ -50,7 +50,7 @@ "view.bcf": "10ad57cf97a8d70a0db6362d5624c80f1c5b4fc2d4ecdead464615e0ef9c0959", "view.bcf.csi": "72284ddfc2287fa2121df9bc765a10d6539ef9f7acd2e836963f9066548b5f8b" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "2d788a6bbf6ce854c65212142594b6392d00d0b4b69b806ddbb0a553db611460", "ladder_columns": [ 16, diff --git a/method_inputs/a1/EMP_CHB/r00000002/n32/meta.json b/method_inputs/a1/EMP_CHB/r00000002/n32/meta.json index b7747538bb29a344b8ab01be8bdbfa295d1c0339..1c0ea4535256d23e041291cf37439f63d2ad985b 100644 --- a/method_inputs/a1/EMP_CHB/r00000002/n32/meta.json +++ b/method_inputs/a1/EMP_CHB/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 101895, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_CHB/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_CHB/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "66a075ba6cbc116a9bfd46fc9011687f657de496eabf8f62bc27191e8c311194", "canonical_id": "c91280680f37618775ee19d35c63d30036e3e30ed62af732003102812d88c604:00000002", @@ -50,7 +50,7 @@ "view.bcf": "4cf8b685001c69297d421b541838aa100de3504c65cf22bcc65a16866b75eaa6", "view.bcf.csi": "0375185f7616b95b992ddfdb667f439bae9da9712bf542e6056bee1005ef86c9" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "2d788a6bbf6ce854c65212142594b6392d00d0b4b69b806ddbb0a553db611460", "ladder_columns": [ 23, diff --git a/method_inputs/a1/EMP_CHB/r00000003/n32/meta.json b/method_inputs/a1/EMP_CHB/r00000003/n32/meta.json index 1931fddae84dae87c4ad18208d50a0cd2a5299b8..dbcd13f3a6bf0249f44f6f5c7d4629ed6bbcc870 100644 --- a/method_inputs/a1/EMP_CHB/r00000003/n32/meta.json +++ b/method_inputs/a1/EMP_CHB/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 102286, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_CHB/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_CHB/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "66a075ba6cbc116a9bfd46fc9011687f657de496eabf8f62bc27191e8c311194", "canonical_id": "c91280680f37618775ee19d35c63d30036e3e30ed62af732003102812d88c604:00000003", @@ -50,7 +50,7 @@ "view.bcf": "922f56af3652058f1cf02893ba17a5d8af569e84c57ba410d82c8a0f510eca85", "view.bcf.csi": "1e6c2d2af4926a09ce2912497740e23a3d06d32dbb0068245db40a0ad3645474" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "2d788a6bbf6ce854c65212142594b6392d00d0b4b69b806ddbb0a553db611460", "ladder_columns": [ 35, diff --git a/method_inputs/a1/EMP_CHB/r00000004/n32/meta.json b/method_inputs/a1/EMP_CHB/r00000004/n32/meta.json index 4b25c5398bc4dad8f4acbdebb9efb38b5fb94c89..e59be840a0b751a52aa9f05289613a4a65ef985d 100644 --- a/method_inputs/a1/EMP_CHB/r00000004/n32/meta.json +++ b/method_inputs/a1/EMP_CHB/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 102570, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_CHB/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_CHB/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "66a075ba6cbc116a9bfd46fc9011687f657de496eabf8f62bc27191e8c311194", "canonical_id": "c91280680f37618775ee19d35c63d30036e3e30ed62af732003102812d88c604:00000004", @@ -50,7 +50,7 @@ "view.bcf": "40bb4ce605e4aa7ad31401c3c1f6c8b86b53057871a9ca2fbeba48f9231c063f", "view.bcf.csi": "c7faadb3cd561bf538b6420d164aeb064d2a3ba10aad6d057dcf5779baa3a5f8" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "616f0acab61ce02f8e4024f644a9d8840d53c695c6a13bca405d681c1096217c", "ladder_columns": [ 22, diff --git a/method_inputs/a1/EMP_CHB/r00000005/n32/meta.json b/method_inputs/a1/EMP_CHB/r00000005/n32/meta.json index 5d6617e500682c6268bf03301035bffbeccd3f6e..13de5f93659e3e73929fe1a96599101e004d2563 100644 --- a/method_inputs/a1/EMP_CHB/r00000005/n32/meta.json +++ b/method_inputs/a1/EMP_CHB/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 101668, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_CHB/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_CHB/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "66a075ba6cbc116a9bfd46fc9011687f657de496eabf8f62bc27191e8c311194", "canonical_id": "c91280680f37618775ee19d35c63d30036e3e30ed62af732003102812d88c604:00000005", @@ -50,7 +50,7 @@ "view.bcf": "88bcc32ce4940287793a18663680373178a4c16fed0287f3fb07be9d53de04ef", "view.bcf.csi": "c22de995adf99093024b8ba206443a246626fa43c902b8697eb5e392258443e4" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "616f0acab61ce02f8e4024f644a9d8840d53c695c6a13bca405d681c1096217c", "ladder_columns": [ 8, diff --git a/method_inputs/a1/EMP_CHB/r00000006/n32/meta.json b/method_inputs/a1/EMP_CHB/r00000006/n32/meta.json index cbd74ab0170711a6e7b3808e4c03ba2fe1b2e6cc..48539b4634500b480a380fdad2e0f028872b1334 100644 --- a/method_inputs/a1/EMP_CHB/r00000006/n32/meta.json +++ b/method_inputs/a1/EMP_CHB/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 100671, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_CHB/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_CHB/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "66a075ba6cbc116a9bfd46fc9011687f657de496eabf8f62bc27191e8c311194", "canonical_id": "c91280680f37618775ee19d35c63d30036e3e30ed62af732003102812d88c604:00000006", @@ -50,7 +50,7 @@ "view.bcf": "bd0455bb0b331aad83aa9d03a3621e19e1eff93fc715ba90fb8a23fd5c309eb7", "view.bcf.csi": "fcd7980e2837e623c2a7ab1e44a8ad636e0a8035341b024a2dbd1059c20efbf9" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "616f0acab61ce02f8e4024f644a9d8840d53c695c6a13bca405d681c1096217c", "ladder_columns": [ 60, diff --git a/method_inputs/a1/EMP_CHB/r00000007/n32/meta.json b/method_inputs/a1/EMP_CHB/r00000007/n32/meta.json index a57b0a547543c711ba6cc9ebde87b92b6c1e8186..6b4fd4b79eb7f8a52dbb2789c3757912537b8245 100644 --- a/method_inputs/a1/EMP_CHB/r00000007/n32/meta.json +++ b/method_inputs/a1/EMP_CHB/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 101173, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_CHB/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_CHB/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "66a075ba6cbc116a9bfd46fc9011687f657de496eabf8f62bc27191e8c311194", "canonical_id": "c91280680f37618775ee19d35c63d30036e3e30ed62af732003102812d88c604:00000007", @@ -50,7 +50,7 @@ "view.bcf": "b4252a188e85125ea9d911e77a62c5196779e58891b183e6578ca0e7063b86f6", "view.bcf.csi": "f7a06f3c0987b39d4e5bae8a0e8c85404f9051fa27d3e1b893e6ac95461f42a9" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "616f0acab61ce02f8e4024f644a9d8840d53c695c6a13bca405d681c1096217c", "ladder_columns": [ 31, diff --git a/method_inputs/a1/EMP_CHB/receipts/export_51933097.json b/method_inputs/a1/EMP_CHB/receipts/export_51933097.json index 492e11cc9832da4bc59a5dc4186650ef55fbf92f..fb934562ebb5c892abc6548de09b116de346e324 100644 --- a/method_inputs/a1/EMP_CHB/receipts/export_51933097.json +++ b/method_inputs/a1/EMP_CHB/receipts/export_51933097.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_EMP_CHB", "host": "cn113-35-l", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CHB/receipts/identity_scan_51933097.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CHB/receipts/identity_scan_51933097.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "8c4edddd676217d783dead94f7dfde294b15d790cade1868a754bb8b3f4846a6" + "sha256": "5f4408f102cd6e7421279f10ede747e97ee34954446c92dd2f95dbb0cb2d8d40" }, "job": "51933097", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CHB/receipts/open_audit_51933097.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CHB/receipts/open_audit_51933097.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "66a075ba6cbc116a9bfd46fc9011687f657de496eabf8f62bc27191e8c311194", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000000/n32", "files": { "multihetsep.txt": "d1632276475e4794a6a7daee01dcd7c3bdb516d9077c6dac0a52c63e4239f959", "phlash_contig.npz": "fb46560b2ec0efebeba46da471e3641f827f3b4c445c7ce590f9277bba0a64a8", @@ -54,7 +54,7 @@ "view.bcf": "10614ea41983082114f46650801a7f7f8d525ae3dce6282bacfac5aa120a6bdf", "view.bcf.csi": "e3eb0d62036ad1801bbbe9ed9436982d5f5cb28d1e4d37c1ff0c384659ed6b19" }, - "meta_sha256": "7053e4d626da4629015c4a1e877913c7e2daaa69cb5db0eb63775ca36ebf40a1", + "meta_sha256": "244678040538573745761d13c5fc832b6a186307b2070646356cd11c8b9f96d7", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "66a075ba6cbc116a9bfd46fc9011687f657de496eabf8f62bc27191e8c311194", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000001/n32", "files": { "multihetsep.txt": "bcbe814d5d2d9f9d063da6a604d2ba5f08f20c2cca7d598664ce8aded349403e", "phlash_contig.npz": "943f9e2868d1763e6b764dcfd34c7500c8309e7a0c0d9218526168fe75b167cd", @@ -93,7 +93,7 @@ "view.bcf": "10ad57cf97a8d70a0db6362d5624c80f1c5b4fc2d4ecdead464615e0ef9c0959", "view.bcf.csi": "72284ddfc2287fa2121df9bc765a10d6539ef9f7acd2e836963f9066548b5f8b" }, - "meta_sha256": "4bd7d45808f59a48a6afad8f013afa3756c9d19d4955eb8592179fc37a0c2e5e", + "meta_sha256": "4d45e6df7ab3f718cae8ce6fc633bc1046aa057ef335b6bfa32ac3d8fab8dedf", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "66a075ba6cbc116a9bfd46fc9011687f657de496eabf8f62bc27191e8c311194", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000002/n32", "files": { "multihetsep.txt": "49a3a209dde658f1a315175d6fb47c235d108b2c16a9402d0a1d6d3e455d59ce", "phlash_contig.npz": "7412694f042b795dde437e484cdc25542f6004655b8eeca401efe495d7294375", @@ -132,7 +132,7 @@ "view.bcf": "4cf8b685001c69297d421b541838aa100de3504c65cf22bcc65a16866b75eaa6", "view.bcf.csi": "0375185f7616b95b992ddfdb667f439bae9da9712bf542e6056bee1005ef86c9" }, - "meta_sha256": "d1484af81198e588bd85e5825e42c9d1e04df5f4c42b5e350f1b2240ca072ac8", + "meta_sha256": "3070fcdb0ac6ae53efc5e9f91b7df35d43ef9c25ae17a642c22105e20250a81b", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "66a075ba6cbc116a9bfd46fc9011687f657de496eabf8f62bc27191e8c311194", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000003/n32", "files": { "multihetsep.txt": "419114e97d7b2112fab33620217a79811532f03833e5b712e78d104e781a1459", "phlash_contig.npz": "b6d37d2dd2fa36e6913ef01940e1dec002fe79ecc83d4d1101d5f691c7cdce7f", @@ -171,7 +171,7 @@ "view.bcf": "922f56af3652058f1cf02893ba17a5d8af569e84c57ba410d82c8a0f510eca85", "view.bcf.csi": "1e6c2d2af4926a09ce2912497740e23a3d06d32dbb0068245db40a0ad3645474" }, - "meta_sha256": "f41c8d094151a128ca723a05ed84b7d8bacb53fba6d2c81a95cf744bc6e3666f", + "meta_sha256": "ff17a6275660cc9a64ebb2728c1cb58f5e51d0958cffb4a2ce94c2e617e15213", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "66a075ba6cbc116a9bfd46fc9011687f657de496eabf8f62bc27191e8c311194", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000004/n32", "files": { "multihetsep.txt": "1694030eb7308feca8b74a9c7ce134f66e2376778065502bc367aa80ecea2bcb", "phlash_contig.npz": "715a9ff70a608300fed0b61e89087697ec65a0ac77cee85045a7428c6a967759", @@ -210,7 +210,7 @@ "view.bcf": "40bb4ce605e4aa7ad31401c3c1f6c8b86b53057871a9ca2fbeba48f9231c063f", "view.bcf.csi": "c7faadb3cd561bf538b6420d164aeb064d2a3ba10aad6d057dcf5779baa3a5f8" }, - "meta_sha256": "4eae412ee1786ec671f583e8bca21f6639053ecf31ffbe199ae12a7056279dd4", + "meta_sha256": "46217ca16a66138c8b17390b68884bb51ec247e12c24df738655814e71dbf1d1", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "66a075ba6cbc116a9bfd46fc9011687f657de496eabf8f62bc27191e8c311194", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000005/n32", "files": { "multihetsep.txt": "04e384250e14bba99c49cc03844418779093dc38c8155315c165262e83d859e8", "phlash_contig.npz": "ba7801325be5de27bd6b2222376eafe83db877394e15464fbdd0776f81fc5828", @@ -249,7 +249,7 @@ "view.bcf": "88bcc32ce4940287793a18663680373178a4c16fed0287f3fb07be9d53de04ef", "view.bcf.csi": "c22de995adf99093024b8ba206443a246626fa43c902b8697eb5e392258443e4" }, - "meta_sha256": "56e5b1db80b1330d0f749ba0a46e55e6300af45dad2d1969b39052196ec7e1f2", + "meta_sha256": "b95da5cfab47bd6d418eb86178787f53e698b893968ccb8ffc588f3e4efe0753", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "66a075ba6cbc116a9bfd46fc9011687f657de496eabf8f62bc27191e8c311194", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000006/n32", "files": { "multihetsep.txt": "be78f16e60564737c1400167a287cd91633a5554a299c86eb20754b8ad24d14c", "phlash_contig.npz": "e82b8c3d2694f39e3159de91ffdc1108be947e9e7d9735cba7a53310d51c6e1a", @@ -288,7 +288,7 @@ "view.bcf": "bd0455bb0b331aad83aa9d03a3621e19e1eff93fc715ba90fb8a23fd5c309eb7", "view.bcf.csi": "fcd7980e2837e623c2a7ab1e44a8ad636e0a8035341b024a2dbd1059c20efbf9" }, - "meta_sha256": "a994f1b491fdf806d1ff3f799164bff588d37f8f4f2b085e9019b6ecf6f2a811", + "meta_sha256": "51d46330a8a81c853ed3397c29a8664474bcc1c88ab5381e37d7cd1a8ca116a0", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "66a075ba6cbc116a9bfd46fc9011687f657de496eabf8f62bc27191e8c311194", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000007/n32", "files": { "multihetsep.txt": "fcbcb1f9bcfac5737d4b7e446d4e1e3bf621e067657108a82db5e43417d19d47", "phlash_contig.npz": "b5ded1ce9fb11e168be198bac0cc9fe76a4186552a687a04b31ed3ea1643a5bb", @@ -327,7 +327,7 @@ "view.bcf": "b4252a188e85125ea9d911e77a62c5196779e58891b183e6578ca0e7063b86f6", "view.bcf.csi": "f7a06f3c0987b39d4e5bae8a0e8c85404f9051fa27d3e1b893e6ac95461f42a9" }, - "meta_sha256": "65c5f5c6beb709b0a4629d426e5c026c027e72ae3fc141585ae6ee6291caa87a", + "meta_sha256": "f97261c31a0c092c0ae2aabdbaf597dca877c87cc4fded2b3691b17b16a0c6dc", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/EMP_CHB/receipts/identity_scan_51933097.json b/method_inputs/a1/EMP_CHB/receipts/identity_scan_51933097.json index d073d0ac004905271a6288d73d303655a5356b00..50712cdf5570b8088ebb538cd1bc735ccf4650d8 100644 --- a/method_inputs/a1/EMP_CHB/receipts/identity_scan_51933097.json +++ b/method_inputs/a1/EMP_CHB/receipts/identity_scan_51933097.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "c91280680f37618775ee19d35c63d30036e3e30ed62af732003102812d88c604" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T10:57:28Z" diff --git a/method_inputs/a1/EMP_CHB/receipts/open_audit_51933097.json b/method_inputs/a1/EMP_CHB/receipts/open_audit_51933097.json index 6813463eb7ef41c53cd22cea3414e6802c8abc0c..f07bf17eeba112f6f1a5f112d061f6b189833a4b 100644 --- a/method_inputs/a1/EMP_CHB/receipts/open_audit_51933097.json +++ b/method_inputs/a1/EMP_CHB/receipts/open_audit_51933097.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CHB/receipts/identity_scan_51933097.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CHB/receipts/identity_scan_51933097.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_CHB/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_CHB/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_CHB/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_CHB/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_CHB/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_CHB/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_CHB/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000000/.n32.tmp-vjzx3sn3/view.vcf" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000000/.n32.tmp-vjzx3sn3/view.vcf" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000000/.n32.tmp-vjzx3sn3/phlash_contig.npz" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000000/.n32.tmp-vjzx3sn3/phlash_contig.npz" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000000/.n32.tmp-vjzx3sn3/sfs_unfolded.npy" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000000/.n32.tmp-vjzx3sn3/sfs_unfolded.npy" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000000/.n32.tmp-vjzx3sn3/multihetsep.txt" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CHB/r00000000/.n32.tmp-vjzx3sn3/multihetsep.txt" }, { "mode": "r", - 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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_CHB/receipts/export_51933097.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_CHB/receipts/export_51933097.json" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/events.log" + "path": "$WORK/bench_h2h_20260915/events.log" } ], "purposes": [ diff --git a/method_inputs/a1/EMP_PNG/r00000000/n32/meta.json b/method_inputs/a1/EMP_PNG/r00000000/n32/meta.json index 365513fd31490a4443b849d7421cd6f48ba97d79..d0d1d5b6b471b79910fcc57b5c28f27a1a676dbf 100644 --- a/method_inputs/a1/EMP_PNG/r00000000/n32/meta.json +++ b/method_inputs/a1/EMP_PNG/r00000000/n32/meta.json @@ -2,7 +2,7 @@ "S": 73132, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_PNG/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_PNG/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "3e2fae27b9f16f64e8b5f582ccad0aea18bfac3562f1df044125335ba757309d", "canonical_id": "f8cee4e1de5abd85b5b031533d5b55ec3d58d96ebe91dc081a956aba32e4473f:00000000", @@ -50,7 +50,7 @@ "view.bcf": "79938a269f28b47faad95c7c4c30d1d30a206053cdcbf86b72a4e1628bafc3a1", "view.bcf.csi": "ddd148a0f24ee46bdf4af1b87b3e5c0127812acda6e5dbdacd1a678dfbc6fa57" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "ce4f38d993c173b53945a110c13af6b07ebd7f5806d3275fa71456bb51f55308", "ladder_columns": [ 39, diff --git a/method_inputs/a1/EMP_PNG/r00000001/n32/meta.json b/method_inputs/a1/EMP_PNG/r00000001/n32/meta.json index bfded948d137f1a0d4647bcf9d62956a883c854f..34432f60c4b9d6f4192942e90d74530a4d6f9768 100644 --- a/method_inputs/a1/EMP_PNG/r00000001/n32/meta.json +++ b/method_inputs/a1/EMP_PNG/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 72924, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_PNG/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_PNG/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "3e2fae27b9f16f64e8b5f582ccad0aea18bfac3562f1df044125335ba757309d", "canonical_id": "f8cee4e1de5abd85b5b031533d5b55ec3d58d96ebe91dc081a956aba32e4473f:00000001", @@ -50,7 +50,7 @@ "view.bcf": "9c54b4ecf1841a27ddcbca43d56764722cc4ef39535f9d3ac7b42b640e9c1919", "view.bcf.csi": "35c419f22c38b2140358be162222f6fc7ca14f342dfb59681d4d91875709b2f1" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "ce4f38d993c173b53945a110c13af6b07ebd7f5806d3275fa71456bb51f55308", "ladder_columns": [ 16, diff --git a/method_inputs/a1/EMP_PNG/r00000002/n32/meta.json b/method_inputs/a1/EMP_PNG/r00000002/n32/meta.json index 4e56187d4d6a169283b8a22aa15ce62c42cddcc9..2a6ac43aadbf02668bbdc9d098b3772e8056b2d8 100644 --- a/method_inputs/a1/EMP_PNG/r00000002/n32/meta.json +++ b/method_inputs/a1/EMP_PNG/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 74084, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_PNG/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_PNG/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "3e2fae27b9f16f64e8b5f582ccad0aea18bfac3562f1df044125335ba757309d", "canonical_id": "f8cee4e1de5abd85b5b031533d5b55ec3d58d96ebe91dc081a956aba32e4473f:00000002", @@ -50,7 +50,7 @@ "view.bcf": "64d9d43a259aa373a543d7722decc1446f7bb170d2892bf8ff727a0743ed4fa5", "view.bcf.csi": "f294f14b5a064b22a5f725d1bd2ebfb9336644ae5b94931ec590bc90834df238" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "ce4f38d993c173b53945a110c13af6b07ebd7f5806d3275fa71456bb51f55308", "ladder_columns": [ 23, diff --git a/method_inputs/a1/EMP_PNG/r00000003/n32/meta.json b/method_inputs/a1/EMP_PNG/r00000003/n32/meta.json index 90059e45fa297d773a141d1826c6c73eb28a0387..b259472f20eaae9d05439aedb725dc1a3b11a8a5 100644 --- a/method_inputs/a1/EMP_PNG/r00000003/n32/meta.json +++ b/method_inputs/a1/EMP_PNG/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 73385, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_PNG/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_PNG/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "3e2fae27b9f16f64e8b5f582ccad0aea18bfac3562f1df044125335ba757309d", "canonical_id": "f8cee4e1de5abd85b5b031533d5b55ec3d58d96ebe91dc081a956aba32e4473f:00000003", @@ -50,7 +50,7 @@ "view.bcf": "e841b75e3680b0e78a3da6b1e459577fca5c4c34a5525c2162b74c4235f767dd", "view.bcf.csi": "7819659244b9489a89e71729d61911a0fd2778fec80b6465bb534280c9f99f4f" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "ce4f38d993c173b53945a110c13af6b07ebd7f5806d3275fa71456bb51f55308", "ladder_columns": [ 35, diff --git a/method_inputs/a1/EMP_PNG/r00000004/n32/meta.json b/method_inputs/a1/EMP_PNG/r00000004/n32/meta.json index 4d86484fa71f16c02916c0eec708d1dae7e9913a..0fc4f1eabd5ae8468a92f8e77d31b8ac4fce5b80 100644 --- a/method_inputs/a1/EMP_PNG/r00000004/n32/meta.json +++ b/method_inputs/a1/EMP_PNG/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 73652, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_PNG/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_PNG/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "3e2fae27b9f16f64e8b5f582ccad0aea18bfac3562f1df044125335ba757309d", "canonical_id": "f8cee4e1de5abd85b5b031533d5b55ec3d58d96ebe91dc081a956aba32e4473f:00000004", @@ -50,7 +50,7 @@ "view.bcf": "c7b8177cc4854d14f7b3288e23b8d2b08b35867e06830cadc43657f165838ff4", "view.bcf.csi": "1900db424b8590c7579fc085aed97dd123de70aaa226cc0db234d0d3c6b88ea2" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "bf841062786698e05f0fe36eb995f78e28e4c8e68a38f268f055f551fa578806", "ladder_columns": [ 22, diff --git a/method_inputs/a1/EMP_PNG/r00000005/n32/meta.json b/method_inputs/a1/EMP_PNG/r00000005/n32/meta.json index 6d5b98fafea253674bdbc1f22cf025db040b104b..970f3da500f9eb6fa949800a089f1963b7d28834 100644 --- a/method_inputs/a1/EMP_PNG/r00000005/n32/meta.json +++ b/method_inputs/a1/EMP_PNG/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 73962, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_PNG/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_PNG/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "3e2fae27b9f16f64e8b5f582ccad0aea18bfac3562f1df044125335ba757309d", "canonical_id": "f8cee4e1de5abd85b5b031533d5b55ec3d58d96ebe91dc081a956aba32e4473f:00000005", @@ -50,7 +50,7 @@ "view.bcf": "855a3e986ccf065c04c03b437a73f02c65370d109a58fe6f495a197044daced1", "view.bcf.csi": "34a4407fd46f839b9045a3618c4dc4fbf171500aff4dc56cfeadb889969c03a2" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "bf841062786698e05f0fe36eb995f78e28e4c8e68a38f268f055f551fa578806", "ladder_columns": [ 8, diff --git a/method_inputs/a1/EMP_PNG/r00000006/n32/meta.json b/method_inputs/a1/EMP_PNG/r00000006/n32/meta.json index a5e7195d7b6ace0aa20c7fe025eb17e9aaa2444a..226e917d2752f01b9211d2d7d7952aad322bfd3f 100644 --- a/method_inputs/a1/EMP_PNG/r00000006/n32/meta.json +++ b/method_inputs/a1/EMP_PNG/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 73670, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_PNG/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_PNG/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "3e2fae27b9f16f64e8b5f582ccad0aea18bfac3562f1df044125335ba757309d", "canonical_id": "f8cee4e1de5abd85b5b031533d5b55ec3d58d96ebe91dc081a956aba32e4473f:00000006", @@ -50,7 +50,7 @@ "view.bcf": "a6cd4b4a22c98d2984ae515cb91666dd0a702f0974e00cbdfd8301125a4c6125", "view.bcf.csi": "c67d97b527e4d9ead16c465dba5b0a87fee7d7e8fa889c7e6f3a0d4d79d49d75" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "bf841062786698e05f0fe36eb995f78e28e4c8e68a38f268f055f551fa578806", "ladder_columns": [ 60, diff --git a/method_inputs/a1/EMP_PNG/r00000007/n32/meta.json b/method_inputs/a1/EMP_PNG/r00000007/n32/meta.json index e0e107f8dbd36c738361bac8658512cfbfd5f166..7c5b77280bdc0fe3176a165c7109a0867d36dba4 100644 --- a/method_inputs/a1/EMP_PNG/r00000007/n32/meta.json +++ b/method_inputs/a1/EMP_PNG/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 73686, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_PNG/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_PNG/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "3e2fae27b9f16f64e8b5f582ccad0aea18bfac3562f1df044125335ba757309d", "canonical_id": "f8cee4e1de5abd85b5b031533d5b55ec3d58d96ebe91dc081a956aba32e4473f:00000007", @@ -50,7 +50,7 @@ "view.bcf": "357b01f6d03dfd6a94209522fe410e0c401579c86b71c45577802702724b6fde", "view.bcf.csi": "e8df2e921c15e63ee2faaf5ecb521bcd809a62be0ebff98c9b036464623a8955" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "bf841062786698e05f0fe36eb995f78e28e4c8e68a38f268f055f551fa578806", "ladder_columns": [ 31, diff --git a/method_inputs/a1/EMP_PNG/receipts/export_51933100.json b/method_inputs/a1/EMP_PNG/receipts/export_51933100.json index 03be36fb2c607ead6deb14671398033a51e1ab54..1d53d524a913d00c2084924cdbda288e04201712 100644 --- a/method_inputs/a1/EMP_PNG/receipts/export_51933100.json +++ b/method_inputs/a1/EMP_PNG/receipts/export_51933100.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_EMP_PNG", "host": "cn113-35-l", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_PNG/receipts/identity_scan_51933100.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_PNG/receipts/identity_scan_51933100.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "1148f755d3104bbc29c0eb287d69e7572983bebc8fe69c0b96364d1680d47535" + "sha256": "36e392dc2b4c0cc30384dcda07e25dbae76473067d290c360b71f93d7ae0861e" }, "job": "51933100", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_PNG/receipts/open_audit_51933100.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_PNG/receipts/open_audit_51933100.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3e2fae27b9f16f64e8b5f582ccad0aea18bfac3562f1df044125335ba757309d", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000000/n32", "files": { "multihetsep.txt": "282a934247a0dce225ab27618abeccc7219c4ea70ff9a4da97a24fd8062b6855", "phlash_contig.npz": "28d51a2285cb38db07ece6abc78425e93a810a987d018c442ce36cfa5d767efd", @@ -54,7 +54,7 @@ "view.bcf": "79938a269f28b47faad95c7c4c30d1d30a206053cdcbf86b72a4e1628bafc3a1", "view.bcf.csi": "ddd148a0f24ee46bdf4af1b87b3e5c0127812acda6e5dbdacd1a678dfbc6fa57" }, - "meta_sha256": "7f1323f795de0a27992d7820217e106ee5a052b66eda3498ec41fc406f1f1695", + "meta_sha256": "89ec6abd007cac406b69c401e84648f88a1ce464ffe31e0319e47bb875626834", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3e2fae27b9f16f64e8b5f582ccad0aea18bfac3562f1df044125335ba757309d", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000001/n32", "files": { "multihetsep.txt": "0d81601daa897fe8e02be14c09cf941cfcfe26f8b76f88532a58634cc1820ae9", "phlash_contig.npz": "d64016b843709ac870e63698156955546f28a9b7c39b4754abeda73e31377509", @@ -93,7 +93,7 @@ "view.bcf": "9c54b4ecf1841a27ddcbca43d56764722cc4ef39535f9d3ac7b42b640e9c1919", "view.bcf.csi": "35c419f22c38b2140358be162222f6fc7ca14f342dfb59681d4d91875709b2f1" }, - "meta_sha256": "92f6be4ebaab56b1e52eaf508ad6ac629c14f59b52afdd5313fbdae8db022e86", + "meta_sha256": "3725008cdc5deb3790cd951c6865779d5600be62628a9fbf172abd233d194f1b", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3e2fae27b9f16f64e8b5f582ccad0aea18bfac3562f1df044125335ba757309d", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000002/n32", "files": { "multihetsep.txt": "54175ac764f8e9e87fa240e516c174bcd717cec6b867aff76598885195d4bd28", "phlash_contig.npz": "c657553ab5e848713298698b0b32b7c46f4ad841d36c200c92ea0c0ea0293900", @@ -132,7 +132,7 @@ "view.bcf": "64d9d43a259aa373a543d7722decc1446f7bb170d2892bf8ff727a0743ed4fa5", "view.bcf.csi": "f294f14b5a064b22a5f725d1bd2ebfb9336644ae5b94931ec590bc90834df238" }, - "meta_sha256": "2def60801a7d284ebe6c54b8de79dce8943c3c019f19256ec6d59ff520e156b5", + "meta_sha256": "9e7dce9366243286bc593fe71de5b40e5a1a3d46c2441d7e097f4fa6f3ca9e2d", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3e2fae27b9f16f64e8b5f582ccad0aea18bfac3562f1df044125335ba757309d", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000003/n32", "files": { "multihetsep.txt": "ab1bb365da26cc5f52619b01382600a2f80eb581e9a699516bd1ec27eb572db4", "phlash_contig.npz": "b766a076e1e62dc74c461c55442b3345712ba92bbfa98bc561dfb1cb7c258f38", @@ -171,7 +171,7 @@ "view.bcf": "e841b75e3680b0e78a3da6b1e459577fca5c4c34a5525c2162b74c4235f767dd", "view.bcf.csi": "7819659244b9489a89e71729d61911a0fd2778fec80b6465bb534280c9f99f4f" }, - "meta_sha256": "3f3fdd0af04112b41350be5e59600b3ac1ce439692206f82e3ce919ac0878b8d", + "meta_sha256": "78eea29ba7f1693aa3b0264a236be49a7a377851044b68f4030c9154a625211a", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3e2fae27b9f16f64e8b5f582ccad0aea18bfac3562f1df044125335ba757309d", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000004/n32", "files": { "multihetsep.txt": "4b62ceb0f5726af5ba586dacf4fa2228966ddf2d4928c9637ef61a2a699919c3", "phlash_contig.npz": "1fa1028726676809a5bc7ecacdd8961386867771a14169dc3275cb0e720a4a85", @@ -210,7 +210,7 @@ "view.bcf": "c7b8177cc4854d14f7b3288e23b8d2b08b35867e06830cadc43657f165838ff4", "view.bcf.csi": "1900db424b8590c7579fc085aed97dd123de70aaa226cc0db234d0d3c6b88ea2" }, - "meta_sha256": "49bda2cc3862243916e41485bf80f9edf73329f0cac1b17f5464155b54b1612a", + "meta_sha256": "fd45fbab0cbccb8c92e4a3dc0c8cd1c898040e8e34eec4aee858db1d38f64584", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3e2fae27b9f16f64e8b5f582ccad0aea18bfac3562f1df044125335ba757309d", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000005/n32", "files": { "multihetsep.txt": "4409e894eae056440a49048748af4cb2c59ab38fc6be66af3ea322ddf0877488", "phlash_contig.npz": "f7585da5c9029d5aecfd93b3b74da63bd567711019bdc9ebba303ecc24035ebf", @@ -249,7 +249,7 @@ "view.bcf": "855a3e986ccf065c04c03b437a73f02c65370d109a58fe6f495a197044daced1", "view.bcf.csi": "34a4407fd46f839b9045a3618c4dc4fbf171500aff4dc56cfeadb889969c03a2" }, - "meta_sha256": "34923b7e18d3fc63f6267a5f2f6cc9343d0b482fb0a17430957da2edab3ad615", + "meta_sha256": "939f238d51333ce4bb14e64317416c6186e5baede574362054fb204b92a77135", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3e2fae27b9f16f64e8b5f582ccad0aea18bfac3562f1df044125335ba757309d", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000006/n32", "files": { "multihetsep.txt": "480f6da48ec76a7d04d556e1c47f5402b2b5e01efd86bff046a887816539dcd9", "phlash_contig.npz": "40005fc75b99743ebab7cd6436030d09b63356364d1d804f2d4dfc5bcdf33ae7", @@ -288,7 +288,7 @@ "view.bcf": "a6cd4b4a22c98d2984ae515cb91666dd0a702f0974e00cbdfd8301125a4c6125", "view.bcf.csi": "c67d97b527e4d9ead16c465dba5b0a87fee7d7e8fa889c7e6f3a0d4d79d49d75" }, - "meta_sha256": "9e505682096fb7c5d1db1726497fe7f1327cbdfeaea9c55ee0bf8aac38b87118", + "meta_sha256": "f8cd4cff8a8d7ef30a86f49eba6d5a024b4d93d3f0fa040ece9e8a91be436dfa", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3e2fae27b9f16f64e8b5f582ccad0aea18bfac3562f1df044125335ba757309d", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000007/n32", "files": { "multihetsep.txt": "bfe9abd5378bac61bc547717a2268b047a65c3501884490bc4e2f11cfaaaaee1", "phlash_contig.npz": "60ea15671fb21cac2e02073932a18be665792ab69adfdf0987db7bdebed1a9ee", @@ -327,7 +327,7 @@ "view.bcf": "357b01f6d03dfd6a94209522fe410e0c401579c86b71c45577802702724b6fde", "view.bcf.csi": "e8df2e921c15e63ee2faaf5ecb521bcd809a62be0ebff98c9b036464623a8955" }, - "meta_sha256": "810325f426644105061a75337afd4011d3b8bf5d3bbe60d941bcd5b0fd99d105", + "meta_sha256": "cd777a42fb29dc73c9fc4a9e0e2118cb91db4645350d42dab04af3434683225b", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/EMP_PNG/receipts/identity_scan_51933100.json b/method_inputs/a1/EMP_PNG/receipts/identity_scan_51933100.json index 38cbd36bec7a8ff8f780d94ca37ae022d9ce657e..1722fb890ab6e2b901f40c17d66524188199e512 100644 --- a/method_inputs/a1/EMP_PNG/receipts/identity_scan_51933100.json +++ b/method_inputs/a1/EMP_PNG/receipts/identity_scan_51933100.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "f8cee4e1de5abd85b5b031533d5b55ec3d58d96ebe91dc081a956aba32e4473f" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T10:57:39Z" diff --git a/method_inputs/a1/EMP_PNG/receipts/open_audit_51933100.json b/method_inputs/a1/EMP_PNG/receipts/open_audit_51933100.json index 1380d50bd8018e37bb1756c8ce4c777c309f7d07..c842e6e9fe425b92ba50a003b0afb04d3761e8a7 100644 --- a/method_inputs/a1/EMP_PNG/receipts/open_audit_51933100.json +++ b/method_inputs/a1/EMP_PNG/receipts/open_audit_51933100.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_PNG/receipts/identity_scan_51933100.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_PNG/receipts/identity_scan_51933100.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_PNG/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_PNG/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_PNG/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_PNG/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_PNG/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_PNG/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_PNG/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000000/.n32.tmp-a3xt10_2/view.vcf" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000000/.n32.tmp-a3xt10_2/view.vcf" }, { "mode": "w", - 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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000007/n32/sfs_unfolded.npy" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000007/n32/sfs_unfolded.npy" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000007/n32/view.bcf" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000007/n32/view.bcf" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000007/v0_n32.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_PNG/r00000007/v0_n32.json" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_PNG/receipts/export_51933100.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_PNG/receipts/export_51933100.json" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/events.log" + "path": "$WORK/bench_h2h_20260915/events.log" } ], "purposes": [ diff --git a/method_inputs/a1/EMP_YRI/r00000000/n32/meta.json b/method_inputs/a1/EMP_YRI/r00000000/n32/meta.json index 29f36c6c47bcd650b9143e5fd99fad3b7229a11e..df173d65dcc89a40898d056f3938da64ddbd519b 100644 --- a/method_inputs/a1/EMP_YRI/r00000000/n32/meta.json +++ b/method_inputs/a1/EMP_YRI/r00000000/n32/meta.json @@ -2,7 +2,7 @@ "S": 171616, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "6435f78366c6ef91b5abe7035b1ea659c81da95f0b87630472252af90fc03861", "canonical_id": "06176d89482062818e1f9d64eb6708cc075767c7e482387444be4f6a71853386:00000000", @@ -50,7 +50,7 @@ "view.bcf": "aad3435b41f4bd9b3656d4de60049baa3fa3b29b61af37310b1ad43353580791", "view.bcf.csi": "ebc2692ebc929dd0bd512d627897dd1f7f1e317af989bc68b8dc462871ba5c85" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_YRI/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_YRI/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "fd7c45b61ebe700246e9ccc181f327b97dbb9dcf943e5bea175078705a8cf7f8", "ladder_columns": [ 39, diff --git a/method_inputs/a1/EMP_YRI/r00000001/n32/meta.json b/method_inputs/a1/EMP_YRI/r00000001/n32/meta.json index efdb83a129896eb1a80fe56f309f4f0d8bbae59a..212bc2c877c18224423be992d44aaec2d303ac6a 100644 --- a/method_inputs/a1/EMP_YRI/r00000001/n32/meta.json +++ b/method_inputs/a1/EMP_YRI/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 171341, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "6435f78366c6ef91b5abe7035b1ea659c81da95f0b87630472252af90fc03861", "canonical_id": "06176d89482062818e1f9d64eb6708cc075767c7e482387444be4f6a71853386:00000001", @@ -50,7 +50,7 @@ "view.bcf": "70aefbd135e91406da0fb9f1ef1f4d0e659a47d99abfad2da0870549fe1af546", "view.bcf.csi": "487900fbf3f2e8dce759e2a220d92cf05529262889272114ad8a55f239a2bddf" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_YRI/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_YRI/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "fd7c45b61ebe700246e9ccc181f327b97dbb9dcf943e5bea175078705a8cf7f8", "ladder_columns": [ 16, diff --git a/method_inputs/a1/EMP_YRI/r00000002/n32/meta.json b/method_inputs/a1/EMP_YRI/r00000002/n32/meta.json index a66923ed9fa4d91ef9f55b8fea12f7e972e0ad04..0adb45ae1e22c3c9ec0ea0e7f87ddcb9e50fc863 100644 --- a/method_inputs/a1/EMP_YRI/r00000002/n32/meta.json +++ b/method_inputs/a1/EMP_YRI/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 170496, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "6435f78366c6ef91b5abe7035b1ea659c81da95f0b87630472252af90fc03861", "canonical_id": "06176d89482062818e1f9d64eb6708cc075767c7e482387444be4f6a71853386:00000002", @@ -50,7 +50,7 @@ "view.bcf": "6b617a8e5e3fc4f67018ca06b78594ce9e306782ed0425ee8c32384e3a340765", "view.bcf.csi": "9769b837028971e4d5a9c9fb134e6bc0ca584b86ab2c2ee95db1b4ace91b11df" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_YRI/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_YRI/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "fd7c45b61ebe700246e9ccc181f327b97dbb9dcf943e5bea175078705a8cf7f8", "ladder_columns": [ 23, diff --git a/method_inputs/a1/EMP_YRI/r00000003/n32/meta.json b/method_inputs/a1/EMP_YRI/r00000003/n32/meta.json index 2cf114716c5a391d0be3b32a57988bbbdfe7f25f..b37ea1ccbe4f1e7b36b908af74787be179085d0a 100644 --- a/method_inputs/a1/EMP_YRI/r00000003/n32/meta.json +++ b/method_inputs/a1/EMP_YRI/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 172473, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "6435f78366c6ef91b5abe7035b1ea659c81da95f0b87630472252af90fc03861", "canonical_id": "06176d89482062818e1f9d64eb6708cc075767c7e482387444be4f6a71853386:00000003", @@ -50,7 +50,7 @@ "view.bcf": "180f7879d3b0b181f80cfd8a60a0e130352d96b7ecd6776f6b01afdc8f837dcc", "view.bcf.csi": "b153b8f60ff50c1c2592625398c50fa30197c834d446a2c56e6d17aae33445e2" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_YRI/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_YRI/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "fd7c45b61ebe700246e9ccc181f327b97dbb9dcf943e5bea175078705a8cf7f8", "ladder_columns": [ 35, diff --git a/method_inputs/a1/EMP_YRI/r00000004/n32/meta.json b/method_inputs/a1/EMP_YRI/r00000004/n32/meta.json index adfb2a74ab389479fdbd60b0f22ffcf727d7f568..7b467a7cd1e401a0e7f8be8b43e050b10ea00a57 100644 --- a/method_inputs/a1/EMP_YRI/r00000004/n32/meta.json +++ b/method_inputs/a1/EMP_YRI/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 168386, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "6435f78366c6ef91b5abe7035b1ea659c81da95f0b87630472252af90fc03861", "canonical_id": "06176d89482062818e1f9d64eb6708cc075767c7e482387444be4f6a71853386:00000004", @@ -50,7 +50,7 @@ "view.bcf": "a53dbd8e326a389020516cee786ef101af96f64fda07c99bcf156281190fede0", "view.bcf.csi": "97a0f3da6b2ce2010cba1c14334e149d258e6c79b716722a17c013bfeb7d355a" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_YRI/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_YRI/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "7272003d33a71ab5f79455fa487d7ae3595281f9e797afaadda62a4e92d9190f", "ladder_columns": [ 22, diff --git a/method_inputs/a1/EMP_YRI/r00000005/n32/meta.json b/method_inputs/a1/EMP_YRI/r00000005/n32/meta.json index e1d1cfb7dc17ebdf41038b17784b992c223f71e9..8e101abfb9b4a2e9c1497ab0be87f03cafa94f83 100644 --- a/method_inputs/a1/EMP_YRI/r00000005/n32/meta.json +++ b/method_inputs/a1/EMP_YRI/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 169299, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "6435f78366c6ef91b5abe7035b1ea659c81da95f0b87630472252af90fc03861", "canonical_id": "06176d89482062818e1f9d64eb6708cc075767c7e482387444be4f6a71853386:00000005", @@ -50,7 +50,7 @@ "view.bcf": "b713be8b7f0b9d41f86b35f25c767292317c8a64ecdc424914fb2b8d874ce00b", "view.bcf.csi": "dc939e62146ad34092dee3efc8b9e54b8aa7a68af5b6be9a5c196e1e52f0a384" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_YRI/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_YRI/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "7272003d33a71ab5f79455fa487d7ae3595281f9e797afaadda62a4e92d9190f", "ladder_columns": [ 8, diff --git a/method_inputs/a1/EMP_YRI/r00000006/n32/meta.json b/method_inputs/a1/EMP_YRI/r00000006/n32/meta.json index 375b1631e5ccb480c8845a77ccd651a94f08dd62..b720818da095c2ca51b91959fb1f73722b4bda36 100644 --- a/method_inputs/a1/EMP_YRI/r00000006/n32/meta.json +++ b/method_inputs/a1/EMP_YRI/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 168911, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "6435f78366c6ef91b5abe7035b1ea659c81da95f0b87630472252af90fc03861", "canonical_id": "06176d89482062818e1f9d64eb6708cc075767c7e482387444be4f6a71853386:00000006", @@ -50,7 +50,7 @@ "view.bcf": "98a75b227d5d6b5213e8876810e3588cf0748f6d21e53a4ac9dfbcb839322739", "view.bcf.csi": "ad1a28093b2f4bab24682f4b84411d2a4c0c2546054382a978f25201c8bf3e91" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_YRI/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_YRI/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "7272003d33a71ab5f79455fa487d7ae3595281f9e797afaadda62a4e92d9190f", "ladder_columns": [ 60, diff --git a/method_inputs/a1/EMP_YRI/r00000007/n32/meta.json b/method_inputs/a1/EMP_YRI/r00000007/n32/meta.json index 312ac31bb95afe983f311cc24b9e3b56fe088c31..86a9e8774371f8ea2a0bd9328cadf5aa69472fa3 100644 --- a/method_inputs/a1/EMP_YRI/r00000007/n32/meta.json +++ b/method_inputs/a1/EMP_YRI/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 170621, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "6435f78366c6ef91b5abe7035b1ea659c81da95f0b87630472252af90fc03861", "canonical_id": "06176d89482062818e1f9d64eb6708cc075767c7e482387444be4f6a71853386:00000007", @@ -50,7 +50,7 @@ "view.bcf": "fa279a61729d12d8c36bbc83650dca26830944b8ac2716d58c35edbca35c26a0", "view.bcf.csi": "80aa6560ef34b62c805f73dfc54e25524f63e5b5b0a1434c88531da517bfba3d" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_YRI/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_YRI/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "7272003d33a71ab5f79455fa487d7ae3595281f9e797afaadda62a4e92d9190f", "ladder_columns": [ 31, diff --git a/method_inputs/a1/EMP_YRI/receipts/export_51933091.json b/method_inputs/a1/EMP_YRI/receipts/export_51933091.json index e9c992b945e1569ccfa931a2acf6faf596fcca8f..f60033e7744c651610d96c9eeee1029aa512809b 100644 --- a/method_inputs/a1/EMP_YRI/receipts/export_51933091.json +++ b/method_inputs/a1/EMP_YRI/receipts/export_51933091.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_EMP_YRI", "host": "cn113-35-l", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_YRI/receipts/identity_scan_51933091.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_YRI/receipts/identity_scan_51933091.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "7369433674960e3e445b695c5d7d1aa2f4f3c22645e73c10a1a801f7a9bfe196" + "sha256": "ff4eddc74843a60b8c34e1c6f049f1a78b9c87b12b4e6cc6c39209c37ef6e1cc" }, "job": "51933091", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_YRI/receipts/open_audit_51933091.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_YRI/receipts/open_audit_51933091.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6435f78366c6ef91b5abe7035b1ea659c81da95f0b87630472252af90fc03861", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_YRI/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_YRI/r00000000/n32", "files": { "multihetsep.txt": "bc3a7b44a9a73260ffc23e436c7869fb9882cc35d7472c62e6b369d7e68568d1", "phlash_contig.npz": "a30d817b51452c7c83dabee4af6d53d018122f9f09ae31481eaa437352b7827f", @@ -54,7 +54,7 @@ "view.bcf": "aad3435b41f4bd9b3656d4de60049baa3fa3b29b61af37310b1ad43353580791", "view.bcf.csi": "ebc2692ebc929dd0bd512d627897dd1f7f1e317af989bc68b8dc462871ba5c85" }, - "meta_sha256": "ce018901b39a813dcb894035fe650b175022abeb1d7273c245b1e62d3a61bd04", + "meta_sha256": "bcecf397ff079bdcad2d7fb31b30687d2ea6661f2ee91cad159ae0818f8553c4", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6435f78366c6ef91b5abe7035b1ea659c81da95f0b87630472252af90fc03861", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_YRI/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_YRI/r00000001/n32", "files": { "multihetsep.txt": "2d11ecfb994de6957f16a363d09d56121f860f5573cc699ea3a85018f6fb0ea7", "phlash_contig.npz": "09c22b858e46ed5fff3e0551b1db3a9fdf62f03ca9a6dcbb3e227fec79c6c20f", @@ -93,7 +93,7 @@ "view.bcf": "70aefbd135e91406da0fb9f1ef1f4d0e659a47d99abfad2da0870549fe1af546", "view.bcf.csi": "487900fbf3f2e8dce759e2a220d92cf05529262889272114ad8a55f239a2bddf" }, - "meta_sha256": "2bb80036ea6b1aa1050dacf959a4ce15e539d5d25bdb74b7dec09b6d78e907f7", + "meta_sha256": "f299db0296e08fcd19e95e7e85d7ac369932d624bd89edc2171395fd968baefa", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6435f78366c6ef91b5abe7035b1ea659c81da95f0b87630472252af90fc03861", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_YRI/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_YRI/r00000002/n32", "files": { "multihetsep.txt": "8d89f60312c444ccc9f2f4360545c5985e3e44c70565d02e8f7dd8e9ed017b4a", "phlash_contig.npz": "d7a62c14acf4174b9fd02188b8db5276c355816d7b385c79fd79af9e0f5d32db", @@ -132,7 +132,7 @@ "view.bcf": "6b617a8e5e3fc4f67018ca06b78594ce9e306782ed0425ee8c32384e3a340765", "view.bcf.csi": "9769b837028971e4d5a9c9fb134e6bc0ca584b86ab2c2ee95db1b4ace91b11df" }, - "meta_sha256": "27b457a5bcb54d834c57206c524e46ed0b2f70e4ced3928e9b00456ee9f9bcc4", + "meta_sha256": "74818aa03d09018c959b983deb8f50865d8256e8302633e6f721a3bc4e9e2288", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6435f78366c6ef91b5abe7035b1ea659c81da95f0b87630472252af90fc03861", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_YRI/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_YRI/r00000003/n32", "files": { "multihetsep.txt": "316f8f6e74bfd14c63adcf075f5a497ee17129ab34792683a80ebe3ef735d5b8", "phlash_contig.npz": "2c0bdbb0c6c589528508f8ff934ee603176b22239d27f8d16177d858c3aed99c", @@ -171,7 +171,7 @@ "view.bcf": "180f7879d3b0b181f80cfd8a60a0e130352d96b7ecd6776f6b01afdc8f837dcc", "view.bcf.csi": "b153b8f60ff50c1c2592625398c50fa30197c834d446a2c56e6d17aae33445e2" }, - "meta_sha256": "391dea46df11e3177905ce74a3224b6de2cd8d16dc21fd7d48a9ff720492a13f", + "meta_sha256": "4e7f20aced192b78b76c3994020c27daaa5560e3931a1d1585178f392f1cbf8a", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6435f78366c6ef91b5abe7035b1ea659c81da95f0b87630472252af90fc03861", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_YRI/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_YRI/r00000004/n32", "files": { "multihetsep.txt": "e814906fc5491ce8fe9173c6dfe28a0c118928738151b16518c387d22711aa20", "phlash_contig.npz": "02838be5a7ee942b2c638cb05176e07c1aa455f2fee65419c8ed97377ec217dd", @@ -210,7 +210,7 @@ "view.bcf": "a53dbd8e326a389020516cee786ef101af96f64fda07c99bcf156281190fede0", "view.bcf.csi": "97a0f3da6b2ce2010cba1c14334e149d258e6c79b716722a17c013bfeb7d355a" }, - "meta_sha256": "31f569db85e65b1f6cd1b27375e7c42042a75b7472ecd1e99496586d3bf8e23d", + "meta_sha256": "0c20b882c4980deb11b38db83eed756afe0796c1a7ba1e72df38246c0bc3ef4f", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6435f78366c6ef91b5abe7035b1ea659c81da95f0b87630472252af90fc03861", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_YRI/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_YRI/r00000005/n32", "files": { "multihetsep.txt": "f61b93e3e6e85c69fd0569bae683c6c119a81bbbe6c25cb42e87afc132704398", "phlash_contig.npz": "6f51e27feef5a7cddc9ab8405fb6c4b21d5e3b303cc0a9fb3b9a6ee9e0813945", @@ -249,7 +249,7 @@ "view.bcf": "b713be8b7f0b9d41f86b35f25c767292317c8a64ecdc424914fb2b8d874ce00b", "view.bcf.csi": "dc939e62146ad34092dee3efc8b9e54b8aa7a68af5b6be9a5c196e1e52f0a384" }, - "meta_sha256": "9195a3205655e816d5d1f7df108066f3dfcfac6d4d9da05486960e8429f357b9", + "meta_sha256": "8e146add1ec6b932510d5fee62a862ab0eebbfb195d38d9eed4d70b30f2c319f", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6435f78366c6ef91b5abe7035b1ea659c81da95f0b87630472252af90fc03861", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_YRI/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_YRI/r00000006/n32", "files": { "multihetsep.txt": "a61cf3f55a0bc32627d529dd6f4739341b658780b1b1dc83ce66a8971c8159d2", "phlash_contig.npz": "c22c2d03f4ad891f89fd960400dbcc7ff2956dd68282fe5d12ce6cd7870decd8", @@ -288,7 +288,7 @@ "view.bcf": "98a75b227d5d6b5213e8876810e3588cf0748f6d21e53a4ac9dfbcb839322739", "view.bcf.csi": "ad1a28093b2f4bab24682f4b84411d2a4c0c2546054382a978f25201c8bf3e91" }, - "meta_sha256": "3b68495f82c795a901eaa9873a97d34d7737648b85de0516a5696810128d0b10", + "meta_sha256": "aed8e4bb69a284b2f01ed6532e519da27aa6b36c6c1f1e0c7b0fdaec571e3cb0", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6435f78366c6ef91b5abe7035b1ea659c81da95f0b87630472252af90fc03861", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_YRI/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_YRI/r00000007/n32", "files": { "multihetsep.txt": "0938540c9a1efe1f2a9b2045a5b65102ad4148f8138d89e3a4e3d5aa73922636", "phlash_contig.npz": "ed81d34814ac0fc97acf4451d649318054247c66bedb44701f5831b238b62221", @@ -327,7 +327,7 @@ "view.bcf": "fa279a61729d12d8c36bbc83650dca26830944b8ac2716d58c35edbca35c26a0", "view.bcf.csi": "80aa6560ef34b62c805f73dfc54e25524f63e5b5b0a1434c88531da517bfba3d" }, - "meta_sha256": "e334429f38c6d2195a797d57fff366722a0cb510fbed7d585b5e1dadae28423f", + "meta_sha256": "9298cf1d47c60e69dfd1ce6bc3cfec7a5a742a92359e8ef922afcfb1485c1b44", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/EMP_YRI/receipts/identity_scan_51933091.json b/method_inputs/a1/EMP_YRI/receipts/identity_scan_51933091.json index 400aca089de442009f24a938444e337ac64be35f..276b68dea9739ca37e67a84f55589e99eb7e4868 100644 --- a/method_inputs/a1/EMP_YRI/receipts/identity_scan_51933091.json +++ b/method_inputs/a1/EMP_YRI/receipts/identity_scan_51933091.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "06176d89482062818e1f9d64eb6708cc075767c7e482387444be4f6a71853386" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T10:57:21Z" diff --git a/method_inputs/a1/EMP_YRI/receipts/open_audit_51933091.json b/method_inputs/a1/EMP_YRI/receipts/open_audit_51933091.json index c9a3e07464641c8349e1a2a0a534e8d6413cb84d..28603139eeca2f5944777f18896cbecdfceb3913 100644 --- a/method_inputs/a1/EMP_YRI/receipts/open_audit_51933091.json +++ b/method_inputs/a1/EMP_YRI/receipts/open_audit_51933091.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_YRI/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_YRI/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_YRI/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_YRI/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_EMP_YRI/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_EMP_YRI/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_YRI/receipts/identity_scan_51933091.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_YRI/receipts/identity_scan_51933091.json" }, { "mode": "r", - 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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_EMP_YRI/receipts/export_51933091.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_EMP_YRI/receipts/export_51933091.json" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/events.log" + "path": "$WORK/bench_h2h_20260915/events.log" } ], "purposes": [ diff --git a/method_inputs/a1/GROW_X100_300/r00000000/n32/meta.json b/method_inputs/a1/GROW_X100_300/r00000000/n32/meta.json index 3dd7e2dc044fd76bb5c25c986db6b6c5f2b9ebcf..6d3c8a74665eefd28ce109081f86b1b7377f3f72 100644 --- a/method_inputs/a1/GROW_X100_300/r00000000/n32/meta.json +++ b/method_inputs/a1/GROW_X100_300/r00000000/n32/meta.json @@ -2,7 +2,7 @@ "S": 77860, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "a4283ea7fb86aa3a44b55876bf9805d70a4e836b7a9b11aef9e0191b93235b1d", "canonical_id": "087af84bbde80b0b0c44ece61f7655fbb126be150dfbe2de0b7b2f8d0577489c:00000000", @@ -50,7 +50,7 @@ "view.bcf": "9016c0b0cca3393e60b3b62f9f48c084caa03426bab09f814c7ac1024827ddc4", "view.bcf.csi": "4087866de7556571277ccfa7d207f4d6b138316e4e5c4cdb387b2c79ae64f52e" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "f5f32a5f159cbddfee9439b7b805e6f53b98698636bff205afe98d4e8edcd16b", "ladder_columns": [ 39, diff --git a/method_inputs/a1/GROW_X100_300/r00000001/n32/meta.json b/method_inputs/a1/GROW_X100_300/r00000001/n32/meta.json index 084fc99d9caca4ea7180fccfbe664dd99e0d2866..a07adcd83d0ad0e6b0d0e4e25052a6ee7a94daa0 100644 --- a/method_inputs/a1/GROW_X100_300/r00000001/n32/meta.json +++ b/method_inputs/a1/GROW_X100_300/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 76363, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "a4283ea7fb86aa3a44b55876bf9805d70a4e836b7a9b11aef9e0191b93235b1d", "canonical_id": "087af84bbde80b0b0c44ece61f7655fbb126be150dfbe2de0b7b2f8d0577489c:00000001", @@ -50,7 +50,7 @@ "view.bcf": "3f68a376186de7801eb3983d31e6c950080ccd7e534ca295b0bdb186cd6e2eb8", "view.bcf.csi": "8defc7d6c5d5bdc20b50b4193b78b1b674b2cec6e156e1175e711ef0d50a5652" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "f5f32a5f159cbddfee9439b7b805e6f53b98698636bff205afe98d4e8edcd16b", "ladder_columns": [ 16, diff --git a/method_inputs/a1/GROW_X100_300/r00000002/n32/meta.json b/method_inputs/a1/GROW_X100_300/r00000002/n32/meta.json index 4182b77223d98cdcd60655a1cec22ac5c4803042..4a7c847444d0b83972bcf95e2dd7125894c00692 100644 --- a/method_inputs/a1/GROW_X100_300/r00000002/n32/meta.json +++ b/method_inputs/a1/GROW_X100_300/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 75658, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "a4283ea7fb86aa3a44b55876bf9805d70a4e836b7a9b11aef9e0191b93235b1d", "canonical_id": "087af84bbde80b0b0c44ece61f7655fbb126be150dfbe2de0b7b2f8d0577489c:00000002", @@ -50,7 +50,7 @@ "view.bcf": "a6634ac3fc71855ce08c1dd1530d32627105368ed608d728154fae5ab9111e63", "view.bcf.csi": "d833cee72aa8e2b1553a8fc036f5b818aca0b346c01fe5174905ef77c32aba48" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "f5f32a5f159cbddfee9439b7b805e6f53b98698636bff205afe98d4e8edcd16b", "ladder_columns": [ 23, diff --git a/method_inputs/a1/GROW_X100_300/r00000003/n32/meta.json b/method_inputs/a1/GROW_X100_300/r00000003/n32/meta.json index 72350d837a7a83c140b6cfe69b8b51926b80fb54..833258c880ce0251d282c5706d81102864d716e0 100644 --- a/method_inputs/a1/GROW_X100_300/r00000003/n32/meta.json +++ b/method_inputs/a1/GROW_X100_300/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 76290, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "a4283ea7fb86aa3a44b55876bf9805d70a4e836b7a9b11aef9e0191b93235b1d", "canonical_id": "087af84bbde80b0b0c44ece61f7655fbb126be150dfbe2de0b7b2f8d0577489c:00000003", @@ -50,7 +50,7 @@ "view.bcf": "c3f3567e7863854c92440534d7762fbdba3b70a6c3d1a4a4993a4135f239aaf7", "view.bcf.csi": "52719498c33919ac8fc871de82d13f7979a2feb74702d92961cb8555eb376063" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "f5f32a5f159cbddfee9439b7b805e6f53b98698636bff205afe98d4e8edcd16b", "ladder_columns": [ 35, diff --git a/method_inputs/a1/GROW_X100_300/r00000004/n32/meta.json b/method_inputs/a1/GROW_X100_300/r00000004/n32/meta.json index c5d648328e18f834f3b34cc58d24025424e533b1..e266c8e42a9677f514167596e606f516952b7875 100644 --- a/method_inputs/a1/GROW_X100_300/r00000004/n32/meta.json +++ b/method_inputs/a1/GROW_X100_300/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 76767, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "a4283ea7fb86aa3a44b55876bf9805d70a4e836b7a9b11aef9e0191b93235b1d", "canonical_id": "087af84bbde80b0b0c44ece61f7655fbb126be150dfbe2de0b7b2f8d0577489c:00000004", @@ -50,7 +50,7 @@ "view.bcf": "102d1e6154d0ae2cb8cc526675dc7bfda10ea0cd844c4ac4ee9a094c74d9ec38", "view.bcf.csi": "4ffeda82a3e7fd3e1baee89b13e1bca7c91d7a38d5ab8faa72ac8ebe3d42ba34" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "d5a048d79585813b3763b68f3a1fb690fea816226bf27dbb0fa19518231b50ea", "ladder_columns": [ 22, diff --git a/method_inputs/a1/GROW_X100_300/r00000005/n32/meta.json b/method_inputs/a1/GROW_X100_300/r00000005/n32/meta.json index 0eb1ac462f57cdb4004d1ab76a3f4d1a2815f246..de5438c1699efed515af455d76b1d89860021940 100644 --- a/method_inputs/a1/GROW_X100_300/r00000005/n32/meta.json +++ b/method_inputs/a1/GROW_X100_300/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 77079, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "a4283ea7fb86aa3a44b55876bf9805d70a4e836b7a9b11aef9e0191b93235b1d", "canonical_id": "087af84bbde80b0b0c44ece61f7655fbb126be150dfbe2de0b7b2f8d0577489c:00000005", @@ -50,7 +50,7 @@ "view.bcf": "7d27216932202607c38c55e957909a8d29598147814a5ab7329f61008dc91d38", "view.bcf.csi": "962149a64d239440d35fb89c23125b198c141ea7ccd792ff7abd5796d6fbf826" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "d5a048d79585813b3763b68f3a1fb690fea816226bf27dbb0fa19518231b50ea", "ladder_columns": [ 8, diff --git a/method_inputs/a1/GROW_X100_300/r00000006/n32/meta.json b/method_inputs/a1/GROW_X100_300/r00000006/n32/meta.json index a04e16cc9f4109c19d89f7c9ac63cb46a0064c71..9928daf6a982b11215691a3d0de5904d1379863f 100644 --- a/method_inputs/a1/GROW_X100_300/r00000006/n32/meta.json +++ b/method_inputs/a1/GROW_X100_300/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 75675, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "a4283ea7fb86aa3a44b55876bf9805d70a4e836b7a9b11aef9e0191b93235b1d", "canonical_id": "087af84bbde80b0b0c44ece61f7655fbb126be150dfbe2de0b7b2f8d0577489c:00000006", @@ -50,7 +50,7 @@ "view.bcf": "d3d26d0919e2eb79a0cdab458e56d47fb244184d8893d72b163d69490e1b13b4", "view.bcf.csi": "ab6bafea9be584834aba482d359e834ec8b51e072ad8907b019bd8539f0836fa" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "d5a048d79585813b3763b68f3a1fb690fea816226bf27dbb0fa19518231b50ea", "ladder_columns": [ 60, diff --git a/method_inputs/a1/GROW_X100_300/r00000007/n32/meta.json b/method_inputs/a1/GROW_X100_300/r00000007/n32/meta.json index 623a77b0eeeea539d50fb885beeb0912ec79b73f..80cd0f0b89e9b50092d7f48f057a50fb604baf89 100644 --- a/method_inputs/a1/GROW_X100_300/r00000007/n32/meta.json +++ b/method_inputs/a1/GROW_X100_300/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 76200, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "a4283ea7fb86aa3a44b55876bf9805d70a4e836b7a9b11aef9e0191b93235b1d", "canonical_id": "087af84bbde80b0b0c44ece61f7655fbb126be150dfbe2de0b7b2f8d0577489c:00000007", @@ -50,7 +50,7 @@ "view.bcf": "73a9b55728b304552d55b535cb4481f99e1a5fcd7971f6dbff3d02e00978c948", "view.bcf.csi": "78e03e2cc58d61a4b86364ec9cd18fa80f5f8b5405d3effbfa46636e4b106547" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "d5a048d79585813b3763b68f3a1fb690fea816226bf27dbb0fa19518231b50ea", "ladder_columns": [ 31, diff --git a/method_inputs/a1/GROW_X100_300/receipts/export_51933106.json b/method_inputs/a1/GROW_X100_300/receipts/export_51933106.json index 7d417548213b725986b62d2bd6dcea0463eae64e..d843a8f600388bc8b27b0e415be7493e9f5bd694 100644 --- a/method_inputs/a1/GROW_X100_300/receipts/export_51933106.json +++ b/method_inputs/a1/GROW_X100_300/receipts/export_51933106.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_GROW_X100_300", "host": "cn113-35-l", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_GROW_X100_300/receipts/identity_scan_51933106.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_GROW_X100_300/receipts/identity_scan_51933106.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "055a8bf03e511a5d3451eb1280d9350511022f00e57d146005bf86ce4ffc890c" + "sha256": "f03395d67a81fd8ff5283c542b83bb9eef50456088ab390881fa9a18046f2748" }, "job": "51933106", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_GROW_X100_300/receipts/open_audit_51933106.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_GROW_X100_300/receipts/open_audit_51933106.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "a4283ea7fb86aa3a44b55876bf9805d70a4e836b7a9b11aef9e0191b93235b1d", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000000/n32", "files": { "multihetsep.txt": "1ab20b9e4c560cb317bd22739a139a02de92cbdc6c652ea3414aaa11a7e507e3", "phlash_contig.npz": "a37453622eaa4a35c5e7b76ce3fd40b8ceade943274c87a986eeec12ac232842", @@ -54,7 +54,7 @@ "view.bcf": "9016c0b0cca3393e60b3b62f9f48c084caa03426bab09f814c7ac1024827ddc4", "view.bcf.csi": "4087866de7556571277ccfa7d207f4d6b138316e4e5c4cdb387b2c79ae64f52e" }, - "meta_sha256": "ae7480f81dd96d840ac87412e8fcb1325a2899fdfcd34c75ef1d01e50611ee4b", + "meta_sha256": "e8f7736cbe1bb205e24467d97c63ff55b42658387cf1d47f1ee0ddc06916b68e", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "a4283ea7fb86aa3a44b55876bf9805d70a4e836b7a9b11aef9e0191b93235b1d", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000001/n32", "files": { "multihetsep.txt": "1268e423dbc9f62e7bac3a8bb51aa2a5b97bba29b0c152ff7a36d591888b2aef", "phlash_contig.npz": "a8e23e8cadb4c8c37b9b38815690d1d22e8d5958b381c753b00f1959d5784141", @@ -93,7 +93,7 @@ "view.bcf": "3f68a376186de7801eb3983d31e6c950080ccd7e534ca295b0bdb186cd6e2eb8", "view.bcf.csi": "8defc7d6c5d5bdc20b50b4193b78b1b674b2cec6e156e1175e711ef0d50a5652" }, - "meta_sha256": "34703a87bb515bd4b99c4f1fb83238511382275f9aa6ca6b1407dcf586089afe", + "meta_sha256": "08ed687492bed5f7dd315964a8faaa241dcc0aa537b3a7e390d1eaf5c8b09ecd", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "a4283ea7fb86aa3a44b55876bf9805d70a4e836b7a9b11aef9e0191b93235b1d", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000002/n32", "files": { "multihetsep.txt": "778e0f7575476493431b94c7772b3bbd899fd893c65c6ae072ace9a3cd71a21a", "phlash_contig.npz": "520f17ea8855ef7e23e45c3356486ba31753e73adfbf84ae298420dd0afdd1ee", @@ -132,7 +132,7 @@ "view.bcf": "a6634ac3fc71855ce08c1dd1530d32627105368ed608d728154fae5ab9111e63", "view.bcf.csi": "d833cee72aa8e2b1553a8fc036f5b818aca0b346c01fe5174905ef77c32aba48" }, - "meta_sha256": "9254fdef91b05177b49dcc340a9d83cc4b0324a6d80afa56e8fec313a6bf954a", + "meta_sha256": "1847e76589dd8e6dd6819bf7a1cd99387cdc09b9e6ac998509ce9da0f7849552", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "a4283ea7fb86aa3a44b55876bf9805d70a4e836b7a9b11aef9e0191b93235b1d", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000003/n32", "files": { "multihetsep.txt": "616f8187f8faa9074689f0ebda9c99c2df87d60ffcb61181ad58c6371d0c18e2", "phlash_contig.npz": "0169b5d8c242535c7fdadbd892389000c7cbfdb523c99e353896835c74f0a7e4", @@ -171,7 +171,7 @@ "view.bcf": "c3f3567e7863854c92440534d7762fbdba3b70a6c3d1a4a4993a4135f239aaf7", "view.bcf.csi": "52719498c33919ac8fc871de82d13f7979a2feb74702d92961cb8555eb376063" }, - "meta_sha256": "cc9a92fb3c9fa72f8ed777a6f3015fe8c0ca9a5a027812d60a71ab8162eca275", + "meta_sha256": "bcfc20678c291de1c12eb14322e5c87278bdb89e595edaf6868464b8bb10017a", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "a4283ea7fb86aa3a44b55876bf9805d70a4e836b7a9b11aef9e0191b93235b1d", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000004/n32", "files": { "multihetsep.txt": "88c8c4d2337594134e0df63de18459de77d5cbd5be186e8050e1755145642c24", "phlash_contig.npz": "f37e038a3da0f747296defff047fb967b23d5ee009319b8564b2d2f320f9b506", @@ -210,7 +210,7 @@ "view.bcf": "102d1e6154d0ae2cb8cc526675dc7bfda10ea0cd844c4ac4ee9a094c74d9ec38", "view.bcf.csi": "4ffeda82a3e7fd3e1baee89b13e1bca7c91d7a38d5ab8faa72ac8ebe3d42ba34" }, - "meta_sha256": "2d63e2ea5af38f153eece33ebec868f38f32f56b6dade43200bbef31f565f05f", + "meta_sha256": "2f415e318be28a16e4b16f35cedeae19671b1a6528c1c2266caf4a20a9773c0e", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "a4283ea7fb86aa3a44b55876bf9805d70a4e836b7a9b11aef9e0191b93235b1d", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000005/n32", "files": { "multihetsep.txt": "4951d2f6f4776a9bf562c4716da0111272250958696afc3a6a3aef7fd126564d", "phlash_contig.npz": "e4d37169d76b1a58dfab1371b7c25987f5af92e2860c5da53a953e8df539daa4", @@ -249,7 +249,7 @@ "view.bcf": "7d27216932202607c38c55e957909a8d29598147814a5ab7329f61008dc91d38", "view.bcf.csi": "962149a64d239440d35fb89c23125b198c141ea7ccd792ff7abd5796d6fbf826" }, - "meta_sha256": "f1ce1289f0c8f1ff9d88899a11bd715070fb1df3502f9b18f986d1a14ff55448", + "meta_sha256": "b975b879e9eaae74375d142b6e14ae04e6733f066061f537becd317df3b80e21", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "a4283ea7fb86aa3a44b55876bf9805d70a4e836b7a9b11aef9e0191b93235b1d", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000006/n32", "files": { "multihetsep.txt": "d7b275cf5d2b3d0c20c8ff3d05d9c818d81e86daab727fec0e278390f3081626", "phlash_contig.npz": "303f40690d628c712c40b1535b738fdee31d5f38e3f570633a1dba4d99914d72", @@ -288,7 +288,7 @@ "view.bcf": "d3d26d0919e2eb79a0cdab458e56d47fb244184d8893d72b163d69490e1b13b4", "view.bcf.csi": "ab6bafea9be584834aba482d359e834ec8b51e072ad8907b019bd8539f0836fa" }, - "meta_sha256": "a8c73bf86cefd04864ad5a9481e06d2263bcd97970027edda5430df619d4de87", + "meta_sha256": "0608f95e02f1acdfb8a00faf5916f88733363707962e443ef47a9994055dfce5", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "a4283ea7fb86aa3a44b55876bf9805d70a4e836b7a9b11aef9e0191b93235b1d", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000007/n32", "files": { "multihetsep.txt": "bf91ff238b8f6ed4e27b99fc854a2f8e3525452c6c4e92577f64ddb982c0e55e", "phlash_contig.npz": "ce4a0aebb9b96eb08229c2e6821128343239f1abfdaf1b7f30fdb72e66d4cffd", @@ -327,7 +327,7 @@ "view.bcf": "73a9b55728b304552d55b535cb4481f99e1a5fcd7971f6dbff3d02e00978c948", "view.bcf.csi": "78e03e2cc58d61a4b86364ec9cd18fa80f5f8b5405d3effbfa46636e4b106547" }, - "meta_sha256": "8fb99163b91dc207d55a4434c370787540252c4727f8df6e05594bbfc1e25cd8", + "meta_sha256": "c43e92589d2b7f3a3de127e4070f1de1bf142c29b453710e31defeb975d87da7", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/GROW_X100_300/receipts/identity_scan_51933106.json b/method_inputs/a1/GROW_X100_300/receipts/identity_scan_51933106.json index 5942517d843d2d0dfa57fb46f207fcb07007bbda..29e079d4b99b942cb7718d706a2fe4c35ea78197 100644 --- a/method_inputs/a1/GROW_X100_300/receipts/identity_scan_51933106.json +++ b/method_inputs/a1/GROW_X100_300/receipts/identity_scan_51933106.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "087af84bbde80b0b0c44ece61f7655fbb126be150dfbe2de0b7b2f8d0577489c" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T10:58:01Z" diff --git a/method_inputs/a1/GROW_X100_300/receipts/open_audit_51933106.json b/method_inputs/a1/GROW_X100_300/receipts/open_audit_51933106.json index 5583ef7d830c8660ca234172289f740bd3112d55..f6b10a1a4041c8ce2fd35d1373d5cc579f34d211 100644 --- a/method_inputs/a1/GROW_X100_300/receipts/open_audit_51933106.json +++ b/method_inputs/a1/GROW_X100_300/receipts/open_audit_51933106.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_GROW_X100_300/receipts/identity_scan_51933106.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_GROW_X100_300/receipts/identity_scan_51933106.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_GROW_X100_300/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_GROW_X100_300/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_GROW_X100_300/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000000/.n32.tmp-8wacckbt/view.vcf" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000000/.n32.tmp-8wacckbt/view.vcf" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000000/.n32.tmp-8wacckbt/phlash_contig.npz" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000000/.n32.tmp-8wacckbt/phlash_contig.npz" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000000/.n32.tmp-8wacckbt/sfs_unfolded.npy" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000000/.n32.tmp-8wacckbt/sfs_unfolded.npy" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000000/.n32.tmp-8wacckbt/multihetsep.txt" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000000/.n32.tmp-8wacckbt/multihetsep.txt" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000000/.n32.tmp-8wacckbt/view.bcf" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000000/.n32.tmp-8wacckbt/view.bcf" }, { "mode": "r", - 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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000007/v0_n32.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_GROW_X100_300/r00000007/v0_n32.json" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_GROW_X100_300/receipts/export_51933106.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_GROW_X100_300/receipts/export_51933106.json" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/events.log" + "path": "$WORK/bench_h2h_20260915/events.log" } ], "purposes": [ diff --git a/method_inputs/a1/OOA_EAS/r00000000/n32/meta.json b/method_inputs/a1/OOA_EAS/r00000000/n32/meta.json index 574e53d6063db185f8ea3982d2d7515b8501513e..a0478fad7088755abe1a22ae7a87c17197fbbe3a 100644 --- a/method_inputs/a1/OOA_EAS/r00000000/n32/meta.json +++ b/method_inputs/a1/OOA_EAS/r00000000/n32/meta.json @@ -2,7 +2,7 @@ "S": 28461, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_OOA_EAS/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_OOA_EAS/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "724e3d7248a8f35beabf96c9a23b0c2745d88e106b3a06155ae8df5614d6b13d", "canonical_id": "bd8f09a5b59883c5cb654a228fd28aaafd2bdd02123281c0e8ef2bc677c747a2:00000000", @@ -50,7 +50,7 @@ "view.bcf": "30b5d30636745c72fbb4f71138aa31f7b86e0b7baf2fbcfaa05b8603ab821a6b", "view.bcf.csi": "36204571af599d3946b12accd3825d30d92c09c013d82cd28571db6999d3866d" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "a25ca39d82c8483e7fce8a493693ea290ab312a27a53c6f660dbd589d26be361", "ladder_columns": [ 39, diff --git a/method_inputs/a1/OOA_EAS/r00000001/n32/meta.json b/method_inputs/a1/OOA_EAS/r00000001/n32/meta.json index 30722c17deb1b2f67344712d72dd808a3ffb8b66..a8473424db257df4e34dd7a9b4ef0494c95246c7 100644 --- a/method_inputs/a1/OOA_EAS/r00000001/n32/meta.json +++ b/method_inputs/a1/OOA_EAS/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 27850, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_OOA_EAS/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_OOA_EAS/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "724e3d7248a8f35beabf96c9a23b0c2745d88e106b3a06155ae8df5614d6b13d", "canonical_id": "bd8f09a5b59883c5cb654a228fd28aaafd2bdd02123281c0e8ef2bc677c747a2:00000001", @@ -50,7 +50,7 @@ "view.bcf": "741229dfcddabeb563333432db8f56a87bbe1142b68673414e0a6f5c88df9301", "view.bcf.csi": "f0bf9de614683e7f9c87636b2fbff6658e485fd421d8a19f2e3db75fc9f84968" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "a25ca39d82c8483e7fce8a493693ea290ab312a27a53c6f660dbd589d26be361", "ladder_columns": [ 16, diff --git a/method_inputs/a1/OOA_EAS/r00000002/n32/meta.json b/method_inputs/a1/OOA_EAS/r00000002/n32/meta.json index 598ffebe147d556eee1de240bd1a5d1e143e584c..cd8fba3cfaccecddb1c028f4d182bc8088766b20 100644 --- a/method_inputs/a1/OOA_EAS/r00000002/n32/meta.json +++ b/method_inputs/a1/OOA_EAS/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 28910, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_OOA_EAS/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_OOA_EAS/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "724e3d7248a8f35beabf96c9a23b0c2745d88e106b3a06155ae8df5614d6b13d", "canonical_id": "bd8f09a5b59883c5cb654a228fd28aaafd2bdd02123281c0e8ef2bc677c747a2:00000002", @@ -50,7 +50,7 @@ "view.bcf": "59e7ebf530ee83675aced1ca3f57e97126a906874a71f96f6e3179d3ff652202", "view.bcf.csi": "b2846998db3de7e22fcf0de5ee110ff6db8818c7335d0c783f362c8b5da6b1b0" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "a25ca39d82c8483e7fce8a493693ea290ab312a27a53c6f660dbd589d26be361", "ladder_columns": [ 23, diff --git a/method_inputs/a1/OOA_EAS/r00000003/n32/meta.json b/method_inputs/a1/OOA_EAS/r00000003/n32/meta.json index 36fea3205d1988f3dedde77b043f07bc844dbd69..0f4199743b6a4e8ed14cbe4355ba5ab37eae4c4e 100644 --- a/method_inputs/a1/OOA_EAS/r00000003/n32/meta.json +++ b/method_inputs/a1/OOA_EAS/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 29244, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_OOA_EAS/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_OOA_EAS/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "724e3d7248a8f35beabf96c9a23b0c2745d88e106b3a06155ae8df5614d6b13d", "canonical_id": "bd8f09a5b59883c5cb654a228fd28aaafd2bdd02123281c0e8ef2bc677c747a2:00000003", @@ -50,7 +50,7 @@ "view.bcf": "76f2988f2e29a1afa2be5b412039d1283411924164a924079d157745ea157855", "view.bcf.csi": "b61491a5f11e72a910a84055d1c707a09ddd36c1ed439d4ca19dc68b36160054" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "a25ca39d82c8483e7fce8a493693ea290ab312a27a53c6f660dbd589d26be361", "ladder_columns": [ 35, diff --git a/method_inputs/a1/OOA_EAS/r00000004/n32/meta.json b/method_inputs/a1/OOA_EAS/r00000004/n32/meta.json index c7defb217cc069fc98dff012d9ec98d4cadc6ed9..0aab913f85e6b82bfac1efa6fda87fae01731e47 100644 --- a/method_inputs/a1/OOA_EAS/r00000004/n32/meta.json +++ b/method_inputs/a1/OOA_EAS/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 28035, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_OOA_EAS/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_OOA_EAS/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "724e3d7248a8f35beabf96c9a23b0c2745d88e106b3a06155ae8df5614d6b13d", "canonical_id": "bd8f09a5b59883c5cb654a228fd28aaafd2bdd02123281c0e8ef2bc677c747a2:00000004", @@ -50,7 +50,7 @@ "view.bcf": "cbbd9a460822ae5dcebdb94db06a6ef3a6afee8fcfa5d64c734897bbaf2fa976", "view.bcf.csi": "acac1617fd452a62cc4bdc0f46b0021b36722e29f4a6da081a192eb55fd71926" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "7ef9df83f0a459c9f816b9bbc5c8225dff63dc687763f52a8995cd2f14b9dde7", "ladder_columns": [ 22, diff --git a/method_inputs/a1/OOA_EAS/r00000005/n32/meta.json b/method_inputs/a1/OOA_EAS/r00000005/n32/meta.json index 86d6a1fc27727c46b0e0f3089a71ad2b9ba8cdea..2d0c64683a56b5e6776d5687b1c81a6578fbb862 100644 --- a/method_inputs/a1/OOA_EAS/r00000005/n32/meta.json +++ b/method_inputs/a1/OOA_EAS/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 28877, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_OOA_EAS/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_OOA_EAS/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "724e3d7248a8f35beabf96c9a23b0c2745d88e106b3a06155ae8df5614d6b13d", "canonical_id": "bd8f09a5b59883c5cb654a228fd28aaafd2bdd02123281c0e8ef2bc677c747a2:00000005", @@ -50,7 +50,7 @@ "view.bcf": "5a4868ff429642cdaf7f62f531a294da7e2621acee3d1ab2a886c1d8f2ab12a2", "view.bcf.csi": "b5b84ac883724551c6a736771a34a893d7c705849c8929370d94457b61f61774" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "7ef9df83f0a459c9f816b9bbc5c8225dff63dc687763f52a8995cd2f14b9dde7", "ladder_columns": [ 8, diff --git a/method_inputs/a1/OOA_EAS/r00000006/n32/meta.json b/method_inputs/a1/OOA_EAS/r00000006/n32/meta.json index 2ad5d0fa9ac07d09213f332c622ff4d3ea295614..3c4b0cd98f51b2926c989f62d29f180ffcae1a8f 100644 --- a/method_inputs/a1/OOA_EAS/r00000006/n32/meta.json +++ b/method_inputs/a1/OOA_EAS/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 28351, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_OOA_EAS/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_OOA_EAS/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "724e3d7248a8f35beabf96c9a23b0c2745d88e106b3a06155ae8df5614d6b13d", "canonical_id": "bd8f09a5b59883c5cb654a228fd28aaafd2bdd02123281c0e8ef2bc677c747a2:00000006", @@ -50,7 +50,7 @@ "view.bcf": "1f0d2b7e835419b22b15ca2dcc0a62259464ed59558980b27f50bcc641785ff8", "view.bcf.csi": "5ab40d43f49180824d5b7f53399ab367ca471189bd3b326a8cdceb31ece1c527" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "7ef9df83f0a459c9f816b9bbc5c8225dff63dc687763f52a8995cd2f14b9dde7", "ladder_columns": [ 60, diff --git a/method_inputs/a1/OOA_EAS/r00000007/n32/meta.json b/method_inputs/a1/OOA_EAS/r00000007/n32/meta.json index bb4d901ae8b80206d704ed418732cd9799876663..534bea176cdb13fc89193f5dc6db794c2efc79e7 100644 --- a/method_inputs/a1/OOA_EAS/r00000007/n32/meta.json +++ b/method_inputs/a1/OOA_EAS/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 28104, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_OOA_EAS/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_OOA_EAS/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "724e3d7248a8f35beabf96c9a23b0c2745d88e106b3a06155ae8df5614d6b13d", "canonical_id": "bd8f09a5b59883c5cb654a228fd28aaafd2bdd02123281c0e8ef2bc677c747a2:00000007", @@ -50,7 +50,7 @@ "view.bcf": "9937e8a4a67fbd65ca7abbbe63d8a586f180566a2176a63f7e34df4263afc784", "view.bcf.csi": "d9e987cd0e5c2505d6f24c5e05fa80df6d55463551a04e4ab7611a4e4889eb32" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "7ef9df83f0a459c9f816b9bbc5c8225dff63dc687763f52a8995cd2f14b9dde7", "ladder_columns": [ 31, diff --git a/method_inputs/a1/OOA_EAS/receipts/export_51933104.json b/method_inputs/a1/OOA_EAS/receipts/export_51933104.json index 4d34f5be46372bcf1a46b4968c34541cd9242620..1d1a0c41e9f7516a131332969bba29ab2371023c 100644 --- a/method_inputs/a1/OOA_EAS/receipts/export_51933104.json +++ b/method_inputs/a1/OOA_EAS/receipts/export_51933104.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_OOA_EAS", "host": "cn113-35-l", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EAS/receipts/identity_scan_51933104.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EAS/receipts/identity_scan_51933104.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "96d807e8d158616f3593acc0a9770c8a2df366693c3a6eebab103bfeb4d7d990" + "sha256": "0c9b800745e62d15e869b9112c453646863574ca2a326bdac7b8fee70e20f744" }, "job": "51933104", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EAS/receipts/open_audit_51933104.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EAS/receipts/open_audit_51933104.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "724e3d7248a8f35beabf96c9a23b0c2745d88e106b3a06155ae8df5614d6b13d", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EAS/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EAS/r00000000/n32", "files": { "multihetsep.txt": "00fc53ba29685d35e588b32d7f3f0915fe1f895726ee8f60fc3cb0e23cd87f73", "phlash_contig.npz": "39a242515cb8d351f49ad44995fa878b0973acd55d1b5daf043076b23c09a0eb", @@ -54,7 +54,7 @@ "view.bcf": "30b5d30636745c72fbb4f71138aa31f7b86e0b7baf2fbcfaa05b8603ab821a6b", "view.bcf.csi": "36204571af599d3946b12accd3825d30d92c09c013d82cd28571db6999d3866d" }, - "meta_sha256": "1fe3a627f7a2047ed31eac1ed61ac0f096dfb8ed47b721d5a4ea5d26bf9d4ef7", + "meta_sha256": "371adef024aafd40c8b6399a15a0d83418aa258ee4d4138fcde27a56f592812c", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "724e3d7248a8f35beabf96c9a23b0c2745d88e106b3a06155ae8df5614d6b13d", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EAS/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EAS/r00000001/n32", "files": { "multihetsep.txt": "a360b9ee15f30de632a62d630d4b0dab38cdb5fb460cd0dc72f65343389d98ad", "phlash_contig.npz": "371d76f1ec75b32f3c597fdf2daf96c0566cf2dc6d91db96731393746d5984b1", @@ -93,7 +93,7 @@ "view.bcf": "741229dfcddabeb563333432db8f56a87bbe1142b68673414e0a6f5c88df9301", "view.bcf.csi": "f0bf9de614683e7f9c87636b2fbff6658e485fd421d8a19f2e3db75fc9f84968" }, - "meta_sha256": "0b6248ab07ef36059862f07bd43ed5a93db14fba14f15eb53fd385e89ef05239", + "meta_sha256": "61212ec17ec18f08fec7839d4ed92fa91294505f9edbd017583a664a9baaceca", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "724e3d7248a8f35beabf96c9a23b0c2745d88e106b3a06155ae8df5614d6b13d", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EAS/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EAS/r00000002/n32", "files": { "multihetsep.txt": "71f846905e5dcc93d02d5cde2aaec2c9edb259025464017cf57f2c47ee701bf3", "phlash_contig.npz": "a454de82a0f3133d71ad52acb7a6c2c6ff4f157a4e025deb8c26af130505bc59", @@ -132,7 +132,7 @@ "view.bcf": "59e7ebf530ee83675aced1ca3f57e97126a906874a71f96f6e3179d3ff652202", "view.bcf.csi": "b2846998db3de7e22fcf0de5ee110ff6db8818c7335d0c783f362c8b5da6b1b0" }, - "meta_sha256": "8b507eb3ccdd4344b3c702a4e8e62a7aa1c0de4b70ec70af2dbc59e30e53b507", + "meta_sha256": "9389b9aaaecf6d19dcc74d1a38116308fce644762985ba0b7fd8a84cb6bf6ea9", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "724e3d7248a8f35beabf96c9a23b0c2745d88e106b3a06155ae8df5614d6b13d", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EAS/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EAS/r00000003/n32", "files": { "multihetsep.txt": "508e3abe5586996b6f519efef102c626418a8dfbd417e3f88acf54b8e9bdb79c", "phlash_contig.npz": "983fa2c68b5269573f635376af0a892eb4fccfe2cc1ae3c7a1d9efae45c2d7ec", @@ -171,7 +171,7 @@ "view.bcf": "76f2988f2e29a1afa2be5b412039d1283411924164a924079d157745ea157855", "view.bcf.csi": "b61491a5f11e72a910a84055d1c707a09ddd36c1ed439d4ca19dc68b36160054" }, - "meta_sha256": "44b85cf631e09d811f9afd629cf93ca6a08de9a7345a0305c7ca9df14941f2cf", + "meta_sha256": "1e0152c77b522e92dad615701d380bde6b0251ce91911611972f9f53f3da1f0e", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "724e3d7248a8f35beabf96c9a23b0c2745d88e106b3a06155ae8df5614d6b13d", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EAS/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EAS/r00000004/n32", "files": { "multihetsep.txt": "edce5a953827b286f25d7780773ef54109f1bc8029ea21a26677c03afd2f95e7", "phlash_contig.npz": "5ce36071fa85c01a2bdfe47d1908bca45bfd22570a210e2ce03b6254963d18d7", @@ -210,7 +210,7 @@ "view.bcf": "cbbd9a460822ae5dcebdb94db06a6ef3a6afee8fcfa5d64c734897bbaf2fa976", "view.bcf.csi": "acac1617fd452a62cc4bdc0f46b0021b36722e29f4a6da081a192eb55fd71926" }, - "meta_sha256": "2e469ad7148ac2370fc9dd27694ec5054ea8f7e5b59a55c0941fa171f9e3d794", + "meta_sha256": "c16ddde86b03ae6a40f40e3ac824514fcc9e4db3c62caa034d8b2e1a0e1514ab", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "724e3d7248a8f35beabf96c9a23b0c2745d88e106b3a06155ae8df5614d6b13d", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EAS/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EAS/r00000005/n32", "files": { "multihetsep.txt": "eff727bbe9a94eb8ca9fef2212455d7f779e7c84a14ec067a9c06c43030878e5", "phlash_contig.npz": "91239001d2824e0d6955c8a3050ab97259d8f6f90251c77e7429ad4bda29c629", @@ -249,7 +249,7 @@ "view.bcf": "5a4868ff429642cdaf7f62f531a294da7e2621acee3d1ab2a886c1d8f2ab12a2", "view.bcf.csi": "b5b84ac883724551c6a736771a34a893d7c705849c8929370d94457b61f61774" }, - "meta_sha256": "4e5355cff5c33733d99e2fe4b8fc1daa518b3fe881cc13485cbfc5d6fbfeac69", + "meta_sha256": "20eb123a68408f3dafecde0066febbecc03c2027db0c31bc00f3c44994ef7d2d", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "724e3d7248a8f35beabf96c9a23b0c2745d88e106b3a06155ae8df5614d6b13d", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EAS/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EAS/r00000006/n32", "files": { "multihetsep.txt": "a8cd6134cf15b0e4783da52fa7d2fdb48f30600464ba5cd4142e815b986a0f90", "phlash_contig.npz": "4d8d40e067a7e9f8935adc33da4fa8e59ecec99f470e5d8a1ab140812ce595ea", @@ -288,7 +288,7 @@ "view.bcf": "1f0d2b7e835419b22b15ca2dcc0a62259464ed59558980b27f50bcc641785ff8", "view.bcf.csi": "5ab40d43f49180824d5b7f53399ab367ca471189bd3b326a8cdceb31ece1c527" }, - "meta_sha256": "60b0c0791fd7f085c02395563e73c64cf1a650fb238ee6a6e1ede4bbafac1d84", + "meta_sha256": "5292691717ce088baa8a31d2af945aaef13fc6c04d1661bd1977363e9b5c7170", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "724e3d7248a8f35beabf96c9a23b0c2745d88e106b3a06155ae8df5614d6b13d", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EAS/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EAS/r00000007/n32", "files": { "multihetsep.txt": "66860733ed6de5db83e50a490e851d9867c2b4ba8df0fde485b6ecbba0e1ab3f", "phlash_contig.npz": "1c7239a0669956c92ca49f8d6da6d575446e7791c60a28d0acb6e83ca6796d30", @@ -327,7 +327,7 @@ "view.bcf": "9937e8a4a67fbd65ca7abbbe63d8a586f180566a2176a63f7e34df4263afc784", "view.bcf.csi": "d9e987cd0e5c2505d6f24c5e05fa80df6d55463551a04e4ab7611a4e4889eb32" }, - "meta_sha256": "81378afe0a6b42bc6eb9b45d91a19c8b9abfeedbb9a06015daaec1a3b27d976c", + "meta_sha256": "9dea8fee0197da1209aa72bb530000b9e921ad4d40fac6299320e10fe1108a63", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/OOA_EAS/receipts/identity_scan_51933104.json b/method_inputs/a1/OOA_EAS/receipts/identity_scan_51933104.json index 49af78b9c3a54a4619ce8d21352c1789dd9488a7..ddf58071cc66cc8afdad14b5a0cda48c56127e25 100644 --- a/method_inputs/a1/OOA_EAS/receipts/identity_scan_51933104.json +++ b/method_inputs/a1/OOA_EAS/receipts/identity_scan_51933104.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "bd8f09a5b59883c5cb654a228fd28aaafd2bdd02123281c0e8ef2bc677c747a2" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T10:57:53Z" diff --git a/method_inputs/a1/OOA_EAS/receipts/open_audit_51933104.json b/method_inputs/a1/OOA_EAS/receipts/open_audit_51933104.json index 91cc71681242236d9b5100393e70ea08a806ec7e..1a473ebe1e2129a3f06ab54a8eef98f4e8596bde 100644 --- a/method_inputs/a1/OOA_EAS/receipts/open_audit_51933104.json +++ b/method_inputs/a1/OOA_EAS/receipts/open_audit_51933104.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EAS/receipts/identity_scan_51933104.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EAS/receipts/identity_scan_51933104.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EAS/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_OOA_EAS/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_OOA_EAS/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_OOA_EAS/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_OOA_EAS/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_OOA_EAS/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_OOA_EAS/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EAS/r00000000/.n32.tmp-4ptquws7/view.vcf" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EAS/r00000000/.n32.tmp-4ptquws7/view.vcf" }, { "mode": "w", - 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"cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "1300d68c8d60dd544b4020bffc5161d77d51c13579f6208b3dcc339f14c8c9b7", "canonical_id": "25a10a0ef2c808db05fe5a131c0b78be42139d95c3037b95b2901919c0d23bbb:00000000", @@ -50,7 +50,7 @@ "view.bcf": "2a1022aa6ed9dab54af46facad3f2632f044a712f39229e2fe3c86e4ea2efe38", "view.bcf.csi": "3d8253c177efae1d98d596568c55d6cee5ced53b9b4dd55f3f005e5d6ee0f830" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EUR/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EUR/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "b7b9bb9152e94fbff5e2f7c8feca70ee81f1ceb10f3de23846153a3be79ed189", "ladder_columns": [ 39, diff --git a/method_inputs/a1/OOA_EUR/r00000001/n32/meta.json b/method_inputs/a1/OOA_EUR/r00000001/n32/meta.json index b7bb7b07b36cb50cf98ba8d3d4d574b013c6d49f..43e42cea179045762b86b2d9c427e95382c6eecc 100644 --- a/method_inputs/a1/OOA_EUR/r00000001/n32/meta.json +++ b/method_inputs/a1/OOA_EUR/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 28649, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "1300d68c8d60dd544b4020bffc5161d77d51c13579f6208b3dcc339f14c8c9b7", "canonical_id": "25a10a0ef2c808db05fe5a131c0b78be42139d95c3037b95b2901919c0d23bbb:00000001", @@ -50,7 +50,7 @@ "view.bcf": "2c8f2e8cd302b00badca325df05a516eea0c0abd01c8b2e5577e1ab96729e900", "view.bcf.csi": "a83508abb152ff95dab4f786f55c72193cdcda4009ceb0980fb73c9f0db72e7a" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EUR/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EUR/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "b7b9bb9152e94fbff5e2f7c8feca70ee81f1ceb10f3de23846153a3be79ed189", "ladder_columns": [ 16, diff --git a/method_inputs/a1/OOA_EUR/r00000002/n32/meta.json b/method_inputs/a1/OOA_EUR/r00000002/n32/meta.json index 9aff35b5be9bf3f3ddbd9f99cc7dbdd34d35b0df..6a6223e166508db57060eee21f832e466ad80c5c 100644 --- a/method_inputs/a1/OOA_EUR/r00000002/n32/meta.json +++ b/method_inputs/a1/OOA_EUR/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 29778, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "1300d68c8d60dd544b4020bffc5161d77d51c13579f6208b3dcc339f14c8c9b7", "canonical_id": "25a10a0ef2c808db05fe5a131c0b78be42139d95c3037b95b2901919c0d23bbb:00000002", @@ -50,7 +50,7 @@ "view.bcf": "cc832046e588b4e19505c4510a4db8197640ba8a2c102d757e32ea343de0ca2b", "view.bcf.csi": "05054f4d294c08eafcdd49731bc4bdc5fd0caaadbdb45e0b57865d0a0343a9aa" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EUR/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EUR/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "b7b9bb9152e94fbff5e2f7c8feca70ee81f1ceb10f3de23846153a3be79ed189", "ladder_columns": [ 23, diff --git a/method_inputs/a1/OOA_EUR/r00000003/n32/meta.json b/method_inputs/a1/OOA_EUR/r00000003/n32/meta.json index a5452880c64af066126824089b0e1de9d677b0b5..90398f7a296d69bdde5ad21fff374425757b168d 100644 --- a/method_inputs/a1/OOA_EUR/r00000003/n32/meta.json +++ b/method_inputs/a1/OOA_EUR/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 29607, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "1300d68c8d60dd544b4020bffc5161d77d51c13579f6208b3dcc339f14c8c9b7", "canonical_id": "25a10a0ef2c808db05fe5a131c0b78be42139d95c3037b95b2901919c0d23bbb:00000003", @@ -50,7 +50,7 @@ "view.bcf": "5cfc71c51885ed5d7dcf3ea35d547fd48b47e4848950294cc429dc0e43ef0194", "view.bcf.csi": "7f77851cb0df2a8b2046057740a98556576d340e59fd34963f41eb394ffcd0a0" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EUR/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EUR/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "b7b9bb9152e94fbff5e2f7c8feca70ee81f1ceb10f3de23846153a3be79ed189", "ladder_columns": [ 35, diff --git a/method_inputs/a1/OOA_EUR/r00000004/n32/meta.json b/method_inputs/a1/OOA_EUR/r00000004/n32/meta.json index de23e7138603f08a437a073bd06206ee391d3d08..3f20bb4608426ad2cfdaeb2f64370f5bdd774038 100644 --- a/method_inputs/a1/OOA_EUR/r00000004/n32/meta.json +++ b/method_inputs/a1/OOA_EUR/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 29791, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "1300d68c8d60dd544b4020bffc5161d77d51c13579f6208b3dcc339f14c8c9b7", "canonical_id": "25a10a0ef2c808db05fe5a131c0b78be42139d95c3037b95b2901919c0d23bbb:00000004", @@ -50,7 +50,7 @@ "view.bcf": "7212e09c78c5c00b808b2ac30133350e1f2f0d026544c14f21ebc8c05088fd2c", "view.bcf.csi": "0b155de50be1725ba8295de93fca7d3c696ca46133134f38dd811e4d1dc9a461" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EUR/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EUR/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "fc2c899fc30982619aa7d36e971fdcae6008814aeaea7882c3a402aedf0ef576", "ladder_columns": [ 22, diff --git a/method_inputs/a1/OOA_EUR/r00000005/n32/meta.json b/method_inputs/a1/OOA_EUR/r00000005/n32/meta.json index 6194c0b19ab5184977b228ae8cad659eaedd18d6..9fc42da235a409832544f0634a95ba8aaaceb4ab 100644 --- a/method_inputs/a1/OOA_EUR/r00000005/n32/meta.json +++ b/method_inputs/a1/OOA_EUR/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 30821, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "1300d68c8d60dd544b4020bffc5161d77d51c13579f6208b3dcc339f14c8c9b7", "canonical_id": "25a10a0ef2c808db05fe5a131c0b78be42139d95c3037b95b2901919c0d23bbb:00000005", @@ -50,7 +50,7 @@ "view.bcf": "30c772ce0eb88d8b2b17f0a12883c2f3be6006e8fd40d8eee383c4b70f50af66", "view.bcf.csi": "e8823817256f8035f7a3f531ff20a2ff99dca2ecea588d9ea2bd81c47504e472" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EUR/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EUR/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "fc2c899fc30982619aa7d36e971fdcae6008814aeaea7882c3a402aedf0ef576", "ladder_columns": [ 8, diff --git a/method_inputs/a1/OOA_EUR/r00000006/n32/meta.json b/method_inputs/a1/OOA_EUR/r00000006/n32/meta.json index 8364aa5adc652a51653d306e07ecd4207667bded..3777ed57aa29668578d268de0fd4ddbab45e0f90 100644 --- a/method_inputs/a1/OOA_EUR/r00000006/n32/meta.json +++ b/method_inputs/a1/OOA_EUR/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 30210, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "1300d68c8d60dd544b4020bffc5161d77d51c13579f6208b3dcc339f14c8c9b7", "canonical_id": "25a10a0ef2c808db05fe5a131c0b78be42139d95c3037b95b2901919c0d23bbb:00000006", @@ -50,7 +50,7 @@ "view.bcf": "2fe50d5578449337e5efccb1b12f40ddd18606997b3ee1efb37ad9d486379087", "view.bcf.csi": "7b06b469a03a52c8b5fffa751b5623a7cbbac88b63150c3487b4734cefefbdf4" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EUR/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EUR/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "fc2c899fc30982619aa7d36e971fdcae6008814aeaea7882c3a402aedf0ef576", "ladder_columns": [ 60, diff --git a/method_inputs/a1/OOA_EUR/r00000007/n32/meta.json b/method_inputs/a1/OOA_EUR/r00000007/n32/meta.json index 8ee6799293edf13926d00a700db48dbca7f282d5..3c96dc2c3f2ad74882f73fa2831ada51e668e55d 100644 --- a/method_inputs/a1/OOA_EUR/r00000007/n32/meta.json +++ b/method_inputs/a1/OOA_EUR/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 29666, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "1300d68c8d60dd544b4020bffc5161d77d51c13579f6208b3dcc339f14c8c9b7", "canonical_id": "25a10a0ef2c808db05fe5a131c0b78be42139d95c3037b95b2901919c0d23bbb:00000007", @@ -50,7 +50,7 @@ "view.bcf": "345cd33573e89274e88fa7732be6d89013a513d74afd48873d1163cc6b7a49d0", "view.bcf.csi": "88d992500ca46e98d341d1c79aa354f996387171ef6d19709df83f0d74f68d02" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EUR/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EUR/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "fc2c899fc30982619aa7d36e971fdcae6008814aeaea7882c3a402aedf0ef576", "ladder_columns": [ 31, diff --git a/method_inputs/a1/OOA_EUR/receipts/export_51933102.json b/method_inputs/a1/OOA_EUR/receipts/export_51933102.json index b9ff13a4d0cc6078d53143e8d87209c2425b6f12..ea8dcba985b06df95f697b63fd778f0d73eceaa3 100644 --- a/method_inputs/a1/OOA_EUR/receipts/export_51933102.json +++ b/method_inputs/a1/OOA_EUR/receipts/export_51933102.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_OOA_EUR", "host": "cn113-35-l", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EUR/receipts/identity_scan_51933102.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EUR/receipts/identity_scan_51933102.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "84123936d5795b1cc0807be81531a4ff78bf53b96eecbc5f4613968c0c627d02" + "sha256": "473346fc8bc34110d4169285dc95a8959ecc64116bc282e4b468d619a5349c6e" }, "job": "51933102", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EUR/receipts/open_audit_51933102.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EUR/receipts/open_audit_51933102.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "1300d68c8d60dd544b4020bffc5161d77d51c13579f6208b3dcc339f14c8c9b7", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EUR/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EUR/r00000000/n32", "files": { "multihetsep.txt": "2ae4b7ccff60bc5ba4bda32f9e9cf31f461d8cb279f721705eae040e901fddcf", "phlash_contig.npz": "8894c912f87509543301b9964e7865357095516efca17384fecf274586f428d6", @@ -54,7 +54,7 @@ "view.bcf": "2a1022aa6ed9dab54af46facad3f2632f044a712f39229e2fe3c86e4ea2efe38", "view.bcf.csi": "3d8253c177efae1d98d596568c55d6cee5ced53b9b4dd55f3f005e5d6ee0f830" }, - "meta_sha256": "b273106ce849e0cb78d4a75a424dce104987ce2bce5d989e51d0460016164be1", + "meta_sha256": "0a776e7ce7ac080cd1a146406db2c1484d7eb9c989bd2c16f2e1204e544953eb", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "1300d68c8d60dd544b4020bffc5161d77d51c13579f6208b3dcc339f14c8c9b7", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EUR/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EUR/r00000001/n32", "files": { "multihetsep.txt": "230b700822efe7557890e049fbbabb7e3a2613627aa4ccfece163a29cf5b8254", "phlash_contig.npz": "5b9748f3dc4bfd78a34847e105184f2785b9ee8ec36d9abf6a5404baa2f3a83e", @@ -93,7 +93,7 @@ "view.bcf": "2c8f2e8cd302b00badca325df05a516eea0c0abd01c8b2e5577e1ab96729e900", "view.bcf.csi": "a83508abb152ff95dab4f786f55c72193cdcda4009ceb0980fb73c9f0db72e7a" }, - "meta_sha256": "fd5f04fa5099b0be623b001dc6994a8802894ca454e47ffc945a8b74acb3f644", + "meta_sha256": "ee1cd671640e1a3bd8b992525fcfc00e5d1abb498795cba05a837758da2f9625", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "1300d68c8d60dd544b4020bffc5161d77d51c13579f6208b3dcc339f14c8c9b7", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EUR/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EUR/r00000002/n32", "files": { "multihetsep.txt": "5347fa1401465e53ac7b55dd84a2f9235470149faa2e567c7208f95f9fded25c", "phlash_contig.npz": "99493f295f7625a5aeaa1d14563a95367ea7f0b1b1db5a4c58731bc9754280b3", @@ -132,7 +132,7 @@ "view.bcf": "cc832046e588b4e19505c4510a4db8197640ba8a2c102d757e32ea343de0ca2b", "view.bcf.csi": "05054f4d294c08eafcdd49731bc4bdc5fd0caaadbdb45e0b57865d0a0343a9aa" }, - "meta_sha256": "117f0bf4c1283b41a034d6412218c12c42b64f0ea93fbc8f8b5f64f8affeea87", + "meta_sha256": "acff75dfe910790299d53bef1157c85b3ae5427d66fe3ec051b9b197adfd59b8", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "1300d68c8d60dd544b4020bffc5161d77d51c13579f6208b3dcc339f14c8c9b7", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EUR/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EUR/r00000003/n32", "files": { "multihetsep.txt": "c0d05cde9b6ae7313835df65038c48185a70a51b7d0341be2adda3927c6be4fb", "phlash_contig.npz": "4e859f244a93e489a25e12825d5ac58c8dc8b315dfa84fe753fe6bc423d0021f", @@ -171,7 +171,7 @@ "view.bcf": "5cfc71c51885ed5d7dcf3ea35d547fd48b47e4848950294cc429dc0e43ef0194", "view.bcf.csi": "7f77851cb0df2a8b2046057740a98556576d340e59fd34963f41eb394ffcd0a0" }, - "meta_sha256": "b3bf06330bb8d00b07c46d8004e7bdb62c9c8a6acded44ff1b7332d228aa31d0", + "meta_sha256": "415359062491174119d65cc992de0f341d00267a9e97e2fa9825b565fb11a98e", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "1300d68c8d60dd544b4020bffc5161d77d51c13579f6208b3dcc339f14c8c9b7", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EUR/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EUR/r00000004/n32", "files": { "multihetsep.txt": "8b203fce719af219dac3e31d645f65cbdd3fb5eab3d086ee1c116ea314dc89b4", "phlash_contig.npz": "0f64b70303ce83acb3d27eb1235c9409c119acd372f059ddbe7aa3f989a555dd", @@ -210,7 +210,7 @@ "view.bcf": "7212e09c78c5c00b808b2ac30133350e1f2f0d026544c14f21ebc8c05088fd2c", "view.bcf.csi": "0b155de50be1725ba8295de93fca7d3c696ca46133134f38dd811e4d1dc9a461" }, - "meta_sha256": "d3f5b03ba236d5da23e071505ac33599995011813a571665966b23e41a4cb320", + "meta_sha256": "eb9e9d78aeb7ffc8ad38d7f7430765c6a40cae5ecba3873d69b1d9bdf2498dd4", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "1300d68c8d60dd544b4020bffc5161d77d51c13579f6208b3dcc339f14c8c9b7", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EUR/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EUR/r00000005/n32", "files": { "multihetsep.txt": "d12c46cc71abb062e4db92346dff2e46bda1897c9a379ffee6a38f6563129b57", "phlash_contig.npz": "8885568c45d51194fe3ac8c1ef40fa75f0f125c61f77fad63251d64aca708d8c", @@ -249,7 +249,7 @@ "view.bcf": "30c772ce0eb88d8b2b17f0a12883c2f3be6006e8fd40d8eee383c4b70f50af66", "view.bcf.csi": "e8823817256f8035f7a3f531ff20a2ff99dca2ecea588d9ea2bd81c47504e472" }, - "meta_sha256": "d301abebd0eee5c98540fbfbce8d0c11bb71e1e9fb196618adf5ccc987271e3d", + "meta_sha256": "0d9f93e5ab3506e5a4201f338e8b62cfafa98df2ba14e19e5084ca4adc3de492", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "1300d68c8d60dd544b4020bffc5161d77d51c13579f6208b3dcc339f14c8c9b7", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EUR/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EUR/r00000006/n32", "files": { "multihetsep.txt": "6a50ff59a4ab960eabe4413cbeb5187c8f46274ceb1b3a46a1acbab8bfbed216", "phlash_contig.npz": "3a867ba05d807e561d287cc1bd33c8fae4ae57b999cb8500f270145bfd738f81", @@ -288,7 +288,7 @@ "view.bcf": "2fe50d5578449337e5efccb1b12f40ddd18606997b3ee1efb37ad9d486379087", "view.bcf.csi": "7b06b469a03a52c8b5fffa751b5623a7cbbac88b63150c3487b4734cefefbdf4" }, - "meta_sha256": "5d2126b143b7d609fca78833c9bec5028a6946f63735d4669cb1a0cafab9d020", + "meta_sha256": "19b0df01380882b90757feeafe2c8e685309830b69c0c073cf976da051633968", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "1300d68c8d60dd544b4020bffc5161d77d51c13579f6208b3dcc339f14c8c9b7", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EUR/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EUR/r00000007/n32", "files": { "multihetsep.txt": "e6cee6d7358075b01fdc192f31c3c345e1e1b027817f97c8d093e96d491a5a20", "phlash_contig.npz": "55253fea10272fa9c9e7aad18c32470c6054f598f07fd23284bd388380315538", @@ -327,7 +327,7 @@ "view.bcf": "345cd33573e89274e88fa7732be6d89013a513d74afd48873d1163cc6b7a49d0", "view.bcf.csi": "88d992500ca46e98d341d1c79aa354f996387171ef6d19709df83f0d74f68d02" }, - "meta_sha256": "83fdd0ba94e7a74765d2709a44f4b76553e057533d73a1afc3b87df3483d6993", + "meta_sha256": "b071729cda247a551d490a230ef1c2e5dd9517160aa2b934b7f2b1fe4a087c76", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/OOA_EUR/receipts/identity_scan_51933102.json b/method_inputs/a1/OOA_EUR/receipts/identity_scan_51933102.json index 30ba45555ea70aac0e6d73571b5081a66be1657d..921db730678cb3ef08c33d6f6714f592cd2fd496 100644 --- a/method_inputs/a1/OOA_EUR/receipts/identity_scan_51933102.json +++ b/method_inputs/a1/OOA_EUR/receipts/identity_scan_51933102.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "25a10a0ef2c808db05fe5a131c0b78be42139d95c3037b95b2901919c0d23bbb" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T10:57:47Z" diff --git a/method_inputs/a1/OOA_EUR/receipts/open_audit_51933102.json b/method_inputs/a1/OOA_EUR/receipts/open_audit_51933102.json index 5560ea886b60a299599a7cb0b8cee6234c345951..fc2e32dae7801a40a1dad436060fa8331aa175ed 100644 --- a/method_inputs/a1/OOA_EUR/receipts/open_audit_51933102.json +++ b/method_inputs/a1/OOA_EUR/receipts/open_audit_51933102.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EUR/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EUR/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EUR/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EUR/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_OOA_EUR/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_OOA_EUR/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EUR/receipts/identity_scan_51933102.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EUR/receipts/identity_scan_51933102.json" }, { "mode": "r", - 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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_OOA_EUR/receipts/export_51933102.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_OOA_EUR/receipts/export_51933102.json" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/events.log" + "path": "$WORK/bench_h2h_20260915/events.log" } ], "purposes": [ diff --git a/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000000/n32/meta.json b/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000000/n32/meta.json index 90718907963c0a7f66d13a2a05da74b36a99126c..5566ab5bff698137bcb948ea3605c65291428d8c 100644 --- a/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000000/n32/meta.json +++ b/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000000/n32/meta.json @@ -2,7 +2,7 @@ "S": 803014, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_AnoGam_GabonAg1000G_1A17/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_AnoGam_GabonAg1000G_1A17/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "9845e25d6c88b8e191abea029e1664f0a14d7bae2f9344c8d4feb6cd488a1db3", "canonical_id": "c9758f90b6501d9ff65087eb3c4d89f5a089cdd71f6c3aef54d5f874adc78fbd:00000000", @@ -50,7 +50,7 @@ "view.bcf": "99e64dbe6614165e41603d0197b2bd79adc0b7b13c45f3965ae776d7886c94a1", "view.bcf.csi": "e602997adb9887e37067b03c7d44b672a1326d259616d92ec9c57fc19a09416d" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "8340bfd21b68db229c1d0c3bbd9f0d1624e033271051e1c96926c88e499e8091", "ladder_columns": [ 39, diff --git a/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000001/n32/meta.json b/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000001/n32/meta.json index 66d69be4518397be0e2e4a823b8914d845d682bb..ac7ceb54623549b325f71c49d9a0dc0b53944478 100644 --- a/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000001/n32/meta.json +++ b/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 802089, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_AnoGam_GabonAg1000G_1A17/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_AnoGam_GabonAg1000G_1A17/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "9845e25d6c88b8e191abea029e1664f0a14d7bae2f9344c8d4feb6cd488a1db3", "canonical_id": "c9758f90b6501d9ff65087eb3c4d89f5a089cdd71f6c3aef54d5f874adc78fbd:00000001", @@ -50,7 +50,7 @@ "view.bcf": "7457165273148e39fcb3b50e84e2f6a696ea9684efbbe08b9a9455cfe7818c78", "view.bcf.csi": "32d63e813695782376b629e8de86d54fef4692048b2d6fd75d2db298123641b9" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "8340bfd21b68db229c1d0c3bbd9f0d1624e033271051e1c96926c88e499e8091", "ladder_columns": [ 16, diff --git a/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000002/n32/meta.json b/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000002/n32/meta.json index 371e54da608f1e87cfdf130bdbf757579707c26e..cbecd15979bd4f0e084590a00da7b4c57397858a 100644 --- a/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000002/n32/meta.json +++ b/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 806683, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_AnoGam_GabonAg1000G_1A17/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_AnoGam_GabonAg1000G_1A17/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "9845e25d6c88b8e191abea029e1664f0a14d7bae2f9344c8d4feb6cd488a1db3", "canonical_id": "c9758f90b6501d9ff65087eb3c4d89f5a089cdd71f6c3aef54d5f874adc78fbd:00000002", @@ -50,7 +50,7 @@ "view.bcf": "12d998bcf85f9321d6a1b44a4121b2b5362a89080053df544f7324ee07c85c69", "view.bcf.csi": "5a635b50ea6c107037e0cc7c766fd1b21172c5684e848ff1793d8279a140d035" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "8340bfd21b68db229c1d0c3bbd9f0d1624e033271051e1c96926c88e499e8091", "ladder_columns": [ 23, diff --git a/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000003/n32/meta.json b/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000003/n32/meta.json index bc6f580b8d40990b1254e4672745f9b0ba1a4281..814be9d5ef8942385805b33191225ef04f4e3c73 100644 --- a/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000003/n32/meta.json +++ b/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 803753, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_AnoGam_GabonAg1000G_1A17/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_AnoGam_GabonAg1000G_1A17/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "9845e25d6c88b8e191abea029e1664f0a14d7bae2f9344c8d4feb6cd488a1db3", "canonical_id": "c9758f90b6501d9ff65087eb3c4d89f5a089cdd71f6c3aef54d5f874adc78fbd:00000003", @@ -50,7 +50,7 @@ "view.bcf": "4b0559bd1f6bb97d9b5ba85318e656a024ea79a11765a5f33f81f097c31917a9", "view.bcf.csi": "4dcc2f44cdd532147f02de7dfc9f09cead24c5c8e480660cac609d419a78f1ff" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "8340bfd21b68db229c1d0c3bbd9f0d1624e033271051e1c96926c88e499e8091", "ladder_columns": [ 35, diff --git a/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000004/n32/meta.json b/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000004/n32/meta.json index 5c61de2c1ca4e7b40172e8b87102cf9f5f214873..3819ac661ecf98fbec1055fb999cc52f53f323fb 100644 --- a/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000004/n32/meta.json +++ b/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 798302, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_AnoGam_GabonAg1000G_1A17/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_AnoGam_GabonAg1000G_1A17/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "9845e25d6c88b8e191abea029e1664f0a14d7bae2f9344c8d4feb6cd488a1db3", "canonical_id": "c9758f90b6501d9ff65087eb3c4d89f5a089cdd71f6c3aef54d5f874adc78fbd:00000004", @@ -50,7 +50,7 @@ "view.bcf": "7885f644901bf3e137f96132589458ac6a71348282de0706387c17037d8c4239", "view.bcf.csi": "96cc025e58e221030324f9b1a6e893a99d3b52d18107b6b8b84caddf1d0d1583" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "a9c9d5dbc7634348a68e657ca9807af11a6a695886fde29f79955500f86b9180", "ladder_columns": [ 22, diff --git a/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000005/n32/meta.json b/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000005/n32/meta.json index 7abe7f4f7de253bc64bd27823df4fb807d953424..82cd7f7626e2ecb2cf561f58b74864f7c3166575 100644 --- a/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000005/n32/meta.json +++ b/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 802239, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_AnoGam_GabonAg1000G_1A17/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_AnoGam_GabonAg1000G_1A17/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "9845e25d6c88b8e191abea029e1664f0a14d7bae2f9344c8d4feb6cd488a1db3", "canonical_id": "c9758f90b6501d9ff65087eb3c4d89f5a089cdd71f6c3aef54d5f874adc78fbd:00000005", @@ -50,7 +50,7 @@ "view.bcf": "9e206d08d3b6f3cfee2cabff517c4309319933c12f87ed28f749fdac5caefd73", "view.bcf.csi": "eaeae764be8a95cdf5390fb613a490b33e9d90a92442e427e22ed61359a43fd5" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "a9c9d5dbc7634348a68e657ca9807af11a6a695886fde29f79955500f86b9180", "ladder_columns": [ 8, diff --git a/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000006/n32/meta.json b/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000006/n32/meta.json index b71b338db5fcf74b40069e6dc1687c21b840e761..d659346af0ef41286088f61d488dcf2a43d862a5 100644 --- a/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000006/n32/meta.json +++ b/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 805829, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_AnoGam_GabonAg1000G_1A17/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_AnoGam_GabonAg1000G_1A17/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "9845e25d6c88b8e191abea029e1664f0a14d7bae2f9344c8d4feb6cd488a1db3", "canonical_id": "c9758f90b6501d9ff65087eb3c4d89f5a089cdd71f6c3aef54d5f874adc78fbd:00000006", @@ -50,7 +50,7 @@ "view.bcf": "eb9a4a11d2cc70a5aa85268d54d6ec672aa9aabb66269b98d0a341ee8cc858ca", "view.bcf.csi": "6f935cc46afc5f42a2cc1df62c7190ce5872f9f758dbdd271e6909afcbf5c0ec" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "a9c9d5dbc7634348a68e657ca9807af11a6a695886fde29f79955500f86b9180", "ladder_columns": [ 60, diff --git a/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000007/n32/meta.json b/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000007/n32/meta.json index 06f0362e0a08b86cb0b275e97439f971ce179957..ab1b1e33255b3287530d0a95670e124454278cd6 100644 --- a/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000007/n32/meta.json +++ b/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 807197, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_AnoGam_GabonAg1000G_1A17/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_AnoGam_GabonAg1000G_1A17/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "9845e25d6c88b8e191abea029e1664f0a14d7bae2f9344c8d4feb6cd488a1db3", "canonical_id": "c9758f90b6501d9ff65087eb3c4d89f5a089cdd71f6c3aef54d5f874adc78fbd:00000007", @@ -50,7 +50,7 @@ "view.bcf": "0b50c027bb4b816e8dac2fad315da8f0b7a614320d1a5e2f2c5e68abf9f443c5", "view.bcf.csi": "0b028fe4f7ef0a7f34500678610d4cc1ba26df7cd8582701518f68c011a54931" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "a9c9d5dbc7634348a68e657ca9807af11a6a695886fde29f79955500f86b9180", "ladder_columns": [ 31, diff --git a/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/receipts/export_51935488.json b/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/receipts/export_51935488.json index 73a03031b2758f053dbc9293ec21ef98f3a19ee1..6f6f03be8bea110a423b82ca9cd90f87b8b9da5e 100644 --- a/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/receipts/export_51935488.json +++ b/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/receipts/export_51935488.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_S1_AnoGam_GabonAg1000G_1A17", "host": "cn511-05", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AnoGam_GabonAg1000G_1A17/receipts/identity_scan_51935488.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AnoGam_GabonAg1000G_1A17/receipts/identity_scan_51935488.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "afb0b5b54494f05b7d1917167c3904784b1890304891232c568e769ca2829a5e" + "sha256": "004ebb9c6fee37bd904cc9576697d92eedc7f7e79eb8ffafc1e4167e5f2221fa" }, "job": "51935488", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AnoGam_GabonAg1000G_1A17/receipts/open_audit_51935488.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AnoGam_GabonAg1000G_1A17/receipts/open_audit_51935488.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "9845e25d6c88b8e191abea029e1664f0a14d7bae2f9344c8d4feb6cd488a1db3", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AnoGam_GabonAg1000G_1A17/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AnoGam_GabonAg1000G_1A17/r00000000/n32", "files": { "multihetsep.txt": "89806ba4f52c23d106dca2e863f59caa8d465a62af4ff0e0bd4b03496522758c", "phlash_contig.npz": "376adf29310d2ba7858eeb52bc99cc840204e6dba95aa02a947e35f7a88c88b9", @@ -54,7 +54,7 @@ "view.bcf": "99e64dbe6614165e41603d0197b2bd79adc0b7b13c45f3965ae776d7886c94a1", "view.bcf.csi": "e602997adb9887e37067b03c7d44b672a1326d259616d92ec9c57fc19a09416d" }, - "meta_sha256": "28b64fac686e32fe714828e01ba096d260f87a24ad027d443b9755d1d63ef424", + "meta_sha256": "96f0fd595c4ac1fe8078365353f23f1a2dfc9caafaf9ee31751ddaadead6e85f", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "9845e25d6c88b8e191abea029e1664f0a14d7bae2f9344c8d4feb6cd488a1db3", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AnoGam_GabonAg1000G_1A17/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AnoGam_GabonAg1000G_1A17/r00000001/n32", "files": { "multihetsep.txt": "17b7ce19cff0a4f66f91a117265f779fa68fc7d6f5dd325038ff50e01d1928f9", "phlash_contig.npz": "f91e8c9b1e7ddfb2339105f5313d4b14216087016a9dba1bfd0112bc9b285d62", @@ -93,7 +93,7 @@ "view.bcf": "7457165273148e39fcb3b50e84e2f6a696ea9684efbbe08b9a9455cfe7818c78", "view.bcf.csi": "32d63e813695782376b629e8de86d54fef4692048b2d6fd75d2db298123641b9" }, - "meta_sha256": "52c460a6e9856d963c000117528385233b8ab661ac3717b6858f4d70d1184bee", + "meta_sha256": "aa3124338f9df0de5a1a66b0f29916d30f5142eae79ee108de0d5d511ececad5", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "9845e25d6c88b8e191abea029e1664f0a14d7bae2f9344c8d4feb6cd488a1db3", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AnoGam_GabonAg1000G_1A17/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AnoGam_GabonAg1000G_1A17/r00000002/n32", "files": { "multihetsep.txt": "b1ebc74380b2cf35b0af87be6e8e4865fbf26d823ed3a78b669bc1af6d11e4fa", "phlash_contig.npz": "742ce6a0def4f8f94a60adb0347cfa2b566f36adb66bff2599b5b5ebdb71004d", @@ -132,7 +132,7 @@ "view.bcf": "12d998bcf85f9321d6a1b44a4121b2b5362a89080053df544f7324ee07c85c69", "view.bcf.csi": "5a635b50ea6c107037e0cc7c766fd1b21172c5684e848ff1793d8279a140d035" }, - "meta_sha256": "8c34298dc570275e723072e19e8b7810d5ae4b5086664ac3301c39a337259444", + "meta_sha256": "9495b0263c42e9516c72aa79f18abd149254ffd19112472c3acf07fd9e5f5659", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "9845e25d6c88b8e191abea029e1664f0a14d7bae2f9344c8d4feb6cd488a1db3", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AnoGam_GabonAg1000G_1A17/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AnoGam_GabonAg1000G_1A17/r00000003/n32", "files": { "multihetsep.txt": "115ad4591d4b873181a13535483fcfff8c41c27e09d72b51adcc2c52101f0060", "phlash_contig.npz": "fe62a88eaf5f724d86c9be2d56ed9c5a78fa457c9b815bc566fef24d6b0dff74", @@ -171,7 +171,7 @@ "view.bcf": "4b0559bd1f6bb97d9b5ba85318e656a024ea79a11765a5f33f81f097c31917a9", "view.bcf.csi": "4dcc2f44cdd532147f02de7dfc9f09cead24c5c8e480660cac609d419a78f1ff" }, - "meta_sha256": "46974572344ed33299c7ca8399174c1c0016d388361c23ee82267ac27d055c3c", + "meta_sha256": "9c3c4710fc067bb234142e0eab97a23407b9e4dd587c122af034b97116cc69f6", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "9845e25d6c88b8e191abea029e1664f0a14d7bae2f9344c8d4feb6cd488a1db3", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AnoGam_GabonAg1000G_1A17/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AnoGam_GabonAg1000G_1A17/r00000004/n32", "files": { "multihetsep.txt": "8c80eb58e4e79a77cac2232a4461943a379c1a8fb7d4228256fcb1247b0c2e43", "phlash_contig.npz": "4f12e7a5165525f7f400305a69f44d9ddfa41129c98acad66b0b1faf1e1d2f59", @@ -210,7 +210,7 @@ "view.bcf": "7885f644901bf3e137f96132589458ac6a71348282de0706387c17037d8c4239", "view.bcf.csi": "96cc025e58e221030324f9b1a6e893a99d3b52d18107b6b8b84caddf1d0d1583" }, - "meta_sha256": "dbc070f6504df0a358d7e9534dffa24b02dd49f620cc08e8b6e2f223073e3f72", + "meta_sha256": "d893f3476f44bcc0b9b352119b42c3f395e0e7710c71c12031d097f57c9ee6de", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "9845e25d6c88b8e191abea029e1664f0a14d7bae2f9344c8d4feb6cd488a1db3", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AnoGam_GabonAg1000G_1A17/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AnoGam_GabonAg1000G_1A17/r00000005/n32", "files": { "multihetsep.txt": "db8a4a2a2eb30758ba6ec49e93919622181e26cc62f652293eb60a7604e04fb0", "phlash_contig.npz": "456d0448d382cc1e0fd42ca3f928eb794991f64c485c43382a27ec58050935f7", @@ -249,7 +249,7 @@ "view.bcf": "9e206d08d3b6f3cfee2cabff517c4309319933c12f87ed28f749fdac5caefd73", "view.bcf.csi": "eaeae764be8a95cdf5390fb613a490b33e9d90a92442e427e22ed61359a43fd5" }, - "meta_sha256": "54017c139b66783d26fcf204ab6860c2b1a9118ca12301c1dc5cc31b8cd2074c", + "meta_sha256": "ae48fe8042d7a0d18978e381c2182270e2d1327c0f8cd2e5bdcc4e8867dd6cf1", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "9845e25d6c88b8e191abea029e1664f0a14d7bae2f9344c8d4feb6cd488a1db3", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AnoGam_GabonAg1000G_1A17/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AnoGam_GabonAg1000G_1A17/r00000006/n32", "files": { "multihetsep.txt": "e5ea1c5ebd2641310837405301a0cc879a73923191d4477a1d8161df9e095417", "phlash_contig.npz": "58456ba7fa332df0ae1323815e7107f52db0d9f30c834d2220c401f1a4dacefb", @@ -288,7 +288,7 @@ "view.bcf": "eb9a4a11d2cc70a5aa85268d54d6ec672aa9aabb66269b98d0a341ee8cc858ca", "view.bcf.csi": "6f935cc46afc5f42a2cc1df62c7190ce5872f9f758dbdd271e6909afcbf5c0ec" }, - "meta_sha256": "dd0fe066725373c160dbf29d19e83b23b1ee312b0d6bc15b9afc725429c34261", + "meta_sha256": "6d5614ce5de7c59760f4be5468220c8bef67a748c1ce731f80d1dd4b52cb9aa6", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "9845e25d6c88b8e191abea029e1664f0a14d7bae2f9344c8d4feb6cd488a1db3", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AnoGam_GabonAg1000G_1A17/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AnoGam_GabonAg1000G_1A17/r00000007/n32", "files": { "multihetsep.txt": "e73de70fa0bac3522ddee116ef39b3d219a0e68a6ca0f343638604cab2a8007b", "phlash_contig.npz": "497a2d26c07d5575f76f29abd3cc9057b6b60eafe813931d1694a34e92e7289d", @@ -327,7 +327,7 @@ "view.bcf": "0b50c027bb4b816e8dac2fad315da8f0b7a614320d1a5e2f2c5e68abf9f443c5", "view.bcf.csi": "0b028fe4f7ef0a7f34500678610d4cc1ba26df7cd8582701518f68c011a54931" }, - "meta_sha256": "70cabdb6909d0d207dd89b51a51217928539acdbf745e3fde0d613f22775fd7d", + "meta_sha256": "7cc2679a0af3a27bb21407c999630a31065742648cefd049b0443dd4ff8f38b5", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/receipts/identity_scan_51935488.json b/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/receipts/identity_scan_51935488.json index 9557c035f8c9e4f3a4a535546eb725c8de33dae1..d8330c67689dd03913123d56779adf8a71eb4f7e 100644 --- a/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/receipts/identity_scan_51935488.json +++ b/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/receipts/identity_scan_51935488.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "c9758f90b6501d9ff65087eb3c4d89f5a089cdd71f6c3aef54d5f874adc78fbd" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T12:00:50Z" diff --git a/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/receipts/open_audit_51935488.json b/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/receipts/open_audit_51935488.json index e7ea587a5f303609c338f06890cda7447123a4f0..923ff9e125f0490efba01f8d480d1f33c156c301 100644 --- a/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/receipts/open_audit_51935488.json +++ b/method_inputs/a1/S1_AnoGam_GabonAg1000G_1A17/receipts/open_audit_51935488.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AnoGam_GabonAg1000G_1A17/receipts/identity_scan_51935488.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AnoGam_GabonAg1000G_1A17/receipts/identity_scan_51935488.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AnoGam_GabonAg1000G_1A17/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_AnoGam_GabonAg1000G_1A17/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_AnoGam_GabonAg1000G_1A17/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_AnoGam_GabonAg1000G_1A17/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_AnoGam_GabonAg1000G_1A17/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "r", - 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"cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_AraTha_African3Epoch_1H18/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_AraTha_African3Epoch_1H18/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "c44bdff6e00b89e19c4398978c1870e793f5dd15e96cede24272aae1c70b4fe1", "canonical_id": "ac0cdc1ca94a9b07eadc04afb8e665fe47184010d12980b66092c4ee3c86cdda:00000006", @@ -50,7 +50,7 @@ "view.bcf": "23600e120c80c52e2926c4cb265dbb357c82efd89153397db17d7a691af4e046", "view.bcf.csi": "b42d6a6906f8f07bd39940822afb0b3547b557ef63b20a2655e247c4b478e4a9" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AraTha_African3Epoch_1H18/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AraTha_African3Epoch_1H18/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "4937d36b933f45cc929ee3efcd333adf3c26f3e8b6d6ba112a12d9e4c9f19243", "ladder_columns": [ 60, diff --git a/method_inputs/a1/S1_AraTha_African3Epoch_1H18/r00000007/n32/meta.json b/method_inputs/a1/S1_AraTha_African3Epoch_1H18/r00000007/n32/meta.json index 6c6b37107f819a3eb3bb0820bc3f156faf0836a7..f6c0180754eb4f91eef4ed3107d6ebb5bd53a409 100644 --- a/method_inputs/a1/S1_AraTha_African3Epoch_1H18/r00000007/n32/meta.json +++ b/method_inputs/a1/S1_AraTha_African3Epoch_1H18/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 924370, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_AraTha_African3Epoch_1H18/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_AraTha_African3Epoch_1H18/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "c44bdff6e00b89e19c4398978c1870e793f5dd15e96cede24272aae1c70b4fe1", "canonical_id": "ac0cdc1ca94a9b07eadc04afb8e665fe47184010d12980b66092c4ee3c86cdda:00000007", @@ -50,7 +50,7 @@ "view.bcf": "44b061d3250b06ea474d07c07dcf9cac0e7f1a09ce032bacf222bc5905a8f382", "view.bcf.csi": "88cbc50cdd8db922e953d6c3767e7b8ac565ccea7475b729aa023840874bb366" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AraTha_African3Epoch_1H18/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AraTha_African3Epoch_1H18/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "4937d36b933f45cc929ee3efcd333adf3c26f3e8b6d6ba112a12d9e4c9f19243", "ladder_columns": [ 31, diff --git a/method_inputs/a1/S1_AraTha_African3Epoch_1H18/receipts/export_51940045.json b/method_inputs/a1/S1_AraTha_African3Epoch_1H18/receipts/export_51940045.json index b506c14b73ebd2232a475a2876583325005a1945..b31cb5d006d2ed3ff5b2efc600ad7d164752e955 100644 --- a/method_inputs/a1/S1_AraTha_African3Epoch_1H18/receipts/export_51940045.json +++ b/method_inputs/a1/S1_AraTha_African3Epoch_1H18/receipts/export_51940045.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_S1_AraTha_African3Epoch_1H18", "host": "cn604-18", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AraTha_African3Epoch_1H18/receipts/identity_scan_51940045.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AraTha_African3Epoch_1H18/receipts/identity_scan_51940045.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "cddb34a869eb84176f50e53186503f8676491d99df756527865a81f123c98641" + "sha256": "998ce1af15fea8a1479dcf4c8db18c3b9c2151d2b653d1a55bb244a848ab0368" }, "job": "51940045", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AraTha_African3Epoch_1H18/receipts/open_audit_51940045.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AraTha_African3Epoch_1H18/receipts/open_audit_51940045.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c44bdff6e00b89e19c4398978c1870e793f5dd15e96cede24272aae1c70b4fe1", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AraTha_African3Epoch_1H18/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AraTha_African3Epoch_1H18/r00000000/n32", "files": { "multihetsep.txt": "30441e887a1ae4bdaed5da9efa061428c62dbd7631f28fc75f5a0b0f1cf10a06", "phlash_contig.npz": "6b45fb4042ea83de4e6ae7a51ffa162e2051083af029d60cb70cf01ce498bc6b", @@ -54,7 +54,7 @@ "view.bcf": "8661ab81a37ece4271fac3e3e014a191d464a5d0dbfc98afac6544674ea67045", "view.bcf.csi": "176dac754075e84904663e888f371372c14f0fc73cc7349860e6ee72e5aede53" }, - "meta_sha256": "0c4def8883643c2d29568c9e385061bb6eed2ddfe4bfa2947746b9e417891a76", + "meta_sha256": "aed5c5c579264f56bd48ccf6ecb376a01d651bcaab52ccd751c84dec1d3fe868", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c44bdff6e00b89e19c4398978c1870e793f5dd15e96cede24272aae1c70b4fe1", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AraTha_African3Epoch_1H18/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AraTha_African3Epoch_1H18/r00000001/n32", "files": { "multihetsep.txt": "1ce3020ba14039ca89b75b1ab656a8cb78f6a11148941678f556a2ebfda84b9e", "phlash_contig.npz": "b3037c143b81e1afec07ff115eeb9090dd9b562c01fdf2bc16e213af2a692421", @@ -93,7 +93,7 @@ "view.bcf": "f03b150557722df51386a7dc581b033fdf6db3937bc71ff466ab38aac40bae55", "view.bcf.csi": "24f88443f0964019217bf5d068fa0c64ecdfbc317eaeff117ff8d0bcef815e34" }, - "meta_sha256": "5d0a2b3118900be5bf7b357720255af64a911d9a71df49128ebd39983ed7fc36", + "meta_sha256": "7f203f2de278dfe36792d72724ead3bf7a786500c369796b205b226cc6399b14", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c44bdff6e00b89e19c4398978c1870e793f5dd15e96cede24272aae1c70b4fe1", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AraTha_African3Epoch_1H18/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AraTha_African3Epoch_1H18/r00000002/n32", "files": { "multihetsep.txt": "16c2ec629cad20d5264d1f7cf147fb44f8833270f18318e198be01e3a98a5b16", "phlash_contig.npz": "0f1c907d1a330c9acca5fc53cae35aab0ea3807ee927424682e0fa4cb831b0f6", @@ -132,7 +132,7 @@ "view.bcf": "8028aca5c1d462928336a982d72dde152e3a8e3be8d0196d40def4e6145bf379", "view.bcf.csi": "2022e12c9483c37ec739f8f3e9b14924ccb257962b98fad48085e4f9afaaf3df" }, - "meta_sha256": "1267a81ac0b19d5cb58ec96a2478169559f0aa8686b40ded095b0a8fc5efd5c0", + "meta_sha256": "e6aa64f77851ac8aeed6dfd6cf09ec6ea25a268e0dc02c96090fd8b4a0cccc19", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c44bdff6e00b89e19c4398978c1870e793f5dd15e96cede24272aae1c70b4fe1", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AraTha_African3Epoch_1H18/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AraTha_African3Epoch_1H18/r00000003/n32", "files": { "multihetsep.txt": "7f36d9def77a86ea3bc496dcbd2f9d20eac038639776be55119f5a3948ec6154", "phlash_contig.npz": "ed517de0da6b95aa8e1a118c5dd9af474bad460acea7cd3bf86a2a9bc01f48af", @@ -171,7 +171,7 @@ "view.bcf": "8d71e1c3c7afba1735d4fabeda9ae89c3708f053fbc5c1c64f03416d49dc5735", "view.bcf.csi": "84c6d39d8e1b6fa4fd406556ad3d1ca03cdf23f7d9607299653921bb92e4737c" }, - "meta_sha256": "0763045e527a5d25fccc49177aa4ab54fe4c188ad3e2df065986e318986d7279", + "meta_sha256": "e2b6599a7b0b8065c224e39c3875a033c8f25eb2c0dacc253956778238fe06c3", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c44bdff6e00b89e19c4398978c1870e793f5dd15e96cede24272aae1c70b4fe1", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AraTha_African3Epoch_1H18/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AraTha_African3Epoch_1H18/r00000004/n32", "files": { "multihetsep.txt": "2847ca203304ded68d20b345904d5003ca8c8000ff226435d02bcd20f8b60722", "phlash_contig.npz": "9d2ebebc694f4cf64fa9e4da66aed8043ec6b773e39b368b91098d2a4a9e76c3", @@ -210,7 +210,7 @@ "view.bcf": "a9d7bfe8f2c50ab4bb9098b4c5c71f553b0d00a2af37c2b5b079725cb6c8f670", "view.bcf.csi": "e62c0aa92f09208e7fe10245e378dfb33d2e4d735184320518ab7dce4fa1a5c2" }, - "meta_sha256": "7f21ab6fff15a2e2d89b7cae5bb1e8d6a7608b0b93b26409531dfb3db2c27ea9", + "meta_sha256": "f9255ec13655cac0056e6875a7bd26e19db7d92d3bed73edee7a65aa826a3b5c", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c44bdff6e00b89e19c4398978c1870e793f5dd15e96cede24272aae1c70b4fe1", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AraTha_African3Epoch_1H18/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AraTha_African3Epoch_1H18/r00000005/n32", "files": { "multihetsep.txt": "07d4abef4be7003c5445c14a57657f0bb35612122850065dab7291fc6c762156", "phlash_contig.npz": "fd88d3504f3ce4707da710e843423d975f33adf0e3f27f9cee735ca654bf181c", @@ -249,7 +249,7 @@ "view.bcf": "5eb771d723e8877cea8a5444e1a7a81ab51706a93594e655083e07026c096909", "view.bcf.csi": "420b26a47fa9245d5b819bd7d42e306152a0b116703fc9057a9486ca9b28b7ba" }, - "meta_sha256": "1b3db2c862419d920de2ef59a5cd6b5b55b4969e0f7b6976c32e083fed185448", + "meta_sha256": "fefde1047915ffd63383dd14c9e5dd0be402c31f8b42682678a2b0bf06f429ab", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c44bdff6e00b89e19c4398978c1870e793f5dd15e96cede24272aae1c70b4fe1", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AraTha_African3Epoch_1H18/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AraTha_African3Epoch_1H18/r00000006/n32", "files": { "multihetsep.txt": "08836afd279bfa353b54297a326419d4e0b2e2be506047b174b54c731cc2487d", "phlash_contig.npz": "3da3fb85838ea49acabc0d8d28a9ad44f5f84075c3f50a3cf3129ec5a9838f4f", @@ -288,7 +288,7 @@ "view.bcf": "23600e120c80c52e2926c4cb265dbb357c82efd89153397db17d7a691af4e046", "view.bcf.csi": "b42d6a6906f8f07bd39940822afb0b3547b557ef63b20a2655e247c4b478e4a9" }, - "meta_sha256": "37642521321d2c5fa08b48a0ed50b37191ee71fc15f0e6a99de06a7269e4d711", + "meta_sha256": "3b80d2b158a54d50850a0a85a56e1c5809dbb37c18a8b5428b72c48deee30ef1", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c44bdff6e00b89e19c4398978c1870e793f5dd15e96cede24272aae1c70b4fe1", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AraTha_African3Epoch_1H18/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AraTha_African3Epoch_1H18/r00000007/n32", "files": { "multihetsep.txt": "9703e16aa6432f3ec8e9ecd6d370e9542f3a93e383c8b01d108616e1969213a1", "phlash_contig.npz": "2d4281549b4311fb9e0098b0748498f0f5ebd54ac85ffb8ade2ced6ff1d1535a", @@ -327,7 +327,7 @@ "view.bcf": "44b061d3250b06ea474d07c07dcf9cac0e7f1a09ce032bacf222bc5905a8f382", "view.bcf.csi": "88cbc50cdd8db922e953d6c3767e7b8ac565ccea7475b729aa023840874bb366" }, - "meta_sha256": "8ec352d1a17d1cf0a7d5b5ee53bdda26140a47f1f6f228b693eb67138046bc00", + "meta_sha256": "289aa6906072b7de1ee2a08f9360694d3618a5bfaac172e75944c438cd9ade32", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/S1_AraTha_African3Epoch_1H18/receipts/identity_scan_51940045.json b/method_inputs/a1/S1_AraTha_African3Epoch_1H18/receipts/identity_scan_51940045.json index dca58316e7d43b7c6084062ca68525987b8693bf..80bd83999c493b63f36cfa54e538823e94cad26f 100644 --- a/method_inputs/a1/S1_AraTha_African3Epoch_1H18/receipts/identity_scan_51940045.json +++ b/method_inputs/a1/S1_AraTha_African3Epoch_1H18/receipts/identity_scan_51940045.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "ac0cdc1ca94a9b07eadc04afb8e665fe47184010d12980b66092c4ee3c86cdda" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T12:12:13Z" diff --git a/method_inputs/a1/S1_AraTha_African3Epoch_1H18/receipts/open_audit_51940045.json b/method_inputs/a1/S1_AraTha_African3Epoch_1H18/receipts/open_audit_51940045.json index bec58aee6e0e04231cb691b78df83485a3d56a64..ee9fbdd2124d5ec3192bc4a6ce5f69538077042b 100644 --- a/method_inputs/a1/S1_AraTha_African3Epoch_1H18/receipts/open_audit_51940045.json +++ b/method_inputs/a1/S1_AraTha_African3Epoch_1H18/receipts/open_audit_51940045.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - 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"fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "4844334a2b3692fbd305dafddf9f9822f31b32695b584cc9b9286cf4c5589ae7", "ladder_columns": [ 23, diff --git a/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/r00000003/n32/meta.json b/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/r00000003/n32/meta.json index 2e9ce7baf053180e680d6d42ecfeb076e3a8ee63..d16110a83bd84555673c788f4b7b4d03975456d3 100644 --- a/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/r00000003/n32/meta.json +++ b/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 734974, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "509dbec68daa162b49a0bd7856810b70241d0381beee4e6d792845e41ca958b2", "canonical_id": "2237ac83c348c2fa3ac7b0c80ae77b3c42aac174109967ebf7e902fdaf99fd88:00000003", @@ -50,7 +50,7 @@ "view.bcf": "46bc0d75c3d78bf09e12ca1b85f1cdc140d8f5a623a9172587debce0810fc25b", "view.bcf.csi": "53354dd8dba6912994affd9f71d05fdf7bc36efa89d58bf9193807e34fa778c3" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "4844334a2b3692fbd305dafddf9f9822f31b32695b584cc9b9286cf4c5589ae7", "ladder_columns": [ 35, diff --git a/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/r00000004/n32/meta.json b/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/r00000004/n32/meta.json index d3347653e1633f50ffa5800ac1214fec55cd39c6..e0cf64e957f1c3224fb98c159fafa98f60060e03 100644 --- a/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/r00000004/n32/meta.json +++ b/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 730898, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "509dbec68daa162b49a0bd7856810b70241d0381beee4e6d792845e41ca958b2", "canonical_id": "2237ac83c348c2fa3ac7b0c80ae77b3c42aac174109967ebf7e902fdaf99fd88:00000004", @@ -50,7 +50,7 @@ "view.bcf": "c582deba3993ac5b3ccf3ae3135056a248d485000121e2ee8d8a9a4baf8bb16d", "view.bcf.csi": "583294d7bd77fd3a100f5638494ec068148698f857d64720f4cd4e49965a970d" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "839861b971a736a91ab7e5e77f5e0996203adffcaef1b1c8e5333affe6d70630", "ladder_columns": [ 22, diff --git a/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/r00000005/n32/meta.json b/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/r00000005/n32/meta.json index 0b4f7d121b35b3d704c8b33441cf3f7c4d46c505..853fb4872d5b0c1d85496d29e502703749255c18 100644 --- a/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/r00000005/n32/meta.json +++ b/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 731236, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "509dbec68daa162b49a0bd7856810b70241d0381beee4e6d792845e41ca958b2", "canonical_id": "2237ac83c348c2fa3ac7b0c80ae77b3c42aac174109967ebf7e902fdaf99fd88:00000005", @@ -50,7 +50,7 @@ "view.bcf": "55d10a2adbd4cdb143be34d0eb0c9e1886bd91ac92c3b96cb3f33aa8c537d4e2", "view.bcf.csi": "ae5e859f338d9c094a2ae937a159bcdaf428d8d1037a5d74542a59e5e0a32f91" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "839861b971a736a91ab7e5e77f5e0996203adffcaef1b1c8e5333affe6d70630", "ladder_columns": [ 8, diff --git a/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/r00000006/n32/meta.json b/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/r00000006/n32/meta.json index 2f72845a8bad710d5fb8f8877a00171171e1bfc8..8a8f03e158aefc92e607ed082d89dabb70b8736b 100644 --- a/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/r00000006/n32/meta.json +++ b/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 736245, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "509dbec68daa162b49a0bd7856810b70241d0381beee4e6d792845e41ca958b2", "canonical_id": "2237ac83c348c2fa3ac7b0c80ae77b3c42aac174109967ebf7e902fdaf99fd88:00000006", @@ -50,7 +50,7 @@ "view.bcf": "cb9ffa75b9bb563ff7bd25a1a01a2c11df0c58d43d7566efb506766e668d2c09", "view.bcf.csi": "be67e40fd5ab93776f13d4cf43694484c64f600afd08cb227f68cd8f58404b57" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "839861b971a736a91ab7e5e77f5e0996203adffcaef1b1c8e5333affe6d70630", "ladder_columns": [ 60, diff --git a/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/r00000007/n32/meta.json b/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/r00000007/n32/meta.json index 540dc8ebdec2879d2076a6770f374739ca120099..528fc0da8a54a1476782fa2ffc1ccc39d5b96c47 100644 --- a/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/r00000007/n32/meta.json +++ b/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 734476, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "509dbec68daa162b49a0bd7856810b70241d0381beee4e6d792845e41ca958b2", "canonical_id": "2237ac83c348c2fa3ac7b0c80ae77b3c42aac174109967ebf7e902fdaf99fd88:00000007", @@ -50,7 +50,7 @@ "view.bcf": "682b7ca4e65119c4bbdbaa21a40b99123c029a5d079b0f1aefc1f6789cdc144e", "view.bcf.csi": "077732afad1fff81f793ccf7f740c3fa12ddd69358ee83da30852d1a731180bc" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "839861b971a736a91ab7e5e77f5e0996203adffcaef1b1c8e5333affe6d70630", "ladder_columns": [ 31, diff --git a/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/receipts/export_51935490.json b/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/receipts/export_51935490.json index 2138894059dcef9af1874d2f3c317c78814a438d..ab7de07e4703242ed0a9f54b7236c21d1b62a4e9 100644 --- a/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/receipts/export_51935490.json +++ b/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/receipts/export_51935490.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_S1_AraTha_SouthMiddleAtlas_1D17", "host": "cn504-11", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/receipts/identity_scan_51935490.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/receipts/identity_scan_51935490.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "9910b6f8c439e2423569f661824eb09da72beca8cb1a3198200c2fc604504dad" + "sha256": "50f7ea5f3577b8a603997598cbf8a3881091718e975c1600dc571da6d45824e6" }, "job": "51935490", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/receipts/open_audit_51935490.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/receipts/open_audit_51935490.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "509dbec68daa162b49a0bd7856810b70241d0381beee4e6d792845e41ca958b2", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/r00000000/n32", "files": { "multihetsep.txt": "36d7ee0ba641c048850a7f1bb0eb77ba8ed1a9577dc84142d6d9a8af7d1037d6", "phlash_contig.npz": "2647af8eb915927a7cc0635234299208a3bd96c03d7ee62b2afc85e6e8a134ac", @@ -54,7 +54,7 @@ "view.bcf": "561a8f9324595065bbbda4f3b91e0cf83a8bab66ec4802864781e7da68b32e76", "view.bcf.csi": "90627c0b28cf0174b34843ce107ac32b02bfde643ce6d2a48fc56939504f10e7" }, - "meta_sha256": "850c0d571968b7807ec2dd617017b3f0483e025f51411becd8843e77dfe09540", + "meta_sha256": "e49f25a684f163781b388ab413f5a51a5324064cf26f12fc0bff59a9ba87603a", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "509dbec68daa162b49a0bd7856810b70241d0381beee4e6d792845e41ca958b2", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/r00000001/n32", "files": { "multihetsep.txt": "fe053462d44a1e897f41ffec5fd847d8e46954b841e5c60e8e45773b8796d0dc", "phlash_contig.npz": "841421b0bb877df1cc6e1085d8e5dcec25f796f5ba49b187943b33e16d3f8d28", @@ -93,7 +93,7 @@ "view.bcf": "3f013671cc0911660e2e12991e897a09d1be0a29ed99983cf258b65a5bb53943", "view.bcf.csi": "75ade916cbcfd8cb21e5db6ca3b52d7108bc36228859d08a64dd16b2b35107d2" }, - "meta_sha256": "ba4204ef062746c93db42640cdbd7a02be97b7c09cc675a6ac669ad3a6ed0e48", + "meta_sha256": "23107000f87da8b13148419b689471de490262d902e7b95421a684bd45a8a81d", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "509dbec68daa162b49a0bd7856810b70241d0381beee4e6d792845e41ca958b2", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/r00000002/n32", "files": { "multihetsep.txt": "589c17cfe0cba7509e77500f4cd8054d038e73a3172a338650895928f6443419", "phlash_contig.npz": "a84f57e51c3728521df01243e8e8170bd7cf926067dd2f72eaaef42470cc0e28", @@ -132,7 +132,7 @@ "view.bcf": "21a604b3a700b97f832817db380ef38d86007af2d1f4f2798ddc9be41c0158f2", "view.bcf.csi": "7494b1cf950d43d54a8c4e75750b905439131eaf1d7f1c678b2e52dc4f7b6b34" }, - "meta_sha256": "e7fb77406f8f09bd47106a07fb32cd8b0c031c60813d0fb9051f72d44aebd231", + "meta_sha256": "1deca199a1e7758471d7e385dd33e7c1645d1307ecd61a0778234b02f7f268ba", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "509dbec68daa162b49a0bd7856810b70241d0381beee4e6d792845e41ca958b2", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/r00000003/n32", "files": { "multihetsep.txt": "ba9cae640fa5aaf2adeab87b8ac4327220bca2c8db2ba46da88448b0c2980b94", "phlash_contig.npz": "cc08f4bc56aa762ffe2b1394ad26d77fb0d542c525c566b0fa609449feba7692", @@ -171,7 +171,7 @@ "view.bcf": "46bc0d75c3d78bf09e12ca1b85f1cdc140d8f5a623a9172587debce0810fc25b", "view.bcf.csi": "53354dd8dba6912994affd9f71d05fdf7bc36efa89d58bf9193807e34fa778c3" }, - "meta_sha256": "03e8b99a483c46b23324c6ba9d61884b59bb1f2b04b53932d0433bea067c49a6", + "meta_sha256": "e7512cb9e0adfc69c0264b5ba6689d70278ea07c9a4cc64c736658b90317c8a8", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "509dbec68daa162b49a0bd7856810b70241d0381beee4e6d792845e41ca958b2", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/r00000004/n32", "files": { "multihetsep.txt": "3ce130e3a9613547051f24b0eb99cd7448387a34b0dfb37d93f3decca0c75b27", "phlash_contig.npz": "4867b716a6108072eef590e9360211161fdb6a2e46fb9531be72be359f6bbd05", @@ -210,7 +210,7 @@ "view.bcf": "c582deba3993ac5b3ccf3ae3135056a248d485000121e2ee8d8a9a4baf8bb16d", "view.bcf.csi": "583294d7bd77fd3a100f5638494ec068148698f857d64720f4cd4e49965a970d" }, - "meta_sha256": "fc3181250d843c9a9b0bf2f362efc753f5604a3c149090259456d0a287c1c838", + "meta_sha256": "9f69f3a4ae02929690a0a0f33352860f42a97631d467375ef736875bbd84cebf", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "509dbec68daa162b49a0bd7856810b70241d0381beee4e6d792845e41ca958b2", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/r00000005/n32", "files": { "multihetsep.txt": "8be25a149a98ac1d16585ba02ec3340803b0056721808bfaa0ecf26c6f3545af", "phlash_contig.npz": "136a18ecd5c5f4871af83989eb7a4b8e4a695fb20427d65180f88ca780cc2770", @@ -249,7 +249,7 @@ "view.bcf": "55d10a2adbd4cdb143be34d0eb0c9e1886bd91ac92c3b96cb3f33aa8c537d4e2", "view.bcf.csi": "ae5e859f338d9c094a2ae937a159bcdaf428d8d1037a5d74542a59e5e0a32f91" }, - "meta_sha256": "28712d17faff1ebd26e070c4567e27f2e842a36024b65755092491ecd329045f", + "meta_sha256": "e78af62d77ee3dc5642d1a5ecb083c9afc4bb18786bb3bbff3009bf28d346782", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "509dbec68daa162b49a0bd7856810b70241d0381beee4e6d792845e41ca958b2", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/r00000006/n32", "files": { "multihetsep.txt": "8f6d97eb3d1281d950b2e3dff7eee6e0e137943cdc94281aaf91d8c256596cfd", "phlash_contig.npz": "0787fa4d938c3d26bffe1960f4a23a691b564b4ce44ddad1d81894d360390e10", @@ -288,7 +288,7 @@ "view.bcf": "cb9ffa75b9bb563ff7bd25a1a01a2c11df0c58d43d7566efb506766e668d2c09", "view.bcf.csi": "be67e40fd5ab93776f13d4cf43694484c64f600afd08cb227f68cd8f58404b57" }, - "meta_sha256": "70f3f2f5dba12416cd81134aee9af9b2c6c81b0ee4b5c0befc3e1b879a8bc630", + "meta_sha256": "0036d73d693220bacca4edc32073a2749e941b59819faf5d439e339478077127", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "509dbec68daa162b49a0bd7856810b70241d0381beee4e6d792845e41ca958b2", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/r00000007/n32", "files": { "multihetsep.txt": "4eb6d485db077132e1d503a990391b71dd011d6718ba4946059badb262f0b0f2", "phlash_contig.npz": "e83225da639268b4bd7f47398aad4610e59f0f5717246062b1f6eac30b07c6f2", @@ -327,7 +327,7 @@ "view.bcf": "682b7ca4e65119c4bbdbaa21a40b99123c029a5d079b0f1aefc1f6789cdc144e", "view.bcf.csi": "077732afad1fff81f793ccf7f740c3fa12ddd69358ee83da30852d1a731180bc" }, - "meta_sha256": "30cab05ffff31acfe349df53782d7bdf93406b720619d73b7311b29fc9a5516e", + "meta_sha256": "f9395ad7baf4559b58bc025db8e299304d09b5491904a38378bbff84c7f72f5f", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/receipts/identity_scan_51935490.json b/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/receipts/identity_scan_51935490.json index 5fe70250aafd85511dd0f8bac93ec58ffbb07fd6..4afd16e7d6b585a8831cc3457e66fccea4c2829c 100644 --- a/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/receipts/identity_scan_51935490.json +++ b/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/receipts/identity_scan_51935490.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "2237ac83c348c2fa3ac7b0c80ae77b3c42aac174109967ebf7e902fdaf99fd88" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T12:00:43Z" diff --git a/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/receipts/open_audit_51935490.json b/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/receipts/open_audit_51935490.json index 96cbdb8f3d1583a166bef0a460f3a12daf330740..21884243378997d667a7ea96cb4f299a6bf40887 100644 --- a/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/receipts/open_audit_51935490.json +++ b/method_inputs/a1/S1_AraTha_SouthMiddleAtlas_1D17/receipts/open_audit_51935490.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/receipts/identity_scan_51935490.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/receipts/identity_scan_51935490.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_AraTha_SouthMiddleAtlas_1D17/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "r", - 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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/events.log" + "path": "$WORK/bench_h2h_20260915/events.log" } ], "purposes": [ diff --git a/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000000/n32/meta.json b/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000000/n32/meta.json index 90107362a01df2acf2e032f567407f8725ce726d..4f0ee50d15f457212edaf6eafb24854641f6eee9 100644 --- a/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000000/n32/meta.json +++ b/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000000/n32/meta.json @@ -2,7 +2,7 @@ "S": 129641, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_BosTau_HolsteinFriesian_1M13/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_BosTau_HolsteinFriesian_1M13/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "3b0e7c1c47921dae04cd028488a42b89db360b5f64d078e8fb40ce198b0ed540", "canonical_id": "6e49b171dc8d83f55dc8fd6fecc5300233885553eb0272f3d75f854e6ba87a09:00000000", @@ -50,7 +50,7 @@ "view.bcf": "945441664065c072ffb887162a87c6ea6d45ad1530ab42501be19059d6c293c1", "view.bcf.csi": "f69e05cc42f46d39dae3f2219a6ae1a2d574c9af214878e166b4c3d2cf209c6c" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "bb3b5560716a90638b521b65adb486c16cca1bb3cbb0f42fc09c74deb36a0cbb", "ladder_columns": [ 39, diff --git a/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000001/n32/meta.json b/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000001/n32/meta.json index 381f6342d4b633a47e85e5873908da70c11b783c..9ae37383ac6675ac2a4f0183f5f752c4d8d8fcd3 100644 --- a/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000001/n32/meta.json +++ b/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 130147, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_BosTau_HolsteinFriesian_1M13/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_BosTau_HolsteinFriesian_1M13/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "3b0e7c1c47921dae04cd028488a42b89db360b5f64d078e8fb40ce198b0ed540", "canonical_id": "6e49b171dc8d83f55dc8fd6fecc5300233885553eb0272f3d75f854e6ba87a09:00000001", @@ -50,7 +50,7 @@ "view.bcf": "da288a1aa3343fc08cad725b2e6315b42b6881698c9df2b821f84932512f416f", "view.bcf.csi": "3c905342f85b80651620be3d2f97d62394bc4155bad32ae99467f0e00638a668" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "bb3b5560716a90638b521b65adb486c16cca1bb3cbb0f42fc09c74deb36a0cbb", "ladder_columns": [ 16, diff --git a/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000002/n32/meta.json b/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000002/n32/meta.json index 77949f2f6886d5baf81a79598858e207771b3f00..3741ad481b8f37a7f1f99848adce41693ad6230b 100644 --- a/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000002/n32/meta.json +++ b/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 132519, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_BosTau_HolsteinFriesian_1M13/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_BosTau_HolsteinFriesian_1M13/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "3b0e7c1c47921dae04cd028488a42b89db360b5f64d078e8fb40ce198b0ed540", "canonical_id": "6e49b171dc8d83f55dc8fd6fecc5300233885553eb0272f3d75f854e6ba87a09:00000002", @@ -50,7 +50,7 @@ "view.bcf": "cdde4bc4499ec9b916772b2d0939579b786da0aa198ac80539d9d46cebd9a5e5", "view.bcf.csi": "9ccf9b4fd4d70c29b23d13ed5601cf596ea2e55742064073fd5073fd71cc50d7" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "bb3b5560716a90638b521b65adb486c16cca1bb3cbb0f42fc09c74deb36a0cbb", "ladder_columns": [ 23, diff --git a/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000003/n32/meta.json b/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000003/n32/meta.json index 3ab1abe5ccbfae4c20ea3962c2ac77e2bc13cb7d..a3911a389eee282a68e6fd063938532ce9f8b9c5 100644 --- a/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000003/n32/meta.json +++ b/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 124287, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_BosTau_HolsteinFriesian_1M13/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_BosTau_HolsteinFriesian_1M13/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "3b0e7c1c47921dae04cd028488a42b89db360b5f64d078e8fb40ce198b0ed540", "canonical_id": "6e49b171dc8d83f55dc8fd6fecc5300233885553eb0272f3d75f854e6ba87a09:00000003", @@ -50,7 +50,7 @@ "view.bcf": "b530840b877a8fc23529eb4806cc31497042a0c471e1cdcd408393b01b089440", "view.bcf.csi": "fd6bf4610f90f8e762887d1a8d17cfdf7aa043e0d24347a6de193737a5cea7a7" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "bb3b5560716a90638b521b65adb486c16cca1bb3cbb0f42fc09c74deb36a0cbb", "ladder_columns": [ 35, diff --git a/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000004/n32/meta.json b/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000004/n32/meta.json index 30dc1b2f5a50123ea7a857fa6e12e9828ce22b1c..357bdfc36dfab187132e90d11c08155d5fb7576d 100644 --- a/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000004/n32/meta.json +++ b/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 132541, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_BosTau_HolsteinFriesian_1M13/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_BosTau_HolsteinFriesian_1M13/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "3b0e7c1c47921dae04cd028488a42b89db360b5f64d078e8fb40ce198b0ed540", "canonical_id": "6e49b171dc8d83f55dc8fd6fecc5300233885553eb0272f3d75f854e6ba87a09:00000004", @@ -50,7 +50,7 @@ "view.bcf": "e18fd8b5ca1098b2c694abb31b843aad39c61f652cc2789dbc6fe8cc417651bb", "view.bcf.csi": "4c591c4bdc1e1983544b1edb457111303ec65e06c8e4966146d9c01f9de3f05e" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "95c088b67e2a1d636675ae8355d0454e9e2e007bb7f606ca9567b4b4835eecc2", "ladder_columns": [ 22, diff --git a/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000005/n32/meta.json b/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000005/n32/meta.json index 38deceda0d186b7b16aa46edd8847bdbd96cf480..3e1d2f822f1905fbccf397be550810bbecb599ff 100644 --- a/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000005/n32/meta.json +++ b/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 128306, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_BosTau_HolsteinFriesian_1M13/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_BosTau_HolsteinFriesian_1M13/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "3b0e7c1c47921dae04cd028488a42b89db360b5f64d078e8fb40ce198b0ed540", "canonical_id": "6e49b171dc8d83f55dc8fd6fecc5300233885553eb0272f3d75f854e6ba87a09:00000005", @@ -50,7 +50,7 @@ "view.bcf": "fa817566f7dd8ed888f2f17fe3c2aa823192864bc711e4ac446611a827270480", "view.bcf.csi": "45ca29356ff230219871726272b0d59ff53305c8e96ae1b81842bb6e341534dd" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "95c088b67e2a1d636675ae8355d0454e9e2e007bb7f606ca9567b4b4835eecc2", "ladder_columns": [ 8, diff --git a/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000006/n32/meta.json b/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000006/n32/meta.json index 040178801e9da6022efe07b40e7b9094b7c40046..a0130425c19df8925b2d30105470b029703adec2 100644 --- a/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000006/n32/meta.json +++ b/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 134895, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_BosTau_HolsteinFriesian_1M13/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_BosTau_HolsteinFriesian_1M13/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "3b0e7c1c47921dae04cd028488a42b89db360b5f64d078e8fb40ce198b0ed540", "canonical_id": "6e49b171dc8d83f55dc8fd6fecc5300233885553eb0272f3d75f854e6ba87a09:00000006", @@ -50,7 +50,7 @@ "view.bcf": "39918741fa6d8b86796e698cd17dca1a0fa461c72edf67ba9d2a187668f82d12", "view.bcf.csi": "c4893fae2a9d9c0590e90884fc24b4ea79a7f342d901b4a1e3719a82eda68d39" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "95c088b67e2a1d636675ae8355d0454e9e2e007bb7f606ca9567b4b4835eecc2", "ladder_columns": [ 60, diff --git a/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000007/n32/meta.json b/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000007/n32/meta.json index 004e026ffd2258ff9082eacd63e6e8ec551b9e26..31fc924a7ba36a8e1e238e5b4a94364619ac0fd3 100644 --- a/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000007/n32/meta.json +++ b/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 134925, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_BosTau_HolsteinFriesian_1M13/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_BosTau_HolsteinFriesian_1M13/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "3b0e7c1c47921dae04cd028488a42b89db360b5f64d078e8fb40ce198b0ed540", "canonical_id": "6e49b171dc8d83f55dc8fd6fecc5300233885553eb0272f3d75f854e6ba87a09:00000007", @@ -50,7 +50,7 @@ "view.bcf": "7f0061adf8c4982f38630d772c007e5b7739e0f2709f64a15e7c88dfe1e358ca", "view.bcf.csi": "56e7c932840aa9edc72e7bd29e645da33df24ecd6848f694f741e1cac53f086a" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "95c088b67e2a1d636675ae8355d0454e9e2e007bb7f606ca9567b4b4835eecc2", "ladder_columns": [ 31, diff --git a/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/receipts/export_51933150.json b/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/receipts/export_51933150.json index 6d4d52570863871b0dc67b2042d8e7787585bea2..f37efb5259b5e3577a01a8d2767312271f8640a0 100644 --- a/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/receipts/export_51933150.json +++ b/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/receipts/export_51933150.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_S1_BosTau_HolsteinFriesian_1M13", "host": "cn604-18", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_BosTau_HolsteinFriesian_1M13/receipts/identity_scan_51933150.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_S1_BosTau_HolsteinFriesian_1M13/receipts/identity_scan_51933150.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "3a17bf335d923b80d273d50d42e79f118a8e8d6c67f9d2061c5359f605cc98f3" + "sha256": "5fcbb938f25368295dd548b511956d5d9a393f3e4a62dfd96b9f7d5fe111067d" }, "job": "51933150", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_BosTau_HolsteinFriesian_1M13/receipts/open_audit_51933150.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_S1_BosTau_HolsteinFriesian_1M13/receipts/open_audit_51933150.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3b0e7c1c47921dae04cd028488a42b89db360b5f64d078e8fb40ce198b0ed540", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_BosTau_HolsteinFriesian_1M13/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_BosTau_HolsteinFriesian_1M13/r00000000/n32", "files": { "multihetsep.txt": "a1f7db1b3d830a1b1b676c9f1ea5fa9a4de11d2c9ae103f39872299a807bd723", "phlash_contig.npz": "ca426b59cb430093cbbc885254474600ae6e773680efd59c985c99227bbbac01", @@ -54,7 +54,7 @@ "view.bcf": "945441664065c072ffb887162a87c6ea6d45ad1530ab42501be19059d6c293c1", "view.bcf.csi": "f69e05cc42f46d39dae3f2219a6ae1a2d574c9af214878e166b4c3d2cf209c6c" }, - "meta_sha256": "ce6c8a11a633755ff93d3dfe44dc553f3d5b5dcff3891ee0696b212e6d0c80ca", + "meta_sha256": "a0641fd5e5404e0efb1924e49dbdc4834a4cac0c36ebcc39d662e54204b622be", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3b0e7c1c47921dae04cd028488a42b89db360b5f64d078e8fb40ce198b0ed540", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_BosTau_HolsteinFriesian_1M13/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_BosTau_HolsteinFriesian_1M13/r00000001/n32", "files": { "multihetsep.txt": "629bbd81d67a4127fdf2435a0d1351a5fa813031cef148a63c3c2b40da9aeee4", "phlash_contig.npz": "cc323d6c5f69239b2728cbe482916d402323a4088429ac27c24ab12318e33c11", @@ -93,7 +93,7 @@ "view.bcf": "da288a1aa3343fc08cad725b2e6315b42b6881698c9df2b821f84932512f416f", "view.bcf.csi": "3c905342f85b80651620be3d2f97d62394bc4155bad32ae99467f0e00638a668" }, - "meta_sha256": "28c0ac868e386b13a8fe328313df542ba2a03474cd963d976078a5274f9d47b0", + "meta_sha256": "8f6228304145e4cd6b7d30d2a3cbe3e60faab8fdcf8f90da89562deebeec004d", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3b0e7c1c47921dae04cd028488a42b89db360b5f64d078e8fb40ce198b0ed540", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_BosTau_HolsteinFriesian_1M13/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_BosTau_HolsteinFriesian_1M13/r00000002/n32", "files": { "multihetsep.txt": "cbdbed4a2d3841d04f69c35e53f9485ae9687cbc5d479bfbe1187b85229e47a6", "phlash_contig.npz": "18b89dd8e89f7c9910446730d1f50dd984a720157cc4f16a8b9c0de656959bcc", @@ -132,7 +132,7 @@ "view.bcf": "cdde4bc4499ec9b916772b2d0939579b786da0aa198ac80539d9d46cebd9a5e5", "view.bcf.csi": "9ccf9b4fd4d70c29b23d13ed5601cf596ea2e55742064073fd5073fd71cc50d7" }, - "meta_sha256": "5964c76acf7cf6b7b7618cfbeebacdf415cbbff31be2ff709bc62613abeffd57", + "meta_sha256": "c5ccab4847463b990420589377b58cbf51440f47f5b6030571d54ff4b699732e", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3b0e7c1c47921dae04cd028488a42b89db360b5f64d078e8fb40ce198b0ed540", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_BosTau_HolsteinFriesian_1M13/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_BosTau_HolsteinFriesian_1M13/r00000003/n32", "files": { "multihetsep.txt": "a193ad6c7750580e6ba5d520e7f2371f15527f341bc12259727c1ce668ca2771", "phlash_contig.npz": "fd66d80226020ca7e66572c4fc657bb778315b21b31bbb0a1f43bb5ab70dd88a", @@ -171,7 +171,7 @@ "view.bcf": "b530840b877a8fc23529eb4806cc31497042a0c471e1cdcd408393b01b089440", "view.bcf.csi": "fd6bf4610f90f8e762887d1a8d17cfdf7aa043e0d24347a6de193737a5cea7a7" }, - "meta_sha256": "ff6a2920cefaaf56d3e95230f36dbc01372c4a1b2a957d98dfd868437c82474b", + "meta_sha256": "e09b98f565529e8e3aaa867ae19e3d43e0a3a3da219e3a1fa7f29e38c62a5213", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3b0e7c1c47921dae04cd028488a42b89db360b5f64d078e8fb40ce198b0ed540", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_BosTau_HolsteinFriesian_1M13/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_BosTau_HolsteinFriesian_1M13/r00000004/n32", "files": { "multihetsep.txt": "ec78fdbc89d6f7ec8c2b796e53842460f6f7ddcc4f9bfceb11ec2543f2b48708", "phlash_contig.npz": "9362e9825b6d8cadfbbcca28027a58e45d461208de56b962a0cfc1c41faeb2a2", @@ -210,7 +210,7 @@ "view.bcf": "e18fd8b5ca1098b2c694abb31b843aad39c61f652cc2789dbc6fe8cc417651bb", "view.bcf.csi": "4c591c4bdc1e1983544b1edb457111303ec65e06c8e4966146d9c01f9de3f05e" }, - "meta_sha256": "2c3229ffc9ce19d09baa5c2a7ca69f5978d87ac0c38247ee459ef953495f9272", + "meta_sha256": "2fabfe8ffde787e4ebec3aad822ecf382c2d2933587a1fad49eaa0cd28903d39", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3b0e7c1c47921dae04cd028488a42b89db360b5f64d078e8fb40ce198b0ed540", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_BosTau_HolsteinFriesian_1M13/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_BosTau_HolsteinFriesian_1M13/r00000005/n32", "files": { "multihetsep.txt": "f81635cb50806af749f2ff071074088de7fd7e9afac9fdc2785bd7cf361a055e", "phlash_contig.npz": "a300792b464e6a14ce0338b2a6300f9734bfa9dcbfbf37c7e9adb826509dde41", @@ -249,7 +249,7 @@ "view.bcf": "fa817566f7dd8ed888f2f17fe3c2aa823192864bc711e4ac446611a827270480", "view.bcf.csi": "45ca29356ff230219871726272b0d59ff53305c8e96ae1b81842bb6e341534dd" }, - "meta_sha256": "309ce70c07ebcf1fec332d9d722ce1970c751501e5ef599a2ed3f533fa7b091f", + "meta_sha256": "17494c751dec95287c88b0d0f2359d081bb0e1f71f95dc2b4ca30b3e29549a98", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3b0e7c1c47921dae04cd028488a42b89db360b5f64d078e8fb40ce198b0ed540", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_BosTau_HolsteinFriesian_1M13/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_BosTau_HolsteinFriesian_1M13/r00000006/n32", "files": { "multihetsep.txt": "b66f276707564e22ba35968c6327fc8e28ce9f66eeabd59330a6d8294ff54f05", "phlash_contig.npz": "08d29ce621e0d3c76d211438babc22500263b0ee6cb858ad98f2c1821d9097ff", @@ -288,7 +288,7 @@ "view.bcf": "39918741fa6d8b86796e698cd17dca1a0fa461c72edf67ba9d2a187668f82d12", "view.bcf.csi": "c4893fae2a9d9c0590e90884fc24b4ea79a7f342d901b4a1e3719a82eda68d39" }, - "meta_sha256": "17625208eb830bf75f4b613249decfd252136e59f62e7385959a8494e34cd620", + "meta_sha256": "7c269f8c47dbf39c85e8cce455caa3ad8a310c650c863b5065d78459188f255a", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3b0e7c1c47921dae04cd028488a42b89db360b5f64d078e8fb40ce198b0ed540", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_BosTau_HolsteinFriesian_1M13/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_BosTau_HolsteinFriesian_1M13/r00000007/n32", "files": { "multihetsep.txt": "7cadea32dcadf51c4db95acb025caf79dd4613ae468ea9bb0c560296a92df7f1", "phlash_contig.npz": "254599507ead13ce35bdd7ed61f5d248436fca77cd837785a18e35bcc50c210f", @@ -327,7 +327,7 @@ "view.bcf": "7f0061adf8c4982f38630d772c007e5b7739e0f2709f64a15e7c88dfe1e358ca", "view.bcf.csi": "56e7c932840aa9edc72e7bd29e645da33df24ecd6848f694f741e1cac53f086a" }, - "meta_sha256": "bccbfdfc9d0c7e876197277348d62c660e53b5a02533cff90b05dbfb1dff8122", + "meta_sha256": "5e81998d6b70603378d7f04f327b74a6fe5838846cc7b7aecef6e109c325612b", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/receipts/identity_scan_51933150.json b/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/receipts/identity_scan_51933150.json index d41f6aff3b4b9adba5ec5718619ea207acc8eef3..3c7afab237a2067ff78062ac1accf4ff8ceec78e 100644 --- a/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/receipts/identity_scan_51933150.json +++ b/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/receipts/identity_scan_51933150.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "6e49b171dc8d83f55dc8fd6fecc5300233885553eb0272f3d75f854e6ba87a09" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T10:58:17Z" diff --git a/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/receipts/open_audit_51933150.json b/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/receipts/open_audit_51933150.json index 2779edbc76bc89b1e37e7d718e7b983f100e43fd..e2607942cf5f06e3b5dd2c7e3f95ec05d765cbc4 100644 --- a/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/receipts/open_audit_51933150.json +++ b/method_inputs/a1/S1_BosTau_HolsteinFriesian_1M13/receipts/open_audit_51933150.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_BosTau_HolsteinFriesian_1M13/receipts/identity_scan_51933150.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_S1_BosTau_HolsteinFriesian_1M13/receipts/identity_scan_51933150.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_BosTau_HolsteinFriesian_1M13/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_BosTau_HolsteinFriesian_1M13/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_BosTau_HolsteinFriesian_1M13/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_BosTau_HolsteinFriesian_1M13/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_BosTau_HolsteinFriesian_1M13/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "r", - 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"fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_DroMel_African3Epoch_1S16/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_DroMel_African3Epoch_1S16/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "b451354c5ae6711fe23fd6d691d57ef601e126a2da47d4e557c16fbaf14abd16", "ladder_columns": [ 8, diff --git a/method_inputs/a1/S1_DroMel_African3Epoch_1S16/r00000006/n32/meta.json b/method_inputs/a1/S1_DroMel_African3Epoch_1S16/r00000006/n32/meta.json index 24913efb3eaf21ce15a114501217cc911178968d..be0ee6f061080529665ea189456eee2c41d1bf32 100644 --- a/method_inputs/a1/S1_DroMel_African3Epoch_1S16/r00000006/n32/meta.json +++ b/method_inputs/a1/S1_DroMel_African3Epoch_1S16/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 2117448, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_DroMel_African3Epoch_1S16/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_DroMel_African3Epoch_1S16/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "5c32d955b52b50fc7727630719f634b6b50342b3abc97257fec8fae2b6327a23", "canonical_id": "c652534d8453c5bb8c4236a2427fe5c343f082d01e8e57c7156468c949eb1d0f:00000006", @@ -50,7 +50,7 @@ "view.bcf": "331b85c27f980944846b362d34a2249c2208473747211d170b169cb9b29d8fba", "view.bcf.csi": "689519420a62e2973f607f45f5d7f9b59f4d1d70d1a274e115e1a966e6b47dd9" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_DroMel_African3Epoch_1S16/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_DroMel_African3Epoch_1S16/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "b451354c5ae6711fe23fd6d691d57ef601e126a2da47d4e557c16fbaf14abd16", "ladder_columns": [ 60, diff --git a/method_inputs/a1/S1_DroMel_African3Epoch_1S16/r00000007/n32/meta.json b/method_inputs/a1/S1_DroMel_African3Epoch_1S16/r00000007/n32/meta.json index 62c9f4446bfb4bf4d300f81499df87af9fb77409..2fbb0d1caec3f00df42a784280a03ae4884f1d13 100644 --- a/method_inputs/a1/S1_DroMel_African3Epoch_1S16/r00000007/n32/meta.json +++ b/method_inputs/a1/S1_DroMel_African3Epoch_1S16/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 2120809, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_DroMel_African3Epoch_1S16/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_DroMel_African3Epoch_1S16/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "5c32d955b52b50fc7727630719f634b6b50342b3abc97257fec8fae2b6327a23", "canonical_id": "c652534d8453c5bb8c4236a2427fe5c343f082d01e8e57c7156468c949eb1d0f:00000007", @@ -50,7 +50,7 @@ "view.bcf": "75498fa1aa76beb8bbf3b2aa6753b3ce67586c0e70925b5df7e66db82b033a8d", "view.bcf.csi": "45245971851e8670a0c3273c9fb0f93e4dbe6b97bd091365bd8434d2c2353ced" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_DroMel_African3Epoch_1S16/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_DroMel_African3Epoch_1S16/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "b451354c5ae6711fe23fd6d691d57ef601e126a2da47d4e557c16fbaf14abd16", "ladder_columns": [ 31, diff --git a/method_inputs/a1/S1_DroMel_African3Epoch_1S16/receipts/export_51959168.json b/method_inputs/a1/S1_DroMel_African3Epoch_1S16/receipts/export_51959168.json index 4da35e3b293f79c088b62b81259ef5430cbe6606..9536c76f285ea6a5313008b0fc0fcfc3b06a8ca7 100644 --- a/method_inputs/a1/S1_DroMel_African3Epoch_1S16/receipts/export_51959168.json +++ b/method_inputs/a1/S1_DroMel_African3Epoch_1S16/receipts/export_51959168.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_S1_DroMel_African3Epoch_1S16", "host": "cn604-07", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_DroMel_African3Epoch_1S16/receipts/identity_scan_51959168.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_S1_DroMel_African3Epoch_1S16/receipts/identity_scan_51959168.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "6a7ef27b8ac9f8a10e896f9c4ef4b9fe8bcbf562ee6b7e4b138910d9de79d4db" + "sha256": "f9e11fa44a2187f1dde3327ce2245f0b94fcb4748b5ff7ea1ff7447fea84c530" }, "job": "51959168", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_DroMel_African3Epoch_1S16/receipts/open_audit_51959168.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_S1_DroMel_African3Epoch_1S16/receipts/open_audit_51959168.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "5c32d955b52b50fc7727630719f634b6b50342b3abc97257fec8fae2b6327a23", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_DroMel_African3Epoch_1S16/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_DroMel_African3Epoch_1S16/r00000000/n32", "files": { "multihetsep.txt": "12453fa5424d77877564bae76713bbcc0222e3166cb35700f8d5b5302bf195f6", "phlash_contig.npz": "a9c41f68e055a9020fffbce3ad74b2c835bef43cce73472742eb5fcceea732e1", @@ -54,7 +54,7 @@ "view.bcf": "3644a5c6edf7b5cce42ec11a1370de7fde447854a37fa1aa699bd482397f7b99", "view.bcf.csi": "a43557c0a4656826025856c7e02b3f1177bada101cf038260bcdfc2d76c07834" }, - "meta_sha256": "833a9862beb86a4451fe8c0f39af59bd7680871b09b05e4a18f43f93b7157e29", + "meta_sha256": "e33958e8206595d29af0fe0d78941ae97c598a34b095c422221ba1f5aab7e780", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "5c32d955b52b50fc7727630719f634b6b50342b3abc97257fec8fae2b6327a23", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_DroMel_African3Epoch_1S16/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_DroMel_African3Epoch_1S16/r00000001/n32", "files": { "multihetsep.txt": "8fd0fc761f124504e696c5f304ef75597696310b06ee5d34282c1321b059b6e7", "phlash_contig.npz": "9388f3aa18c5f9f69ec74837468c0733774b1833de878e55dfba9a80452ee245", @@ -93,7 +93,7 @@ "view.bcf": "9fe7a97a489965f634cd709969972789705c42bc86259428b4351ac435262263", "view.bcf.csi": "8c0404096ae16f4917f70db5d0a3563baa94df8a4506b224825c3abd91611c1c" }, - "meta_sha256": "5def5cc6083286e9b9cffad73ee85bf35c7779b15ade2bf4612ea1cccdca53e6", + "meta_sha256": "7e6bd999f7ebcc56ec1aa546f35c34f844fcb4f8b2efcea835c0c12e0da07efd", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "5c32d955b52b50fc7727630719f634b6b50342b3abc97257fec8fae2b6327a23", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_DroMel_African3Epoch_1S16/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_DroMel_African3Epoch_1S16/r00000002/n32", "files": { "multihetsep.txt": "499adc371a5793fd65f1d4d03ff8fc7e45a40494a3728f02b19b59327bdcf58a", "phlash_contig.npz": "41fcfe2449a7068676c712d4261c291225383bbcaf6ab706cce50b8709d642a3", @@ -132,7 +132,7 @@ "view.bcf": "6d1b28e3b8e3db57b828d91d9e9747a6a67f30c88ddcb38555f975854e572845", "view.bcf.csi": "589e7a71c2cb6323a99128b4818c8e6ac84d85c16181fd355e660d721d213df9" }, - "meta_sha256": "f08b4f3792119bad2c3749b44845da74bf04a52a2b9ab43470e95a9f5519b9cc", + "meta_sha256": "8d5523f90d9a76a545f8feb7f43c66f560750418338591bc64bcf69a6e1b62d8", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "5c32d955b52b50fc7727630719f634b6b50342b3abc97257fec8fae2b6327a23", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_DroMel_African3Epoch_1S16/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_DroMel_African3Epoch_1S16/r00000003/n32", "files": { "multihetsep.txt": "a09dd359a9382231f945e92290bd7010ae0155f235ab9c1a0cdb9dfa980408b8", "phlash_contig.npz": "15572956ff5fff1f69c09cb156205401755147b55a3c5f9ab4325d3b65253f4f", @@ -171,7 +171,7 @@ "view.bcf": "8a665386fe3acd67d3a7511ca0d54cb952eef69bc9e2cb608505e34a3610bf8e", "view.bcf.csi": "df89ac8ff9cd2adba0c1cfa465c90bdbbdbc6c2afe4a2330251fdb147e75b803" }, - "meta_sha256": "3e6b2bdbeca9d2881173a9383ed646bf2f6cb5ef526e212b39d4fee92948c0b3", + "meta_sha256": "b552dbf85d25ebe232d17bc5c9fd182de8479de918bcd91dc36317947ae5a490", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "5c32d955b52b50fc7727630719f634b6b50342b3abc97257fec8fae2b6327a23", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_DroMel_African3Epoch_1S16/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_DroMel_African3Epoch_1S16/r00000004/n32", "files": { "multihetsep.txt": "710a0ea21761f5409181da8b712b1fadc23809e0e31b8bae830f6f4f50ec3131", "phlash_contig.npz": "5bf7a10251c9d50c1367f8643e8cf2dc973d27ea4871837494c6e578d482b8ec", @@ -210,7 +210,7 @@ "view.bcf": "4e17fdc9addecf5230f79bb220596bc4cdd7e247af7450697f3a55874b9610ef", "view.bcf.csi": "6bdbaff3884e2efc1b78f4141ccf2039fdf170107666940c7f0ed1a13370eb09" }, - "meta_sha256": "0f660d19a9b467b9c79c233b337be0985b137583b40b0e00d221e51990a6f23e", + "meta_sha256": "31b34dd1df5a3918b8d7071d7cbe02fd77054cc505c9ba8d5d8dad300459eaff", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "5c32d955b52b50fc7727630719f634b6b50342b3abc97257fec8fae2b6327a23", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_DroMel_African3Epoch_1S16/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_DroMel_African3Epoch_1S16/r00000005/n32", "files": { "multihetsep.txt": "49f28756c372e6f2d90ca855a135cf302456daccc38a901dd11b4478535f2519", "phlash_contig.npz": "72b891075cc57704a58211bacc431280e71af5959930000355918f7119133302", @@ -249,7 +249,7 @@ "view.bcf": "88f30d7d2785d44a237d4b477e706aa438f8832d8e2afe8129a78fb235e990b8", "view.bcf.csi": "766388eaed1756bfa7321374d16ea02b1177844cc9e4ce3349ef46e2a585c1b7" }, - "meta_sha256": "2ceb6474db35d3437aa6794ae7328ad024fd112d7e5c432897f03127c2caf0d7", + "meta_sha256": "cfa8966ed40ef92259c89b654d33ddde256f13db096e5841cacd0d8fd241db17", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "5c32d955b52b50fc7727630719f634b6b50342b3abc97257fec8fae2b6327a23", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_DroMel_African3Epoch_1S16/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_DroMel_African3Epoch_1S16/r00000006/n32", "files": { "multihetsep.txt": "7318c15042c94bee630ab39abb1f60eb180cc542b835bd033cc9d478212cc505", "phlash_contig.npz": "4c64233a699e88f82246a2fcd6b498d1c26d8111a742dad31413e16de9050060", @@ -288,7 +288,7 @@ "view.bcf": "331b85c27f980944846b362d34a2249c2208473747211d170b169cb9b29d8fba", "view.bcf.csi": "689519420a62e2973f607f45f5d7f9b59f4d1d70d1a274e115e1a966e6b47dd9" }, - "meta_sha256": "aa54ca3fce5e8792281d7e02f8197113231128f3be40b78a55598f1530f8d516", + "meta_sha256": "dc46123a07be9d0e65379f2df829654eff2cf238dff92b47c1160b9a83362946", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "5c32d955b52b50fc7727630719f634b6b50342b3abc97257fec8fae2b6327a23", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_DroMel_African3Epoch_1S16/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_DroMel_African3Epoch_1S16/r00000007/n32", "files": { "multihetsep.txt": "49e147bbe082e4d8de54b82030fa526fc16de00f7d0d56181e36adf59d424422", "phlash_contig.npz": "7efc68e55187dab38349b66c459f5781a1e8a1afc20b4f4f9530a26684e0b195", @@ -327,7 +327,7 @@ "view.bcf": "75498fa1aa76beb8bbf3b2aa6753b3ce67586c0e70925b5df7e66db82b033a8d", "view.bcf.csi": "45245971851e8670a0c3273c9fb0f93e4dbe6b97bd091365bd8434d2c2353ced" }, - "meta_sha256": "275ca06d9616aded37377291a7a7640d69a6f30f46a92162b2a7d26b0dfb5390", + "meta_sha256": "3917979a28fdded8c620eee0090d2408ce2d5361fd8f5c00f1c7a60c9c42ef23", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/S1_DroMel_African3Epoch_1S16/receipts/identity_scan_51959168.json b/method_inputs/a1/S1_DroMel_African3Epoch_1S16/receipts/identity_scan_51959168.json index 57e5669fcd2eb280b00a4183dc5429882347acf1..f316df7a13b4972e99fcc597cf39955568ecaa65 100644 --- a/method_inputs/a1/S1_DroMel_African3Epoch_1S16/receipts/identity_scan_51959168.json +++ b/method_inputs/a1/S1_DroMel_African3Epoch_1S16/receipts/identity_scan_51959168.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "c652534d8453c5bb8c4236a2427fe5c343f082d01e8e57c7156468c949eb1d0f" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T14:33:19Z" diff --git a/method_inputs/a1/S1_DroMel_African3Epoch_1S16/receipts/open_audit_51959168.json b/method_inputs/a1/S1_DroMel_African3Epoch_1S16/receipts/open_audit_51959168.json index a1058675ccf0b21c38d05f6f2bc81e78f29ab916..ecc45d30bc8d608c7a7ef5d812281dcbee2bfb7a 100644 --- a/method_inputs/a1/S1_DroMel_African3Epoch_1S16/receipts/open_audit_51959168.json +++ b/method_inputs/a1/S1_DroMel_African3Epoch_1S16/receipts/open_audit_51959168.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_DroMel_African3Epoch_1S16/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_DroMel_African3Epoch_1S16/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - 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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/events.log" + "path": "$WORK/bench_h2h_20260915/events.log" } ], "purposes": [ diff --git a/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000000/n32/meta.json b/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000000/n32/meta.json index 97ca007fda745a71dacf96ba3e6ecfc9bc3a3618..a68399006e3bbbbb35c5356f609ff81768e1894f 100644 --- a/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000000/n32/meta.json +++ b/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000000/n32/meta.json @@ -2,7 +2,7 @@ "S": 368467, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "6f3ea4ca4624d0db77eb0288d298ea67e67fe9376611e470de3770e879cfe834", "canonical_id": "57e297d21e18f0c47186c0431251e05ba796b37a23d74383a8b760ecf58f6e99:00000000", @@ -50,7 +50,7 @@ "view.bcf": "0e1cff1f6f9c36c3d5b0ab4abfab5eae510057f88a6719ce656f533b58270eea", "view.bcf.csi": "c77a05070e39b22ca6e0135e4a98a176707f75e1df0901615280a195894b4d43" }, - 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"fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "bfdead04dd0aea662c5527c1cfdc923179b248744268291262826ff6765c590f", "ladder_columns": [ 23, diff --git a/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000003/n32/meta.json b/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000003/n32/meta.json index c328f48969b895b22143cbdb8a886688c16e16fc..4030d0c2d5ec13014ac489c5508428c77ccd22a7 100644 --- a/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000003/n32/meta.json +++ b/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 369338, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "6f3ea4ca4624d0db77eb0288d298ea67e67fe9376611e470de3770e879cfe834", "canonical_id": "57e297d21e18f0c47186c0431251e05ba796b37a23d74383a8b760ecf58f6e99:00000003", @@ -50,7 +50,7 @@ "view.bcf": "e4edeead348e2646067df0661819809024497394dd7ad87d643a35b75ce237b8", "view.bcf.csi": "5b3cce66418adad4be04e47ddeb076f9db2bd2726e19fc2295e33cf75f199871" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "bfdead04dd0aea662c5527c1cfdc923179b248744268291262826ff6765c590f", "ladder_columns": [ 35, diff --git a/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000004/n32/meta.json b/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000004/n32/meta.json index 3af9daab41f54449c653617738f770de3618cc4a..fadf0dc11aed6a5957bb861a076bac2531b8261d 100644 --- a/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000004/n32/meta.json +++ b/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 371844, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "6f3ea4ca4624d0db77eb0288d298ea67e67fe9376611e470de3770e879cfe834", "canonical_id": "57e297d21e18f0c47186c0431251e05ba796b37a23d74383a8b760ecf58f6e99:00000004", @@ -50,7 +50,7 @@ "view.bcf": "b386d96e47de1fc675ec3b6e80992bb5025cd204bf78509f26c8c8bcc1212aba", "view.bcf.csi": "4a3be19fe5598125eb1e310fc6cdfab3237ff0a409af3462b60deeeb6a890fa3" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "a40ec5cdaabdc4608d0063fae16d64e5c8202616cc7868b0757af3b19ffb509f", "ladder_columns": [ 22, diff --git a/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000005/n32/meta.json b/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000005/n32/meta.json index 5134c86de0955bf6b8e1a19e0f16420c0bab76b8..b9dc50a54837e71b4cf1408b62063cd3aaecd834 100644 --- a/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000005/n32/meta.json +++ b/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 368141, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "6f3ea4ca4624d0db77eb0288d298ea67e67fe9376611e470de3770e879cfe834", "canonical_id": "57e297d21e18f0c47186c0431251e05ba796b37a23d74383a8b760ecf58f6e99:00000005", @@ -50,7 +50,7 @@ "view.bcf": "d2d81db070c5d9f407344fb10a5640e3bc79acde40a75f7d2f5c5bdea76e195b", "view.bcf.csi": "c880b0091c128a45df1fdfb6ab7d70bc9c232141eb23f71a423061bf8bf7028e" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "a40ec5cdaabdc4608d0063fae16d64e5c8202616cc7868b0757af3b19ffb509f", "ladder_columns": [ 8, diff --git a/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000006/n32/meta.json b/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000006/n32/meta.json index b6d598f1f8407934ae02badbbf6ed78b7a802bff..737060f75cda51f4c1beae66c5fc78ebfd459e1b 100644 --- a/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000006/n32/meta.json +++ b/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 369430, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "6f3ea4ca4624d0db77eb0288d298ea67e67fe9376611e470de3770e879cfe834", "canonical_id": "57e297d21e18f0c47186c0431251e05ba796b37a23d74383a8b760ecf58f6e99:00000006", @@ -50,7 +50,7 @@ "view.bcf": "5e510c0e6a027cb68029b10ae8bcee953e3f872773164727cf38dc6d49c4f5fa", "view.bcf.csi": "1ec444880dc28ab516a17f0af4b9729da009f696fd0fc5a6dd694623d3f16fb0" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "a40ec5cdaabdc4608d0063fae16d64e5c8202616cc7868b0757af3b19ffb509f", "ladder_columns": [ 60, diff --git a/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000007/n32/meta.json b/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000007/n32/meta.json index bb32e51b91f4bbdc517a9846bbb70da56f8b40f4..b134537580b4150d00effc02944963772db014e5 100644 --- a/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000007/n32/meta.json +++ b/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 369500, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "6f3ea4ca4624d0db77eb0288d298ea67e67fe9376611e470de3770e879cfe834", "canonical_id": "57e297d21e18f0c47186c0431251e05ba796b37a23d74383a8b760ecf58f6e99:00000007", @@ -50,7 +50,7 @@ "view.bcf": "bbcd2eb0f0bc45f441bbea89178263c8db2ed885f99e115452231293ff210f8d", "view.bcf.csi": "eba82f094efe4e9ae1f802a61d91312fa696f79a834dee4660e20c3408f20ebd" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "a40ec5cdaabdc4608d0063fae16d64e5c8202616cc7868b0757af3b19ffb509f", "ladder_columns": [ 31, diff --git a/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/receipts/export_51933430.json b/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/receipts/export_51933430.json index 61e0fd67a28062064020ec0d7810c5342e18d702..675b286bfd1c76ad7007dc35ebeb5e5bb0258322 100644 --- a/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/receipts/export_51933430.json +++ b/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/receipts/export_51933430.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_S1_PapAnu_SinglePopSMCpp_1W22", "host": "cn604-15", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/receipts/identity_scan_51933430.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/receipts/identity_scan_51933430.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "9814abc699323dff9d054d01609c6cbaa299e98def9ce5f3c24ad53d2f2657ba" + "sha256": "983d460e8928e33423e97d2c92fd28947aaa6a9d0e91ed09215f184b711478b1" }, "job": "51933430", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/receipts/open_audit_51933430.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/receipts/open_audit_51933430.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6f3ea4ca4624d0db77eb0288d298ea67e67fe9376611e470de3770e879cfe834", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/r00000000/n32", "files": { "multihetsep.txt": "5e1f5278d2e2b58f138a9bd7ad1b000c4c9f7b8675f1f804917b53ad23d1e36a", "phlash_contig.npz": "9222c0f802d3f0af193854d682d12c3e8535dd95acfe0ece63131572e4cf6178", @@ -54,7 +54,7 @@ "view.bcf": "0e1cff1f6f9c36c3d5b0ab4abfab5eae510057f88a6719ce656f533b58270eea", "view.bcf.csi": "c77a05070e39b22ca6e0135e4a98a176707f75e1df0901615280a195894b4d43" }, - "meta_sha256": "8b5d53909d7960fc54effd01ad490aabec47396c197b1082fa58de8325f71107", + "meta_sha256": "41939deceff26a765e52b9c3483966ff05b60390934ac2112b2f5c54491d87b3", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6f3ea4ca4624d0db77eb0288d298ea67e67fe9376611e470de3770e879cfe834", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/r00000001/n32", "files": { "multihetsep.txt": "c455ccde575ca34da784afc86b239877d1503db4f8cbef48f531db261a6f811d", "phlash_contig.npz": "fe7039d7e08b1eba1a3b01c4256e8d71062efe400e23c5acaf7d4879b2ad99be", @@ -93,7 +93,7 @@ "view.bcf": "69874bc0301088713c3fc098ddf0843b6830d7f7322f9442c8647092399443a6", "view.bcf.csi": "884aa56bb39f07fe1fb8fadf5cc7df51aeae227c2e019005b916f1eae1b72d31" }, - "meta_sha256": "ad7473ae3521661926230a8f2823495f2d8a78c5e4c62e8c85ceb61752177d9e", + "meta_sha256": "51eeaea5985be23321aa94592692125a71f9d5f3a8191f97d80be14110f3d56d", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6f3ea4ca4624d0db77eb0288d298ea67e67fe9376611e470de3770e879cfe834", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/r00000002/n32", "files": { "multihetsep.txt": "7279f868a3adbb58e6df1e055a2a3380095177c6bd7f4922db9764828c830131", "phlash_contig.npz": "d619aa55f9492e62395f706e267f13ea131cb0375e4f002cc1fc27a10240910e", @@ -132,7 +132,7 @@ "view.bcf": "66c6ff6bb7f9885fe672475b54f4246dd712209dd4fedf3f353f754a2a005d39", "view.bcf.csi": "213e6d0df45059e767e0257710a26a9c72b922315f820d855ca117604f004096" }, - "meta_sha256": "2ea67de6c3728d484ba93526b878ba51b1bc20a9432460d3b453399fe6ee5caf", + "meta_sha256": "464886dfd062b2e1654f8d976f3c0f3d01acf0c06662a2931ffe8daf923da728", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6f3ea4ca4624d0db77eb0288d298ea67e67fe9376611e470de3770e879cfe834", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/r00000003/n32", "files": { "multihetsep.txt": "204a6da5e39a148de81b7fe83e9ccc42df82a586c841c4148c0ebde14504910e", "phlash_contig.npz": "0dcb897890cfcf90feb8695e3fc781bf2e75be182ad826bc9e43b59195827b8b", @@ -171,7 +171,7 @@ "view.bcf": "e4edeead348e2646067df0661819809024497394dd7ad87d643a35b75ce237b8", "view.bcf.csi": "5b3cce66418adad4be04e47ddeb076f9db2bd2726e19fc2295e33cf75f199871" }, - "meta_sha256": "fba1d252e841bd563faba62b3af158f50fae5f4737295f7f7daef5094fd50eb6", + "meta_sha256": "2173d57973ea7166a4e309e09427f5bebd634c15b0c8a2f69ea3aa9b426dad27", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6f3ea4ca4624d0db77eb0288d298ea67e67fe9376611e470de3770e879cfe834", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/r00000004/n32", "files": { "multihetsep.txt": "b9c35ddb88974471f39d58b72d75c2e068bc3a884e3288675b360198dc9ed321", "phlash_contig.npz": "15833a5247b2457980aaa71ac98b3c4c8dde289aaed09803fdab893b9b4c2448", @@ -210,7 +210,7 @@ "view.bcf": "b386d96e47de1fc675ec3b6e80992bb5025cd204bf78509f26c8c8bcc1212aba", "view.bcf.csi": "4a3be19fe5598125eb1e310fc6cdfab3237ff0a409af3462b60deeeb6a890fa3" }, - "meta_sha256": "2ebdf9f83010a233ccb80ba0e31c96a65a4d21ad19ed77df33b76d940e1cb314", + "meta_sha256": "bc4d4cf113a863db305d63d34477f2fcc784882e139b12a098fe746586c5cae2", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6f3ea4ca4624d0db77eb0288d298ea67e67fe9376611e470de3770e879cfe834", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/r00000005/n32", "files": { "multihetsep.txt": "cf8e50e53587edfb9862bec2635c09b8e13477a1b57f4959b9a70a641ad475b7", "phlash_contig.npz": "ceff7b0577b0f2eaa33a12156399d3baaab6f9903f3bbb08d46880a6b0ab61a1", @@ -249,7 +249,7 @@ "view.bcf": "d2d81db070c5d9f407344fb10a5640e3bc79acde40a75f7d2f5c5bdea76e195b", "view.bcf.csi": "c880b0091c128a45df1fdfb6ab7d70bc9c232141eb23f71a423061bf8bf7028e" }, - "meta_sha256": "19b2c42191b97e58461ba6dfc9a642784a17f456da8881dd03662521e8e18ebd", + "meta_sha256": "b3732d195ace82641df7e7aba1b477aae2e3bed56a6addb32c229440d6208ea2", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6f3ea4ca4624d0db77eb0288d298ea67e67fe9376611e470de3770e879cfe834", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/r00000006/n32", "files": { "multihetsep.txt": "9b04b37e1a4a3cf2f1a93cc50a67bbc06103f9e5ccb1e14d68e994d98cdbaea5", "phlash_contig.npz": "a4e648548ff828104325607e7825a4c792cb759145a895fa236922176388b279", @@ -288,7 +288,7 @@ "view.bcf": "5e510c0e6a027cb68029b10ae8bcee953e3f872773164727cf38dc6d49c4f5fa", "view.bcf.csi": "1ec444880dc28ab516a17f0af4b9729da009f696fd0fc5a6dd694623d3f16fb0" }, - "meta_sha256": "896ed775bd26c7a34b8c93c1496eb6c49d59224919880842ca8dc63a5b2fbb87", + "meta_sha256": "f229eff6580772e9223c4578ec780db9119a4591803fc7442b1bbaf0ccfe96cf", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "6f3ea4ca4624d0db77eb0288d298ea67e67fe9376611e470de3770e879cfe834", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/r00000007/n32", "files": { "multihetsep.txt": "d11992dcc7f0cc369093694a558e8a3824b97903e08d869fc15a45b3c0076e62", "phlash_contig.npz": "5cb9c389631ecf3caaf7a1f5f10a700032e15449a3298f72f52ff91d448fce81", @@ -327,7 +327,7 @@ "view.bcf": "bbcd2eb0f0bc45f441bbea89178263c8db2ed885f99e115452231293ff210f8d", "view.bcf.csi": "eba82f094efe4e9ae1f802a61d91312fa696f79a834dee4660e20c3408f20ebd" }, - "meta_sha256": "3d4e059b5e67141ca384fe852537229f540902a15bb6ef08efddae85c5a3a854", + "meta_sha256": "4e1ae4cf55bca3fa9b6d6aeb16af3111b504e27b7b689aa587f5e472139dbe0e", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/receipts/identity_scan_51933430.json b/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/receipts/identity_scan_51933430.json index f1d5c30cae3cad7418668bc3be2003ae830a7df6..80bf4dbaf6b6810c30b1fc4a1d9e790d6bf07c05 100644 --- a/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/receipts/identity_scan_51933430.json +++ b/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/receipts/identity_scan_51933430.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "57e297d21e18f0c47186c0431251e05ba796b37a23d74383a8b760ecf58f6e99" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T11:03:44Z" diff --git a/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/receipts/open_audit_51933430.json b/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/receipts/open_audit_51933430.json index ce69385675ed10cf8069527292b2d8b2746b0e72..38964fc50559641154145722c71863ee16b087a7 100644 --- a/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/receipts/open_audit_51933430.json +++ b/method_inputs/a1/S1_PapAnu_SinglePopSMCpp_1W22/receipts/open_audit_51933430.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/receipts/identity_scan_51933430.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/receipts/identity_scan_51933430.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_S1_PapAnu_SinglePopSMCpp_1W22/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - 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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/events.log" + "path": "$WORK/bench_h2h_20260915/events.log" } ], "purposes": [ diff --git a/method_inputs/a1/SLOW_DECLINE_X10/r00000000/n32/meta.json b/method_inputs/a1/SLOW_DECLINE_X10/r00000000/n32/meta.json index e99c07839efa57af581c6858ea6e5e669e988c0a..1a2be0c7cd9e7070e36e57c28aa70e00ad546115 100644 --- a/method_inputs/a1/SLOW_DECLINE_X10/r00000000/n32/meta.json +++ b/method_inputs/a1/SLOW_DECLINE_X10/r00000000/n32/meta.json @@ -2,7 +2,7 @@ "S": 120743, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_SLOW_DECLINE_X10/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_SLOW_DECLINE_X10/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "01c68aca399f4d68bf7dcc694f6bb92cca564962af68426ecf3f663825b23d17", "canonical_id": "71c1060f64f391568b6185f282b4a986b8c00044680b74f4d8f8713c5a736fb7:00000000", @@ -50,7 +50,7 @@ "view.bcf": "4b38cdb5047d2c3ece1ab1b976a5b270b1e4238836cf3366466d86c77893c4ba", "view.bcf.csi": "7cd442ae3915d77a88179cb332eb987264f16fcc689f5c9ff6bcc3c2d2ceeb14" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "5250acd00b82aac0492b0c5530e0bbeddfcde829290a1d2aae9f3a26f53f69f6", "ladder_columns": [ 39, diff --git a/method_inputs/a1/SLOW_DECLINE_X10/r00000001/n32/meta.json b/method_inputs/a1/SLOW_DECLINE_X10/r00000001/n32/meta.json index defef6cb9216148a3aa9208771680e2c83ba9011..0b6ff72b9facf1d0f9631156be6429cbe5cf559a 100644 --- a/method_inputs/a1/SLOW_DECLINE_X10/r00000001/n32/meta.json +++ b/method_inputs/a1/SLOW_DECLINE_X10/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 121261, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_SLOW_DECLINE_X10/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_SLOW_DECLINE_X10/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "01c68aca399f4d68bf7dcc694f6bb92cca564962af68426ecf3f663825b23d17", "canonical_id": "71c1060f64f391568b6185f282b4a986b8c00044680b74f4d8f8713c5a736fb7:00000001", @@ -50,7 +50,7 @@ "view.bcf": "583ae7a75a042e6fd5316e6e64f029962bf207fa257140cd04bf640add3ccf9f", "view.bcf.csi": "89ea1c3c3bbbc8d3dde8e83cd6688d8d9ce554be999a2eb255ed7d5fb34c5fe1" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "5250acd00b82aac0492b0c5530e0bbeddfcde829290a1d2aae9f3a26f53f69f6", "ladder_columns": [ 16, diff --git a/method_inputs/a1/SLOW_DECLINE_X10/r00000002/n32/meta.json b/method_inputs/a1/SLOW_DECLINE_X10/r00000002/n32/meta.json index 4633742b5294a045d8268c7cae9bab868e890412..c100e21c497546b1862a271ba3c29cf8b0a56db4 100644 --- a/method_inputs/a1/SLOW_DECLINE_X10/r00000002/n32/meta.json +++ b/method_inputs/a1/SLOW_DECLINE_X10/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 118654, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_SLOW_DECLINE_X10/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_SLOW_DECLINE_X10/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "01c68aca399f4d68bf7dcc694f6bb92cca564962af68426ecf3f663825b23d17", "canonical_id": "71c1060f64f391568b6185f282b4a986b8c00044680b74f4d8f8713c5a736fb7:00000002", @@ -50,7 +50,7 @@ "view.bcf": "770ac01851c5353db41756ce7beddf8d5c235451317892eca695c187f57e3f1c", "view.bcf.csi": "b104ee4779c41c64582ff3cbd9e37c225f93dcf891b4a559046cab0c928fc7df" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "5250acd00b82aac0492b0c5530e0bbeddfcde829290a1d2aae9f3a26f53f69f6", "ladder_columns": [ 23, diff --git a/method_inputs/a1/SLOW_DECLINE_X10/r00000003/n32/meta.json b/method_inputs/a1/SLOW_DECLINE_X10/r00000003/n32/meta.json index 5c3b001c20c0dd77669db6fe745f2f27fc21015f..4d213c7b616e2acd2c40506f8c8fe770e62e88f0 100644 --- a/method_inputs/a1/SLOW_DECLINE_X10/r00000003/n32/meta.json +++ b/method_inputs/a1/SLOW_DECLINE_X10/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 117294, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_SLOW_DECLINE_X10/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_SLOW_DECLINE_X10/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "01c68aca399f4d68bf7dcc694f6bb92cca564962af68426ecf3f663825b23d17", "canonical_id": "71c1060f64f391568b6185f282b4a986b8c00044680b74f4d8f8713c5a736fb7:00000003", @@ -50,7 +50,7 @@ "view.bcf": "f06f80c9ce591987258b385192c306b3220baebe6596c8475be734cd1c749a01", "view.bcf.csi": "59db372f5b7d72e3a9d68da6e50b881b444a4ed86d99f177526dcc5d06615806" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "5250acd00b82aac0492b0c5530e0bbeddfcde829290a1d2aae9f3a26f53f69f6", "ladder_columns": [ 35, diff --git a/method_inputs/a1/SLOW_DECLINE_X10/r00000004/n32/meta.json b/method_inputs/a1/SLOW_DECLINE_X10/r00000004/n32/meta.json index bb134e8562f5f08261e567f09e627e917175a23c..c37420fa87e015da69e3249fa24c2007977cd56b 100644 --- a/method_inputs/a1/SLOW_DECLINE_X10/r00000004/n32/meta.json +++ b/method_inputs/a1/SLOW_DECLINE_X10/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 119598, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_SLOW_DECLINE_X10/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_SLOW_DECLINE_X10/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "01c68aca399f4d68bf7dcc694f6bb92cca564962af68426ecf3f663825b23d17", "canonical_id": "71c1060f64f391568b6185f282b4a986b8c00044680b74f4d8f8713c5a736fb7:00000004", @@ -50,7 +50,7 @@ "view.bcf": "0d96edd09f13aeee0220d95dab8b889c7c308817230eb2306e382a65e3ccc94e", "view.bcf.csi": "2bcb338f1b1b65b051aa740a74da5c4db68bb526b96751f6be3159c762eff89b" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "9955f729e51c3f7b28733c89ad942ee890e1937bc5bfda36c298506cfa70dd3e", "ladder_columns": [ 22, diff --git a/method_inputs/a1/SLOW_DECLINE_X10/r00000005/n32/meta.json b/method_inputs/a1/SLOW_DECLINE_X10/r00000005/n32/meta.json index 0046e67600515e536089b226d6b2e26727f95f0e..e245ef8f3c363c49bd2d0a6e8bf8078768490577 100644 --- a/method_inputs/a1/SLOW_DECLINE_X10/r00000005/n32/meta.json +++ b/method_inputs/a1/SLOW_DECLINE_X10/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 120576, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_SLOW_DECLINE_X10/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_SLOW_DECLINE_X10/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "01c68aca399f4d68bf7dcc694f6bb92cca564962af68426ecf3f663825b23d17", "canonical_id": "71c1060f64f391568b6185f282b4a986b8c00044680b74f4d8f8713c5a736fb7:00000005", @@ -50,7 +50,7 @@ "view.bcf": "5163ac73db9c0483baf7a502e66dc0b6b6d893d9c41f31eed386f7d2d0e3b738", "view.bcf.csi": "ec1bae695e57ae892efd2dd8b25c54b62afb3f73a30922ed58e41f435314e1fe" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "9955f729e51c3f7b28733c89ad942ee890e1937bc5bfda36c298506cfa70dd3e", "ladder_columns": [ 8, diff --git a/method_inputs/a1/SLOW_DECLINE_X10/r00000006/n32/meta.json b/method_inputs/a1/SLOW_DECLINE_X10/r00000006/n32/meta.json index 8728f2e18b09f8f706e413b361237249fd94ebae..2f52a8c10f743fd18d0e938cf8de7c51349635fb 100644 --- a/method_inputs/a1/SLOW_DECLINE_X10/r00000006/n32/meta.json +++ b/method_inputs/a1/SLOW_DECLINE_X10/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 120342, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_SLOW_DECLINE_X10/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_SLOW_DECLINE_X10/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "01c68aca399f4d68bf7dcc694f6bb92cca564962af68426ecf3f663825b23d17", "canonical_id": "71c1060f64f391568b6185f282b4a986b8c00044680b74f4d8f8713c5a736fb7:00000006", @@ -50,7 +50,7 @@ "view.bcf": "00b901bff470244ba5da4e18133b0fa0a5961371e68ae5eaf6d140b177194a75", "view.bcf.csi": "92e3233cd8ed946334a43dea108d764728ed1a88d4ef87d5860f8452e80097c0" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "9955f729e51c3f7b28733c89ad942ee890e1937bc5bfda36c298506cfa70dd3e", "ladder_columns": [ 60, diff --git a/method_inputs/a1/SLOW_DECLINE_X10/r00000007/n32/meta.json b/method_inputs/a1/SLOW_DECLINE_X10/r00000007/n32/meta.json index f962cd082a828fdf3292bf158be0da50a7c2b109..5e479b3d412508887ea2b76a504c433182676b99 100644 --- a/method_inputs/a1/SLOW_DECLINE_X10/r00000007/n32/meta.json +++ b/method_inputs/a1/SLOW_DECLINE_X10/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 119684, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_SLOW_DECLINE_X10/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_SLOW_DECLINE_X10/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "01c68aca399f4d68bf7dcc694f6bb92cca564962af68426ecf3f663825b23d17", "canonical_id": "71c1060f64f391568b6185f282b4a986b8c00044680b74f4d8f8713c5a736fb7:00000007", @@ -50,7 +50,7 @@ "view.bcf": "8e21ac24dee9b9a1ffa4d92857daf2e07810afd29abba7c4dd390258fb6dc254", "view.bcf.csi": "38be1df017f849044c869216266b6d6c2f1daf5ee0e93ddd8fb5ebc3b27782b3" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "9955f729e51c3f7b28733c89ad942ee890e1937bc5bfda36c298506cfa70dd3e", "ladder_columns": [ 31, diff --git a/method_inputs/a1/SLOW_DECLINE_X10/receipts/export_51933474.json b/method_inputs/a1/SLOW_DECLINE_X10/receipts/export_51933474.json index 445197a300e81c0a15090a10030e9394d15b76c3..3db6a15652776be439247677a394bff268e8b05a 100644 --- a/method_inputs/a1/SLOW_DECLINE_X10/receipts/export_51933474.json +++ b/method_inputs/a1/SLOW_DECLINE_X10/receipts/export_51933474.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_SLOW_DECLINE_X10", "host": "cn604-18", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/receipts/identity_scan_51933474.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/receipts/identity_scan_51933474.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "b41afb29fc3411136013139732505cbbea5134b286abdc3a28e95867146246ba" + "sha256": "8d3036206810c200cb3f263047dd14b26d6d7375891d0e5a88367bf2e9c44d85" }, "job": "51933474", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/receipts/open_audit_51933474.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/receipts/open_audit_51933474.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "01c68aca399f4d68bf7dcc694f6bb92cca564962af68426ecf3f663825b23d17", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000000/n32", "files": { "multihetsep.txt": "343b6e19c692106ed8f7334d4e9a8c3efb529bbfefa9247f913c239b222c57bf", "phlash_contig.npz": "84bf48c14cb8ee30ce7d047d500c7dc0026b2a7fa4a10058ca11c3445dc8761a", @@ -54,7 +54,7 @@ "view.bcf": "4b38cdb5047d2c3ece1ab1b976a5b270b1e4238836cf3366466d86c77893c4ba", "view.bcf.csi": "7cd442ae3915d77a88179cb332eb987264f16fcc689f5c9ff6bcc3c2d2ceeb14" }, - "meta_sha256": "b7d970d851e3601b2d52a5f0433a0ba3f6fb3a012cbce4f3112be7bb68bfa2e3", + "meta_sha256": "64169d6de42000744f7633fce888d6275c4773eb4cafcf9a8cb64f4637d63426", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "01c68aca399f4d68bf7dcc694f6bb92cca564962af68426ecf3f663825b23d17", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000001/n32", "files": { "multihetsep.txt": "190f7cefe217da5965ec4051c26fb3af69c73f4bb55429193e424d9de6aa287f", "phlash_contig.npz": "86c70a67c777dd8061dafbf0cc1d7ce63c2e85916b436a032a869b323b80d113", @@ -93,7 +93,7 @@ "view.bcf": "583ae7a75a042e6fd5316e6e64f029962bf207fa257140cd04bf640add3ccf9f", "view.bcf.csi": "89ea1c3c3bbbc8d3dde8e83cd6688d8d9ce554be999a2eb255ed7d5fb34c5fe1" }, - "meta_sha256": "753366ff74c251c7fead454eda0e15209cfc5f0243db3ba5d0157e2cddb95923", + "meta_sha256": "e54189cd1c0bd264ec4aacaacdaff53f85e2e85d32cfaf13eaa42a4679393784", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "01c68aca399f4d68bf7dcc694f6bb92cca564962af68426ecf3f663825b23d17", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000002/n32", "files": { "multihetsep.txt": "953724342ee98815eabd6ecbe0c27cee2ce72468ee841752d9fb858dc9505ed8", "phlash_contig.npz": "ef44f0ce1d22b7e976c9ab6bd99feb3221c21bbd77b38783a339941443fe1eab", @@ -132,7 +132,7 @@ "view.bcf": "770ac01851c5353db41756ce7beddf8d5c235451317892eca695c187f57e3f1c", "view.bcf.csi": "b104ee4779c41c64582ff3cbd9e37c225f93dcf891b4a559046cab0c928fc7df" }, - "meta_sha256": "6e00b60053587616d18f96c1ffc8328965f540659ee685bf9b530af9ddb62bec", + "meta_sha256": "017ab5755c165ab029ae47c40fde67dd51feaaa77a4d8c725173ac98f7f095b5", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "01c68aca399f4d68bf7dcc694f6bb92cca564962af68426ecf3f663825b23d17", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000003/n32", "files": { "multihetsep.txt": "73d1d63f256af84ad20886dd2057fcc35942f701c37c3da0d883c2c6c46035d6", "phlash_contig.npz": "228fde16bd2aa5a3e46d80abed92bd97dbfabec357dc1ef7cbaef829db0fe48d", @@ -171,7 +171,7 @@ "view.bcf": "f06f80c9ce591987258b385192c306b3220baebe6596c8475be734cd1c749a01", "view.bcf.csi": "59db372f5b7d72e3a9d68da6e50b881b444a4ed86d99f177526dcc5d06615806" }, - "meta_sha256": "ba740918b908751650047c4c7b41bebb699119d6e9dc5ca5f51c73ce1ba47ec4", + "meta_sha256": "b601b75cd71273720b393f9a0e15c9e5dcd99d64ae5fe6b4dd5e7444910de833", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "01c68aca399f4d68bf7dcc694f6bb92cca564962af68426ecf3f663825b23d17", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000004/n32", "files": { "multihetsep.txt": "673696f9283b8f89a014a37aabe6f7f9739db773368544b61a03a5889d9b67ef", "phlash_contig.npz": "a86ccea2d0dc55ec74b47bb6e6514bf5ceeddab8b0a45c51fda3e5f3a272d067", @@ -210,7 +210,7 @@ "view.bcf": "0d96edd09f13aeee0220d95dab8b889c7c308817230eb2306e382a65e3ccc94e", "view.bcf.csi": "2bcb338f1b1b65b051aa740a74da5c4db68bb526b96751f6be3159c762eff89b" }, - "meta_sha256": "6b16ae20ec599ddb1d5baf7e5eda710716534d0a042e76ae81baa75a290bdb65", + "meta_sha256": "1b34d2fff09f2a2e3512d3221f3dfd9140526fe94a6e2ceedcb8bb071598dfcf", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "01c68aca399f4d68bf7dcc694f6bb92cca564962af68426ecf3f663825b23d17", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000005/n32", "files": { "multihetsep.txt": "28e7d1ec6f0a273a5e65e3a82b4cf511df9940c336f95c05c53e1404350c9424", "phlash_contig.npz": "f0c47bca16369ee556922256e1a9acafe87ce08486542e97da23218eaf687e84", @@ -249,7 +249,7 @@ "view.bcf": "5163ac73db9c0483baf7a502e66dc0b6b6d893d9c41f31eed386f7d2d0e3b738", "view.bcf.csi": "ec1bae695e57ae892efd2dd8b25c54b62afb3f73a30922ed58e41f435314e1fe" }, - "meta_sha256": "fbc0d1c73b48d1e49eff960c9e33e8bc255ca3147011c74f657711ea496facb6", + "meta_sha256": "44e0fce6eef650ddf73e0955eedf89ab6964a0391e3f779adea8efff9df056ad", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "01c68aca399f4d68bf7dcc694f6bb92cca564962af68426ecf3f663825b23d17", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000006/n32", "files": { "multihetsep.txt": "1ba8f04b2d1be6d0393c3382890b696bff81c434a3e0ca6262790b06a28b1284", "phlash_contig.npz": "a67afeab75702c8ed30b20090f3d3bdf698e350953c364c17de1041a8c7435d3", @@ -288,7 +288,7 @@ "view.bcf": "00b901bff470244ba5da4e18133b0fa0a5961371e68ae5eaf6d140b177194a75", "view.bcf.csi": "92e3233cd8ed946334a43dea108d764728ed1a88d4ef87d5860f8452e80097c0" }, - "meta_sha256": "585d149eaf0f3ab70e9d8b5f37ff50e8b6cb22a29a941e08e08e90db778e9258", + "meta_sha256": "34dd0ed55bd8038bef47c2208b18254876e5a17dae952f850d930bcfd77f32be", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "01c68aca399f4d68bf7dcc694f6bb92cca564962af68426ecf3f663825b23d17", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000007/n32", "files": { "multihetsep.txt": "051a259ae797d0c4d6026a61339b68b662cb951a9f6f8a8915c3e4e0bf7fcf16", "phlash_contig.npz": "6b05d2690db6906a2ab741d602b5a06abf33492ff7968a805227a7e82122c9bc", @@ -327,7 +327,7 @@ "view.bcf": "8e21ac24dee9b9a1ffa4d92857daf2e07810afd29abba7c4dd390258fb6dc254", "view.bcf.csi": "38be1df017f849044c869216266b6d6c2f1daf5ee0e93ddd8fb5ebc3b27782b3" }, - "meta_sha256": "1ad747954508775c0c48c3b05ab4fa83547eb50e7627d484e260e0fad05895a2", + "meta_sha256": "06976affa3907d760192a1a5609fe935577d02e90d799bcdeff6db44d2989f9b", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/SLOW_DECLINE_X10/receipts/identity_scan_51933474.json b/method_inputs/a1/SLOW_DECLINE_X10/receipts/identity_scan_51933474.json index ab808c6ebfd055e21137c57bfb46fe414640d787..4679248ebe7fdf8feced0b22d11f403ccf458f32 100644 --- a/method_inputs/a1/SLOW_DECLINE_X10/receipts/identity_scan_51933474.json +++ b/method_inputs/a1/SLOW_DECLINE_X10/receipts/identity_scan_51933474.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "71c1060f64f391568b6185f282b4a986b8c00044680b74f4d8f8713c5a736fb7" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T11:04:49Z" diff --git a/method_inputs/a1/SLOW_DECLINE_X10/receipts/open_audit_51933474.json b/method_inputs/a1/SLOW_DECLINE_X10/receipts/open_audit_51933474.json index e6f405006c9b595deda85898bd1389509d7fcac4..fe3dcd5c503af52651f73805303c690c2896b08d 100644 --- a/method_inputs/a1/SLOW_DECLINE_X10/receipts/open_audit_51933474.json +++ b/method_inputs/a1/SLOW_DECLINE_X10/receipts/open_audit_51933474.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/receipts/identity_scan_51933474.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/receipts/identity_scan_51933474.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_SLOW_DECLINE_X10/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_SLOW_DECLINE_X10/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_SLOW_DECLINE_X10/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_SLOW_DECLINE_X10/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_SLOW_DECLINE_X10/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_SLOW_DECLINE_X10/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_SLOW_DECLINE_X10/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000000/.n32.tmp-c71vzqxh/view.vcf" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000000/.n32.tmp-c71vzqxh/view.vcf" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000000/.n32.tmp-c71vzqxh/phlash_contig.npz" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000000/.n32.tmp-c71vzqxh/phlash_contig.npz" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000000/.n32.tmp-c71vzqxh/sfs_unfolded.npy" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000000/.n32.tmp-c71vzqxh/sfs_unfolded.npy" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000000/.n32.tmp-c71vzqxh/multihetsep.txt" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_SLOW_DECLINE_X10/r00000000/.n32.tmp-c71vzqxh/multihetsep.txt" }, { "mode": "r", - 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"cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "c1a06f2c98b08bd4194ba82d02ee3e1ed67ca97b53d1fd1ba25f7a5b9156c13d", "canonical_id": "4c202f587f87d99fa63fd54d7bdf60279b79941669cc3ec1dca3d7c11b5dd0cb:00000000", @@ -50,7 +50,7 @@ "view.bcf": "4e57eaaa1754dfd0bb04be5d42b25435d14592c6075636191a350cebd5a3a0da", "view.bcf.csi": "a5e266768ae63e9ed1a8730e25db04ee2ddf26f86ede3efc4de7c6f895673b04" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "3b94cf3e0d0ffa8071715e49d0b2ede3c103f7f259dc90ca221ffa4bba22ce88", "ladder_columns": [ 39, diff --git a/method_inputs/a1/STEP_DOWN_X10_1K/r00000001/n32/meta.json b/method_inputs/a1/STEP_DOWN_X10_1K/r00000001/n32/meta.json index 61b4791d5a28ee0cc74f7c2731098428bddf249b..c677999b06d4a8e183b9f942705657fba938dbaf 100644 --- a/method_inputs/a1/STEP_DOWN_X10_1K/r00000001/n32/meta.json +++ b/method_inputs/a1/STEP_DOWN_X10_1K/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 254847, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "c1a06f2c98b08bd4194ba82d02ee3e1ed67ca97b53d1fd1ba25f7a5b9156c13d", "canonical_id": "4c202f587f87d99fa63fd54d7bdf60279b79941669cc3ec1dca3d7c11b5dd0cb:00000001", @@ -50,7 +50,7 @@ "view.bcf": "2c6ec96ecd24493adcc2c935875485a4aaa48aaeaf531f1bdea733e022f02cde", "view.bcf.csi": "09fa0cf768615713bb77ee52d16afa04f6ad213000fc444668e1c1439bad1453" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "3b94cf3e0d0ffa8071715e49d0b2ede3c103f7f259dc90ca221ffa4bba22ce88", "ladder_columns": [ 16, diff --git a/method_inputs/a1/STEP_DOWN_X10_1K/r00000002/n32/meta.json b/method_inputs/a1/STEP_DOWN_X10_1K/r00000002/n32/meta.json index 3580a2725fc558c476ef15803886175d20902079..2620e612997c5e75e6dc15991f2b12bc5cd1995e 100644 --- a/method_inputs/a1/STEP_DOWN_X10_1K/r00000002/n32/meta.json +++ b/method_inputs/a1/STEP_DOWN_X10_1K/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 254634, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "c1a06f2c98b08bd4194ba82d02ee3e1ed67ca97b53d1fd1ba25f7a5b9156c13d", "canonical_id": "4c202f587f87d99fa63fd54d7bdf60279b79941669cc3ec1dca3d7c11b5dd0cb:00000002", @@ -50,7 +50,7 @@ "view.bcf": "d77697aa15f16c0825ee2c815ad51d308acafbe06e692f140e22b04c3b4239e9", "view.bcf.csi": "a446fa36588224e40fba9d122497f65b453c2c19b57a462baf76552f01cef6b6" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "3b94cf3e0d0ffa8071715e49d0b2ede3c103f7f259dc90ca221ffa4bba22ce88", "ladder_columns": [ 23, diff --git a/method_inputs/a1/STEP_DOWN_X10_1K/r00000003/n32/meta.json b/method_inputs/a1/STEP_DOWN_X10_1K/r00000003/n32/meta.json index fe3af332f4c681f058c7615384374ff61b1999a0..c0632a442f038fd753e9e4063ba33ac82b1ed48a 100644 --- a/method_inputs/a1/STEP_DOWN_X10_1K/r00000003/n32/meta.json +++ b/method_inputs/a1/STEP_DOWN_X10_1K/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 256003, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "c1a06f2c98b08bd4194ba82d02ee3e1ed67ca97b53d1fd1ba25f7a5b9156c13d", "canonical_id": "4c202f587f87d99fa63fd54d7bdf60279b79941669cc3ec1dca3d7c11b5dd0cb:00000003", @@ -50,7 +50,7 @@ "view.bcf": "e637aad4f8ad9b92dca1dc2173c3de60f4a4da497dfc196d38f572e31de678ad", "view.bcf.csi": "7ae37f99711d02fc999a91b9c4fab90c3fbdc7d57c11ac257f6d249145aa77ed" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "3b94cf3e0d0ffa8071715e49d0b2ede3c103f7f259dc90ca221ffa4bba22ce88", "ladder_columns": [ 35, diff --git a/method_inputs/a1/STEP_DOWN_X10_1K/r00000004/n32/meta.json b/method_inputs/a1/STEP_DOWN_X10_1K/r00000004/n32/meta.json index 0b9b03b0ac797f18a71275c1d47533ed690b9012..60a6bccad5c3055bf4d8c3de825227e09e219223 100644 --- a/method_inputs/a1/STEP_DOWN_X10_1K/r00000004/n32/meta.json +++ b/method_inputs/a1/STEP_DOWN_X10_1K/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 255577, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "c1a06f2c98b08bd4194ba82d02ee3e1ed67ca97b53d1fd1ba25f7a5b9156c13d", "canonical_id": "4c202f587f87d99fa63fd54d7bdf60279b79941669cc3ec1dca3d7c11b5dd0cb:00000004", @@ -50,7 +50,7 @@ "view.bcf": "d1c03a1b14a3dd09495dd38ef4176975c77963d50f98067ae25f6bec71bb6609", "view.bcf.csi": "7f64cb884b870577e9f4f926b15845e9804a9939a01df572ab37ad3e883c7991" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "ee21f1e3518791226249bb3e82eadc0c4940b771613d452f41e3e3ece95929ca", "ladder_columns": [ 22, diff --git a/method_inputs/a1/STEP_DOWN_X10_1K/r00000005/n32/meta.json b/method_inputs/a1/STEP_DOWN_X10_1K/r00000005/n32/meta.json index a8d9f910b1003d4ee7507cfe9662e0a9ab124694..8826d77d2d93be4a1ae1a6bd921c3c4875d3e2dd 100644 --- a/method_inputs/a1/STEP_DOWN_X10_1K/r00000005/n32/meta.json +++ b/method_inputs/a1/STEP_DOWN_X10_1K/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 257384, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "c1a06f2c98b08bd4194ba82d02ee3e1ed67ca97b53d1fd1ba25f7a5b9156c13d", "canonical_id": "4c202f587f87d99fa63fd54d7bdf60279b79941669cc3ec1dca3d7c11b5dd0cb:00000005", @@ -50,7 +50,7 @@ "view.bcf": "191f99432088767f17c1fc7b95003b11434719efc0cc011023b48a74d78792cc", "view.bcf.csi": "a8ef0dfa7535340b81db2c3ddce724fb3d4159723c1c16577afd66a30ee35df9" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "ee21f1e3518791226249bb3e82eadc0c4940b771613d452f41e3e3ece95929ca", "ladder_columns": [ 8, diff --git a/method_inputs/a1/STEP_DOWN_X10_1K/r00000006/n32/meta.json b/method_inputs/a1/STEP_DOWN_X10_1K/r00000006/n32/meta.json index d3155d318c17075d6fc6d4c93c7bc8230140dcd4..9afef09dab5409c8ad0b4e5e0812033f8b7a72a6 100644 --- a/method_inputs/a1/STEP_DOWN_X10_1K/r00000006/n32/meta.json +++ b/method_inputs/a1/STEP_DOWN_X10_1K/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 254969, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "c1a06f2c98b08bd4194ba82d02ee3e1ed67ca97b53d1fd1ba25f7a5b9156c13d", "canonical_id": "4c202f587f87d99fa63fd54d7bdf60279b79941669cc3ec1dca3d7c11b5dd0cb:00000006", @@ -50,7 +50,7 @@ "view.bcf": "3622d2e8aec8c2ac93b6bf11a89d93803806c33f50ba1a51e5adfc0dd3378e56", "view.bcf.csi": "cac757d6c805e4fa534ae46675581e89fbf5463d13d010d2df5367e93189ed52" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "ee21f1e3518791226249bb3e82eadc0c4940b771613d452f41e3e3ece95929ca", "ladder_columns": [ 60, diff --git a/method_inputs/a1/STEP_DOWN_X10_1K/r00000007/n32/meta.json b/method_inputs/a1/STEP_DOWN_X10_1K/r00000007/n32/meta.json index 531865bfa3af10d3e8e6559fdc9dcd13f7f7c800..42569db4a410ec2606b73740377bfcde0c205571 100644 --- a/method_inputs/a1/STEP_DOWN_X10_1K/r00000007/n32/meta.json +++ b/method_inputs/a1/STEP_DOWN_X10_1K/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 253235, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "c1a06f2c98b08bd4194ba82d02ee3e1ed67ca97b53d1fd1ba25f7a5b9156c13d", "canonical_id": "4c202f587f87d99fa63fd54d7bdf60279b79941669cc3ec1dca3d7c11b5dd0cb:00000007", @@ -50,7 +50,7 @@ "view.bcf": "a6141e68f92de3ea2afa70fd0b1983bd394ecf4427dfe3fe396c41cb47cce827", "view.bcf.csi": "1e3bbf52041a418d155ff4adc1ea356f998c4e9b24812141327293530a400f32" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "ee21f1e3518791226249bb3e82eadc0c4940b771613d452f41e3e3ece95929ca", "ladder_columns": [ 31, diff --git a/method_inputs/a1/STEP_DOWN_X10_1K/receipts/export_51933457.json b/method_inputs/a1/STEP_DOWN_X10_1K/receipts/export_51933457.json index 982e4eac60cd57be61b6781bb8b874ee3625111e..7883141f681e5a949ecc8536c8d463611bb8bcbe 100644 --- a/method_inputs/a1/STEP_DOWN_X10_1K/receipts/export_51933457.json +++ b/method_inputs/a1/STEP_DOWN_X10_1K/receipts/export_51933457.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_STEP_DOWN_X10_1K", "host": "cn604-18", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_1K/receipts/identity_scan_51933457.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_1K/receipts/identity_scan_51933457.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "6df1ab963677f336864e8ec427c41b082a4dad010eaf789ef71aba99555f2a3e" + "sha256": "41ec46849baac15abae34e2a6580172284896ce43e435880159224ca0e624b9d" }, "job": "51933457", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_1K/receipts/open_audit_51933457.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_1K/receipts/open_audit_51933457.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c1a06f2c98b08bd4194ba82d02ee3e1ed67ca97b53d1fd1ba25f7a5b9156c13d", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_1K/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_1K/r00000000/n32", "files": { "multihetsep.txt": "c7bd6a5b6b188fdb0b958a3fc0d0e95996011876b94b831ad3fa883502a4d5c7", "phlash_contig.npz": "7906bf66356fb43e2aaca9e00c4c08b739a151aff76501c941a7b155a762674d", @@ -54,7 +54,7 @@ "view.bcf": "4e57eaaa1754dfd0bb04be5d42b25435d14592c6075636191a350cebd5a3a0da", "view.bcf.csi": "a5e266768ae63e9ed1a8730e25db04ee2ddf26f86ede3efc4de7c6f895673b04" }, - "meta_sha256": "b51ae05c4dd2c628664551ed6a18f6f539a852d806db67769ab2ce5199d71ea2", + "meta_sha256": "4097ca3d60a5d63dc332c01959d6dd6c55ad0d9a245c1c935876766896c84226", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c1a06f2c98b08bd4194ba82d02ee3e1ed67ca97b53d1fd1ba25f7a5b9156c13d", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_1K/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_1K/r00000001/n32", "files": { "multihetsep.txt": "25d310f019cff93204ea9afe471e5c0734751c0410c15efa36625933489b87e1", "phlash_contig.npz": "3ca5e439e51726efed8a69a91aa816c6239414762bba500b33f9858ea7c8f5ef", @@ -93,7 +93,7 @@ "view.bcf": "2c6ec96ecd24493adcc2c935875485a4aaa48aaeaf531f1bdea733e022f02cde", "view.bcf.csi": "09fa0cf768615713bb77ee52d16afa04f6ad213000fc444668e1c1439bad1453" }, - "meta_sha256": "c368659d1582be1c74111d242cd60ed2f5e5fe4d74e263b35cc9ad8a8398f5d8", + "meta_sha256": "bd4dfdc98a2b89d0f7373980c499b70d0e55214105e58c6ccb2cac3efe4bbe9b", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c1a06f2c98b08bd4194ba82d02ee3e1ed67ca97b53d1fd1ba25f7a5b9156c13d", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_1K/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_1K/r00000002/n32", "files": { "multihetsep.txt": "e17c63e0664609f39380ca49d9af0b81f2b2f2286d2aec7f1bc2a79adf1f55c1", "phlash_contig.npz": "2ba60fe4937a0c0199eede35ca5407ab268dca7620ecd7e8c6f124eb8c643591", @@ -132,7 +132,7 @@ "view.bcf": "d77697aa15f16c0825ee2c815ad51d308acafbe06e692f140e22b04c3b4239e9", "view.bcf.csi": "a446fa36588224e40fba9d122497f65b453c2c19b57a462baf76552f01cef6b6" }, - "meta_sha256": "0d59086220ab0f7cc23db8fa2ebd4c52c12114ab1d36da062f8cfe432374da0e", + "meta_sha256": "c426eb816e6c0f4af9113fd1044c22bfa45ebf3e28946d57db3623304e8a9831", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c1a06f2c98b08bd4194ba82d02ee3e1ed67ca97b53d1fd1ba25f7a5b9156c13d", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_1K/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_1K/r00000003/n32", "files": { "multihetsep.txt": "6f6a5b8208c7bb61f574278899832b0d83dd5a7659e9a3ac7a07176c54be5750", "phlash_contig.npz": "65ce6274a8e7beabdfcf175272159c6e596224e3d0c6a3a185790a26ad604d6f", @@ -171,7 +171,7 @@ "view.bcf": "e637aad4f8ad9b92dca1dc2173c3de60f4a4da497dfc196d38f572e31de678ad", "view.bcf.csi": "7ae37f99711d02fc999a91b9c4fab90c3fbdc7d57c11ac257f6d249145aa77ed" }, - "meta_sha256": "5f0ded48987a5244de8fab19e75fcafce65def38daaf8236f5b2d8a09a5d9530", + "meta_sha256": "0db73dbd013be491ab7eb0a1a74fd20646cef5c83cecf0f6959bc126a601480b", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c1a06f2c98b08bd4194ba82d02ee3e1ed67ca97b53d1fd1ba25f7a5b9156c13d", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_1K/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_1K/r00000004/n32", "files": { "multihetsep.txt": "54961e8b502f2d9a78ed17b90744d0baa802f78c0812218fc491a10378f07b91", "phlash_contig.npz": "f1e6cc83bb7484ea5f8cb82de64b322ef901ee5713ef882ed4a74f98abf70d53", @@ -210,7 +210,7 @@ "view.bcf": "d1c03a1b14a3dd09495dd38ef4176975c77963d50f98067ae25f6bec71bb6609", "view.bcf.csi": "7f64cb884b870577e9f4f926b15845e9804a9939a01df572ab37ad3e883c7991" }, - "meta_sha256": "4490620ca8ea09c94b05451b374537258d56cb26920c7150ad13aa51840223ee", + "meta_sha256": "08b33be738c4ca7ef4365679d8c690d1cfb6f17ba1ac2e91bed0820cfce8b3cd", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c1a06f2c98b08bd4194ba82d02ee3e1ed67ca97b53d1fd1ba25f7a5b9156c13d", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_1K/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_1K/r00000005/n32", "files": { "multihetsep.txt": "e6ef85dc614d5287c26f4ce20a748ad96e65cafd98f4ea552265ce502c55a479", "phlash_contig.npz": "aa1a238d706a8e85a3cca6510efd5f413fc089615318fafcbd6c5210e6809557", @@ -249,7 +249,7 @@ "view.bcf": "191f99432088767f17c1fc7b95003b11434719efc0cc011023b48a74d78792cc", "view.bcf.csi": "a8ef0dfa7535340b81db2c3ddce724fb3d4159723c1c16577afd66a30ee35df9" }, - "meta_sha256": "74e8d7726c206004ea17894da4fcc16660569babe2ef17b80b5863c9ea3f0c16", + "meta_sha256": "32060eb65af834b077c4b766c6ade3152fbccd993a0e119fdfd072c2f622bc33", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c1a06f2c98b08bd4194ba82d02ee3e1ed67ca97b53d1fd1ba25f7a5b9156c13d", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_1K/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_1K/r00000006/n32", "files": { "multihetsep.txt": "50f4d41754e46cc3418d0fb2d35d5f3028552d315605c232a3354acba1aec549", "phlash_contig.npz": "3334e8da1cce71c885b18122d7167b06dada6a97a6fb3b8363121ac6166de27b", @@ -288,7 +288,7 @@ "view.bcf": "3622d2e8aec8c2ac93b6bf11a89d93803806c33f50ba1a51e5adfc0dd3378e56", "view.bcf.csi": "cac757d6c805e4fa534ae46675581e89fbf5463d13d010d2df5367e93189ed52" }, - "meta_sha256": "c63df6dfcede350ac4867bc9cce5bc92f4864af687ae7ff062a771bf370706c4", + "meta_sha256": "8e429d2bc2c9bdb26e927fa73936d351a52be26aacd672254c950605ae30432c", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c1a06f2c98b08bd4194ba82d02ee3e1ed67ca97b53d1fd1ba25f7a5b9156c13d", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_1K/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_1K/r00000007/n32", "files": { "multihetsep.txt": "fab683b4581374d2fa2383f61840cc057b493fe6cc6879b661e5b9586fda6040", "phlash_contig.npz": "296328c0a3bf2f875c0d8930cb91e20851e648a2f5097901e98794715cf75e95", @@ -327,7 +327,7 @@ "view.bcf": "a6141e68f92de3ea2afa70fd0b1983bd394ecf4427dfe3fe396c41cb47cce827", "view.bcf.csi": "1e3bbf52041a418d155ff4adc1ea356f998c4e9b24812141327293530a400f32" }, - "meta_sha256": "1c451caf9b0808a6b0ed15622c33c16f6cb4712a4c059872a2db60276ec270c7", + "meta_sha256": "738e2c37bad0702e8cdd97581c5fcfd7bc3601f9e21f5e756b9d9d60ca3994e9", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/STEP_DOWN_X10_1K/receipts/identity_scan_51933457.json b/method_inputs/a1/STEP_DOWN_X10_1K/receipts/identity_scan_51933457.json index ec0b191a9135d0eaefafdc3b8080df4bad6d6eb8..bc999797da23d90806b6d226c41ea9fbc8258d4b 100644 --- a/method_inputs/a1/STEP_DOWN_X10_1K/receipts/identity_scan_51933457.json +++ b/method_inputs/a1/STEP_DOWN_X10_1K/receipts/identity_scan_51933457.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "4c202f587f87d99fa63fd54d7bdf60279b79941669cc3ec1dca3d7c11b5dd0cb" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T11:04:26Z" diff --git a/method_inputs/a1/STEP_DOWN_X10_1K/receipts/open_audit_51933457.json b/method_inputs/a1/STEP_DOWN_X10_1K/receipts/open_audit_51933457.json index 48f2cfeb1f54182e6ac4ffc8fea9c623c81eaba5..986f1e089b34caadffb644406b68ce0c6a96dd54 100644 --- a/method_inputs/a1/STEP_DOWN_X10_1K/receipts/open_audit_51933457.json +++ b/method_inputs/a1/STEP_DOWN_X10_1K/receipts/open_audit_51933457.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_1K/receipts/identity_scan_51933457.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_1K/receipts/identity_scan_51933457.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_1K/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_1K/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_1K/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - 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"cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "7d5310f8ddb9eab0a7a845dcda288dca450395ad57fe1c441eb27e9bafb63f78", "canonical_id": "be5bfae1346705ccfa92503b4c6fb799175f5df98ef5a17cc67d56b8e183cfdb:00000000", @@ -50,7 +50,7 @@ "view.bcf": "3475f4f707d782cf5be27d99b1db9782d7dc3dd8c83c8a78fe0ccf94f92673f9", "view.bcf.csi": "6e9e6468bd4046f629d66d22ef390e886b63613e8fab1c9f8b5252767d466c85" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "aff9aabf013a3d7a1f02b99e77be5a2e19336b8d021ff1853562b48806a86fa1", "ladder_columns": [ 39, diff --git a/method_inputs/a1/STEP_DOWN_X10_20K/r00000001/n32/meta.json b/method_inputs/a1/STEP_DOWN_X10_20K/r00000001/n32/meta.json index 34595f5b10f1618cede069255ca1eb1605ed8d0e..98f0c5991d662fc4080edcd635cf389b580c56d9 100644 --- a/method_inputs/a1/STEP_DOWN_X10_20K/r00000001/n32/meta.json +++ b/method_inputs/a1/STEP_DOWN_X10_20K/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 64010, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "7d5310f8ddb9eab0a7a845dcda288dca450395ad57fe1c441eb27e9bafb63f78", "canonical_id": "be5bfae1346705ccfa92503b4c6fb799175f5df98ef5a17cc67d56b8e183cfdb:00000001", @@ -50,7 +50,7 @@ "view.bcf": "e20ca2aa1bec56abc15163b7ccabff967ca3e888246f20f54e54700d44249558", "view.bcf.csi": "03c2d9b2f2578c2fa1a7201facee8e14a9711ed804536debb4a8c62bd5397267" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "aff9aabf013a3d7a1f02b99e77be5a2e19336b8d021ff1853562b48806a86fa1", "ladder_columns": [ 16, diff --git a/method_inputs/a1/STEP_DOWN_X10_20K/r00000002/n32/meta.json b/method_inputs/a1/STEP_DOWN_X10_20K/r00000002/n32/meta.json index 47d3056e70f285c992f2cb2721976c2f583a7946..ca771e1d49ce3b2b0760cf98efde8a18781c0fa1 100644 --- a/method_inputs/a1/STEP_DOWN_X10_20K/r00000002/n32/meta.json +++ b/method_inputs/a1/STEP_DOWN_X10_20K/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 61210, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "7d5310f8ddb9eab0a7a845dcda288dca450395ad57fe1c441eb27e9bafb63f78", "canonical_id": "be5bfae1346705ccfa92503b4c6fb799175f5df98ef5a17cc67d56b8e183cfdb:00000002", @@ -50,7 +50,7 @@ "view.bcf": "213aa9a192b9e3991ed03f1df4abd7eb12e70a0c46b9e4717541c7113176346d", "view.bcf.csi": "0655aaf100bee752ade10a800b07ccd5617dd006349f2bdca9cbb29f6432e6ff" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "aff9aabf013a3d7a1f02b99e77be5a2e19336b8d021ff1853562b48806a86fa1", "ladder_columns": [ 23, diff --git a/method_inputs/a1/STEP_DOWN_X10_20K/r00000003/n32/meta.json b/method_inputs/a1/STEP_DOWN_X10_20K/r00000003/n32/meta.json index af02124f014a5aa20ec4ec5859397fb1bdcb1909..7dafee7a37463e7039066552ac5f75457c21a010 100644 --- a/method_inputs/a1/STEP_DOWN_X10_20K/r00000003/n32/meta.json +++ b/method_inputs/a1/STEP_DOWN_X10_20K/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 61393, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "7d5310f8ddb9eab0a7a845dcda288dca450395ad57fe1c441eb27e9bafb63f78", "canonical_id": "be5bfae1346705ccfa92503b4c6fb799175f5df98ef5a17cc67d56b8e183cfdb:00000003", @@ -50,7 +50,7 @@ "view.bcf": "598cf9c6ea805058b0862a5aa8ef479221d1cb1c204c5ba03c7ddebee9a60636", "view.bcf.csi": "896491436219f803ebd9706e3302313c7dddb191eca5c3bd9de1875b779d884a" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "aff9aabf013a3d7a1f02b99e77be5a2e19336b8d021ff1853562b48806a86fa1", "ladder_columns": [ 35, diff --git a/method_inputs/a1/STEP_DOWN_X10_20K/r00000004/n32/meta.json b/method_inputs/a1/STEP_DOWN_X10_20K/r00000004/n32/meta.json index d9a746da6ea44cf82f1dcfbc377bd60519bab885..82671befe328dbd1d04592ca02d0c0b2acc9ac1a 100644 --- a/method_inputs/a1/STEP_DOWN_X10_20K/r00000004/n32/meta.json +++ b/method_inputs/a1/STEP_DOWN_X10_20K/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 61586, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "7d5310f8ddb9eab0a7a845dcda288dca450395ad57fe1c441eb27e9bafb63f78", "canonical_id": "be5bfae1346705ccfa92503b4c6fb799175f5df98ef5a17cc67d56b8e183cfdb:00000004", @@ -50,7 +50,7 @@ "view.bcf": "e00a155c9fb0ba41309f19b3c4b626293b89340a2c1b80af02432f835bce1c9d", "view.bcf.csi": "4e44fb73e6c41de7887bf4f815556fff299c2cdb0067275a95ec275b52b3d406" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "dab1ebbfbd5102146a1ea0fc97b2d1c620e4686d253413645cb5acae2bb6fb3c", "ladder_columns": [ 22, diff --git a/method_inputs/a1/STEP_DOWN_X10_20K/r00000005/n32/meta.json b/method_inputs/a1/STEP_DOWN_X10_20K/r00000005/n32/meta.json index 7049ba6aab689061de587e3c2aa827135838c393..667afb6deae47206109129f65bef47d8908d0bdc 100644 --- a/method_inputs/a1/STEP_DOWN_X10_20K/r00000005/n32/meta.json +++ b/method_inputs/a1/STEP_DOWN_X10_20K/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 59201, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "7d5310f8ddb9eab0a7a845dcda288dca450395ad57fe1c441eb27e9bafb63f78", "canonical_id": "be5bfae1346705ccfa92503b4c6fb799175f5df98ef5a17cc67d56b8e183cfdb:00000005", @@ -50,7 +50,7 @@ "view.bcf": "a81f83be5980f71940ec1ad9c60993b8d16e1db74d86c854d772b043f4527d30", "view.bcf.csi": "5b3e338a3938e607401a19b0dc395fa42a13580c5a827e2880deadbb0542bf68" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "dab1ebbfbd5102146a1ea0fc97b2d1c620e4686d253413645cb5acae2bb6fb3c", "ladder_columns": [ 8, diff --git a/method_inputs/a1/STEP_DOWN_X10_20K/r00000006/n32/meta.json b/method_inputs/a1/STEP_DOWN_X10_20K/r00000006/n32/meta.json index 18aa216de90b316404c5ff5ba867f45cab0e1045..e7b341fdab641041daca81d16a87810979fe1acc 100644 --- a/method_inputs/a1/STEP_DOWN_X10_20K/r00000006/n32/meta.json +++ b/method_inputs/a1/STEP_DOWN_X10_20K/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 58542, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "7d5310f8ddb9eab0a7a845dcda288dca450395ad57fe1c441eb27e9bafb63f78", "canonical_id": "be5bfae1346705ccfa92503b4c6fb799175f5df98ef5a17cc67d56b8e183cfdb:00000006", @@ -50,7 +50,7 @@ "view.bcf": "e61c1a5eb0823be7a7b80c2cb424a42ea7e30a9662ca252e776ece4017e1abbf", "view.bcf.csi": "8e73e616628d532f03bf1c963c1358df5bd2f027ed9be80e33b7a3042f67977d" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "dab1ebbfbd5102146a1ea0fc97b2d1c620e4686d253413645cb5acae2bb6fb3c", "ladder_columns": [ 60, diff --git a/method_inputs/a1/STEP_DOWN_X10_20K/r00000007/n32/meta.json b/method_inputs/a1/STEP_DOWN_X10_20K/r00000007/n32/meta.json index cd76235178ae6a23ce5e6dca88e44f0d1e199182..05ade11f220a0517a7e256e1d8f4c3789047632e 100644 --- a/method_inputs/a1/STEP_DOWN_X10_20K/r00000007/n32/meta.json +++ b/method_inputs/a1/STEP_DOWN_X10_20K/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 60439, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "7d5310f8ddb9eab0a7a845dcda288dca450395ad57fe1c441eb27e9bafb63f78", "canonical_id": "be5bfae1346705ccfa92503b4c6fb799175f5df98ef5a17cc67d56b8e183cfdb:00000007", @@ -50,7 +50,7 @@ "view.bcf": "d9d9a10270649877686108bb22d29f11ae22fcc54c7e386562f8850adab0c581", "view.bcf.csi": "061e69e369aa441f84881a9b209cf3045cb866353d17de9c276063df9a817d65" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "dab1ebbfbd5102146a1ea0fc97b2d1c620e4686d253413645cb5acae2bb6fb3c", "ladder_columns": [ 31, diff --git a/method_inputs/a1/STEP_DOWN_X10_20K/receipts/export_51933461.json b/method_inputs/a1/STEP_DOWN_X10_20K/receipts/export_51933461.json index 4b39c9dda013993a47e9028c9698f0fd39a6ba34..76f78f19c48dc3e7c02e28cf965d4f46c62c25a2 100644 --- a/method_inputs/a1/STEP_DOWN_X10_20K/receipts/export_51933461.json +++ b/method_inputs/a1/STEP_DOWN_X10_20K/receipts/export_51933461.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_STEP_DOWN_X10_20K", "host": "cn604-18", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_20K/receipts/identity_scan_51933461.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_20K/receipts/identity_scan_51933461.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "30da71edf5418643fdba56c6dafcf9e46bcbc9d96848a0b084f3d075f3089d5d" + "sha256": "237c12cf44cdeb33da9266d047e383497ea63d01a084979df7ea332482b00732" }, "job": "51933461", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_20K/receipts/open_audit_51933461.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_20K/receipts/open_audit_51933461.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "7d5310f8ddb9eab0a7a845dcda288dca450395ad57fe1c441eb27e9bafb63f78", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_20K/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_20K/r00000000/n32", "files": { "multihetsep.txt": "15e9803d2801ca4a1bc341a6932bfed6d9c364fe950fc4e028545f6516c35ec4", "phlash_contig.npz": "17dc4f2c9824648cf7daeb36c34142d4cd62343a4a268a86e0ac73794bd8c31c", @@ -54,7 +54,7 @@ "view.bcf": "3475f4f707d782cf5be27d99b1db9782d7dc3dd8c83c8a78fe0ccf94f92673f9", "view.bcf.csi": "6e9e6468bd4046f629d66d22ef390e886b63613e8fab1c9f8b5252767d466c85" }, - "meta_sha256": "415194e1a4a1ba6201a1df4e0306faafc759797aa34cba4594eb72f48170b96e", + "meta_sha256": "8bef07b129366072fda73723d5c510ddff552fdb8d9cbd1513732dd27fce1464", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "7d5310f8ddb9eab0a7a845dcda288dca450395ad57fe1c441eb27e9bafb63f78", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_20K/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_20K/r00000001/n32", "files": { "multihetsep.txt": "8077e3ffba5fde72570c02204bc26d7f5f9de69f1cad20240d7695c48caca0a2", "phlash_contig.npz": "1268c9556aa3468beace61e9568fb55448363b91fe11fc52b7d3c9d1a649c3c8", @@ -93,7 +93,7 @@ "view.bcf": "e20ca2aa1bec56abc15163b7ccabff967ca3e888246f20f54e54700d44249558", "view.bcf.csi": "03c2d9b2f2578c2fa1a7201facee8e14a9711ed804536debb4a8c62bd5397267" }, - "meta_sha256": "0778f4ff2ee92e9bf6e2e4a5d46dbac1016ef281e7e8fb3fd704e39d44524518", + "meta_sha256": "d05e40a23aa0362f86c1070f5bbc24a95fe94d6f5e9df61595db6a9930fb14a6", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "7d5310f8ddb9eab0a7a845dcda288dca450395ad57fe1c441eb27e9bafb63f78", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_20K/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_20K/r00000002/n32", "files": { "multihetsep.txt": "b0c54ffccb7e1ac15563dad76d7756e65571db331b2b33917b12c05822562791", "phlash_contig.npz": "7025ee6d712d8485516ae90e72feef9c02989471d6817493ffd1203d1accefb8", @@ -132,7 +132,7 @@ "view.bcf": "213aa9a192b9e3991ed03f1df4abd7eb12e70a0c46b9e4717541c7113176346d", "view.bcf.csi": "0655aaf100bee752ade10a800b07ccd5617dd006349f2bdca9cbb29f6432e6ff" }, - "meta_sha256": "f1b4c5948f1d6f55a763c313f55989077c03db9c8cfd6cb723bf41becd5997f3", + "meta_sha256": "b3a222ca356b19a355b13d3b3b6125dc7a44e57416b6d44772c8b7533cec8257", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "7d5310f8ddb9eab0a7a845dcda288dca450395ad57fe1c441eb27e9bafb63f78", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_20K/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_20K/r00000003/n32", "files": { "multihetsep.txt": "431f7163c283ee33d7f8e811a937316da190f5c40c73928b568847dfbd867984", "phlash_contig.npz": "f310454d0dbc0c38d122e1c8a7d169b9fae730b00152de31d0debcf8c246d1fa", @@ -171,7 +171,7 @@ "view.bcf": "598cf9c6ea805058b0862a5aa8ef479221d1cb1c204c5ba03c7ddebee9a60636", "view.bcf.csi": "896491436219f803ebd9706e3302313c7dddb191eca5c3bd9de1875b779d884a" }, - "meta_sha256": "613848e8a31618893b2c400367d4a81aa46a9e5736ef001434e889e372877226", + "meta_sha256": "7d5cc377a489e9f4aca1c7a1fa5165a7d59234174d0caaf008974ed3e73db024", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "7d5310f8ddb9eab0a7a845dcda288dca450395ad57fe1c441eb27e9bafb63f78", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_20K/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_20K/r00000004/n32", "files": { "multihetsep.txt": "44dad138b6ef2999cbba9d21d06218171c3a511638742cacba4edce73d81a39b", "phlash_contig.npz": "0dd76bc5b8327f715952103b0dda729af6bb05ba5b87c88b322ff8cc44974f8a", @@ -210,7 +210,7 @@ "view.bcf": "e00a155c9fb0ba41309f19b3c4b626293b89340a2c1b80af02432f835bce1c9d", "view.bcf.csi": "4e44fb73e6c41de7887bf4f815556fff299c2cdb0067275a95ec275b52b3d406" }, - "meta_sha256": "a00063c07abef13406cebcc2860990eb05fbcede3da04177e35d8d6ab644c964", + "meta_sha256": "f3b4be6e081b387fcacd5fa719f48a2eb90fd56fa6e6ec63efbbfe4dbe85f442", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "7d5310f8ddb9eab0a7a845dcda288dca450395ad57fe1c441eb27e9bafb63f78", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_20K/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_20K/r00000005/n32", "files": { "multihetsep.txt": "cea13ae706467d9f8002fad5a18075a5255dbd03fb9653bbe6c7e0484d196fc1", "phlash_contig.npz": "cb8301ac26e2ef32df99c92d5013801a47c81cab75482341767c78dc6ce7502a", @@ -249,7 +249,7 @@ "view.bcf": "a81f83be5980f71940ec1ad9c60993b8d16e1db74d86c854d772b043f4527d30", "view.bcf.csi": "5b3e338a3938e607401a19b0dc395fa42a13580c5a827e2880deadbb0542bf68" }, - "meta_sha256": "d0317f261e42c7ef83784ee7a4a9c8fa36f485d3d3f490f4911475548d643762", + "meta_sha256": "015c6db7b97d9a53dd32aebe241429785555c1e9115db9ba45adbf627312ee05", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "7d5310f8ddb9eab0a7a845dcda288dca450395ad57fe1c441eb27e9bafb63f78", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_20K/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_20K/r00000006/n32", "files": { "multihetsep.txt": "51815d7370a79e5fa2cef242d45366301f3293a0def55c86f9fc87de7f10d9e1", "phlash_contig.npz": "e28fdb7e3d4dd4889d3c9b78e1167024396bcc711cddacde2fd75c338ce34f49", @@ -288,7 +288,7 @@ "view.bcf": "e61c1a5eb0823be7a7b80c2cb424a42ea7e30a9662ca252e776ece4017e1abbf", "view.bcf.csi": "8e73e616628d532f03bf1c963c1358df5bd2f027ed9be80e33b7a3042f67977d" }, - "meta_sha256": "9d2863afebb0d67b105e40678264ab3a20297b47f8cbfac1317cf6f7b89bfd68", + "meta_sha256": "fcace0b0e861c14860faef64ea6d3eeed6b0e31d7cf563ef781444550c2457e4", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "7d5310f8ddb9eab0a7a845dcda288dca450395ad57fe1c441eb27e9bafb63f78", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_20K/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_DOWN_X10_20K/r00000007/n32", "files": { "multihetsep.txt": "073b0408565e3575628ed858c67e1a1f0061c0cb9018cf379d20a221d4ac168b", "phlash_contig.npz": "30b151bec599174fa7179727b81e2a35023a49d2ef4bd1f3fc7ec0b92cd83642", @@ -327,7 +327,7 @@ "view.bcf": "d9d9a10270649877686108bb22d29f11ae22fcc54c7e386562f8850adab0c581", "view.bcf.csi": "061e69e369aa441f84881a9b209cf3045cb866353d17de9c276063df9a817d65" }, - "meta_sha256": "6b33f1e707154f708f3d8c3f2e3c8a5cdbcf3a4cc57fec2b24487381f678373b", + "meta_sha256": "b17fc9b374a3fdc983e6105413eeaab28c3976e44c104a9df1426b353eb77b1c", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/STEP_DOWN_X10_20K/receipts/identity_scan_51933461.json b/method_inputs/a1/STEP_DOWN_X10_20K/receipts/identity_scan_51933461.json index 4bdc521d937c66927f0bd8a843c4eb7ee0f38efa..3483b5f57098cf11b66be98e654ba896766fab95 100644 --- a/method_inputs/a1/STEP_DOWN_X10_20K/receipts/identity_scan_51933461.json +++ b/method_inputs/a1/STEP_DOWN_X10_20K/receipts/identity_scan_51933461.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "be5bfae1346705ccfa92503b4c6fb799175f5df98ef5a17cc67d56b8e183cfdb" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T11:04:32Z" diff --git a/method_inputs/a1/STEP_DOWN_X10_20K/receipts/open_audit_51933461.json b/method_inputs/a1/STEP_DOWN_X10_20K/receipts/open_audit_51933461.json index 5f3f88473efe0cf341103ec52aec0f4b215419df..bc0c06957b8a7f04774d619dd3ff7a460e14ed73 100644 --- a/method_inputs/a1/STEP_DOWN_X10_20K/receipts/open_audit_51933461.json +++ b/method_inputs/a1/STEP_DOWN_X10_20K/receipts/open_audit_51933461.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - 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"cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "3704660335407e8820e3dc574306bce1ce3efd7c13796b7a35b0fef04fa0b32f", "canonical_id": "f8de9994494eb56cdd925b45867bd0050b6e8c7e46ef2ffad953a4b817cc7607:00000001", @@ -50,7 +50,7 @@ "view.bcf": "982459f337f4e3818cdbc0c056a42b25c22e4fbdc27c90fb23c6543a5d376179", "view.bcf.csi": "614c48cbf4fa356812ff0ea4bb268355028f6432a321c719d2bf5f039358a34a" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "ffd359ccbc7af574c8c9b72bb79ab1f34d12625db2211223d5a3651bddbbe98d", "ladder_columns": [ 16, diff --git a/method_inputs/a1/STEP_UP_X10_1K/r00000002/n32/meta.json b/method_inputs/a1/STEP_UP_X10_1K/r00000002/n32/meta.json index 24994529b5be78be7f713ef2ccb2cd97d67eaa5e..dc7a36d66fa7c858d0305efa4ce6a6e5e649fd6b 100644 --- a/method_inputs/a1/STEP_UP_X10_1K/r00000002/n32/meta.json +++ b/method_inputs/a1/STEP_UP_X10_1K/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 54129, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "3704660335407e8820e3dc574306bce1ce3efd7c13796b7a35b0fef04fa0b32f", "canonical_id": "f8de9994494eb56cdd925b45867bd0050b6e8c7e46ef2ffad953a4b817cc7607:00000002", @@ -50,7 +50,7 @@ "view.bcf": "687c91a3e3d7ba469ce40e57a4eccde674b2ae3d367659198811670f1e22a456", "view.bcf.csi": "ffe7421bb58b40ba93dd729d4f95c1e4a2cc6ec6d153f5c3623bd52b8b4c58a7" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "ffd359ccbc7af574c8c9b72bb79ab1f34d12625db2211223d5a3651bddbbe98d", "ladder_columns": [ 23, diff --git a/method_inputs/a1/STEP_UP_X10_1K/r00000003/n32/meta.json b/method_inputs/a1/STEP_UP_X10_1K/r00000003/n32/meta.json index 846784f55ce28744a06efdc34ce8c32061c8b13c..f19c33ba40e79e76ad3b435ba1579a67c0681737 100644 --- a/method_inputs/a1/STEP_UP_X10_1K/r00000003/n32/meta.json +++ b/method_inputs/a1/STEP_UP_X10_1K/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 54599, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "3704660335407e8820e3dc574306bce1ce3efd7c13796b7a35b0fef04fa0b32f", "canonical_id": "f8de9994494eb56cdd925b45867bd0050b6e8c7e46ef2ffad953a4b817cc7607:00000003", @@ -50,7 +50,7 @@ "view.bcf": "d0e2545bfb5b1c8e8bac6c11f699f6c4828d058fb30f50d0877c9a6dc8ccc824", "view.bcf.csi": "84d5db29a5688fbe1d07540078a569f1e2fbae7fa14fb5fec02955002c841f2f" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "ffd359ccbc7af574c8c9b72bb79ab1f34d12625db2211223d5a3651bddbbe98d", "ladder_columns": [ 35, diff --git a/method_inputs/a1/STEP_UP_X10_1K/r00000004/n32/meta.json b/method_inputs/a1/STEP_UP_X10_1K/r00000004/n32/meta.json index be697d8b7996aeadc694bf9ad5e29085578a3dde..3f978885f4353d4e69788e94a9e8eda24d789371 100644 --- a/method_inputs/a1/STEP_UP_X10_1K/r00000004/n32/meta.json +++ b/method_inputs/a1/STEP_UP_X10_1K/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 54469, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "3704660335407e8820e3dc574306bce1ce3efd7c13796b7a35b0fef04fa0b32f", "canonical_id": "f8de9994494eb56cdd925b45867bd0050b6e8c7e46ef2ffad953a4b817cc7607:00000004", @@ -50,7 +50,7 @@ "view.bcf": "b1a0cc84974d1818e92dec0e470f8cb79e079bc7c7542a94b35dc911a066d09b", "view.bcf.csi": "f75894785720ccc00ab3ace37b831e627a9f5158560e5af2470df150863aff1c" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "39c44c6befe08c0beefb07fbe0c30bf74ad59251a635f9504ed1a5e5af675ba0", "ladder_columns": [ 22, diff --git a/method_inputs/a1/STEP_UP_X10_1K/r00000005/n32/meta.json b/method_inputs/a1/STEP_UP_X10_1K/r00000005/n32/meta.json index 4efcb85fa977abbc0569d101dcb7ed17c3b15ba3..b780d557be6ed99fb2c8bb7bed08ced3c4c913cd 100644 --- a/method_inputs/a1/STEP_UP_X10_1K/r00000005/n32/meta.json +++ b/method_inputs/a1/STEP_UP_X10_1K/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 53244, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "3704660335407e8820e3dc574306bce1ce3efd7c13796b7a35b0fef04fa0b32f", "canonical_id": "f8de9994494eb56cdd925b45867bd0050b6e8c7e46ef2ffad953a4b817cc7607:00000005", @@ -50,7 +50,7 @@ "view.bcf": "c81a1cf365955349f2f23194b3a0467658d6adc02984b79d78ab3d89a786deb2", "view.bcf.csi": "046a937f62065c1d2624ef1c5720bcc6ac6bc969d4128f206794223738cedc64" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "39c44c6befe08c0beefb07fbe0c30bf74ad59251a635f9504ed1a5e5af675ba0", "ladder_columns": [ 8, diff --git a/method_inputs/a1/STEP_UP_X10_1K/r00000006/n32/meta.json b/method_inputs/a1/STEP_UP_X10_1K/r00000006/n32/meta.json index e479bd2c36f2143773e0b4ccbf9f0848cd6c1ebe..ab8936aa9fb5b904af586065391b9e0e73cd938e 100644 --- a/method_inputs/a1/STEP_UP_X10_1K/r00000006/n32/meta.json +++ b/method_inputs/a1/STEP_UP_X10_1K/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 54756, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "3704660335407e8820e3dc574306bce1ce3efd7c13796b7a35b0fef04fa0b32f", "canonical_id": "f8de9994494eb56cdd925b45867bd0050b6e8c7e46ef2ffad953a4b817cc7607:00000006", @@ -50,7 +50,7 @@ "view.bcf": "bec2c1813fa1b96206d96b09484d82e4f3ceb347085cb234b550ffb38c868d0c", "view.bcf.csi": "d71bc6137b0a683fc4ad36e71be75b007d43963b573ab36758b10bfb6fad9a35" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "39c44c6befe08c0beefb07fbe0c30bf74ad59251a635f9504ed1a5e5af675ba0", "ladder_columns": [ 60, diff --git a/method_inputs/a1/STEP_UP_X10_1K/r00000007/n32/meta.json b/method_inputs/a1/STEP_UP_X10_1K/r00000007/n32/meta.json index f5c1fe4b60056860fed38f7200d9eaa0dcfd5e27..69c449ca5e3ee4763ceb0ce41c3e03af0c2fbe49 100644 --- a/method_inputs/a1/STEP_UP_X10_1K/r00000007/n32/meta.json +++ b/method_inputs/a1/STEP_UP_X10_1K/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 54353, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "3704660335407e8820e3dc574306bce1ce3efd7c13796b7a35b0fef04fa0b32f", "canonical_id": "f8de9994494eb56cdd925b45867bd0050b6e8c7e46ef2ffad953a4b817cc7607:00000007", @@ -50,7 +50,7 @@ "view.bcf": "d0e1bd6f0243e7b5bd6c65a7f8b4e1499257fea9ca2e9451d8678fbded2ac2e5", "view.bcf.csi": "8567a34263dc007f052590ab40f022108125ef41b344517ed35e2b5af4b3f15a" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "39c44c6befe08c0beefb07fbe0c30bf74ad59251a635f9504ed1a5e5af675ba0", "ladder_columns": [ 31, diff --git a/method_inputs/a1/STEP_UP_X10_1K/receipts/export_51933452.json b/method_inputs/a1/STEP_UP_X10_1K/receipts/export_51933452.json index f2dee7296d88aa70db46999c39331e900b0e0fa3..3eb6fa8e75a8fb9aa45df89322415b64ec33521b 100644 --- a/method_inputs/a1/STEP_UP_X10_1K/receipts/export_51933452.json +++ b/method_inputs/a1/STEP_UP_X10_1K/receipts/export_51933452.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_STEP_UP_X10_1K", "host": "cn604-18", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_1K/receipts/identity_scan_51933452.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_1K/receipts/identity_scan_51933452.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "0b3788e552fdb7aeae1fa755db376c62c8942e37a84d4c1b2a6586555bd29add" + "sha256": "2d391d8f9761aeebcd04b5afe6bc2c755634d99c72d871f0930978234c0208eb" }, "job": "51933452", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_1K/receipts/open_audit_51933452.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_1K/receipts/open_audit_51933452.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3704660335407e8820e3dc574306bce1ce3efd7c13796b7a35b0fef04fa0b32f", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_1K/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_1K/r00000000/n32", "files": { "multihetsep.txt": "f6b64b0c8d6355c4882519b509e641bc04f52b7d7c4356190afbc78496339df3", "phlash_contig.npz": "75dc312575738908f09d128ee0dde4e7bc06a07c4ca4a996fb54d4451a9ffc99", @@ -54,7 +54,7 @@ "view.bcf": "79d4a5555a09d56c462f22eee603773275dcc61b2dead957c197169aef44d9e3", "view.bcf.csi": "eeb1c16b1ab2406a5dbf258988d53f16fa2393170637542b5f8a9076ee3282d8" }, - "meta_sha256": "33b123afcdf7f8f02bdde1715d197866754dad121aa63f96e51041635dc603b0", + "meta_sha256": "e60559d15189d03bf62d503051fc9d7c5ae9a984de3cd998e039676e282316bd", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3704660335407e8820e3dc574306bce1ce3efd7c13796b7a35b0fef04fa0b32f", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_1K/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_1K/r00000001/n32", "files": { "multihetsep.txt": "5825426046c73a45c286442b5c552ac43fc78869cd2bae0dd82887007e691f4b", "phlash_contig.npz": "def28c4b456620b14f1634c92e3d63ea1fa94d8faca6b6c6e98bc730a81f1056", @@ -93,7 +93,7 @@ "view.bcf": "982459f337f4e3818cdbc0c056a42b25c22e4fbdc27c90fb23c6543a5d376179", "view.bcf.csi": "614c48cbf4fa356812ff0ea4bb268355028f6432a321c719d2bf5f039358a34a" }, - "meta_sha256": "db614295eed8c8b0d71677fe24ba4d0ab5e9df11dc573442fb52e5a2b9ce6031", + "meta_sha256": "03270072a6e611621c715c58b046aac2eea9de8ef5921e826cb1569fe1ec3692", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3704660335407e8820e3dc574306bce1ce3efd7c13796b7a35b0fef04fa0b32f", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_1K/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_1K/r00000002/n32", "files": { "multihetsep.txt": "506a9aeacd88cbd179fadf27eec1e7dd3424f484cd48e1c06ed9bd0e2e3a5e8e", "phlash_contig.npz": "77dec19b6eb77c55330799b51e1e3bbdd7044a76545747943c6ca724007a064a", @@ -132,7 +132,7 @@ "view.bcf": "687c91a3e3d7ba469ce40e57a4eccde674b2ae3d367659198811670f1e22a456", "view.bcf.csi": "ffe7421bb58b40ba93dd729d4f95c1e4a2cc6ec6d153f5c3623bd52b8b4c58a7" }, - "meta_sha256": "bf116269a80d99cadfbac13292200ce68fe2e9654b6eb01152ae6394d2033d1a", + "meta_sha256": "1cc335af9b7160a36c9553d123adbd5c3647cb34faa21176c70d63d91e0b2932", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3704660335407e8820e3dc574306bce1ce3efd7c13796b7a35b0fef04fa0b32f", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_1K/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_1K/r00000003/n32", "files": { "multihetsep.txt": "14c322ce9e03bb05f665cf7d9692f6bfc19e8b40447c1765de488495ed102660", "phlash_contig.npz": "c4f1391b0004aaf4b7da4c6887e042288cbc467341067702d7a681b1342d14f7", @@ -171,7 +171,7 @@ "view.bcf": "d0e2545bfb5b1c8e8bac6c11f699f6c4828d058fb30f50d0877c9a6dc8ccc824", "view.bcf.csi": "84d5db29a5688fbe1d07540078a569f1e2fbae7fa14fb5fec02955002c841f2f" }, - "meta_sha256": "7aaebbf2de770b08404b245a3043ac93877103c58e3278500dc814d8e6ccf0a7", + "meta_sha256": "84679cdebba9cf2fd1a21c7054bc96aa04d9b10bc15cc1cb4661a759f37d4a7d", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3704660335407e8820e3dc574306bce1ce3efd7c13796b7a35b0fef04fa0b32f", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_1K/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_1K/r00000004/n32", "files": { "multihetsep.txt": "a8b3eba98781402a5ab2127f014c3423c8ed9fb1570d0c40cc1255438e0dfe35", "phlash_contig.npz": "93f8eaf68ca6cb2ae23edb93320bf145e9549ad1288afd49104e60d7c70118c3", @@ -210,7 +210,7 @@ "view.bcf": "b1a0cc84974d1818e92dec0e470f8cb79e079bc7c7542a94b35dc911a066d09b", "view.bcf.csi": "f75894785720ccc00ab3ace37b831e627a9f5158560e5af2470df150863aff1c" }, - "meta_sha256": "97ab32f3aa74a7441e04a429637b51cfd4881fdc011387918d9a20a9aefc2bc4", + "meta_sha256": "1296fd6e5796bd0f39b56161db57b26cb1a86aa0e6dc250b276f81a2806dcda3", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3704660335407e8820e3dc574306bce1ce3efd7c13796b7a35b0fef04fa0b32f", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_1K/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_1K/r00000005/n32", "files": { "multihetsep.txt": "7a56bfdf700cd60991278f11a842c63c9a160e62818fcc69cf1e837cfa1a63cc", "phlash_contig.npz": "9ec88ce76d3fae87f815f9d850e0be158f70ffb32051aa68250f8ac613cf4567", @@ -249,7 +249,7 @@ "view.bcf": "c81a1cf365955349f2f23194b3a0467658d6adc02984b79d78ab3d89a786deb2", "view.bcf.csi": "046a937f62065c1d2624ef1c5720bcc6ac6bc969d4128f206794223738cedc64" }, - "meta_sha256": "cba3f9e3f6c53cd0f1a0353de6eb38e39b6f6a6f6f2423a45fd7b8d3fc08f334", + "meta_sha256": "94a1b320555f7af47443dea126658caefe1d52830d638d2ed855b3b55e575141", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3704660335407e8820e3dc574306bce1ce3efd7c13796b7a35b0fef04fa0b32f", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_1K/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_1K/r00000006/n32", "files": { "multihetsep.txt": "6e3cf5460f7610d361163873d91d7a074ecaafb398f00ee0cf1d12890f865c56", "phlash_contig.npz": "6d152c29222cb04cc893565734f842641d31a07c4f598b5d40700d6a89d0c171", @@ -288,7 +288,7 @@ "view.bcf": "bec2c1813fa1b96206d96b09484d82e4f3ceb347085cb234b550ffb38c868d0c", "view.bcf.csi": "d71bc6137b0a683fc4ad36e71be75b007d43963b573ab36758b10bfb6fad9a35" }, - "meta_sha256": "264da5617b3897e5350456dc0610aebcf6af6a703781b99f74d02c895204e16f", + "meta_sha256": "d66691bf33d32ea225155bf73e2b701c70dead0cbcc63181640a235c0d38e642", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "3704660335407e8820e3dc574306bce1ce3efd7c13796b7a35b0fef04fa0b32f", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_1K/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_1K/r00000007/n32", "files": { "multihetsep.txt": "9ec2e3fba5ac3fbd6f9c5bc9ac52b0982136ffdd16e099ff4ff699fefa953d43", "phlash_contig.npz": "21d2d517e0747c684bc4550cd9a8740aad953449e0932e811dbca64bb57b032c", @@ -327,7 +327,7 @@ "view.bcf": "d0e1bd6f0243e7b5bd6c65a7f8b4e1499257fea9ca2e9451d8678fbded2ac2e5", "view.bcf.csi": "8567a34263dc007f052590ab40f022108125ef41b344517ed35e2b5af4b3f15a" }, - "meta_sha256": "669ac6ff138b9c0c7fe3d4ca76183787b0825345565894d5f884e44482aaaa6f", + "meta_sha256": "0d3482d721667094d05f345f6457085249294d0b9065172fb0f4ac85345feaa1", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/STEP_UP_X10_1K/receipts/identity_scan_51933452.json b/method_inputs/a1/STEP_UP_X10_1K/receipts/identity_scan_51933452.json index 336ca7e2087c17d8c7bbe2f2b3ab955feddd3402..3fcf37f1897655215b12b582da79fc49572f285e 100644 --- a/method_inputs/a1/STEP_UP_X10_1K/receipts/identity_scan_51933452.json +++ b/method_inputs/a1/STEP_UP_X10_1K/receipts/identity_scan_51933452.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "f8de9994494eb56cdd925b45867bd0050b6e8c7e46ef2ffad953a4b817cc7607" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T11:04:15Z" diff --git a/method_inputs/a1/STEP_UP_X10_1K/receipts/open_audit_51933452.json b/method_inputs/a1/STEP_UP_X10_1K/receipts/open_audit_51933452.json index 084f7bb0079623904b0685156f07775c3bacce1b..1b66b78c67f551fb27dd713bc84ba476b09bdcb7 100644 --- a/method_inputs/a1/STEP_UP_X10_1K/receipts/open_audit_51933452.json +++ b/method_inputs/a1/STEP_UP_X10_1K/receipts/open_audit_51933452.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_1K/receipts/identity_scan_51933452.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_1K/receipts/identity_scan_51933452.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_1K/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_1K/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - 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"cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "53e9e3b5d1bb91a952a216371e7513634abd85eae8483a86119d392b773853b5", "canonical_id": "20c72ee8c363d03d536260bf312f2fb99264b5f7eb8452e4d117a0242138ea3f:00000004", @@ -50,7 +50,7 @@ "view.bcf": "7870aede08fae7f93c93d02fe82c9ed2d0e8dc154454162bc69f1165219baecf", "view.bcf.csi": "9e34e4e7841f7c3fcb25e66a1cfde30dd0474519c70439a47ed46822a6c9b9d9" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_20K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_20K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "ad19f7c1a7cc7f21d66bf2b45a0a16b46316c4320dc5418188d121fe14062119", "ladder_columns": [ 22, diff --git a/method_inputs/a1/STEP_UP_X10_20K/r00000005/n32/meta.json b/method_inputs/a1/STEP_UP_X10_20K/r00000005/n32/meta.json index fc1a5a124fc3788e2aab527d71bbe2fffd4f66df..f22c41310f8f9c16a375c307d7a10a2b8065af02 100644 --- a/method_inputs/a1/STEP_UP_X10_20K/r00000005/n32/meta.json +++ b/method_inputs/a1/STEP_UP_X10_20K/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 170715, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "53e9e3b5d1bb91a952a216371e7513634abd85eae8483a86119d392b773853b5", "canonical_id": "20c72ee8c363d03d536260bf312f2fb99264b5f7eb8452e4d117a0242138ea3f:00000005", @@ -50,7 +50,7 @@ "view.bcf": "aec9de102d24f7719256aa6c8c6f497691cfce6f332e9d7e7aa3ed53fb0b6909", "view.bcf.csi": "b54d401d5c961c6da89972336a389bfa8d86edd9f351348840bb94af0488c71f" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_20K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_20K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "ad19f7c1a7cc7f21d66bf2b45a0a16b46316c4320dc5418188d121fe14062119", "ladder_columns": [ 8, diff --git a/method_inputs/a1/STEP_UP_X10_20K/r00000006/n32/meta.json b/method_inputs/a1/STEP_UP_X10_20K/r00000006/n32/meta.json index f1916f64656fac9d569610527dacf70f0a4833bc..24e219a9d120adc1b4bbf03a50afe2c71b1e6a0e 100644 --- a/method_inputs/a1/STEP_UP_X10_20K/r00000006/n32/meta.json +++ b/method_inputs/a1/STEP_UP_X10_20K/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 173244, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "53e9e3b5d1bb91a952a216371e7513634abd85eae8483a86119d392b773853b5", "canonical_id": "20c72ee8c363d03d536260bf312f2fb99264b5f7eb8452e4d117a0242138ea3f:00000006", @@ -50,7 +50,7 @@ "view.bcf": "b698558205211fbbdddebc57faaa009987b5242c5c2868dd9590b82ef327f88b", "view.bcf.csi": "8d03c4f14a92bce41b7cea945c82e1d348c42448aedd54084107097ece0782cd" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_20K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_20K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "ad19f7c1a7cc7f21d66bf2b45a0a16b46316c4320dc5418188d121fe14062119", "ladder_columns": [ 60, diff --git a/method_inputs/a1/STEP_UP_X10_20K/r00000007/n32/meta.json b/method_inputs/a1/STEP_UP_X10_20K/r00000007/n32/meta.json index be8a70960a16f04341449c0c25ec1b1bf52543c8..487bdb3ffa2e54e81c3ffc023ebc60423ad854c3 100644 --- a/method_inputs/a1/STEP_UP_X10_20K/r00000007/n32/meta.json +++ b/method_inputs/a1/STEP_UP_X10_20K/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 172396, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "53e9e3b5d1bb91a952a216371e7513634abd85eae8483a86119d392b773853b5", "canonical_id": "20c72ee8c363d03d536260bf312f2fb99264b5f7eb8452e4d117a0242138ea3f:00000007", @@ -50,7 +50,7 @@ "view.bcf": "08299fb0a0ff80feb0339b49b2ae814c2595a8ccd3c5b89ef63db056dcb531d8", "view.bcf.csi": "0a9507a38b9a31e0cbaf6766ab807ea87fe130dac421fbfb8a224edc444e1174" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_20K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_20K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "ad19f7c1a7cc7f21d66bf2b45a0a16b46316c4320dc5418188d121fe14062119", "ladder_columns": [ 31, diff --git a/method_inputs/a1/STEP_UP_X10_20K/receipts/export_51933455.json b/method_inputs/a1/STEP_UP_X10_20K/receipts/export_51933455.json index 1fdf73157a58c70d98e21476c7ce0a07d0c3314b..3068d2f0a0e8d5640fad7272eba9d140d9b6f635 100644 --- a/method_inputs/a1/STEP_UP_X10_20K/receipts/export_51933455.json +++ b/method_inputs/a1/STEP_UP_X10_20K/receipts/export_51933455.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_STEP_UP_X10_20K", "host": "cn604-18", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_20K/receipts/identity_scan_51933455.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_20K/receipts/identity_scan_51933455.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "514d62e777326a1a92d664745213c0de082d526726e5c3a5e2d80ff509329149" + "sha256": "1ae028731365c6731341d4d33cbe765c3d7cebfa6a934380abbde40d0e7b9a08" }, "job": "51933455", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_20K/receipts/open_audit_51933455.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_20K/receipts/open_audit_51933455.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "53e9e3b5d1bb91a952a216371e7513634abd85eae8483a86119d392b773853b5", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_20K/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_20K/r00000000/n32", "files": { "multihetsep.txt": "6771b2f73ff4676ef4c6cb54092fa58119808be5979b6198248296b460c72585", "phlash_contig.npz": "17bb858bd2ba5c91457c902ae314571cee632dd51d1bf8ffed84fa828607c149", @@ -54,7 +54,7 @@ "view.bcf": "043c7d4b592d3c877087332cb2186348b345dda0ab45b9fc7892a6b2143a689c", "view.bcf.csi": "fcabfad52eb476bdd8091193f23239d659a4246bbb89f20865e34f62d5e8bc3d" }, - "meta_sha256": "b1faf1df7e9aacd71d29ef71c2a793180015ef29e55a1447eba77b35324b0959", + "meta_sha256": "f30678be657fdc78bea3af694e17b2a3411d0f6e47f73e8399c8f07edbbaf45d", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "53e9e3b5d1bb91a952a216371e7513634abd85eae8483a86119d392b773853b5", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_20K/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_20K/r00000001/n32", "files": { "multihetsep.txt": "e00deb231ce2a4b14cf043b78a580628e6a2faf9cbb44e9c760baccd0b28977b", "phlash_contig.npz": "0f6986ac17590ebe0c25a58fef293b868c587f1891bc6813d49c25a9a97c1423", @@ -93,7 +93,7 @@ "view.bcf": "84e71345aa3d085a74921c6cbd002f2e745a33fa7f1ba4091003c5a55e8e2e66", "view.bcf.csi": "b67c5a9c169e818b605bdb9b485f23e2ae1acc402c283da46e83deadec1a9608" }, - "meta_sha256": "fe08cc1a3f0b71caebeeeaae123cc69761835ff2413c0ce38ea967622b3b58e0", + "meta_sha256": "b216ab16ca4c021074807d378be8e28ba82856b9e00232e1273625db8adeeff5", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "53e9e3b5d1bb91a952a216371e7513634abd85eae8483a86119d392b773853b5", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_20K/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_20K/r00000002/n32", "files": { "multihetsep.txt": "69f5ff975e0c1fdb25e42e1ebadbe96a64011ef7b3f618fe56172b843a6359ee", "phlash_contig.npz": "3c5eb7355bef91d6d5737fe75c474bad648117fc9d3e62dc8d7f8eb5ea4f0fa5", @@ -132,7 +132,7 @@ "view.bcf": "1565e122dfd1b145bf02a27698958e49060b706448238d947bacd5de5ab69856", "view.bcf.csi": "48cabcd5b5ef4655d68f7318f0d43e052fe75f9e1ba9678ca2c83a9e85bb61b6" }, - "meta_sha256": "e641e0a0a03b26767580a2211d70b4b262abaffcce827c55068c739a73f3273a", + "meta_sha256": "e86526bbffd067a4a6339d550d5d767d6f8ff740a6e454a0a2ac3e007c13d852", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "53e9e3b5d1bb91a952a216371e7513634abd85eae8483a86119d392b773853b5", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_20K/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_20K/r00000003/n32", "files": { "multihetsep.txt": "32f374271435fca1036d278c2c2097094f7e1caf98795a21b6d3ef89c64f6c8b", "phlash_contig.npz": "54e9fc6a9f7cba89cebb29f41eef730037ca04389a41a3f57a872a566e7070f2", @@ -171,7 +171,7 @@ "view.bcf": "0c728d90cad9a30da05a3dc5f6a50b63cf4d81f705c68fab580232ab015ad793", "view.bcf.csi": "49ef234badbcb0a5bae6354c47942d1903b52c9ac5785bf68efb5fb9b89d5060" }, - "meta_sha256": "fea634e3b4c5782ba144b6fe26a5d099712623f5070630daac0c6ee7d81d2ee7", + "meta_sha256": "5b93ef94e932bfe1efeb08709e8c2e5638e68020c413cb18823d40c6725f7e4f", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "53e9e3b5d1bb91a952a216371e7513634abd85eae8483a86119d392b773853b5", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_20K/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_20K/r00000004/n32", "files": { "multihetsep.txt": "b722addd1a98100a42d591646c9909e23c976d7ce79436921b5575fe800cfab3", "phlash_contig.npz": "523b2c10d5752a345716d2ad46a8cb731c963f7bf5797390beecb93a9a2b5476", @@ -210,7 +210,7 @@ "view.bcf": "7870aede08fae7f93c93d02fe82c9ed2d0e8dc154454162bc69f1165219baecf", "view.bcf.csi": "9e34e4e7841f7c3fcb25e66a1cfde30dd0474519c70439a47ed46822a6c9b9d9" }, - "meta_sha256": "b7997689a30946965291c8802cd7b2a485d232d3b4bae818ec9f1272951f7c2a", + "meta_sha256": "ede3e228f97bf619b82cab4441bf162f6053ab382c7e9f855a6e430e4597a989", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "53e9e3b5d1bb91a952a216371e7513634abd85eae8483a86119d392b773853b5", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_20K/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_20K/r00000005/n32", "files": { "multihetsep.txt": "e6b32b7808db797eb2b0e26538b698e53e9608533d521c92396846e193e8e670", "phlash_contig.npz": "b8f6072fff165bc726c107891a5f3bed410f53aa1c6974f74517ea07a3cbb776", @@ -249,7 +249,7 @@ "view.bcf": "aec9de102d24f7719256aa6c8c6f497691cfce6f332e9d7e7aa3ed53fb0b6909", "view.bcf.csi": "b54d401d5c961c6da89972336a389bfa8d86edd9f351348840bb94af0488c71f" }, - "meta_sha256": "1406a4b82a7a723559d12fb2a781017b19afd77106728065021d8912789d5b6d", + "meta_sha256": "dffee6216b2f5c281da8661b7fac4a18f874e5584aacddf7480b3adb52fde3d7", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "53e9e3b5d1bb91a952a216371e7513634abd85eae8483a86119d392b773853b5", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_20K/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_20K/r00000006/n32", "files": { "multihetsep.txt": "01a93266f3b172954ea1716631c4a331a6887b4889a73734c774424a271f8b81", "phlash_contig.npz": "c77e362f92faa023e5feda80b6f9d3adb1fbe932e9d7f518ca15218eab1bacbe", @@ -288,7 +288,7 @@ "view.bcf": "b698558205211fbbdddebc57faaa009987b5242c5c2868dd9590b82ef327f88b", "view.bcf.csi": "8d03c4f14a92bce41b7cea945c82e1d348c42448aedd54084107097ece0782cd" }, - "meta_sha256": "0369beb7a29e3f6ed135417be851592cb9e4e6f059ca00de9efe441e313a097c", + "meta_sha256": "384934ad283ed258f091834937adb7dab694ecbe86da02197f75bc552455b0af", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "53e9e3b5d1bb91a952a216371e7513634abd85eae8483a86119d392b773853b5", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_20K/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_STEP_UP_X10_20K/r00000007/n32", "files": { "multihetsep.txt": "300ba7f15b5cc1ed2da0682d4c8a50e0c0e49899b5b152076f02e9c10d9a2d2e", "phlash_contig.npz": "f72d60705ac0e641c64489a9ba6ed92e707c63570ef81ed254b84c2d65057e03", @@ -327,7 +327,7 @@ "view.bcf": "08299fb0a0ff80feb0339b49b2ae814c2595a8ccd3c5b89ef63db056dcb531d8", "view.bcf.csi": "0a9507a38b9a31e0cbaf6766ab807ea87fe130dac421fbfb8a224edc444e1174" }, - "meta_sha256": "203c75ea4837acb699a132c287da377808abfb41455838f7fa08dfa434390a2c", + "meta_sha256": "70254ed3b23cb2704cc1d835d7cea97ed46556b4325c87350d5aa6d74e3d3df9", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/STEP_UP_X10_20K/receipts/identity_scan_51933455.json b/method_inputs/a1/STEP_UP_X10_20K/receipts/identity_scan_51933455.json index 0bbc3a8b4ca829d8eac2f7c568aa776925afae3c..a48bcf7cd2a6e998c8b27dc112bf05e71c0fdbca 100644 --- a/method_inputs/a1/STEP_UP_X10_20K/receipts/identity_scan_51933455.json +++ b/method_inputs/a1/STEP_UP_X10_20K/receipts/identity_scan_51933455.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "20c72ee8c363d03d536260bf312f2fb99264b5f7eb8452e4d117a0242138ea3f" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T11:04:18Z" diff --git a/method_inputs/a1/STEP_UP_X10_20K/receipts/open_audit_51933455.json b/method_inputs/a1/STEP_UP_X10_20K/receipts/open_audit_51933455.json index 51d2d5dec3bc634dbbcbe97a368e69d3c9a8903c..3ee48ea12f62350b230d0c6aca8b18f57a762e1d 100644 --- a/method_inputs/a1/STEP_UP_X10_20K/receipts/open_audit_51933455.json +++ b/method_inputs/a1/STEP_UP_X10_20K/receipts/open_audit_51933455.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - 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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_20K/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_20K/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_20K/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_20K/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_20K/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_STEP_UP_X10_20K/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_20K/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_STEP_UP_X10_20K/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - 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"fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_Z0/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_Z0/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "68e98ab2109d9a5e8f82664af2a3d600a44ff122b35eeb179e956aa71cf1e993", "ladder_columns": [ 8, diff --git a/method_inputs/a1/Z0/r00000006/n32/meta.json b/method_inputs/a1/Z0/r00000006/n32/meta.json index 45879421d71599fcc19cda720447d956874d0641..2d166bd4d24560c24d1b7234fbc039f25f11f0ec 100644 --- a/method_inputs/a1/Z0/r00000006/n32/meta.json +++ b/method_inputs/a1/Z0/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 118846, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_Z0/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_Z0/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "c2b7aa1cb3fa21bbd3ab062ab082ab4c0e9b10fe843c6502e7bf0ea01bf47cc6", "canonical_id": "6d3f25cb81df1736557340ef4062fb9584d3d0dfdaf1e9c7c24093be57afdaaa:00000006", @@ -50,7 +50,7 @@ "view.bcf": "a9e1acb4b168768af520fb3767320c35ce06d535a96724fb113df9d181d43930", "view.bcf.csi": "b8b6d4d9b107d8a9ad4b9bfa802f5878558008ceee56a335d6c89568d1337288" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_Z0/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_Z0/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "68e98ab2109d9a5e8f82664af2a3d600a44ff122b35eeb179e956aa71cf1e993", "ladder_columns": [ 60, diff --git a/method_inputs/a1/Z0/r00000007/n32/meta.json b/method_inputs/a1/Z0/r00000007/n32/meta.json index 8b1d57df0ed21bb6b88bd1d2caca9bc7afeb503e..f9b53804d1c14328851f6f911bb6b1c5ea57a11e 100644 --- a/method_inputs/a1/Z0/r00000007/n32/meta.json +++ b/method_inputs/a1/Z0/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 118111, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_Z0/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_Z0/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "c2b7aa1cb3fa21bbd3ab062ab082ab4c0e9b10fe843c6502e7bf0ea01bf47cc6", "canonical_id": "6d3f25cb81df1736557340ef4062fb9584d3d0dfdaf1e9c7c24093be57afdaaa:00000007", @@ -50,7 +50,7 @@ "view.bcf": "d261a973763cfc0bde414a03b045e23b10387a36524d2c9b85c96e225274f8f6", "view.bcf.csi": "092139a2aee6cec6bc68655360b4075f75b48fda1fd6867c9c54b7a61a916d21" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_Z0/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_Z0/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "68e98ab2109d9a5e8f82664af2a3d600a44ff122b35eeb179e956aa71cf1e993", "ladder_columns": [ 31, diff --git a/method_inputs/a1/Z0/receipts/export_51933480.json b/method_inputs/a1/Z0/receipts/export_51933480.json index 28cd6f6e215b62cf0158553193c7853c8442b0cf..b155a653a0c00a92b16d8f3724c6c3e671319dd6 100644 --- a/method_inputs/a1/Z0/receipts/export_51933480.json +++ b/method_inputs/a1/Z0/receipts/export_51933480.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_Z0", "host": "cn604-18", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_Z0/receipts/identity_scan_51933480.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_Z0/receipts/identity_scan_51933480.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "dd619c03d72174ef27eb3f48cbe72183c92ebb5a5bf660e7d1c33a7627b0f879" + "sha256": "39d20b06e9d0d41d5bb400ec6079ff2d2b1ee6cdcf1735b928fc122429a3c2a7" }, "job": "51933480", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_Z0/receipts/open_audit_51933480.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_Z0/receipts/open_audit_51933480.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c2b7aa1cb3fa21bbd3ab062ab082ab4c0e9b10fe843c6502e7bf0ea01bf47cc6", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_Z0/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_Z0/r00000000/n32", "files": { "multihetsep.txt": "19719dc2de3e1ebe623d3014126cc0ae64875d9c53870d586b9a752c815338b9", "phlash_contig.npz": "f8d4e85d5e3512fb46c283c912b011b6f782cce1fdd57772b136de7d6cfc3b21", @@ -54,7 +54,7 @@ "view.bcf": "4b62bc19172f4a318c05d79f5f940e09d863373088540e5fe4bdcd06a5848a7d", "view.bcf.csi": "b6f7658e97a6f2b1225ee6772023bbf51b1bdd6b9742b9b0ec3e22d57a6e204e" }, - "meta_sha256": "895e93f717bbdd439d4e03d7ef6b0ba96315acf5d7d5d3533c2f05a87ec2622a", + "meta_sha256": "faf0d5d81f5e6f8ce8e3621479f97204a2f1a92de08bd6bf7139cad600652dad", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c2b7aa1cb3fa21bbd3ab062ab082ab4c0e9b10fe843c6502e7bf0ea01bf47cc6", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_Z0/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_Z0/r00000001/n32", "files": { "multihetsep.txt": "db4881fa08de103693de570ff8c5012fda4fd0c31ac63d2452da237b7c96b40a", "phlash_contig.npz": "bc84acb95168356f9fe61d2b8fb0adf6699fb27e5d1df7ad3bfc991dbf470904", @@ -93,7 +93,7 @@ "view.bcf": "8ac2dcd050c14b577605bdd057e5a8d769a02e0ff20a5d0436ef0c9b56b5fa0c", "view.bcf.csi": "fe5adc0d5766babaed455fa44f31e9b2deb4c9a0809e6431437c9b83c65b5fff" }, - "meta_sha256": "44a3009734a02e022554432259d03a54b914e1838b57c543c6af1ea24f16d0c4", + "meta_sha256": "9d52090408744d68090ebbb3ff23f53903dba1791e042b2968087d4690857cd2", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c2b7aa1cb3fa21bbd3ab062ab082ab4c0e9b10fe843c6502e7bf0ea01bf47cc6", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_Z0/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_Z0/r00000002/n32", "files": { "multihetsep.txt": "ad33991e17bc0a377507be02498d89343819b948d2943ecd4387e4b8cc19d319", "phlash_contig.npz": "e0f092df726215a4a1c2cdcaa54a023c5bf9349aeaec9837bc974cc2c9499170", @@ -132,7 +132,7 @@ "view.bcf": "1653e39dc4df11aa789455794638def2d14d501937484fa643576ec6660ccdb3", "view.bcf.csi": "89135dd7bd0c282a7fd0df39b9bc7ef5d065c1c005165c8afadc37c0d35a98a1" }, - "meta_sha256": "8b9d0f4becde0d3087ee77082bee26e455d0c382a7a89415ec5f2b83540f5537", + "meta_sha256": "f34a585aa4fb69ed8395727d98fbaff5f60444d9275ec3300fd4776fb805d9d7", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c2b7aa1cb3fa21bbd3ab062ab082ab4c0e9b10fe843c6502e7bf0ea01bf47cc6", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_Z0/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_Z0/r00000003/n32", "files": { "multihetsep.txt": "a36bc75a71f360457580fa16e8506149ac99839657311d702e0ee9381d06ab49", "phlash_contig.npz": "574867d40f682b9ed2882c3ccb41a0086f2e64fd2be4d124aa128258112fb4d6", @@ -171,7 +171,7 @@ "view.bcf": "9cb5b8fdb899bae65446978ca9dfc281bc4459d485de8977c2c8ee9f023b14d9", "view.bcf.csi": "0cbddc99312534c83a0f68ab3751856130f3c40598ad5114bd36362f233b397e" }, - "meta_sha256": "92842cc85b578889c6368fc9c1471cd90b25e93cbb6bfc4a0a9365231bf5401a", + "meta_sha256": "ac48c3ed25c735df2f5da5f64306ab3af13f19f36ef27b43bdbf7747f5e63b3d", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c2b7aa1cb3fa21bbd3ab062ab082ab4c0e9b10fe843c6502e7bf0ea01bf47cc6", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_Z0/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_Z0/r00000004/n32", "files": { "multihetsep.txt": "45dcef16ce4e53eede8074e75aecfcc4255aa9fd2423cbfafd6b3435e31810d0", "phlash_contig.npz": "23913f72e2e3a5f1f25ef2fec104844b93b8af3e794418211fadcd2d84040386", @@ -210,7 +210,7 @@ "view.bcf": "12e8fe0845eb0e6591f9bd0df78a71b8150ce52db421746e1471752edee4fbfd", "view.bcf.csi": "77a1cb512a7c2949749306126509858dae9702596ad6da5c6840da96a990e459" }, - "meta_sha256": "e86e45d9e7883466c2c9e3b35764626d16a5478a2b51f0edcc571bb701293242", + "meta_sha256": "82578fdc52e8aeb8cf79b24fc0d4fb44bf32d3228089e64fe3ee3309b33c110c", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c2b7aa1cb3fa21bbd3ab062ab082ab4c0e9b10fe843c6502e7bf0ea01bf47cc6", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_Z0/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_Z0/r00000005/n32", "files": { "multihetsep.txt": "22e2ae9d57db7b27a7502b1b719f7fce1c22be014a0491ad4918d2465599851b", "phlash_contig.npz": "644760af1126843fa13c62dfc88cc402da921f4a008391c65548c4078deb28c2", @@ -249,7 +249,7 @@ "view.bcf": "e6659ee0ed04a76a4581da9fc7431793275cf47613a3edd41040b189d431701f", "view.bcf.csi": "ad5d3e84c68b0b0c08aab0b28997537a5468f057efe16c80856a2a1a3eb70f64" }, - "meta_sha256": "0d10eb7db871564e4c55122657c44d2b834539e16778247ca0e489eeac7e6886", + "meta_sha256": "713c3d0941b1fdf9e73f5e58632fd0916387104e69c5d44676ea436ea194e9b2", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c2b7aa1cb3fa21bbd3ab062ab082ab4c0e9b10fe843c6502e7bf0ea01bf47cc6", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_Z0/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_Z0/r00000006/n32", "files": { "multihetsep.txt": "53b22049d2dc029559564883059aa8d019422794136282481b3c550b1b0502f3", "phlash_contig.npz": "21c2ad922a52477ce92064e4779154c27f19703c144a47bc46a7c9fba0499024", @@ -288,7 +288,7 @@ "view.bcf": "a9e1acb4b168768af520fb3767320c35ce06d535a96724fb113df9d181d43930", "view.bcf.csi": "b8b6d4d9b107d8a9ad4b9bfa802f5878558008ceee56a335d6c89568d1337288" }, - "meta_sha256": "81127356c52c3765438e231dcdabac5a8be9da25cb6b267894acc786104c7203", + "meta_sha256": "90a8ca0fc3ceda1a3d28e394a121c2f929c5b63dd2c8356dccfd4ac5ac50174f", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c2b7aa1cb3fa21bbd3ab062ab082ab4c0e9b10fe843c6502e7bf0ea01bf47cc6", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_Z0/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_Z0/r00000007/n32", "files": { "multihetsep.txt": "aed9cb7e904bdb837914e3e3f84a3777e26c57b3b35d3df079f8bdeffad81e1e", "phlash_contig.npz": "ec97141ca4cda8e68b7a9e708cb22e1aa34385c9ef14ee5a5e496da0130f57f1", @@ -327,7 +327,7 @@ "view.bcf": "d261a973763cfc0bde414a03b045e23b10387a36524d2c9b85c96e225274f8f6", "view.bcf.csi": "092139a2aee6cec6bc68655360b4075f75b48fda1fd6867c9c54b7a61a916d21" }, - "meta_sha256": "8354964f56fac61061b13db101e971157d916a3707403c45bd076886fd641be5", + "meta_sha256": "6ce1bd5e53af5ab7547f0e0e24f02a49929532495cf9ffd32c7ebd0ec279bf22", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/Z0/receipts/identity_scan_51933480.json b/method_inputs/a1/Z0/receipts/identity_scan_51933480.json index 1b5307b6d5ad9e6b7c3afc5fab7cca9d178b7f56..17d2f86fc3cef01a0c684602d3f455a937b45569 100644 --- a/method_inputs/a1/Z0/receipts/identity_scan_51933480.json +++ b/method_inputs/a1/Z0/receipts/identity_scan_51933480.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "6d3f25cb81df1736557340ef4062fb9584d3d0dfdaf1e9c7c24093be57afdaaa" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T11:05:16Z" diff --git a/method_inputs/a1/Z0/receipts/open_audit_51933480.json b/method_inputs/a1/Z0/receipts/open_audit_51933480.json index 577cdf1de862d47110a8adccee5f1fbc2bb7264b..61a3725ee7b3e3ed4209a15a5b7014bbe81ed8f0 100644 --- a/method_inputs/a1/Z0/receipts/open_audit_51933480.json +++ b/method_inputs/a1/Z0/receipts/open_audit_51933480.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_Z0/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_Z0/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_Z0/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_Z0/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_Z0/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_Z0/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_Z0/receipts/identity_scan_51933480.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_Z0/receipts/identity_scan_51933480.json" }, { "mode": "r", - 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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_Z0/receipts/export_51933480.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_Z0/receipts/export_51933480.json" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/events.log" + "path": "$WORK/bench_h2h_20260915/events.log" } ], "purposes": [ diff --git a/method_inputs/a1/ZC0.5/r00000000/n32/meta.json b/method_inputs/a1/ZC0.5/r00000000/n32/meta.json index f030a1609ec77bedb9631a55389de18b1512380d..26ced858eea9c6dacb2e4af726f532459a4a8ace 100644 --- a/method_inputs/a1/ZC0.5/r00000000/n32/meta.json +++ b/method_inputs/a1/ZC0.5/r00000000/n32/meta.json @@ -2,7 +2,7 @@ "S": 138870, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_ZC0.5/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_ZC0.5/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "31d5aa59625b94a6ceab6d3223f103b9a294fa5874690056c6447fed777c9a14", "canonical_id": "a7d6f6103c617a0e9816fc10211cca433b4d276c70bef9c2244d74d67472cac7:00000000", @@ -50,7 +50,7 @@ "view.bcf": "10c590d8a82551dfced95cb9e3e8106cec6218e928cba290cb9a1d70281caffe", "view.bcf.csi": "0c1c9647020e324c141e39ac9e68f53cb761a7f82729779dfacdf0f52f686c2d" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "0fcf70053c3fe3b303dbbaf464d0df9b192d60369c2529ff352ed56192d6a379", "ladder_columns": [ 39, diff --git a/method_inputs/a1/ZC0.5/r00000001/n32/meta.json b/method_inputs/a1/ZC0.5/r00000001/n32/meta.json index 39c5a506c5fa81d4163dbd0154b9a91234f3695a..cbeea5a6e5a9aea93d43a4a546480c105b74372a 100644 --- a/method_inputs/a1/ZC0.5/r00000001/n32/meta.json +++ b/method_inputs/a1/ZC0.5/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 138939, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_ZC0.5/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_ZC0.5/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "31d5aa59625b94a6ceab6d3223f103b9a294fa5874690056c6447fed777c9a14", "canonical_id": "a7d6f6103c617a0e9816fc10211cca433b4d276c70bef9c2244d74d67472cac7:00000001", @@ -50,7 +50,7 @@ "view.bcf": "a04f8aa8d3bd5e48b72c1a2325f664b4897fa62ceeddf7e33f8eb4b115af4aa8", "view.bcf.csi": "82a1cc499b012b5a89213238d1a4c1f0219efbe310c75dc7c6f774ad655893d9" }, - 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"fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "0fcf70053c3fe3b303dbbaf464d0df9b192d60369c2529ff352ed56192d6a379", "ladder_columns": [ 23, diff --git a/method_inputs/a1/ZC0.5/r00000003/n32/meta.json b/method_inputs/a1/ZC0.5/r00000003/n32/meta.json index 632306f39aa9144b148d33f0eef74c4d10b20475..4bd85227f3fb72eee49f246677492cadfe9cd133 100644 --- a/method_inputs/a1/ZC0.5/r00000003/n32/meta.json +++ b/method_inputs/a1/ZC0.5/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 138444, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_ZC0.5/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_ZC0.5/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "31d5aa59625b94a6ceab6d3223f103b9a294fa5874690056c6447fed777c9a14", "canonical_id": "a7d6f6103c617a0e9816fc10211cca433b4d276c70bef9c2244d74d67472cac7:00000003", @@ -50,7 +50,7 @@ "view.bcf": "0dc88de370aba8bcf30547bcff47b1d7d3cf601793a07fb9bcee5626c3b6514c", "view.bcf.csi": "de9dce4bc996221ae0505cbe37cc3b04e01e07614f6464dafa389e0d4968cc67" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "0fcf70053c3fe3b303dbbaf464d0df9b192d60369c2529ff352ed56192d6a379", "ladder_columns": [ 35, diff --git a/method_inputs/a1/ZC0.5/r00000004/n32/meta.json b/method_inputs/a1/ZC0.5/r00000004/n32/meta.json index a7c7bdf0ee80144b3289a91856e39dc9da24f1a1..5e6fb64459268fb49a7de6f87f04a388f4167586 100644 --- a/method_inputs/a1/ZC0.5/r00000004/n32/meta.json +++ b/method_inputs/a1/ZC0.5/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 137563, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_ZC0.5/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_ZC0.5/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "31d5aa59625b94a6ceab6d3223f103b9a294fa5874690056c6447fed777c9a14", "canonical_id": "a7d6f6103c617a0e9816fc10211cca433b4d276c70bef9c2244d74d67472cac7:00000004", @@ -50,7 +50,7 @@ "view.bcf": "93f3834005174930f46f8453ca526e926cbba00275ad81932e7eeec9157e7ffc", "view.bcf.csi": "75a1fd57f039f221a1d22d1ba378175dc18df7994c2df0c1a981ab6bd5e3b993" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "31abe55d11840cbdf84912545a8704da323cf1dd96ecdf0051ac40123798ee01", "ladder_columns": [ 22, diff --git a/method_inputs/a1/ZC0.5/r00000005/n32/meta.json b/method_inputs/a1/ZC0.5/r00000005/n32/meta.json index ae9f3f226b67c4a929a876bca572ebf81a28aae9..4ee6a12d27302c1d36c3daeafa5068e12e066464 100644 --- a/method_inputs/a1/ZC0.5/r00000005/n32/meta.json +++ b/method_inputs/a1/ZC0.5/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 139647, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_ZC0.5/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_ZC0.5/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "31d5aa59625b94a6ceab6d3223f103b9a294fa5874690056c6447fed777c9a14", "canonical_id": "a7d6f6103c617a0e9816fc10211cca433b4d276c70bef9c2244d74d67472cac7:00000005", @@ -50,7 +50,7 @@ "view.bcf": "1ee7537ff2d3aa7ac225fedc920c47c5a2044a5d4b6119fde67415f023d89299", "view.bcf.csi": "d15beba715d4c0f6335d4c6edfb92be84d02c094c7fecf9f7ceee32cdd4d62aa" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "31abe55d11840cbdf84912545a8704da323cf1dd96ecdf0051ac40123798ee01", "ladder_columns": [ 8, diff --git a/method_inputs/a1/ZC0.5/r00000006/n32/meta.json b/method_inputs/a1/ZC0.5/r00000006/n32/meta.json index 1f5162f03af6b040619b548a5cdea5d576e04bd8..9cec80d9e73751e0a2f6a798e121ee4921878d0a 100644 --- a/method_inputs/a1/ZC0.5/r00000006/n32/meta.json +++ b/method_inputs/a1/ZC0.5/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 139025, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_ZC0.5/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_ZC0.5/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "31d5aa59625b94a6ceab6d3223f103b9a294fa5874690056c6447fed777c9a14", "canonical_id": "a7d6f6103c617a0e9816fc10211cca433b4d276c70bef9c2244d74d67472cac7:00000006", @@ -50,7 +50,7 @@ "view.bcf": "f115f4ca9d0dbf393cd4280441039bb566ea635bfaa644e4a82a83ed042e5098", "view.bcf.csi": "09945551ba22bfb7b676f98dec963946343c90638eef98c7c4f9660ddd08d3ee" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "31abe55d11840cbdf84912545a8704da323cf1dd96ecdf0051ac40123798ee01", "ladder_columns": [ 60, diff --git a/method_inputs/a1/ZC0.5/r00000007/n32/meta.json b/method_inputs/a1/ZC0.5/r00000007/n32/meta.json index ae694ff6640a15505aad0d350ba4034fbe342a04..8f539b778d6d51171b13652bd97e27720ec839b8 100644 --- a/method_inputs/a1/ZC0.5/r00000007/n32/meta.json +++ b/method_inputs/a1/ZC0.5/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 138633, "arm": "CLEAN", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_ZC0.5/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a1_ZC0.5/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "31d5aa59625b94a6ceab6d3223f103b9a294fa5874690056c6447fed777c9a14", "canonical_id": "a7d6f6103c617a0e9816fc10211cca433b4d276c70bef9c2244d74d67472cac7:00000007", @@ -50,7 +50,7 @@ "view.bcf": "21ce0055346d84301514478e7395d4b74a79bbedbff0ef7bee8e85aa254adc00", "view.bcf.csi": "13a78b7a2b5904567832d8e9943448c8be669ce368f74ac62cdd9481f90ff705" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "31abe55d11840cbdf84912545a8704da323cf1dd96ecdf0051ac40123798ee01", "ladder_columns": [ 31, diff --git a/method_inputs/a1/ZC0.5/receipts/export_51933482.json b/method_inputs/a1/ZC0.5/receipts/export_51933482.json index 4022e7e3fec1c9368441ded16bf65bd236952c46..b0997242e44c6f6fcb90c3796d8ab38f012eb53a 100644 --- a/method_inputs/a1/ZC0.5/receipts/export_51933482.json +++ b/method_inputs/a1/ZC0.5/receipts/export_51933482.json @@ -1,25 +1,25 @@ { "arm": "CLEAN", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a1_ZC0.5", "host": "cn113-35-l", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_ZC0.5/receipts/identity_scan_51933482.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a1_ZC0.5/receipts/identity_scan_51933482.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "df8f8f873fa14439343156459465d95d10b279ba103d18a9db1f6282b2e8f487" + "sha256": "b94e4bdeba8253ccd19ec5bac3975298593537b47d794bb0efe3e24786cc0410" }, "job": "51933482", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_ZC0.5/receipts/open_audit_51933482.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a1_ZC0.5/receipts/open_audit_51933482.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "31d5aa59625b94a6ceab6d3223f103b9a294fa5874690056c6447fed777c9a14", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_ZC0.5/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_ZC0.5/r00000000/n32", "files": { "multihetsep.txt": "a6b279925819ba15cd1a68ac11b6cb062ec28935a9b1d57a8128716e0ef04cda", "phlash_contig.npz": "2e03a96fc5723d3bf8e3492f7e4955ab350e8e0128c77b047e81f42cf6e5da03", @@ -54,7 +54,7 @@ "view.bcf": "10c590d8a82551dfced95cb9e3e8106cec6218e928cba290cb9a1d70281caffe", "view.bcf.csi": "0c1c9647020e324c141e39ac9e68f53cb761a7f82729779dfacdf0f52f686c2d" }, - "meta_sha256": "1765f02087dfa658dcfe7ac330cec6f5ec9db4cf693fe8015dc7dd759ec7ecd4", + "meta_sha256": "83f50c9499565c472e8123540d4ff999521dd09f89865693171f8c475fdf2565", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "31d5aa59625b94a6ceab6d3223f103b9a294fa5874690056c6447fed777c9a14", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_ZC0.5/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_ZC0.5/r00000001/n32", "files": { "multihetsep.txt": "0de6a44b346c38afffbc1a263819f052d2fecbafad317d3339e2b4a7721dc848", "phlash_contig.npz": "96c2f07c91e63a595795022eb2c48a0a81a6b700de620989a0e55a8853978fb1", @@ -93,7 +93,7 @@ "view.bcf": "a04f8aa8d3bd5e48b72c1a2325f664b4897fa62ceeddf7e33f8eb4b115af4aa8", "view.bcf.csi": "82a1cc499b012b5a89213238d1a4c1f0219efbe310c75dc7c6f774ad655893d9" }, - "meta_sha256": "2db0ebb8098f29e22ebb9ea1fee2df95d75b107ff460384e8b0d5187028d2d4d", + "meta_sha256": "13bc2c0b9ab345f3cc2089b41de5ea30aa760af038d70c5fd001f267116277c4", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "31d5aa59625b94a6ceab6d3223f103b9a294fa5874690056c6447fed777c9a14", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_ZC0.5/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_ZC0.5/r00000002/n32", "files": { "multihetsep.txt": "53b1907e41cd85a9ebaa160cfe3de2b6c3bd507746fbc079014539552c69a6fb", "phlash_contig.npz": "08d29e281b3f63b95b16149de1810d183dda0b8ca04fbcb617a93ba248d5986b", @@ -132,7 +132,7 @@ "view.bcf": "12cd8c43ff28902c4b1948a5dd90cbbfc544d485773f2a601250b02befb0899a", "view.bcf.csi": "b78304ce8d7842587bcfc6b6806d6080d0504ea985eca68a267ed105bc2e0363" }, - "meta_sha256": "7fa8dc7499b67a8c16bce471c03460c1a0cf5ef8d8b0562c886e311047ed2196", + "meta_sha256": "989f01700e7a69227efc0fc2a8d42ac184b8f7009e936986ded9880c7fb049e7", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "31d5aa59625b94a6ceab6d3223f103b9a294fa5874690056c6447fed777c9a14", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_ZC0.5/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_ZC0.5/r00000003/n32", "files": { "multihetsep.txt": "6b8c121ea8da74e2c695de5a3506745dfcbc97b1d60380227cc1d28b320557c3", "phlash_contig.npz": "89982bb20e021d9ffea79b7763ff20d4e60b996ff38489a53c227dae17faadfd", @@ -171,7 +171,7 @@ "view.bcf": "0dc88de370aba8bcf30547bcff47b1d7d3cf601793a07fb9bcee5626c3b6514c", "view.bcf.csi": "de9dce4bc996221ae0505cbe37cc3b04e01e07614f6464dafa389e0d4968cc67" }, - "meta_sha256": "27b99e29c77db3a3d3d1856911ecf4bf676307e9200e04f27dc4cc5d701a65b3", + "meta_sha256": "a2cef6e09ef427772d642d9a050931ed9feeed5bf1fa43dc7acfbf3b65062ff8", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "31d5aa59625b94a6ceab6d3223f103b9a294fa5874690056c6447fed777c9a14", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_ZC0.5/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_ZC0.5/r00000004/n32", "files": { "multihetsep.txt": "3076a87bbac445e95b0c91aec21dd4cba4771ba280dd6b20573c43e9c36a952c", "phlash_contig.npz": "031c488234b0767f62c75b3bf770f3b8d20f31e87a126487b6a3ff6410963faa", @@ -210,7 +210,7 @@ "view.bcf": "93f3834005174930f46f8453ca526e926cbba00275ad81932e7eeec9157e7ffc", "view.bcf.csi": "75a1fd57f039f221a1d22d1ba378175dc18df7994c2df0c1a981ab6bd5e3b993" }, - "meta_sha256": "c39afb17bb7f150723dc99681c144ba90955f38a335576070f720975d93b3825", + "meta_sha256": "d7f8ea3d52d3687c2b88b19624dcd179a4fbbabbc18d455bc4f49338819d18ff", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "31d5aa59625b94a6ceab6d3223f103b9a294fa5874690056c6447fed777c9a14", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_ZC0.5/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_ZC0.5/r00000005/n32", "files": { "multihetsep.txt": "a0744025c6144af35433ae49dad02955809f2d491ca6dd026c1d996b89a01ac1", "phlash_contig.npz": "80ebca195893da6ad88867f27c4990f302eeac18689121a0c6e2886cb00699ec", @@ -249,7 +249,7 @@ "view.bcf": "1ee7537ff2d3aa7ac225fedc920c47c5a2044a5d4b6119fde67415f023d89299", "view.bcf.csi": "d15beba715d4c0f6335d4c6edfb92be84d02c094c7fecf9f7ceee32cdd4d62aa" }, - "meta_sha256": "49dc0d4f5eeb29dab73c57d2dc01eef5347a61324d97c8bbcbd2c7a07290a0d0", + "meta_sha256": "959a6ea116ec8e171e369b81b132789ae2e248d528685acb5328f35ad241838a", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "31d5aa59625b94a6ceab6d3223f103b9a294fa5874690056c6447fed777c9a14", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_ZC0.5/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_ZC0.5/r00000006/n32", "files": { "multihetsep.txt": "0b13fb42decff419a0ceb9c618891480f238831ac66683d316d149c7dfc5639c", "phlash_contig.npz": "0370d932a22a039f2c80594add78875c059b14cc07745b596a85c53bf0624dd8", @@ -288,7 +288,7 @@ "view.bcf": "f115f4ca9d0dbf393cd4280441039bb566ea635bfaa644e4a82a83ed042e5098", "view.bcf.csi": "09945551ba22bfb7b676f98dec963946343c90638eef98c7c4f9660ddd08d3ee" }, - "meta_sha256": "d39a5d5e0e296bd37762a53660d692f41f36a015e18ad0b816d695c93190ffa8", + "meta_sha256": "d611261fdf383b274bea13c23b3f9ed7f0096acd4a59dbdb37734d72f5126880", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "31d5aa59625b94a6ceab6d3223f103b9a294fa5874690056c6447fed777c9a14", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_ZC0.5/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a1_ZC0.5/r00000007/n32", "files": { "multihetsep.txt": "749036b58097f0d0845b9c8777557137028622a83db50d5fc93408c861b9d234", "phlash_contig.npz": "01fef85c5b7d2b55c1a9f4becae4b09061d2d68103ce3a0f549ae7294bf6a01c", @@ -327,7 +327,7 @@ "view.bcf": "21ce0055346d84301514478e7395d4b74a79bbedbff0ef7bee8e85aa254adc00", "view.bcf.csi": "13a78b7a2b5904567832d8e9943448c8be669ce368f74ac62cdd9481f90ff705" }, - "meta_sha256": "5d4222d1b5b178a7097e3b6db9d88007f6ca3582a75a5712e1c0ea8520472231", + "meta_sha256": "d8d8db028ec3890b3b7818b18d52ad3b591b0500183a135433977de0b614f139", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (obs == true in CLEAN)", "n": 32, diff --git a/method_inputs/a1/ZC0.5/receipts/identity_scan_51933482.json b/method_inputs/a1/ZC0.5/receipts/identity_scan_51933482.json index 59c69ccb50db0b40a6b748ccb2ab031a416c435c..55be181cc36ba6c31b64a617a6f337be18429154 100644 --- a/method_inputs/a1/ZC0.5/receipts/identity_scan_51933482.json +++ b/method_inputs/a1/ZC0.5/receipts/identity_scan_51933482.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "a7d6f6103c617a0e9816fc10211cca433b4d276c70bef9c2244d74d67472cac7" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T11:05:28Z" diff --git a/method_inputs/a1/ZC0.5/receipts/open_audit_51933482.json b/method_inputs/a1/ZC0.5/receipts/open_audit_51933482.json index 9aa5ba37aa6fe159169e3106099186b04688ecb6..558f2b527fb620a0a5c68525514ebf4ca6013c1b 100644 --- a/method_inputs/a1/ZC0.5/receipts/open_audit_51933482.json +++ b/method_inputs/a1/ZC0.5/receipts/open_audit_51933482.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a1_ZC0.5/receipts/identity_scan_51933482.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a1_ZC0.5/receipts/identity_scan_51933482.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a1_ZC0.5/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_ZC0.5/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_ZC0.5/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a1_ZC0.5/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a1_ZC0.5/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "r", - 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"fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_Africa_1T12/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_Africa_1T12/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "cf2c6cfee25d1f9b8597ef2c186647bdacc0ff88985e3de2b0b5f4fa99073aea", "ladder_columns": [ 60, diff --git a/method_inputs/a2/Africa_1T12/r00000007/n32/meta.json b/method_inputs/a2/Africa_1T12/r00000007/n32/meta.json index 0477b103ef5ed1b95ec6794686027a03feb82a91..cc08ee34e8ef03f3567c040b77d245dbeacd33fe 100644 --- a/method_inputs/a2/Africa_1T12/r00000007/n32/meta.json +++ b/method_inputs/a2/Africa_1T12/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 80629, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_Africa_1T12/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_Africa_1T12/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "9b0b0375b7887cf48805b3432fda42769ec97fcf0bfee18f3f1188a4c5fc2933", "canonical_id": "30c4e49a7d167e610fb159353a709e196069b1bfe37d025a0a2846530d250661:00000007", @@ -50,7 +50,7 @@ "view.bcf": "4ede3d20a2626842b07ae9ccc132dbe8639cd1e957d1e18a90c5130320b17049", "view.bcf.csi": "23adf76d1c2a9a3876e3f211616ab45aff83123dacbe9f4f0a1b061722f6b9b2" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_Africa_1T12/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_Africa_1T12/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "cf2c6cfee25d1f9b8597ef2c186647bdacc0ff88985e3de2b0b5f4fa99073aea", "ladder_columns": [ 31, diff --git a/method_inputs/a2/Africa_1T12/receipts/export_51969778.json b/method_inputs/a2/Africa_1T12/receipts/export_51969778.json index 6502430bd1160c3aef156aa0107d72fa09d0877c..462cb760bb89843784104848e34addc741bb1dfa 100644 --- a/method_inputs/a2/Africa_1T12/receipts/export_51969778.json +++ b/method_inputs/a2/Africa_1T12/receipts/export_51969778.json @@ -1,25 +1,25 @@ { "arm": "CLEAN_NOISE", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a2_Africa_1T12", "host": "cn504-16", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_Africa_1T12/receipts/identity_scan_51969778.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a2_Africa_1T12/receipts/identity_scan_51969778.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "ea6c255a16b103ef36acf3c89c205150a15f0b86536e0a04ecc202c03c91b6d0" + "sha256": "890781b4d0e93640b545916c1329432be7e695149e540362a8ddf41b92dd2e74" }, "job": "51969778", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_Africa_1T12/receipts/open_audit_51969778.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a2_Africa_1T12/receipts/open_audit_51969778.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "9b0b0375b7887cf48805b3432fda42769ec97fcf0bfee18f3f1188a4c5fc2933", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_Africa_1T12/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_Africa_1T12/r00000000/n32", "files": { "multihetsep.txt": "6f5768f91a3df262801ad6ab02e94e658033823add03e91975b583ef39b5f86d", "phlash_contig.npz": "cfe5c5220f2e63f4b681fd072592bb6f87c7057363943aa8870bc55606392fe5", @@ -54,7 +54,7 @@ "view.bcf": "8357ce4e71d73991adb73991108c6561ad4ee800e9dd5d639c12aac0c89ec71b", "view.bcf.csi": "b76fe65c88690abb75a45a78f434e8a66024ff44112fe92aacd57aef1fc47230" }, - "meta_sha256": "0770df16b2cff84fa4421f5b583e2cfd4a06bfafb4df6a2fcea91a0708a7c770", + "meta_sha256": "79d0608c23562c1f5f4b5ec912aa33c779030fe00efc34b9a00482cdc7ff81db", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "9b0b0375b7887cf48805b3432fda42769ec97fcf0bfee18f3f1188a4c5fc2933", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_Africa_1T12/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_Africa_1T12/r00000001/n32", "files": { "multihetsep.txt": "a473e9c7b9f467e3c19cc3445403d4e343e143eec1c44bf66ce10bd01bb1b272", "phlash_contig.npz": "b46a63093804aac56a2248486a6344d283db72e8c80a762627aef5b4a474f271", @@ -93,7 +93,7 @@ "view.bcf": "08b8f5dd97a606508a04cd89b5b77da8975daec5bc904228e07c5784e5f1688f", "view.bcf.csi": "f534abb94432a72da3dda5722fbcb0c17b9b6e800ff8c452216dade0275e3115" }, - "meta_sha256": "0ff982d0fbe0116f112cea7869f77e6e5cfb52edb8207a8238c52257e181ebb7", + "meta_sha256": "f1b2ffe6b19acaa1c266ed4b38a99cb5c01f3756719f6eced244e76b7030a0ae", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "9b0b0375b7887cf48805b3432fda42769ec97fcf0bfee18f3f1188a4c5fc2933", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_Africa_1T12/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_Africa_1T12/r00000002/n32", "files": { "multihetsep.txt": "8edd666b61ddbeb3b8cc4f14a07724fdb9bb395a7580723d3b5f395df43f0643", "phlash_contig.npz": "3a816585304053f8384be83b2038e965d418bd5c09a1d9e6eb4e939e0f6613a4", @@ -132,7 +132,7 @@ "view.bcf": "b236e0ce97c06610636ad1f48406c0b9abab94e048f35635aa1af48252061c0c", "view.bcf.csi": "adc00355966ac8baf6598cd72bc23961f2f6fbfc6bf1685891d0a7648c2ce591" }, - "meta_sha256": "6b7d10a26b3a6b0fdbc031757429ee94b667c8e736b3c14ed3aee82288f74410", + "meta_sha256": "0ffd45e1cdf188513b45a8ea70b7248d1f364cba621fbd171dc2b8a3a3b4a5c0", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "9b0b0375b7887cf48805b3432fda42769ec97fcf0bfee18f3f1188a4c5fc2933", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_Africa_1T12/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_Africa_1T12/r00000003/n32", "files": { "multihetsep.txt": "4262ee80bde8b37edefcca29d379d7dd1ff9f790ff0402b08a0737faa0a08e52", "phlash_contig.npz": "5a742ebac76f32a7d77848641761794ff450a24e48d522c814f9b59e0dfd6800", @@ -171,7 +171,7 @@ "view.bcf": "bd740cdcbd2d35c57a27c3eba33d8ed22a5f53f61fc5b40bb258b1c7ac443062", "view.bcf.csi": "c76dc816fb8800368a03f61516086ab636c979039d68df43f6d8ea60b8befbfa" }, - "meta_sha256": "4d1f5400693960d0e501413225c0c69d0e7ef757d4b072b81c8e0074c8ffa486", + "meta_sha256": "8a5a3ea6191d129140fff8d5ccbbe8c9ecc1b8636771515c414c539dcc39b657", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "9b0b0375b7887cf48805b3432fda42769ec97fcf0bfee18f3f1188a4c5fc2933", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_Africa_1T12/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_Africa_1T12/r00000004/n32", "files": { "multihetsep.txt": "581c15182616f273d6970fbf536a59e50e15152db59c2fd28981fee060d583a7", "phlash_contig.npz": "835d268aa12d84bb36ccf15e29c6560aa4d441cb127ef69e876dcbb5a6ae3816", @@ -210,7 +210,7 @@ "view.bcf": "dfa7f2be7e6c0b5c11e976a02a83e89d3bcb286f4f10ae8f4a503849720b2e8e", "view.bcf.csi": "6db4271f20bfb19bd9eda4e2f4b0a1a4198a202581e2142c0e0949e3b651ef27" }, - "meta_sha256": "20de049d2e2a624b0afd0de4996450bc5ca757e52dbdb859ad89a5ad4abd85ae", + "meta_sha256": "5c3bdf7a27ee7fb9da2eb52ed76494cc45122d9ea3255f9bb46bf4931ef2a9f4", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "9b0b0375b7887cf48805b3432fda42769ec97fcf0bfee18f3f1188a4c5fc2933", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_Africa_1T12/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_Africa_1T12/r00000005/n32", "files": { "multihetsep.txt": "2dcec5234bfa222623a158b192e991630d2ac5ff28c823a173fcc63b789057c7", "phlash_contig.npz": "afb7899b3b75482ff90a3d78560a1b9bebe5d0aa4da25f1f76886a68f09bbb72", @@ -249,7 +249,7 @@ "view.bcf": "9136fece247734f0b9ba1005dbb212e4410cc2ebba7b2cca7408199939575782", "view.bcf.csi": "e3a21ae6a7b986bc18f0086ac1a86ea331293435f21d2e248a82a1c9a131af2c" }, - "meta_sha256": "af294e805893e5c59df67bb8e350b3715588b4d1febf0c05a269cbc3d0bfb566", + "meta_sha256": "d25e92fa758ea4264013b825c5121c5dd8d131086a6268d3a00d39fa7f4e03c5", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "9b0b0375b7887cf48805b3432fda42769ec97fcf0bfee18f3f1188a4c5fc2933", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_Africa_1T12/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_Africa_1T12/r00000006/n32", "files": { "multihetsep.txt": "b6b54a99d8b20cc80543a5fb3861ddae0d9524495a51362662273ec6b903a604", "phlash_contig.npz": "899cb2f46029819948dc95aabf023cccdb7a5075c9bd6118b6be65d8e0b0ae57", @@ -288,7 +288,7 @@ "view.bcf": "fa94adb61297b8daa4c823410b8b6440e843a7cc121158abbb8ac2870a911cdf", "view.bcf.csi": "3bfdbadd0d84800223fb2987610938ff729aa7554b5213c6d435054334ab2e4d" }, - "meta_sha256": "4a575de9ef371f362a8b39e08500f77c7c16e189862c12924620cd8290e9f1e4", + "meta_sha256": "5dfdcc9e4272395b6463bb4621e9e2dbb851480f590e9c57fd92e5e4fcd2d869", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "9b0b0375b7887cf48805b3432fda42769ec97fcf0bfee18f3f1188a4c5fc2933", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_Africa_1T12/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_Africa_1T12/r00000007/n32", "files": { "multihetsep.txt": "4ed0f822a281c0a6e7359270657bf2f0aa689bae7a2710163ef73b5a7f046e53", "phlash_contig.npz": "49b058d779e454948317611426e2561adfc93d0b32dbee1d489534719d8d32f3", @@ -327,7 +327,7 @@ "view.bcf": "4ede3d20a2626842b07ae9ccc132dbe8639cd1e957d1e18a90c5130320b17049", "view.bcf.csi": "23adf76d1c2a9a3876e3f211616ab45aff83123dacbe9f4f0a1b061722f6b9b2" }, - "meta_sha256": "2d25ef0119f6ade602fad10794a6874292538c13d469c8d92afa4deac0121de6", + "meta_sha256": "7881eddf51c5f778ccc9a8c6760e49be647fdb3bc1869ed3f8f1a51b4f53be73", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, diff --git a/method_inputs/a2/Africa_1T12/receipts/identity_scan_51969778.json b/method_inputs/a2/Africa_1T12/receipts/identity_scan_51969778.json index cea4c94a9ce4420b86dc1a008f78ede473981c0b..1d1074f00cbba211450d813e48f4b1b3b60855bd 100644 --- a/method_inputs/a2/Africa_1T12/receipts/identity_scan_51969778.json +++ b/method_inputs/a2/Africa_1T12/receipts/identity_scan_51969778.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "30c4e49a7d167e610fb159353a709e196069b1bfe37d025a0a2846530d250661" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T17:25:15Z" diff --git a/method_inputs/a2/Africa_1T12/receipts/open_audit_51969778.json b/method_inputs/a2/Africa_1T12/receipts/open_audit_51969778.json index 670edd4ebc84880b66a6cd51ba628cfbe8df3a48..316e2aad0db29387033e4c66183e63da292c68de 100644 --- a/method_inputs/a2/Africa_1T12/receipts/open_audit_51969778.json +++ b/method_inputs/a2/Africa_1T12/receipts/open_audit_51969778.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_Africa_1T12/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_Africa_1T12/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_Africa_1T12/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_Africa_1T12/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - 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"cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "95c87a1d77bf67d54f4a291e14c10b1f72e0383e62a3106ba02385532a056b3f", "canonical_id": "9d8887c967e740f3b37b8028ed563feb55bf02ddcd40b1fa9d88ba1173b6ab98:00000000", @@ -50,7 +50,7 @@ "view.bcf": "9aa76373796418c4a8ed2746d21598e572c3e293571a216adae0c2ace994b895", "view.bcf.csi": "a0dd44313d3896dc4d64dd661a9bb185560ba0e2c7c4ead12ec6d728d59a9e14" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "f82d75be20e2f0c81032f786885e10050a7bb2ca5c73f3a17cbe9018bb533cc4", "ladder_columns": [ 39, diff --git a/method_inputs/a2/BOT_X100_20K/r00000001/n32/meta.json b/method_inputs/a2/BOT_X100_20K/r00000001/n32/meta.json index f5c7d00f73ce305fe76e61adf9c58e9e05711601..cdd95cfbbec12d61ecbb5b792cc356e7da540fdf 100644 --- a/method_inputs/a2/BOT_X100_20K/r00000001/n32/meta.json +++ b/method_inputs/a2/BOT_X100_20K/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 57575, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "95c87a1d77bf67d54f4a291e14c10b1f72e0383e62a3106ba02385532a056b3f", "canonical_id": "9d8887c967e740f3b37b8028ed563feb55bf02ddcd40b1fa9d88ba1173b6ab98:00000001", @@ -50,7 +50,7 @@ "view.bcf": "624362c9bbd266f43d1e7db765d698a6494e51cfa2e7dcf12ece79953fbd2a9d", "view.bcf.csi": "bdd339c4ce2bb607713a5f0d86d6ab42e035b633bd2ff892459ce33ca9986205" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "f82d75be20e2f0c81032f786885e10050a7bb2ca5c73f3a17cbe9018bb533cc4", "ladder_columns": [ 16, diff --git a/method_inputs/a2/BOT_X100_20K/r00000002/n32/meta.json b/method_inputs/a2/BOT_X100_20K/r00000002/n32/meta.json index 0a2215ec6fb23e6f87e506271cd30510ff19b2ba..8e33ec0cf78ccfefedbe93062ae02fccc4de7932 100644 --- a/method_inputs/a2/BOT_X100_20K/r00000002/n32/meta.json +++ b/method_inputs/a2/BOT_X100_20K/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 57168, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "95c87a1d77bf67d54f4a291e14c10b1f72e0383e62a3106ba02385532a056b3f", "canonical_id": "9d8887c967e740f3b37b8028ed563feb55bf02ddcd40b1fa9d88ba1173b6ab98:00000002", @@ -50,7 +50,7 @@ "view.bcf": "48d6b958f32fce274bec2cae04be62e4eef5682be8f47f26de3a8460fe1bfd2e", "view.bcf.csi": "9ac14d38a9265381f2756d45d7e00842c6fa3841aeb61f7c9013557f4a6e778e" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "f82d75be20e2f0c81032f786885e10050a7bb2ca5c73f3a17cbe9018bb533cc4", "ladder_columns": [ 23, diff --git a/method_inputs/a2/BOT_X100_20K/r00000003/n32/meta.json b/method_inputs/a2/BOT_X100_20K/r00000003/n32/meta.json index f840e76eb47dafd20fff8b04b2396d95663a2a04..e23fa9dbca3d77369c0de757203bc802f284e0eb 100644 --- a/method_inputs/a2/BOT_X100_20K/r00000003/n32/meta.json +++ b/method_inputs/a2/BOT_X100_20K/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 59592, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "95c87a1d77bf67d54f4a291e14c10b1f72e0383e62a3106ba02385532a056b3f", "canonical_id": "9d8887c967e740f3b37b8028ed563feb55bf02ddcd40b1fa9d88ba1173b6ab98:00000003", @@ -50,7 +50,7 @@ "view.bcf": "785be312b42c33e6b16f8210b0a7d79d756eb6c63a55f3ca3bea95645745506b", "view.bcf.csi": "735a9f5d2d7f2fc3f008dfc3a03b4f822e0a27e15f2cc905ed12e78ad5608952" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "f82d75be20e2f0c81032f786885e10050a7bb2ca5c73f3a17cbe9018bb533cc4", "ladder_columns": [ 35, diff --git a/method_inputs/a2/BOT_X100_20K/r00000004/n32/meta.json b/method_inputs/a2/BOT_X100_20K/r00000004/n32/meta.json index c9a4364e71200a92c9c7e02ffb40c4ad907c80ef..e860615f4403d43d9e7ff607075615bdd9237675 100644 --- a/method_inputs/a2/BOT_X100_20K/r00000004/n32/meta.json +++ b/method_inputs/a2/BOT_X100_20K/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 57354, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "95c87a1d77bf67d54f4a291e14c10b1f72e0383e62a3106ba02385532a056b3f", "canonical_id": "9d8887c967e740f3b37b8028ed563feb55bf02ddcd40b1fa9d88ba1173b6ab98:00000004", @@ -50,7 +50,7 @@ "view.bcf": "7d2280b54f6fcb5a0a9c98533cec63901a9239383c2d56b201ea72cb09f81e04", "view.bcf.csi": "059f23ba394a249d985651d28f7e847f832dda73799eb8cb0c230ce268e40927" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "0c6b057c26852f7769c46ddb7c6a8ef1970617183aa2ccb7d91af3dc483de98a", "ladder_columns": [ 22, diff --git a/method_inputs/a2/BOT_X100_20K/r00000005/n32/meta.json b/method_inputs/a2/BOT_X100_20K/r00000005/n32/meta.json index 403057e269a4b9ae15d600ea16837caebd25246c..3d5adb8872c25bd71f3deb53c36ce95c11d74245 100644 --- a/method_inputs/a2/BOT_X100_20K/r00000005/n32/meta.json +++ b/method_inputs/a2/BOT_X100_20K/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 64843, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "95c87a1d77bf67d54f4a291e14c10b1f72e0383e62a3106ba02385532a056b3f", "canonical_id": "9d8887c967e740f3b37b8028ed563feb55bf02ddcd40b1fa9d88ba1173b6ab98:00000005", @@ -50,7 +50,7 @@ "view.bcf": "6a29db006cf581c341319663f6b3b2566ca18a1383fd2ef7aa1982e8477a8394", "view.bcf.csi": "98b79dee42afd2ad39e299dd4fcdb4e152f9d1733bdf0b191f5dcb6ccca97db0" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "0c6b057c26852f7769c46ddb7c6a8ef1970617183aa2ccb7d91af3dc483de98a", "ladder_columns": [ 8, diff --git a/method_inputs/a2/BOT_X100_20K/r00000006/n32/meta.json b/method_inputs/a2/BOT_X100_20K/r00000006/n32/meta.json index 7376a6a8ff680bdb43bf6c1abb60b82d4edcc01a..0424ab71947e640583f3053ec31fc63a8813468f 100644 --- a/method_inputs/a2/BOT_X100_20K/r00000006/n32/meta.json +++ b/method_inputs/a2/BOT_X100_20K/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 61010, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "95c87a1d77bf67d54f4a291e14c10b1f72e0383e62a3106ba02385532a056b3f", "canonical_id": "9d8887c967e740f3b37b8028ed563feb55bf02ddcd40b1fa9d88ba1173b6ab98:00000006", @@ -50,7 +50,7 @@ "view.bcf": "e653588e67049af66bda0b11b2aeb484a1af726c13ce38461711504be203acc0", "view.bcf.csi": "6c83935e974e9b689fb5af9445537d6125f5d85d13064eafbeedde86e8be7eca" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "0c6b057c26852f7769c46ddb7c6a8ef1970617183aa2ccb7d91af3dc483de98a", "ladder_columns": [ 60, diff --git a/method_inputs/a2/BOT_X100_20K/r00000007/n32/meta.json b/method_inputs/a2/BOT_X100_20K/r00000007/n32/meta.json index cebdb29cdbd601dd021b2ad5d2ef2bb3335699ae..d326f2ea2dde888b97d2c48a003d68491b9c2ebb 100644 --- a/method_inputs/a2/BOT_X100_20K/r00000007/n32/meta.json +++ b/method_inputs/a2/BOT_X100_20K/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 56303, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "95c87a1d77bf67d54f4a291e14c10b1f72e0383e62a3106ba02385532a056b3f", "canonical_id": "9d8887c967e740f3b37b8028ed563feb55bf02ddcd40b1fa9d88ba1173b6ab98:00000007", @@ -50,7 +50,7 @@ "view.bcf": "da2c36231e4196aa2eea3fa670a137d36434ad2309cdf5ab9f5fc8b72046a9d7", "view.bcf.csi": "6440b1939b2ee650cd770464884e39e69a9c489a2e14efc01d2a5aa50d3ad728" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "0c6b057c26852f7769c46ddb7c6a8ef1970617183aa2ccb7d91af3dc483de98a", "ladder_columns": [ 31, diff --git a/method_inputs/a2/BOT_X100_20K/receipts/export_51970175.json b/method_inputs/a2/BOT_X100_20K/receipts/export_51970175.json index 459e484add2a98594c02c5522dbdfac065b14d6f..b7b0f67298e264d0c2d9e7d2c416e4c16fb5c504 100644 --- a/method_inputs/a2/BOT_X100_20K/receipts/export_51970175.json +++ b/method_inputs/a2/BOT_X100_20K/receipts/export_51970175.json @@ -1,25 +1,25 @@ { "arm": "CLEAN_NOISE", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a2_BOT_X100_20K", "host": "cn504-15", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/receipts/identity_scan_51970175.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/receipts/identity_scan_51970175.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "a5c775e9c20cbb22524904dcb7f71cc34e95b3b420b99bf36ddba48c8f1f371b" + "sha256": "00b6185ced1e50adc99f08209fe36aaba9b37f580d907204a8d81ab6a8fbd5c7" }, "job": "51970175", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/receipts/open_audit_51970175.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/receipts/open_audit_51970175.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "95c87a1d77bf67d54f4a291e14c10b1f72e0383e62a3106ba02385532a056b3f", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000000/n32", "files": { "multihetsep.txt": "0a168efb7c54c3f95621c57e04044e3d2105c3de65527448f2ea4924f3117ce8", "phlash_contig.npz": "100b4c9b2b2d27eb2c723d8eb81cb709c8dd67d5dfc6280463ef0e5dafa1cebf", @@ -54,7 +54,7 @@ "view.bcf": "9aa76373796418c4a8ed2746d21598e572c3e293571a216adae0c2ace994b895", "view.bcf.csi": "a0dd44313d3896dc4d64dd661a9bb185560ba0e2c7c4ead12ec6d728d59a9e14" }, - "meta_sha256": "0b3975446ff780c3dd23e16a01d6fd190aaccb7afdff45df95b9042f37ce83a5", + "meta_sha256": "b142fd3f3af38a5418ba76561fa500b09c1d1d0220116658352b17c494cb0188", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "95c87a1d77bf67d54f4a291e14c10b1f72e0383e62a3106ba02385532a056b3f", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000001/n32", "files": { "multihetsep.txt": "f9b6939c710dd62f8aba7ff567bb50013988678a569338fe92ce37a484cb1d3c", "phlash_contig.npz": "9dc8e54dc0fea58019be8042c2f0f7625356e2ba5751fc617f47bdea35c2645a", @@ -93,7 +93,7 @@ "view.bcf": "624362c9bbd266f43d1e7db765d698a6494e51cfa2e7dcf12ece79953fbd2a9d", "view.bcf.csi": "bdd339c4ce2bb607713a5f0d86d6ab42e035b633bd2ff892459ce33ca9986205" }, - "meta_sha256": "935323a34e2c70eb436bbcc98e88f4a1143916b5e35949c180fb36a640af57a4", + "meta_sha256": "aa158bb8a187149157a79be1b882e5822fe45bc8ea4b304a22cdd1c1bd543cfe", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "95c87a1d77bf67d54f4a291e14c10b1f72e0383e62a3106ba02385532a056b3f", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000002/n32", "files": { "multihetsep.txt": "a4244f97459c60bcb4f64c7d382046ee61f6cfc5a99304762301e811f5f70a15", "phlash_contig.npz": "0f342b6540903401b58a90055b540ee89229066e2b82ef6dcd5215dccb306894", @@ -132,7 +132,7 @@ "view.bcf": "48d6b958f32fce274bec2cae04be62e4eef5682be8f47f26de3a8460fe1bfd2e", "view.bcf.csi": "9ac14d38a9265381f2756d45d7e00842c6fa3841aeb61f7c9013557f4a6e778e" }, - "meta_sha256": "e33eedb7129030fdb0ce39a7eac8d6ca6b636074b25908907f240982ec45d653", + "meta_sha256": "02adec05deb28d7a94890fda33311c4fa07aaab00aec737f82ee7545ce704757", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "95c87a1d77bf67d54f4a291e14c10b1f72e0383e62a3106ba02385532a056b3f", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000003/n32", "files": { "multihetsep.txt": "29e538792dfa44b1b656bb128375852b32baed12a062814c0ee36b849263943e", "phlash_contig.npz": "d8124e435649a46aa4adbfef10cf4c9c03141e94d9e9f7ed8a54584e5a33b8fe", @@ -171,7 +171,7 @@ "view.bcf": "785be312b42c33e6b16f8210b0a7d79d756eb6c63a55f3ca3bea95645745506b", "view.bcf.csi": "735a9f5d2d7f2fc3f008dfc3a03b4f822e0a27e15f2cc905ed12e78ad5608952" }, - "meta_sha256": "1fbd4ead2f500c62ae648f61ccd4d6c8da447da29210c523a510fc277cd887e1", + "meta_sha256": "db7e221b87f6279a4e745e0d7135c258393f242a216acf5b33500923df6638f4", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "95c87a1d77bf67d54f4a291e14c10b1f72e0383e62a3106ba02385532a056b3f", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000004/n32", "files": { "multihetsep.txt": "45825edb6fd688282387556ef9b8131c03dc9bb82d601bb70ea72e548d63b340", "phlash_contig.npz": "a8f9ad587a9aead74b736cffe550601a6feeb940061c3c92f0b64dade87c9c37", @@ -210,7 +210,7 @@ "view.bcf": "7d2280b54f6fcb5a0a9c98533cec63901a9239383c2d56b201ea72cb09f81e04", "view.bcf.csi": "059f23ba394a249d985651d28f7e847f832dda73799eb8cb0c230ce268e40927" }, - "meta_sha256": "64d420c7d24c99e4549cddc39293bad043b79293fb06d6231636ab3375c90234", + "meta_sha256": "9c02370ab6c6090726c061781326e74e985ef49d2fe84e6fce4d889b7fde94b9", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "95c87a1d77bf67d54f4a291e14c10b1f72e0383e62a3106ba02385532a056b3f", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000005/n32", "files": { "multihetsep.txt": "083c27f9244f0b79a02cbc8ac583c5f1dda3b780ad8c08c3f598562ea4b1327d", "phlash_contig.npz": "4592212a23fa75aae0e0e295d20a8313ae427861735047f1952d805c894606e5", @@ -249,7 +249,7 @@ "view.bcf": "6a29db006cf581c341319663f6b3b2566ca18a1383fd2ef7aa1982e8477a8394", "view.bcf.csi": "98b79dee42afd2ad39e299dd4fcdb4e152f9d1733bdf0b191f5dcb6ccca97db0" }, - "meta_sha256": "e7dfbe074f482d01bac66377daaa8169cba7862eabb6bdf6de40f3e023e5be39", + "meta_sha256": "b0b069f71f263bd5afaa040d608f6741dbefe8ff84a262c677e3580a8fe5e4fe", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "95c87a1d77bf67d54f4a291e14c10b1f72e0383e62a3106ba02385532a056b3f", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000006/n32", "files": { "multihetsep.txt": "79a05f6cf79138b4c1d98355f3c3befde79efebcdafdfce33fe7055f7d288071", "phlash_contig.npz": "50baef3c6bc47519791cd6bf782af72f138c11558d3360adcbf4f90b67505baf", @@ -288,7 +288,7 @@ "view.bcf": "e653588e67049af66bda0b11b2aeb484a1af726c13ce38461711504be203acc0", "view.bcf.csi": "6c83935e974e9b689fb5af9445537d6125f5d85d13064eafbeedde86e8be7eca" }, - "meta_sha256": "bd2f7a19af5463bff4afdb0f879e29e48375c58145414780593780bd6056c449", + "meta_sha256": "76e46fceedd74d96eae431d4b4c6a01671607e74999e3880c7bf10f69f8a2f23", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "95c87a1d77bf67d54f4a291e14c10b1f72e0383e62a3106ba02385532a056b3f", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000007/n32", "files": { "multihetsep.txt": "a891bef5b17d6f88bc2acc9f694a395498683a5e256bb9636f8c07ae02f10905", "phlash_contig.npz": "e280a5a4764061ea9e8d8eb031fca6e37a11cbd09dc7478e3ec745d45cb7a6dc", @@ -327,7 +327,7 @@ "view.bcf": "da2c36231e4196aa2eea3fa670a137d36434ad2309cdf5ab9f5fc8b72046a9d7", "view.bcf.csi": "6440b1939b2ee650cd770464884e39e69a9c489a2e14efc01d2a5aa50d3ad728" }, - "meta_sha256": "b46e57570333171648e966de7e87509e27b1dad87947a3fe5eda366492aae247", + "meta_sha256": "ee8efd99d8d0e666718fe69539d469a71bf6e62735502eabb315bf2b20151323", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, diff --git a/method_inputs/a2/BOT_X100_20K/receipts/identity_scan_51970175.json b/method_inputs/a2/BOT_X100_20K/receipts/identity_scan_51970175.json index c2a9c63ebdbfbff46a4f4cbbc4bc104f36e93bd2..3e07252f55427c216512dc9add3ba5b083f7e3a3 100644 --- a/method_inputs/a2/BOT_X100_20K/receipts/identity_scan_51970175.json +++ b/method_inputs/a2/BOT_X100_20K/receipts/identity_scan_51970175.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "9d8887c967e740f3b37b8028ed563feb55bf02ddcd40b1fa9d88ba1173b6ab98" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T17:25:12Z" diff --git a/method_inputs/a2/BOT_X100_20K/receipts/open_audit_51970175.json b/method_inputs/a2/BOT_X100_20K/receipts/open_audit_51970175.json index efe3f3ef5dbb02a2a727e1ec7c4b1ddce6bbd006..dd1cb6e23ccea2bd1512c17a0e64d4954ced8d64 100644 --- a/method_inputs/a2/BOT_X100_20K/receipts/open_audit_51970175.json +++ b/method_inputs/a2/BOT_X100_20K/receipts/open_audit_51970175.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/receipts/identity_scan_51970175.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/receipts/identity_scan_51970175.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000000/.n32.tmp-k5y38zgd/view.vcf" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000000/.n32.tmp-k5y38zgd/view.vcf" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000000/.n32.tmp-k5y38zgd/phlash_contig.npz" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000000/.n32.tmp-k5y38zgd/phlash_contig.npz" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000000/.n32.tmp-k5y38zgd/sfs_unfolded.npy" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000000/.n32.tmp-k5y38zgd/sfs_unfolded.npy" }, { "mode": "w", - 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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000001.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000001.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000001.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X100_20K/samples/.fragments/fragment_00000001.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X100_20K/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "w", - 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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000007/.n32.tmp-b92zu0ay/view.bcf" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000007/.n32.tmp-b92zu0ay/view.bcf" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000007/.n32.tmp-b92zu0ay/phlash_contig.npz" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000007/.n32.tmp-b92zu0ay/phlash_contig.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000007/.n32.tmp-b92zu0ay/sfs_unfolded.npy" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000007/.n32.tmp-b92zu0ay/sfs_unfolded.npy" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000007/.n32.tmp-b92zu0ay/meta.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000007/.n32.tmp-b92zu0ay/meta.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000007/n32/phlash_contig.npz" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000007/n32/phlash_contig.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000007/n32/sfs_unfolded.npy" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000007/n32/sfs_unfolded.npy" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000007/n32/phlash_contig.npz" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000007/n32/phlash_contig.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000007/n32/sfs_unfolded.npy" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000007/n32/sfs_unfolded.npy" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000007/n32/view.bcf" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000007/n32/view.bcf" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000007/v0_n32.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/r00000007/v0_n32.json" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/receipts/export_51970175.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X100_20K/receipts/export_51970175.json" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/events.log" + "path": "$WORK/bench_h2h_20260915/events.log" } ], "purposes": [ diff --git a/method_inputs/a2/BOT_X10_5K/r00000000/n32/meta.json b/method_inputs/a2/BOT_X10_5K/r00000000/n32/meta.json index 0afdad4cd9825c06326d1f6370c0f45b2670e382..a9019729bb1281afd5f998bba23236d280f3651e 100644 --- a/method_inputs/a2/BOT_X10_5K/r00000000/n32/meta.json +++ b/method_inputs/a2/BOT_X10_5K/r00000000/n32/meta.json @@ -2,7 +2,7 @@ "S": 60955, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "61a75363078629f096eda4d3da6e60d2efaccf2cef7b8ce1fd8f730ac118b328", "canonical_id": "4b253bbf7826f03b0db9754a9b6a4d9e303f0818cda0f19d4d4abe5d20204c2f:00000000", @@ -50,7 +50,7 @@ "view.bcf": "fdadb3eb3ff3d7c6137a60982486c779d40ff2a84e740f46fd9dfe1a1cb4c030", "view.bcf.csi": "81b6b617f3a0127238b665ea1d9974462f2ff564bda7b1a3463fe00d73a05f21" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "c187cb0beb58bf322417baba849a9a5bd5976c0426103d9c7a2e2fb351aee05a", "ladder_columns": [ 39, diff --git a/method_inputs/a2/BOT_X10_5K/r00000001/n32/meta.json b/method_inputs/a2/BOT_X10_5K/r00000001/n32/meta.json index 1bea2411cc79bdadb43c6ea4fec40b9cbdff9911..96a0ba1aa81a4ad50736a890d39253220cba894c 100644 --- a/method_inputs/a2/BOT_X10_5K/r00000001/n32/meta.json +++ b/method_inputs/a2/BOT_X10_5K/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 53873, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "61a75363078629f096eda4d3da6e60d2efaccf2cef7b8ce1fd8f730ac118b328", "canonical_id": "4b253bbf7826f03b0db9754a9b6a4d9e303f0818cda0f19d4d4abe5d20204c2f:00000001", @@ -50,7 +50,7 @@ "view.bcf": "25298ab4b604fac3aff665d7544d6d0179349ab13dca4982205bd2517a1b32bc", "view.bcf.csi": "56c6f8de5ebaf89d64edc7a9fd4693219b693f24a42727c455b55637ea9ce3e8" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "c187cb0beb58bf322417baba849a9a5bd5976c0426103d9c7a2e2fb351aee05a", "ladder_columns": [ 16, diff --git a/method_inputs/a2/BOT_X10_5K/r00000002/n32/meta.json b/method_inputs/a2/BOT_X10_5K/r00000002/n32/meta.json index 1416983625dca9838f6863964f6d3fd23e43887e..18a3715996ef5ab19f2122836fecec07839bfd9e 100644 --- a/method_inputs/a2/BOT_X10_5K/r00000002/n32/meta.json +++ b/method_inputs/a2/BOT_X10_5K/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 55342, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "61a75363078629f096eda4d3da6e60d2efaccf2cef7b8ce1fd8f730ac118b328", "canonical_id": "4b253bbf7826f03b0db9754a9b6a4d9e303f0818cda0f19d4d4abe5d20204c2f:00000002", @@ -50,7 +50,7 @@ "view.bcf": "77d70f0e9395b9fc43ddf70d23d9dfc4cd9c063813df0481cd8b0cb97406a6b0", "view.bcf.csi": "837c7ead4a1c0ac49ebe3448772457660b40ff54010dcdc798b15a8d221a8d14" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "c187cb0beb58bf322417baba849a9a5bd5976c0426103d9c7a2e2fb351aee05a", "ladder_columns": [ 23, diff --git a/method_inputs/a2/BOT_X10_5K/r00000003/n32/meta.json b/method_inputs/a2/BOT_X10_5K/r00000003/n32/meta.json index cc5f21f148608ae99821f9d5634ffb16739ae71c..2d289638ca0188a42efd9b0c682d3a62104890c3 100644 --- a/method_inputs/a2/BOT_X10_5K/r00000003/n32/meta.json +++ b/method_inputs/a2/BOT_X10_5K/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 54907, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "61a75363078629f096eda4d3da6e60d2efaccf2cef7b8ce1fd8f730ac118b328", "canonical_id": "4b253bbf7826f03b0db9754a9b6a4d9e303f0818cda0f19d4d4abe5d20204c2f:00000003", @@ -50,7 +50,7 @@ "view.bcf": "0488d28103b2e6b5515d7a4ddcbb50eae4b2752ee312bbee3fade593400c24d3", "view.bcf.csi": "c772e19e556891a9f3e6afda230f64b0a483eb3b210cd1e731ab4a5b8838b2f6" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "c187cb0beb58bf322417baba849a9a5bd5976c0426103d9c7a2e2fb351aee05a", "ladder_columns": [ 35, diff --git a/method_inputs/a2/BOT_X10_5K/r00000004/n32/meta.json b/method_inputs/a2/BOT_X10_5K/r00000004/n32/meta.json index 6ba8a50ff7cecc04d51bbcafc8068526ecec9634..34078733ab730dd5a759da1fb1d119f227837706 100644 --- a/method_inputs/a2/BOT_X10_5K/r00000004/n32/meta.json +++ b/method_inputs/a2/BOT_X10_5K/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 57074, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "61a75363078629f096eda4d3da6e60d2efaccf2cef7b8ce1fd8f730ac118b328", "canonical_id": "4b253bbf7826f03b0db9754a9b6a4d9e303f0818cda0f19d4d4abe5d20204c2f:00000004", @@ -50,7 +50,7 @@ "view.bcf": "398c31568762394ba37088a51279c6b1b3007d8f22c0b88adf684db5dc11ffd2", "view.bcf.csi": "b240a4096cdd01a2c7b3bf167b9dd92e67f08fedc5bddc0f5eb1992dbc4868fc" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "cec67af1a9ddecdcdf8a0e19470e81d164c067b220b3aa48536a54e3faff247b", "ladder_columns": [ 22, diff --git a/method_inputs/a2/BOT_X10_5K/r00000005/n32/meta.json b/method_inputs/a2/BOT_X10_5K/r00000005/n32/meta.json index 9d338fdb9c9652994770998a5fcb62a381a92b6d..92ac9aad9ed58b25bfe7692eb6dcb939b763e9af 100644 --- a/method_inputs/a2/BOT_X10_5K/r00000005/n32/meta.json +++ b/method_inputs/a2/BOT_X10_5K/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 53336, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "61a75363078629f096eda4d3da6e60d2efaccf2cef7b8ce1fd8f730ac118b328", "canonical_id": "4b253bbf7826f03b0db9754a9b6a4d9e303f0818cda0f19d4d4abe5d20204c2f:00000005", @@ -50,7 +50,7 @@ "view.bcf": "db7f71a11c870e1f1f9639a3c001c7620d521d1a9783a36340069e89d7d540d0", "view.bcf.csi": "8bac8a0ea6487ebf0acbf5542eea297547aa1820d329beca6dcd7c71c3c3e018" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "cec67af1a9ddecdcdf8a0e19470e81d164c067b220b3aa48536a54e3faff247b", "ladder_columns": [ 8, diff --git a/method_inputs/a2/BOT_X10_5K/r00000006/n32/meta.json b/method_inputs/a2/BOT_X10_5K/r00000006/n32/meta.json index 86639d6b8e736d1a493ec36b4861d3ab8f2f43b4..013a70bf10d4524b3d3910c268ffa646c6a04576 100644 --- a/method_inputs/a2/BOT_X10_5K/r00000006/n32/meta.json +++ b/method_inputs/a2/BOT_X10_5K/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 57731, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "61a75363078629f096eda4d3da6e60d2efaccf2cef7b8ce1fd8f730ac118b328", "canonical_id": "4b253bbf7826f03b0db9754a9b6a4d9e303f0818cda0f19d4d4abe5d20204c2f:00000006", @@ -50,7 +50,7 @@ "view.bcf": "9364694fbf05811f6641e1fc943a8a05353a2adb038af82b34607e65d9bd27c7", "view.bcf.csi": "80c0e5c88b00919840bd5e34a6c9aeb560d8fbe1db13e69a8d8583631da8c9d6" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "cec67af1a9ddecdcdf8a0e19470e81d164c067b220b3aa48536a54e3faff247b", "ladder_columns": [ 60, diff --git a/method_inputs/a2/BOT_X10_5K/r00000007/n32/meta.json b/method_inputs/a2/BOT_X10_5K/r00000007/n32/meta.json index 6cb8540ac5847b3c2f4e30baaefb8c97eb8eaae4..cf223ca9564c2b3ade3aa03bf1465c224d88054d 100644 --- a/method_inputs/a2/BOT_X10_5K/r00000007/n32/meta.json +++ b/method_inputs/a2/BOT_X10_5K/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 58732, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "61a75363078629f096eda4d3da6e60d2efaccf2cef7b8ce1fd8f730ac118b328", "canonical_id": "4b253bbf7826f03b0db9754a9b6a4d9e303f0818cda0f19d4d4abe5d20204c2f:00000007", @@ -50,7 +50,7 @@ "view.bcf": "a2689e5d72ccc3691a5a56d506116e90966929674a79d31dc1f02f41377be4e1", "view.bcf.csi": "3bb6f780663fffca36f210e18b10d8d21e7e7dd809e1b13977fdc97af2f7cd6e" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "cec67af1a9ddecdcdf8a0e19470e81d164c067b220b3aa48536a54e3faff247b", "ladder_columns": [ 31, diff --git a/method_inputs/a2/BOT_X10_5K/receipts/export_51970173.json b/method_inputs/a2/BOT_X10_5K/receipts/export_51970173.json index 23a320cd8eadfb9dade9773eaed0bc70819d74d9..e04106ec8a0886412be978dcdd38d580496e6039 100644 --- a/method_inputs/a2/BOT_X10_5K/receipts/export_51970173.json +++ b/method_inputs/a2/BOT_X10_5K/receipts/export_51970173.json @@ -1,25 +1,25 @@ { "arm": "CLEAN_NOISE", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a2_BOT_X10_5K", "host": "cn504-15", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/receipts/identity_scan_51970173.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/receipts/identity_scan_51970173.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "a427616530fccfaff9c18cd00850bfacdc11f40ae17db7a7c92b2155d1f06e0b" + "sha256": "f19865c598ad1c150208232b6671932742dda00bb0a897f0e90fec1665249dfe" }, "job": "51970173", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/receipts/open_audit_51970173.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/receipts/open_audit_51970173.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "61a75363078629f096eda4d3da6e60d2efaccf2cef7b8ce1fd8f730ac118b328", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/n32", "files": { "multihetsep.txt": "966c93e35e40e9b6556a6ee60e7f207587a38565f789c211e70b32d1ee85dc64", "phlash_contig.npz": "ba3e9b38baf8133d0a8e9490b6ea83b59c30b7866909059a6caf985d1b2a0a9c", @@ -54,7 +54,7 @@ "view.bcf": "fdadb3eb3ff3d7c6137a60982486c779d40ff2a84e740f46fd9dfe1a1cb4c030", "view.bcf.csi": "81b6b617f3a0127238b665ea1d9974462f2ff564bda7b1a3463fe00d73a05f21" }, - "meta_sha256": "e4d2b9b587aef11800a6e986199e33c92cf758ba84c84879141297b72b47a7a3", + "meta_sha256": "93ad19b38b72413ec1cf70f1e7146e3714c3e3b3fed7719c8d61d039aa0da1a3", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "61a75363078629f096eda4d3da6e60d2efaccf2cef7b8ce1fd8f730ac118b328", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000001/n32", "files": { "multihetsep.txt": "f4ed18eeeccf6b24f65e41decde2f611708a911b9044315438ae368544a36850", "phlash_contig.npz": "d072dffa07d68008ac51d15aedc40bdc345b00a2b3451efba6404dcd07208b5d", @@ -93,7 +93,7 @@ "view.bcf": "25298ab4b604fac3aff665d7544d6d0179349ab13dca4982205bd2517a1b32bc", "view.bcf.csi": "56c6f8de5ebaf89d64edc7a9fd4693219b693f24a42727c455b55637ea9ce3e8" }, - "meta_sha256": "d7eda64ce0abb38dcd0b4f6a94c36ed09d7c5998effced5645227cef6bd8630f", + "meta_sha256": "a3dc3d5cb0358733f0a61cb3c9c320a2ea8eaae9340423361ad2f54d3384c3c6", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "61a75363078629f096eda4d3da6e60d2efaccf2cef7b8ce1fd8f730ac118b328", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000002/n32", "files": { "multihetsep.txt": "9d039b2fd14ddaf5ad3526477a9067396d082ecbcc02595cc8847169aee9c82e", "phlash_contig.npz": "7652801e6bc099df4f330f8d86348427a738aff7e90b55ec0c80657582cb8507", @@ -132,7 +132,7 @@ "view.bcf": "77d70f0e9395b9fc43ddf70d23d9dfc4cd9c063813df0481cd8b0cb97406a6b0", "view.bcf.csi": "837c7ead4a1c0ac49ebe3448772457660b40ff54010dcdc798b15a8d221a8d14" }, - "meta_sha256": "9beceb2deeba372cf667e59bc4fb90bb2eed1da027d2df89e3c32eff07f36b3e", + "meta_sha256": "e9052e71f7b7397cff76a9c08d90c1cabe64f1cf156dcec2aed333d895662c76", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "61a75363078629f096eda4d3da6e60d2efaccf2cef7b8ce1fd8f730ac118b328", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000003/n32", "files": { "multihetsep.txt": "e9c14d5874c8d02d153cbf22e714a6af7ad3e2b7704fb1b07417203f98d38bf5", "phlash_contig.npz": "36ddbbe43d48b3403420d3bb04e92a94f004676ef5ac6b4d175881fe3827bc17", @@ -171,7 +171,7 @@ "view.bcf": "0488d28103b2e6b5515d7a4ddcbb50eae4b2752ee312bbee3fade593400c24d3", "view.bcf.csi": "c772e19e556891a9f3e6afda230f64b0a483eb3b210cd1e731ab4a5b8838b2f6" }, - "meta_sha256": "285d70a2d7a1d45972f4526b935f817eaca3832e8a9e53deb1934191339871bc", + "meta_sha256": "05d9a0bc2cab1d18699832a7b77dc4d012f0fd4a52a61f8f13d4100bf71aed33", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "61a75363078629f096eda4d3da6e60d2efaccf2cef7b8ce1fd8f730ac118b328", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000004/n32", "files": { "multihetsep.txt": "3a49237b81ea6063bc7b4b7ac76491488e4a446dcd7d477d461712ce678719d8", "phlash_contig.npz": "1f82d9aa5e661b567872d9f38bc91225a4f9025dc4974ac80fcbeb64f533003b", @@ -210,7 +210,7 @@ "view.bcf": "398c31568762394ba37088a51279c6b1b3007d8f22c0b88adf684db5dc11ffd2", "view.bcf.csi": "b240a4096cdd01a2c7b3bf167b9dd92e67f08fedc5bddc0f5eb1992dbc4868fc" }, - "meta_sha256": "559a973e5e67e6a95b345cd3a43f83b592a082551a2f4a81d0aac588465a08d6", + "meta_sha256": "22f2c3742b22abf8835e61fdf136ae87d95842959df523e25cbe005a4edeeeb6", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "61a75363078629f096eda4d3da6e60d2efaccf2cef7b8ce1fd8f730ac118b328", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000005/n32", "files": { "multihetsep.txt": "780fe627d582671446ca40c49726522f8c85ea75acd05c5ad1bddfceb5ecea1c", "phlash_contig.npz": "27222d9cedde2e87bfa3d1152c86343455e9a718f560996ef6d96982b7257fcf", @@ -249,7 +249,7 @@ "view.bcf": "db7f71a11c870e1f1f9639a3c001c7620d521d1a9783a36340069e89d7d540d0", "view.bcf.csi": "8bac8a0ea6487ebf0acbf5542eea297547aa1820d329beca6dcd7c71c3c3e018" }, - "meta_sha256": "823e8c9bef411ef589ab6756fabe98ecd15ec0ebad0502346941654af7c70f17", + "meta_sha256": "5f18626efe3969757cdb8705c4a7b7af43d6eebf4f0d88b60ebb540fd0839146", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "61a75363078629f096eda4d3da6e60d2efaccf2cef7b8ce1fd8f730ac118b328", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000006/n32", "files": { "multihetsep.txt": "6606b14117133ccb7edaeb7de675a0006f303eb14c04560ff0b2e1f71909e0fb", "phlash_contig.npz": "ac16918e13d76fa0eb03b8d1f5424f978909e4f99da7812374a3fca45df2c60d", @@ -288,7 +288,7 @@ "view.bcf": "9364694fbf05811f6641e1fc943a8a05353a2adb038af82b34607e65d9bd27c7", "view.bcf.csi": "80c0e5c88b00919840bd5e34a6c9aeb560d8fbe1db13e69a8d8583631da8c9d6" }, - "meta_sha256": "3a5355a92e51d5db3aae281267f07cd9375dcf5834dcf5e9a6e07c366596584b", + "meta_sha256": "4921f920a9477b7c5a76ddbb558bca45b587241b606828f61ee36f55d0e68dcf", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "61a75363078629f096eda4d3da6e60d2efaccf2cef7b8ce1fd8f730ac118b328", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000007/n32", "files": { "multihetsep.txt": "8e2686e9e66eb491805aeb2f78101f3a71a22f2367c0651e9f042b7a8b38fceb", "phlash_contig.npz": "d5d49d24ff93b196a23fb37b011ab592fdf2b7221fccbaf113752217c78a5f89", @@ -327,7 +327,7 @@ "view.bcf": "a2689e5d72ccc3691a5a56d506116e90966929674a79d31dc1f02f41377be4e1", "view.bcf.csi": "3bb6f780663fffca36f210e18b10d8d21e7e7dd809e1b13977fdc97af2f7cd6e" }, - "meta_sha256": "f1b78e770f0c114faec94fd42e0e3d21c9d08c8ada4f730052d265e247ec19b3", + "meta_sha256": "fb6c117565fd6e0869e9f4f88e00e4e21f4c0103deebd7edf774d8c1939a278b", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, diff --git a/method_inputs/a2/BOT_X10_5K/receipts/identity_scan_51970173.json b/method_inputs/a2/BOT_X10_5K/receipts/identity_scan_51970173.json index e467f0e2377cffe970fc444d0852cc90fea1457a..84d6cad5e591f52a7b64ee26213c162879cc081a 100644 --- a/method_inputs/a2/BOT_X10_5K/receipts/identity_scan_51970173.json +++ b/method_inputs/a2/BOT_X10_5K/receipts/identity_scan_51970173.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "4b253bbf7826f03b0db9754a9b6a4d9e303f0818cda0f19d4d4abe5d20204c2f" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T17:25:12Z" diff --git a/method_inputs/a2/BOT_X10_5K/receipts/open_audit_51970173.json b/method_inputs/a2/BOT_X10_5K/receipts/open_audit_51970173.json index 080d3a4655f1a41d59db99f21451645cf7fca12d..f6a2f7e0948c3fb20aba3aed72f682fb620c4a48 100644 --- a/method_inputs/a2/BOT_X10_5K/receipts/open_audit_51970173.json +++ b/method_inputs/a2/BOT_X10_5K/receipts/open_audit_51970173.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/receipts/identity_scan_51970173.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/receipts/identity_scan_51970173.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_BOT_X10_5K/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X10_5K/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X10_5K/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a2_BOT_X10_5K/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/.n32.tmp-1p23fcxa/view.vcf" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/.n32.tmp-1p23fcxa/view.vcf" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/.n32.tmp-1p23fcxa/phlash_contig.npz" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/.n32.tmp-1p23fcxa/phlash_contig.npz" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/.n32.tmp-1p23fcxa/sfs_unfolded.npy" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/.n32.tmp-1p23fcxa/sfs_unfolded.npy" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/.n32.tmp-1p23fcxa/multihetsep.txt" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/.n32.tmp-1p23fcxa/multihetsep.txt" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/.n32.tmp-1p23fcxa/view.bcf" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/.n32.tmp-1p23fcxa/view.bcf" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/.n32.tmp-1p23fcxa/phlash_contig.npz" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/.n32.tmp-1p23fcxa/phlash_contig.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/.n32.tmp-1p23fcxa/sfs_unfolded.npy" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/.n32.tmp-1p23fcxa/sfs_unfolded.npy" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/.n32.tmp-1p23fcxa/meta.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/.n32.tmp-1p23fcxa/meta.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/n32/phlash_contig.npz" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/n32/phlash_contig.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/n32/sfs_unfolded.npy" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/n32/sfs_unfolded.npy" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/n32/phlash_contig.npz" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_BOT_X10_5K/r00000000/n32/phlash_contig.npz" }, { "mode": "r", - 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"cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_Constant/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_Constant/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "88844a4fd13c4d2359ac603b5032f464c79b9aa7efc88cb27654258810d21b00", "canonical_id": "70a4dd8cc04e46ebde5395150c209ae743b3045dec6be3b9e59f5a696f482d1f:00000000", @@ -50,7 +50,7 @@ "view.bcf": "47ac735023cc8dfc15b446400719998fde8ef9a211b51900668fbfedc8ebdacc", "view.bcf.csi": "decff8cffe1ea18434cdaed276bd10ee1afc23d326b4a062269da9f99ad304cd" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_Constant/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_Constant/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "86873502265946957e3874d3003604078c0dc49eb849ac0269ab7c39635ae927", "ladder_columns": [ 39, diff --git a/method_inputs/a2/Constant/r00000001/n32/meta.json b/method_inputs/a2/Constant/r00000001/n32/meta.json index 37b08b3ac4ad9c83423e29bd1a3228ebf517f908..bad9813af77036992c15eb445a5c360643554371 100644 --- a/method_inputs/a2/Constant/r00000001/n32/meta.json +++ b/method_inputs/a2/Constant/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 79924, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_Constant/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_Constant/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "88844a4fd13c4d2359ac603b5032f464c79b9aa7efc88cb27654258810d21b00", "canonical_id": "70a4dd8cc04e46ebde5395150c209ae743b3045dec6be3b9e59f5a696f482d1f:00000001", @@ -50,7 +50,7 @@ "view.bcf": "c99db26ab35ff6401832f6811bf312c53a74aae5acae011d003e1261956ff04e", "view.bcf.csi": "45af32e6fce616199c1c23890bffa3c6a671cbc9c079ecc8b3ca6ff85c96e60e" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_Constant/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_Constant/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "86873502265946957e3874d3003604078c0dc49eb849ac0269ab7c39635ae927", "ladder_columns": [ 16, diff --git a/method_inputs/a2/Constant/r00000002/n32/meta.json b/method_inputs/a2/Constant/r00000002/n32/meta.json index 32de51ac24684b5106d65b0bea57e7c056c07b7c..9955ac38e750cb941a0dc7482f908e31507d2a40 100644 --- a/method_inputs/a2/Constant/r00000002/n32/meta.json +++ b/method_inputs/a2/Constant/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 73478, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_Constant/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_Constant/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "88844a4fd13c4d2359ac603b5032f464c79b9aa7efc88cb27654258810d21b00", "canonical_id": "70a4dd8cc04e46ebde5395150c209ae743b3045dec6be3b9e59f5a696f482d1f:00000002", @@ -50,7 +50,7 @@ "view.bcf": "02307c0abc671f90d63953cac57b3f40d7ffc5898894fd76caa8cf1c53518d78", "view.bcf.csi": "d85d63f2f283efd4364d5839dbd77aaf74f8e718de95fb7b6e1d6a62a6b4afce" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_Constant/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_Constant/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "86873502265946957e3874d3003604078c0dc49eb849ac0269ab7c39635ae927", "ladder_columns": [ 23, diff --git a/method_inputs/a2/Constant/r00000003/n32/meta.json b/method_inputs/a2/Constant/r00000003/n32/meta.json index ccc93645d272d8e6686f1948c1fa8931592c3b2c..911d4549d3dc56155d3d75effc75344b9a4e578e 100644 --- a/method_inputs/a2/Constant/r00000003/n32/meta.json +++ b/method_inputs/a2/Constant/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 79485, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_Constant/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_Constant/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "88844a4fd13c4d2359ac603b5032f464c79b9aa7efc88cb27654258810d21b00", "canonical_id": "70a4dd8cc04e46ebde5395150c209ae743b3045dec6be3b9e59f5a696f482d1f:00000003", @@ -50,7 +50,7 @@ "view.bcf": "48202f6e341d10cb816cddf064e778b4fce51506d7f120149edb8d5271f01b90", "view.bcf.csi": "c1a7470937d31ce1840abe0a137af8601fd2b3b3c0ad327ad0cb9277966b2cb0" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_Constant/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_Constant/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "86873502265946957e3874d3003604078c0dc49eb849ac0269ab7c39635ae927", "ladder_columns": [ 35, diff --git a/method_inputs/a2/Constant/r00000004/n32/meta.json b/method_inputs/a2/Constant/r00000004/n32/meta.json index 0e45c5a35350904f0a6b7cf98b4ef9f7c72a90ea..1a51bce9cf9df197e7dea71fe3716b4e6de1bd8e 100644 --- a/method_inputs/a2/Constant/r00000004/n32/meta.json +++ b/method_inputs/a2/Constant/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 72547, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_Constant/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_Constant/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "88844a4fd13c4d2359ac603b5032f464c79b9aa7efc88cb27654258810d21b00", "canonical_id": "70a4dd8cc04e46ebde5395150c209ae743b3045dec6be3b9e59f5a696f482d1f:00000004", @@ -50,7 +50,7 @@ "view.bcf": "c71cc08e4e8e6e5e8831206c830f79250afd329b61a038db6a667698ff4439ad", "view.bcf.csi": "f7573b6c98542419aa1971dced0121e09aa0a5936ed4a02de9d1570587983815" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_Constant/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_Constant/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "8ae01094f0d34b104c2e3549f9b7b409548f2fc9dab08ab6d3736942aa641159", "ladder_columns": [ 22, diff --git a/method_inputs/a2/Constant/r00000005/n32/meta.json b/method_inputs/a2/Constant/r00000005/n32/meta.json index 928dc49d4b77837d7ed53399bbb44d5213599384..9f4450a74c73c9878122cb3497934092f5bfd4e3 100644 --- a/method_inputs/a2/Constant/r00000005/n32/meta.json +++ b/method_inputs/a2/Constant/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 73442, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_Constant/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_Constant/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "88844a4fd13c4d2359ac603b5032f464c79b9aa7efc88cb27654258810d21b00", "canonical_id": "70a4dd8cc04e46ebde5395150c209ae743b3045dec6be3b9e59f5a696f482d1f:00000005", @@ -50,7 +50,7 @@ "view.bcf": "16e6585f41b2ac694f23008dccf40acb3762b18172bbc9bfd31d601efd9667c8", "view.bcf.csi": "c1ee09fdf8269b7a5ede465dcdb98d3d6d71805fcaf6db66977787a9e3c50bea" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_Constant/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_Constant/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "8ae01094f0d34b104c2e3549f9b7b409548f2fc9dab08ab6d3736942aa641159", "ladder_columns": [ 8, diff --git a/method_inputs/a2/Constant/r00000006/n32/meta.json b/method_inputs/a2/Constant/r00000006/n32/meta.json index 294eb4bc72dbfb816175b6da5e2b0e5071609a36..8b4a1c93a31015a30f2da1d48127c275f3111248 100644 --- a/method_inputs/a2/Constant/r00000006/n32/meta.json +++ b/method_inputs/a2/Constant/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 70406, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_Constant/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_Constant/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "88844a4fd13c4d2359ac603b5032f464c79b9aa7efc88cb27654258810d21b00", "canonical_id": "70a4dd8cc04e46ebde5395150c209ae743b3045dec6be3b9e59f5a696f482d1f:00000006", @@ -50,7 +50,7 @@ "view.bcf": "3784ee179067eafdb49369bd5c1ca589a458cc8bd737031c733350d95bae00df", "view.bcf.csi": "4d4dcb5a530bde2c5ec1ef4ae1bebeffa2e20fbe0973b5d08d4111ed338a1660" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_Constant/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_Constant/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "8ae01094f0d34b104c2e3549f9b7b409548f2fc9dab08ab6d3736942aa641159", "ladder_columns": [ 60, diff --git a/method_inputs/a2/Constant/r00000007/n32/meta.json b/method_inputs/a2/Constant/r00000007/n32/meta.json index 5788f91358769fe35a5adfe9f41946b4cb4f13c0..6572912268b06433699096ec17450afae02d460c 100644 --- a/method_inputs/a2/Constant/r00000007/n32/meta.json +++ b/method_inputs/a2/Constant/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 73618, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_Constant/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_Constant/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "88844a4fd13c4d2359ac603b5032f464c79b9aa7efc88cb27654258810d21b00", "canonical_id": "70a4dd8cc04e46ebde5395150c209ae743b3045dec6be3b9e59f5a696f482d1f:00000007", @@ -50,7 +50,7 @@ "view.bcf": "c797ada2ecc8daaa63b1ca5107c9a5e2a6010ccb22964dba4c23bca556e1e31e", "view.bcf.csi": "f173f86bf9525e1061aeac666e69ffe6cda74239751c31e8de9c6e80be5afeb5" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_Constant/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_Constant/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "8ae01094f0d34b104c2e3549f9b7b409548f2fc9dab08ab6d3736942aa641159", "ladder_columns": [ 31, diff --git a/method_inputs/a2/Constant/receipts/export_51970291.json b/method_inputs/a2/Constant/receipts/export_51970291.json index 8776d85ea2f77ec0ddd717177cbc66fb184b87c3..d0aeee66b6479c6aa211dce7fcb229bca859c707 100644 --- a/method_inputs/a2/Constant/receipts/export_51970291.json +++ b/method_inputs/a2/Constant/receipts/export_51970291.json @@ -1,25 +1,25 @@ { "arm": "CLEAN_NOISE", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a2_Constant", "host": "cn511-03", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_Constant/receipts/identity_scan_51970291.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a2_Constant/receipts/identity_scan_51970291.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "ea0de659056c8a2366edc31fbf4c9e86dd6f222386d8b313dff86399efd4e868" + "sha256": "95f31511baf33a65855a01fcc2131126c548fc488d2631fb9bfee03b9aa91727" }, "job": "51970291", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_Constant/receipts/open_audit_51970291.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a2_Constant/receipts/open_audit_51970291.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "88844a4fd13c4d2359ac603b5032f464c79b9aa7efc88cb27654258810d21b00", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_Constant/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_Constant/r00000000/n32", "files": { "multihetsep.txt": "3e5538ca6e264bd37083508df17c022189eb0d7fea1db6b5abb98eacbe471540", "phlash_contig.npz": "a341e255d2057407727f53a801d93de87be863c81922982addc554e3ee63f2bf", @@ -54,7 +54,7 @@ "view.bcf": "47ac735023cc8dfc15b446400719998fde8ef9a211b51900668fbfedc8ebdacc", "view.bcf.csi": "decff8cffe1ea18434cdaed276bd10ee1afc23d326b4a062269da9f99ad304cd" }, - "meta_sha256": "a884b9835de1b046ea976b6dd4d59ae6bfd574810a5d22a8dbffac6b6829c67f", + "meta_sha256": "a63815cce9afc13f97a937b5e98703993098b001ae8a77bec3b784d6403a5838", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "88844a4fd13c4d2359ac603b5032f464c79b9aa7efc88cb27654258810d21b00", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_Constant/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_Constant/r00000001/n32", "files": { "multihetsep.txt": "be67bff2af674893f0e850883152948b6d2588fa205267f5c75b4c3576147d7b", "phlash_contig.npz": "33007d496d38744bf21a9af16832cf5b97a07ddaf79fa56cf2104bf96ee55f71", @@ -93,7 +93,7 @@ "view.bcf": "c99db26ab35ff6401832f6811bf312c53a74aae5acae011d003e1261956ff04e", "view.bcf.csi": "45af32e6fce616199c1c23890bffa3c6a671cbc9c079ecc8b3ca6ff85c96e60e" }, - "meta_sha256": "684f4f79872fb6fc39f092ab4413b06cf03508978c45de06bb51f151d5b36187", + "meta_sha256": "cbfd747cdd94941514c2c320767b47f46a50f2688ef681b8b173e4fed7e45cad", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "88844a4fd13c4d2359ac603b5032f464c79b9aa7efc88cb27654258810d21b00", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_Constant/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_Constant/r00000002/n32", "files": { "multihetsep.txt": "a23f102110c995ea317a5e5f6af068c0ece7d451690b635629b752621843c29f", "phlash_contig.npz": "e80369f45673d9b7ef2abbfd07acf8c3950af5eff7a6e40c3acb59e9c2ebd2f1", @@ -132,7 +132,7 @@ "view.bcf": "02307c0abc671f90d63953cac57b3f40d7ffc5898894fd76caa8cf1c53518d78", "view.bcf.csi": "d85d63f2f283efd4364d5839dbd77aaf74f8e718de95fb7b6e1d6a62a6b4afce" }, - "meta_sha256": "7d985b14725454be534e69d6e86439a7fafcc05b77261beaeb88f68a7b841aa0", + "meta_sha256": "78658030eabb6c8e2318c95f10d33d0c9c88e738e7e9ba08f8141294121e024e", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "88844a4fd13c4d2359ac603b5032f464c79b9aa7efc88cb27654258810d21b00", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_Constant/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_Constant/r00000003/n32", "files": { "multihetsep.txt": "fa7967bc2b8e3d457a619afc1a3bfc48d34849b225ee1c7c953db35e55a48600", "phlash_contig.npz": "23949f5d773b65eb13e64415d2b8b3bae72200840facfc3b21300c470fc237cb", @@ -171,7 +171,7 @@ "view.bcf": "48202f6e341d10cb816cddf064e778b4fce51506d7f120149edb8d5271f01b90", "view.bcf.csi": "c1a7470937d31ce1840abe0a137af8601fd2b3b3c0ad327ad0cb9277966b2cb0" }, - "meta_sha256": "d587cbc0f2a846c30fb4a8a1da526aa75ad8c1a78664255028b414773398d1cc", + "meta_sha256": "bbb6b8576ac15c5715b4043a8d695e78509bbaeddd420bae2a6f5afdaba316c5", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "88844a4fd13c4d2359ac603b5032f464c79b9aa7efc88cb27654258810d21b00", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_Constant/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_Constant/r00000004/n32", "files": { "multihetsep.txt": "02f8d738a19a4e084b8bba95139b472ff14da332ec8954a9143d88713bb69d10", "phlash_contig.npz": "cf7b0273c49fbaa9c57ac1504702ce671e9caa691eec617f2e59ef2f8d77f9e5", @@ -210,7 +210,7 @@ "view.bcf": "c71cc08e4e8e6e5e8831206c830f79250afd329b61a038db6a667698ff4439ad", "view.bcf.csi": "f7573b6c98542419aa1971dced0121e09aa0a5936ed4a02de9d1570587983815" }, - "meta_sha256": "78a8306ff9864b2e9b427aa1b4df55c68e651e53b1f3e9753fb7f64e5eabbdd2", + "meta_sha256": "e65a1733c95ed540ab2c949af712d0b8117af0f5f64899cfd02c9a1111d9cdf0", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "88844a4fd13c4d2359ac603b5032f464c79b9aa7efc88cb27654258810d21b00", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_Constant/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_Constant/r00000005/n32", "files": { "multihetsep.txt": "803a31a8a14575cf25b2f4c622fe5b8cca35d1526c2fae6605aa548c44102001", "phlash_contig.npz": "112a76cc556e8b80b1af1abf8efa696bfac4d7c31af18791be0fe8da353a4541", @@ -249,7 +249,7 @@ "view.bcf": "16e6585f41b2ac694f23008dccf40acb3762b18172bbc9bfd31d601efd9667c8", "view.bcf.csi": "c1ee09fdf8269b7a5ede465dcdb98d3d6d71805fcaf6db66977787a9e3c50bea" }, - "meta_sha256": "83dada2af61fb66034a7d6997b2bd767f5cf5ef6832ff6d8e6fc4d656469bac9", + "meta_sha256": "8325abc0969096567736efef735447c3bc84003599fc43563cd0923a10c2e18b", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "88844a4fd13c4d2359ac603b5032f464c79b9aa7efc88cb27654258810d21b00", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_Constant/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_Constant/r00000006/n32", "files": { "multihetsep.txt": "fa61aa1d5898109f8d95c28afc946627da21ff1045a7ee52253ed4751d989b72", "phlash_contig.npz": "d4c8a350ce105726b02e758233e722e735ac25a73938810af2a6b7062aad31d8", @@ -288,7 +288,7 @@ "view.bcf": "3784ee179067eafdb49369bd5c1ca589a458cc8bd737031c733350d95bae00df", "view.bcf.csi": "4d4dcb5a530bde2c5ec1ef4ae1bebeffa2e20fbe0973b5d08d4111ed338a1660" }, - "meta_sha256": "26d66bc571f3f9b413c07de2209bbef55d7e82ecc7e2c9ca284fe7fa75241261", + "meta_sha256": "866cee5bff1626f431eff5d9d6005fa479244a0582f2ce16fcc7160bb4ca9cc8", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "88844a4fd13c4d2359ac603b5032f464c79b9aa7efc88cb27654258810d21b00", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_Constant/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_Constant/r00000007/n32", "files": { "multihetsep.txt": "847c1d0fdd60326bbda59b4a557979bf6160aca07a809fa7d9d8ee7341769c0b", "phlash_contig.npz": "17f238fb2e327c0f09e002b3d9165ba865ee80948cf9a91b86a99f4fd00664c3", @@ -327,7 +327,7 @@ "view.bcf": "c797ada2ecc8daaa63b1ca5107c9a5e2a6010ccb22964dba4c23bca556e1e31e", "view.bcf.csi": "f173f86bf9525e1061aeac666e69ffe6cda74239751c31e8de9c6e80be5afeb5" }, - "meta_sha256": "efdccb6e484169aa908bf53e479ea810075cca584eecbc1aa39559ee05ebfa9c", + "meta_sha256": "4bafa6863b859994adc688e11b3a9628f8431e64363ce189b7dd68de8abe5f67", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, diff --git a/method_inputs/a2/Constant/receipts/identity_scan_51970291.json b/method_inputs/a2/Constant/receipts/identity_scan_51970291.json index 5367eaa12afb9888f807c1160aa47cfcbacd1d27..3ec03ec1264b7a74b1a112d5921b6323726e4413 100644 --- a/method_inputs/a2/Constant/receipts/identity_scan_51970291.json +++ b/method_inputs/a2/Constant/receipts/identity_scan_51970291.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "70a4dd8cc04e46ebde5395150c209ae743b3045dec6be3b9e59f5a696f482d1f" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T17:25:14Z" diff --git a/method_inputs/a2/Constant/receipts/open_audit_51970291.json b/method_inputs/a2/Constant/receipts/open_audit_51970291.json index fadbb8b6d52e5ea38c0a12fae96a9d413ea4aaad..405b3d20f2eadcea8ac90f8b97c5dbd212cb6992 100644 --- a/method_inputs/a2/Constant/receipts/open_audit_51970291.json +++ b/method_inputs/a2/Constant/receipts/open_audit_51970291.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - 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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_Constant/receipts/export_51970291.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_Constant/receipts/export_51970291.json" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/events.log" + "path": "$WORK/bench_h2h_20260915/events.log" } ], "purposes": [ diff --git a/method_inputs/a2/EMP_CEU/r00000000/n32/meta.json b/method_inputs/a2/EMP_CEU/r00000000/n32/meta.json index 247f6314056f49ed381b07a78d86bb682311bb68..99d8a58cf510c9d8d38d94e3bd2a71f911d9394c 100644 --- a/method_inputs/a2/EMP_CEU/r00000000/n32/meta.json +++ b/method_inputs/a2/EMP_CEU/r00000000/n32/meta.json @@ -2,7 +2,7 @@ "S": 116401, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_EMP_CEU/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_EMP_CEU/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "1e8a144e18664293604c89139037b88b9ec89f6b519bc1cea9522fae90bd0432", "canonical_id": "697a44a83158406e8e4ff15f7bbccd09e3bf27c905e1312f41ed4c748b79d706:00000000", @@ -50,7 +50,7 @@ "view.bcf": "9a28fe007e1c6ec54cc29328cd5efe727c1d576df7350cf458ff1f2090207ed6", "view.bcf.csi": "21ecb3220a127d1a46cf86f5049c090f997c814d7e805b8f17519a139e4a3069" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "5626e5cf0a56dea1e95165d68b4dc417f21d3ef0ec0363474b70798b9239bb4e", "ladder_columns": [ 39, diff --git a/method_inputs/a2/EMP_CEU/r00000001/n32/meta.json b/method_inputs/a2/EMP_CEU/r00000001/n32/meta.json index e0e39dc1f42c19b4af3f7e16c648f63a1e7d50d5..c5cceb39d5223eb2aa57c6a06e43d27ac7fabd82 100644 --- a/method_inputs/a2/EMP_CEU/r00000001/n32/meta.json +++ b/method_inputs/a2/EMP_CEU/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 112807, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_EMP_CEU/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_EMP_CEU/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "1e8a144e18664293604c89139037b88b9ec89f6b519bc1cea9522fae90bd0432", "canonical_id": "697a44a83158406e8e4ff15f7bbccd09e3bf27c905e1312f41ed4c748b79d706:00000001", @@ -50,7 +50,7 @@ "view.bcf": "d241620248c1efaff1f296d80f0aeca1ed228493da6b667c2cbe416e4bd09427", "view.bcf.csi": "128b8d97ca251ffc5c0b8137911ccd5d7a13ba400d75f5e4bea6f1b08f538836" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "5626e5cf0a56dea1e95165d68b4dc417f21d3ef0ec0363474b70798b9239bb4e", "ladder_columns": [ 16, diff --git a/method_inputs/a2/EMP_CEU/r00000002/n32/meta.json b/method_inputs/a2/EMP_CEU/r00000002/n32/meta.json index 2d55da78b753062d8e72cc07bf3d86c8c93952d3..e69dee32f8e44a8491f67fd49b5a09dbfb55f9d1 100644 --- a/method_inputs/a2/EMP_CEU/r00000002/n32/meta.json +++ b/method_inputs/a2/EMP_CEU/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 114258, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_EMP_CEU/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_EMP_CEU/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "1e8a144e18664293604c89139037b88b9ec89f6b519bc1cea9522fae90bd0432", "canonical_id": "697a44a83158406e8e4ff15f7bbccd09e3bf27c905e1312f41ed4c748b79d706:00000002", @@ -50,7 +50,7 @@ "view.bcf": "b3eeadf57de10570b01bef0d72bac2ec59f44a42460787c7472c9d98d98b41ac", "view.bcf.csi": "6a82a3827e16d89417b123af25b4f0b942b949b97fec0add5f1e1343883cb411" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "5626e5cf0a56dea1e95165d68b4dc417f21d3ef0ec0363474b70798b9239bb4e", "ladder_columns": [ 23, diff --git a/method_inputs/a2/EMP_CEU/r00000003/n32/meta.json b/method_inputs/a2/EMP_CEU/r00000003/n32/meta.json index bc3ce32bb2c68e0fb2c7d4295464c9f35d70da21..6dda95fd5ab1248b69a2f2e573231e1e55499e60 100644 --- a/method_inputs/a2/EMP_CEU/r00000003/n32/meta.json +++ b/method_inputs/a2/EMP_CEU/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 116269, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_EMP_CEU/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_EMP_CEU/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "1e8a144e18664293604c89139037b88b9ec89f6b519bc1cea9522fae90bd0432", "canonical_id": "697a44a83158406e8e4ff15f7bbccd09e3bf27c905e1312f41ed4c748b79d706:00000003", @@ -50,7 +50,7 @@ "view.bcf": "d4e122329a5529d7c9fe80be517a414d05b957eb1648682dce1b555ce5ff7f99", "view.bcf.csi": "aceac4ebea7cf5efe8e335d6531cf2e079a61be500b1da6b762415aaad89f27c" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "5626e5cf0a56dea1e95165d68b4dc417f21d3ef0ec0363474b70798b9239bb4e", "ladder_columns": [ 35, diff --git a/method_inputs/a2/EMP_CEU/r00000004/n32/meta.json b/method_inputs/a2/EMP_CEU/r00000004/n32/meta.json index c2bc92ace8178a3b546c864a3f916df7624ff894..32a41e29f59b4089b5e0b6c02edb70a519dc03d5 100644 --- a/method_inputs/a2/EMP_CEU/r00000004/n32/meta.json +++ b/method_inputs/a2/EMP_CEU/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 112751, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_EMP_CEU/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_EMP_CEU/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "1e8a144e18664293604c89139037b88b9ec89f6b519bc1cea9522fae90bd0432", "canonical_id": "697a44a83158406e8e4ff15f7bbccd09e3bf27c905e1312f41ed4c748b79d706:00000004", @@ -50,7 +50,7 @@ "view.bcf": "6b510343b76462ceb7474cbdf0c07aa705f016f06533f4e7d898fe4f73c383d5", "view.bcf.csi": "ea929f1536314668328528096a097b83efe9731dcb80432612350e04d26c5829" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "a7be7551a1d8d296ff15d1418afbc505a69e359e64faae38059037dcb9904680", "ladder_columns": [ 22, diff --git a/method_inputs/a2/EMP_CEU/r00000005/n32/meta.json b/method_inputs/a2/EMP_CEU/r00000005/n32/meta.json index 6b027bcfda1aaf529b43eaa9ed933948ec9e14dc..e11222c3bf8ee87d98cf2b2e40db3d5fdff78068 100644 --- a/method_inputs/a2/EMP_CEU/r00000005/n32/meta.json +++ b/method_inputs/a2/EMP_CEU/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 116142, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_EMP_CEU/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_EMP_CEU/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "1e8a144e18664293604c89139037b88b9ec89f6b519bc1cea9522fae90bd0432", "canonical_id": "697a44a83158406e8e4ff15f7bbccd09e3bf27c905e1312f41ed4c748b79d706:00000005", @@ -50,7 +50,7 @@ "view.bcf": "84fd88098866d2516bf4051fec944982762a7564593b87425e802615b68c4ece", "view.bcf.csi": "c20dab20429125954d296edfbf7c2a014d75e102319e84b1dc95ad458acdb545" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "a7be7551a1d8d296ff15d1418afbc505a69e359e64faae38059037dcb9904680", "ladder_columns": [ 8, diff --git a/method_inputs/a2/EMP_CEU/r00000006/n32/meta.json b/method_inputs/a2/EMP_CEU/r00000006/n32/meta.json index 2f3d0fc94c9f5ea09d91adc078452bd3f399f394..6be78ba8fe3f6e1371d805221f0b62d51e3cfb8a 100644 --- a/method_inputs/a2/EMP_CEU/r00000006/n32/meta.json +++ b/method_inputs/a2/EMP_CEU/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 114636, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_EMP_CEU/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_EMP_CEU/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "1e8a144e18664293604c89139037b88b9ec89f6b519bc1cea9522fae90bd0432", "canonical_id": "697a44a83158406e8e4ff15f7bbccd09e3bf27c905e1312f41ed4c748b79d706:00000006", @@ -50,7 +50,7 @@ "view.bcf": "970c6090699be408d7a607cbce81f7b246c35efbd2e5bb449d9cc7b0645fd3ca", "view.bcf.csi": "e80a940645889cfe073b37dc3353d6f68ad122b4e9c509988ad232cc532e3d42" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "a7be7551a1d8d296ff15d1418afbc505a69e359e64faae38059037dcb9904680", "ladder_columns": [ 60, diff --git a/method_inputs/a2/EMP_CEU/r00000007/n32/meta.json b/method_inputs/a2/EMP_CEU/r00000007/n32/meta.json index f615dba747545ef381a65c2d7ff876a740a9106d..47d72fa932b9b53bc2e30c97912b3050e533ecf2 100644 --- a/method_inputs/a2/EMP_CEU/r00000007/n32/meta.json +++ b/method_inputs/a2/EMP_CEU/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 115126, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_EMP_CEU/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_EMP_CEU/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "1e8a144e18664293604c89139037b88b9ec89f6b519bc1cea9522fae90bd0432", "canonical_id": "697a44a83158406e8e4ff15f7bbccd09e3bf27c905e1312f41ed4c748b79d706:00000007", @@ -50,7 +50,7 @@ "view.bcf": "5f0c3617cd3e4d875ff0af9cc8af2ee9a9a60e31d4bc5604aa24e92d1bf56807", "view.bcf.csi": "4c0481138e2c73ed6530e6dceefd8a561e642cec38e74e116976bc8b9ad5d4f5" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "a7be7551a1d8d296ff15d1418afbc505a69e359e64faae38059037dcb9904680", "ladder_columns": [ 31, diff --git a/method_inputs/a2/EMP_CEU/receipts/export_51970049.json b/method_inputs/a2/EMP_CEU/receipts/export_51970049.json index 36dda8ad6ce1e6736b02d3d8c75049d361ddce09..b267a911fa797ef4627fdd6477a60012a9a99e9d 100644 --- a/method_inputs/a2/EMP_CEU/receipts/export_51970049.json +++ b/method_inputs/a2/EMP_CEU/receipts/export_51970049.json @@ -1,25 +1,25 @@ { "arm": "CLEAN_NOISE", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a2_EMP_CEU", "host": "cn113-35-l", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_CEU/receipts/identity_scan_51970049.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_CEU/receipts/identity_scan_51970049.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "ce3c479d3604dcb6f2b097c4bc69fc9ca8b742f1eb6618cff66e3124951f5f19" + "sha256": "6832cadaf18f603e790289573c54aec889ef30d73903a398d4f7e209bc9086fc" }, "job": "51970049", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_CEU/receipts/open_audit_51970049.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_CEU/receipts/open_audit_51970049.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "1e8a144e18664293604c89139037b88b9ec89f6b519bc1cea9522fae90bd0432", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000000/n32", "files": { "multihetsep.txt": "fbc46a58319a737836d2a309bdf92c1a7dd4534bf34379d444d2e0a5a2904410", "phlash_contig.npz": "2390b376ff02e7fd5abc00e904ca923c9c5a342f63ba722e75eaffe62072aafe", @@ -54,7 +54,7 @@ "view.bcf": "9a28fe007e1c6ec54cc29328cd5efe727c1d576df7350cf458ff1f2090207ed6", "view.bcf.csi": "21ecb3220a127d1a46cf86f5049c090f997c814d7e805b8f17519a139e4a3069" }, - "meta_sha256": "9f60012fdad555fb8e1c2f5838d2493a1a9d196fd9381574d29f523841d4463c", + "meta_sha256": "9f59e74f9b24730abdf46acdc05e15352cee4b9428a40691f400ba6028174c49", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "1e8a144e18664293604c89139037b88b9ec89f6b519bc1cea9522fae90bd0432", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000001/n32", "files": { "multihetsep.txt": "c70d180c55b1613ab10c6db8aadc005d889cc5aac89950b628d756879f3075a4", "phlash_contig.npz": "885b367e9c3fd72d07343a77c48124c56003dc5edd1ac69569a4846db7d5d765", @@ -93,7 +93,7 @@ "view.bcf": "d241620248c1efaff1f296d80f0aeca1ed228493da6b667c2cbe416e4bd09427", "view.bcf.csi": "128b8d97ca251ffc5c0b8137911ccd5d7a13ba400d75f5e4bea6f1b08f538836" }, - "meta_sha256": "acf4992f618ec1bad51950530ef8cddd71b36090c5da85ac9b4d6e5a7f9e51eb", + "meta_sha256": "f8990c5ee339b74e64855b73740edfe714d87a1bc26d6d2b18f38af1d355b479", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "1e8a144e18664293604c89139037b88b9ec89f6b519bc1cea9522fae90bd0432", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000002/n32", "files": { "multihetsep.txt": "a792c8f15a5c536b8144a6e6fdd797ae82227db587894fe015f79e14623f716e", "phlash_contig.npz": "beb1bb47c7f04cafbfcffb2ca376518ec1db41ac180a8d4580d1483ba0004f36", @@ -132,7 +132,7 @@ "view.bcf": "b3eeadf57de10570b01bef0d72bac2ec59f44a42460787c7472c9d98d98b41ac", "view.bcf.csi": "6a82a3827e16d89417b123af25b4f0b942b949b97fec0add5f1e1343883cb411" }, - "meta_sha256": "b5d08f8cb94e21df5cde5ca0801d393240d71d4f3578454dd3bffd0c05c1fc40", + "meta_sha256": "6eccfeddf2b9969befa77a1c6c4ffd5004d3fe4c6c34cec703dfa00321d6ffef", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "1e8a144e18664293604c89139037b88b9ec89f6b519bc1cea9522fae90bd0432", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000003/n32", "files": { "multihetsep.txt": "12f24caa0fddf2e715d44980584ac393142eb43a34318d19c502bf65ab9fecec", "phlash_contig.npz": "e6fd0323f079617b0dbaf8702e17797f262f645758d78b141241e066067a9164", @@ -171,7 +171,7 @@ "view.bcf": "d4e122329a5529d7c9fe80be517a414d05b957eb1648682dce1b555ce5ff7f99", "view.bcf.csi": "aceac4ebea7cf5efe8e335d6531cf2e079a61be500b1da6b762415aaad89f27c" }, - "meta_sha256": "4a6123825d35e864201acea4b26109ca6bad46a23e4629360d0aaebfb8f1ebc1", + "meta_sha256": "8765c3f0f9c5a746441d104a9727a241be73d706a4ef478b3acdabc47706a67d", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "1e8a144e18664293604c89139037b88b9ec89f6b519bc1cea9522fae90bd0432", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000004/n32", "files": { "multihetsep.txt": "7f8e292f843589d5ebf0d76509f0e531dc8c7f2e42e754e741ccccab9b2f0111", "phlash_contig.npz": "fb28ab049176cf08e247a5660817b08f36d3f60730a604773fd65fc34a5a3a72", @@ -210,7 +210,7 @@ "view.bcf": "6b510343b76462ceb7474cbdf0c07aa705f016f06533f4e7d898fe4f73c383d5", "view.bcf.csi": "ea929f1536314668328528096a097b83efe9731dcb80432612350e04d26c5829" }, - "meta_sha256": "596f64ab76fefe101a37818937d4c178aadbcad2a057d771fa5d1b22df4b3541", + "meta_sha256": "e3325de6e15f9db399f53c37faf21d05cfba3ef131eb88b7da5f152d43694a60", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "1e8a144e18664293604c89139037b88b9ec89f6b519bc1cea9522fae90bd0432", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000005/n32", "files": { "multihetsep.txt": "23cf189c1da839f04210f345971cfa12a693191bae30d27c141b247193b0bb00", "phlash_contig.npz": "8940e33f455692f510e7a8fb6c9f8b0b2576c8f2d60b5a3b75b69534e466c4e0", @@ -249,7 +249,7 @@ "view.bcf": "84fd88098866d2516bf4051fec944982762a7564593b87425e802615b68c4ece", "view.bcf.csi": "c20dab20429125954d296edfbf7c2a014d75e102319e84b1dc95ad458acdb545" }, - "meta_sha256": "926a83f9b7c89b6919928961fe79420fcaf52aa14fe94b1f9ec463eeb0ff0848", + "meta_sha256": "35f9f7ec8b25267427c80c05f220df9c5feb5ac370822503f1148540bac7d577", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "1e8a144e18664293604c89139037b88b9ec89f6b519bc1cea9522fae90bd0432", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000006/n32", "files": { "multihetsep.txt": "02e7359ab38e15836898ffefc9e747fd7833488182dece95dda2e2071989103e", "phlash_contig.npz": "2fd67f112ddd2c38055c0f60981743666e3a04fdd327bb3782e8a0719d312268", @@ -288,7 +288,7 @@ "view.bcf": "970c6090699be408d7a607cbce81f7b246c35efbd2e5bb449d9cc7b0645fd3ca", "view.bcf.csi": "e80a940645889cfe073b37dc3353d6f68ad122b4e9c509988ad232cc532e3d42" }, - "meta_sha256": "10db4784edf7ded5d2fa38b3f585f14f2714c4600c5fa648d80d1746ea0c92ba", + "meta_sha256": "4cb5d928c34e2114e9c57332154f18bdf89c71e2f5d1548923c7a9cd028819c5", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "1e8a144e18664293604c89139037b88b9ec89f6b519bc1cea9522fae90bd0432", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000007/n32", "files": { "multihetsep.txt": "5861d209d8529e0c07be3790a247f674e1948c65064903a5727de83d9a6c8103", "phlash_contig.npz": "5cb2be5e9afca51ee8e9ff1433e7c0a30f316960c865784957f90511f603e31c", @@ -327,7 +327,7 @@ "view.bcf": "5f0c3617cd3e4d875ff0af9cc8af2ee9a9a60e31d4bc5604aa24e92d1bf56807", "view.bcf.csi": "4c0481138e2c73ed6530e6dceefd8a561e642cec38e74e116976bc8b9ad5d4f5" }, - "meta_sha256": "803e66429cd9705d1d0e12667e96bbe3d9f0f2515674be00612fdcf9baa03bb7", + "meta_sha256": "f4642fcdbe94c79485be364fbbbfb621a88ec27dacd7b71931513067f4c45fee", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, diff --git a/method_inputs/a2/EMP_CEU/receipts/identity_scan_51970049.json b/method_inputs/a2/EMP_CEU/receipts/identity_scan_51970049.json index 76f694c01f985ba12669880309fa1a621a9f1c86..38e49f073592ef00b4088af79ded9af9e4e3de52 100644 --- a/method_inputs/a2/EMP_CEU/receipts/identity_scan_51970049.json +++ b/method_inputs/a2/EMP_CEU/receipts/identity_scan_51970049.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "697a44a83158406e8e4ff15f7bbccd09e3bf27c905e1312f41ed4c748b79d706" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T17:25:12Z" diff --git a/method_inputs/a2/EMP_CEU/receipts/open_audit_51970049.json b/method_inputs/a2/EMP_CEU/receipts/open_audit_51970049.json index daa6a4b158c61725f5d21569162fd68e25f19790..865fbb74f50a643ae9007991182fdfab78730f03 100644 --- a/method_inputs/a2/EMP_CEU/receipts/open_audit_51970049.json +++ b/method_inputs/a2/EMP_CEU/receipts/open_audit_51970049.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_CEU/receipts/identity_scan_51970049.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_CEU/receipts/identity_scan_51970049.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_CEU/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_EMP_CEU/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a2_EMP_CEU/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_EMP_CEU/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a2_EMP_CEU/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_EMP_CEU/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a2_EMP_CEU/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000000/.n32.tmp-q3nbskx2/view.vcf" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000000/.n32.tmp-q3nbskx2/view.vcf" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000000/.n32.tmp-q3nbskx2/phlash_contig.npz" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000000/.n32.tmp-q3nbskx2/phlash_contig.npz" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000000/.n32.tmp-q3nbskx2/sfs_unfolded.npy" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000000/.n32.tmp-q3nbskx2/sfs_unfolded.npy" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000000/.n32.tmp-q3nbskx2/multihetsep.txt" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000000/.n32.tmp-q3nbskx2/multihetsep.txt" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000000/.n32.tmp-q3nbskx2/view.bcf" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000000/.n32.tmp-q3nbskx2/view.bcf" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000000/.n32.tmp-q3nbskx2/phlash_contig.npz" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_CEU/r00000000/.n32.tmp-q3nbskx2/phlash_contig.npz" }, { "mode": "r", - 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"cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "c6fd52d3a99a041c099bef9edb57186be2ae394ca3e52b7f8e5ba65c4932d026", "canonical_id": "55ef6ad4e995be51692ede8fd4a789e0f2ce2052e36fd06f33195baac70d3673:00000000", @@ -50,7 +50,7 @@ "view.bcf": "067a05d2c0620eda1c0275ac261f8fd721cc852baca821822371d47028e71f76", "view.bcf.csi": "f6c9b2d78a70f6570ea7b47e59f75279399caa4343d60ffe6d54640436149265" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "0805ad12031c1b82b5470db02553f94e8110f9c5b3a7795214f27b151bdfac9a", "ladder_columns": [ 39, diff --git a/method_inputs/a2/EMP_YRI/r00000001/n32/meta.json b/method_inputs/a2/EMP_YRI/r00000001/n32/meta.json index 24439c19cd8f8dc1a6b747fc1630c204c8639830..88b05037398041290cd7956e5d35465077c3ec29 100644 --- a/method_inputs/a2/EMP_YRI/r00000001/n32/meta.json +++ b/method_inputs/a2/EMP_YRI/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 182885, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "c6fd52d3a99a041c099bef9edb57186be2ae394ca3e52b7f8e5ba65c4932d026", "canonical_id": "55ef6ad4e995be51692ede8fd4a789e0f2ce2052e36fd06f33195baac70d3673:00000001", @@ -50,7 +50,7 @@ "view.bcf": "4ceaf3108157702e31b789dca24887a1f213a316450bc0a32451f0b5630701ad", "view.bcf.csi": "c12dc85818bc04ed9bda6442b4c78cfecc45e23c5683460f376cf66d7cdef929" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "0805ad12031c1b82b5470db02553f94e8110f9c5b3a7795214f27b151bdfac9a", "ladder_columns": [ 16, diff --git a/method_inputs/a2/EMP_YRI/r00000002/n32/meta.json b/method_inputs/a2/EMP_YRI/r00000002/n32/meta.json index da10ab2606188fbde953adbcfa70c7c11c305469..03de06962def7f95b0a25c26c2ffb9119c1045c0 100644 --- a/method_inputs/a2/EMP_YRI/r00000002/n32/meta.json +++ b/method_inputs/a2/EMP_YRI/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 182156, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "c6fd52d3a99a041c099bef9edb57186be2ae394ca3e52b7f8e5ba65c4932d026", "canonical_id": "55ef6ad4e995be51692ede8fd4a789e0f2ce2052e36fd06f33195baac70d3673:00000002", @@ -50,7 +50,7 @@ "view.bcf": "2ecd22421e53b89781a4115676ba8cb733c9e44383a9a5c2d397ba382c8ce39c", "view.bcf.csi": "960af4dd488d5ca4f594e3a0770accd3253370cf7a9f550ba2a7a14f9223a3f5" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "0805ad12031c1b82b5470db02553f94e8110f9c5b3a7795214f27b151bdfac9a", "ladder_columns": [ 23, diff --git a/method_inputs/a2/EMP_YRI/r00000003/n32/meta.json b/method_inputs/a2/EMP_YRI/r00000003/n32/meta.json index 765c3dc946180e0a5cb69c7216d772de1545f86e..427ce65e59392a33c04c16f80e924b9b78d8035c 100644 --- a/method_inputs/a2/EMP_YRI/r00000003/n32/meta.json +++ b/method_inputs/a2/EMP_YRI/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 176698, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "c6fd52d3a99a041c099bef9edb57186be2ae394ca3e52b7f8e5ba65c4932d026", "canonical_id": "55ef6ad4e995be51692ede8fd4a789e0f2ce2052e36fd06f33195baac70d3673:00000003", @@ -50,7 +50,7 @@ "view.bcf": "52c6c619cca7d1fe7be2d991e4a8d1c8ab8d9e8391fc4a6abc10cad885a5efb8", "view.bcf.csi": "7ba5af74510846a41183e417589335ebebfe131ed555be4e2acf4f9b9fb37843" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "0805ad12031c1b82b5470db02553f94e8110f9c5b3a7795214f27b151bdfac9a", "ladder_columns": [ 35, diff --git a/method_inputs/a2/EMP_YRI/r00000004/n32/meta.json b/method_inputs/a2/EMP_YRI/r00000004/n32/meta.json index 42b0189be76ab65350a39e751a14bb92ab1dac41..b6583ba0a39bd1130a399918a2edd14a0dc82619 100644 --- a/method_inputs/a2/EMP_YRI/r00000004/n32/meta.json +++ b/method_inputs/a2/EMP_YRI/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 182930, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "c6fd52d3a99a041c099bef9edb57186be2ae394ca3e52b7f8e5ba65c4932d026", "canonical_id": "55ef6ad4e995be51692ede8fd4a789e0f2ce2052e36fd06f33195baac70d3673:00000004", @@ -50,7 +50,7 @@ "view.bcf": "dc26b4ed2d5e1f24394d4301293de8cacf32318fc17fa27ca6d0c225cf0e8e68", "view.bcf.csi": "40136f834d476fb3f19e27851ba1dafd9cddf170dc12c435859d03281b670570" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "b6df8bf1c450c0993af371af73538e80acc314a890217b511843b571cbab66da", "ladder_columns": [ 22, diff --git a/method_inputs/a2/EMP_YRI/r00000005/n32/meta.json b/method_inputs/a2/EMP_YRI/r00000005/n32/meta.json index 9091310b524858f0216c13c87e65de9c8b304486..aebcb9eb16651343df4d30be2448697237a363f1 100644 --- a/method_inputs/a2/EMP_YRI/r00000005/n32/meta.json +++ b/method_inputs/a2/EMP_YRI/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 175046, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "c6fd52d3a99a041c099bef9edb57186be2ae394ca3e52b7f8e5ba65c4932d026", "canonical_id": "55ef6ad4e995be51692ede8fd4a789e0f2ce2052e36fd06f33195baac70d3673:00000005", @@ -50,7 +50,7 @@ "view.bcf": "f35e3d9b2ff6289d4db1bdaa52c893bcdf929dfd8962365eb712bd711ae23cee", "view.bcf.csi": "b3889130e897ca8aa261bbcad96c26adfe365a5e4132f7ff779e0ba33301f356" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "b6df8bf1c450c0993af371af73538e80acc314a890217b511843b571cbab66da", "ladder_columns": [ 8, diff --git a/method_inputs/a2/EMP_YRI/r00000006/n32/meta.json b/method_inputs/a2/EMP_YRI/r00000006/n32/meta.json index 346a78859477976693f69abf5316399207551628..7db5490df76167c57855a482ae66db648052accb 100644 --- a/method_inputs/a2/EMP_YRI/r00000006/n32/meta.json +++ b/method_inputs/a2/EMP_YRI/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 177735, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "c6fd52d3a99a041c099bef9edb57186be2ae394ca3e52b7f8e5ba65c4932d026", "canonical_id": "55ef6ad4e995be51692ede8fd4a789e0f2ce2052e36fd06f33195baac70d3673:00000006", @@ -50,7 +50,7 @@ "view.bcf": "378b924b189d39c5a8811a74cd6e3e55e04f944b3f8763039b9ed8d516241b73", "view.bcf.csi": "6829f0fed68d1ad5f7b0c31567ee9f4c468d9971402ac08894c1eb606b575262" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "b6df8bf1c450c0993af371af73538e80acc314a890217b511843b571cbab66da", "ladder_columns": [ 60, diff --git a/method_inputs/a2/EMP_YRI/r00000007/n32/meta.json b/method_inputs/a2/EMP_YRI/r00000007/n32/meta.json index 167fd92819be522ceff0cc24ec10f7c8617b3e4e..c8f2e94bb2496b015d33f0e04c66d8c07b4e3bf1 100644 --- a/method_inputs/a2/EMP_YRI/r00000007/n32/meta.json +++ b/method_inputs/a2/EMP_YRI/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 176877, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_EMP_YRI/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "c6fd52d3a99a041c099bef9edb57186be2ae394ca3e52b7f8e5ba65c4932d026", "canonical_id": "55ef6ad4e995be51692ede8fd4a789e0f2ce2052e36fd06f33195baac70d3673:00000007", @@ -50,7 +50,7 @@ "view.bcf": "cc2ca8d72a7a21dac8ed7d6203a92014cd363de24d655dd359d4aea9989d8634", "view.bcf.csi": "3883588d161a1517313c840e78fa2b879a2b3675a537adb814d9b0f9f56023bc" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "b6df8bf1c450c0993af371af73538e80acc314a890217b511843b571cbab66da", "ladder_columns": [ 31, diff --git a/method_inputs/a2/EMP_YRI/receipts/export_51969932.json b/method_inputs/a2/EMP_YRI/receipts/export_51969932.json index 7dd4aba3081f6c94eb041ba37f12761afee57070..ee4dfa4c97693925a075ff8afab28f76fb143b68 100644 --- a/method_inputs/a2/EMP_YRI/receipts/export_51969932.json +++ b/method_inputs/a2/EMP_YRI/receipts/export_51969932.json @@ -1,25 +1,25 @@ { "arm": "CLEAN_NOISE", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a2_EMP_YRI", "host": "cn604-15", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_YRI/receipts/identity_scan_51969932.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_YRI/receipts/identity_scan_51969932.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "c229331b80433d275496b66764e4f7a87a117caf53e7a8ff2f3591563f7fd7c7" + "sha256": "10935898b41cda2e6b52f72e7446d664c4e865c007dd947a053de85dc4718258" }, "job": "51969932", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_YRI/receipts/open_audit_51969932.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_YRI/receipts/open_audit_51969932.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c6fd52d3a99a041c099bef9edb57186be2ae394ca3e52b7f8e5ba65c4932d026", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_YRI/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_YRI/r00000000/n32", "files": { "multihetsep.txt": "5224fd50beab28a0e87f9e202204ee5d5b4816d566d6238e618e952645eb2d2c", "phlash_contig.npz": "bd3a5b12d22b3bf3feddadaae47e1d08e86f01abc7f8350f889566e5fce55947", @@ -54,7 +54,7 @@ "view.bcf": "067a05d2c0620eda1c0275ac261f8fd721cc852baca821822371d47028e71f76", "view.bcf.csi": "f6c9b2d78a70f6570ea7b47e59f75279399caa4343d60ffe6d54640436149265" }, - "meta_sha256": "657c7d91ab1f191dae3ac73c61d08286230a7c8a8937c3eae1a115c2c39e6ed1", + "meta_sha256": "c535cc616c24ea22ca66b43a6f6fc2c26737fd16d592d6942501266bd4c46288", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c6fd52d3a99a041c099bef9edb57186be2ae394ca3e52b7f8e5ba65c4932d026", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_YRI/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_YRI/r00000001/n32", "files": { "multihetsep.txt": "46f9ab0fbb1717f7ab78da808e9226b6ccd6bc2c490ab31cfbb5b23082da49b6", "phlash_contig.npz": "daf5827c71622960b8a554ff546dc39a89038bebbdc526153d5ecb5b0d1567a5", @@ -93,7 +93,7 @@ "view.bcf": "4ceaf3108157702e31b789dca24887a1f213a316450bc0a32451f0b5630701ad", "view.bcf.csi": "c12dc85818bc04ed9bda6442b4c78cfecc45e23c5683460f376cf66d7cdef929" }, - "meta_sha256": "1fe676de590ddfd5915d61b2e60d30cb4dc1a655d676d6a4617d3558cc50dcce", + "meta_sha256": "d58c314d30e7dadb32001e3d9d80cc07c09c77738efbddf2cdb3428b326240b1", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c6fd52d3a99a041c099bef9edb57186be2ae394ca3e52b7f8e5ba65c4932d026", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_YRI/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_YRI/r00000002/n32", "files": { "multihetsep.txt": "4c1273113b4ae0f2d2641320e542fb2dcf1a4cd6d1af78d981c8cdc761d901fa", "phlash_contig.npz": "a17a5e89cfeafb6c8f2273d979b02a1c05d875d0f4a72bb05eebfd1c32f460e1", @@ -132,7 +132,7 @@ "view.bcf": "2ecd22421e53b89781a4115676ba8cb733c9e44383a9a5c2d397ba382c8ce39c", "view.bcf.csi": "960af4dd488d5ca4f594e3a0770accd3253370cf7a9f550ba2a7a14f9223a3f5" }, - "meta_sha256": "649d8724abc333a3fd84f66131dd0f43b0654bfbcb0c9f1cb1c10da98fa192f9", + "meta_sha256": "4bd5e3d6cc2c098b022d712998c0ff432b2c8e55375fc2d81535e0ef82dc7150", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c6fd52d3a99a041c099bef9edb57186be2ae394ca3e52b7f8e5ba65c4932d026", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_YRI/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_YRI/r00000003/n32", "files": { "multihetsep.txt": "f5ee569e9c18accd4e3de54c50f67082729535ec6f0cec70dc42acc412d14e18", "phlash_contig.npz": "750d9c1ec090e23bd6b1a622898b0e94ee3d4ffac5e2a00cd08ad2268fbfc499", @@ -171,7 +171,7 @@ "view.bcf": "52c6c619cca7d1fe7be2d991e4a8d1c8ab8d9e8391fc4a6abc10cad885a5efb8", "view.bcf.csi": "7ba5af74510846a41183e417589335ebebfe131ed555be4e2acf4f9b9fb37843" }, - "meta_sha256": "01b89b1e1f810d5954a4674be09f3480ba15bf68d2cc5ef57ee7cab49ff94423", + "meta_sha256": "9d264af0540b85cae47542e1ee4ec701fae5aa77ffde56f3b54db61675ecef21", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c6fd52d3a99a041c099bef9edb57186be2ae394ca3e52b7f8e5ba65c4932d026", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_YRI/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_YRI/r00000004/n32", "files": { "multihetsep.txt": "9b6b50fcd55e12e6a02592218e6ce66ec6a5ec5dc06010b13a37b7d4f6f19fd6", "phlash_contig.npz": "e4d3e317f4e76c5bb1fbc27237deadfc0440c3c550f09a9f3ae272723773da07", @@ -210,7 +210,7 @@ "view.bcf": "dc26b4ed2d5e1f24394d4301293de8cacf32318fc17fa27ca6d0c225cf0e8e68", "view.bcf.csi": "40136f834d476fb3f19e27851ba1dafd9cddf170dc12c435859d03281b670570" }, - "meta_sha256": "7df8ad3001652ec5f67a2bad94e2fd45b4cd6ca64499c7663312e67d1e73c46a", + "meta_sha256": "a0707c2a37b38bb59a2397b683a7248279129df8a15a808e3499413a92764361", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c6fd52d3a99a041c099bef9edb57186be2ae394ca3e52b7f8e5ba65c4932d026", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_YRI/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_YRI/r00000005/n32", "files": { "multihetsep.txt": "5ff51eda3716bcb51ae682c59b8cf37f8b6a5a3a74f05c40f43b539ecbbeeebb", "phlash_contig.npz": "c70ce7287705f92fec81bd7a4d0417820712cf77f34574584b88c5912e35f0ac", @@ -249,7 +249,7 @@ "view.bcf": "f35e3d9b2ff6289d4db1bdaa52c893bcdf929dfd8962365eb712bd711ae23cee", "view.bcf.csi": "b3889130e897ca8aa261bbcad96c26adfe365a5e4132f7ff779e0ba33301f356" }, - "meta_sha256": "9f0c6a2f43772946ad32bb829439dc70b5eee125416ef8fc6ab529cb341189b3", + "meta_sha256": "cb750955079fb580cc1fcdfe5cf930d29d9d46f1d42dd70d7f13e6079c039cad", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c6fd52d3a99a041c099bef9edb57186be2ae394ca3e52b7f8e5ba65c4932d026", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_YRI/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_YRI/r00000006/n32", "files": { "multihetsep.txt": "ab43279dfa919ae255b2ee4755d6599ef634549babd605ea9f6f8b6612232502", "phlash_contig.npz": "d53beebbdcac10fa8287128d43a4a1a49faf83aaea2c64aaf38c7f545acc94bc", @@ -288,7 +288,7 @@ "view.bcf": "378b924b189d39c5a8811a74cd6e3e55e04f944b3f8763039b9ed8d516241b73", "view.bcf.csi": "6829f0fed68d1ad5f7b0c31567ee9f4c468d9971402ac08894c1eb606b575262" }, - "meta_sha256": "a307d8ae13889b8aea495cc705af9a6dc4f53a5123236b33fa860a499022d41b", + "meta_sha256": "ab4843888c218eeb1943a8b0bb92d350c307c760224aebae07b0e22025c634b4", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "c6fd52d3a99a041c099bef9edb57186be2ae394ca3e52b7f8e5ba65c4932d026", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_YRI/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_YRI/r00000007/n32", "files": { "multihetsep.txt": "eef717d531f2da67be0d6db03140f0a54771b4b0a6b0afcdba929313d5a13476", "phlash_contig.npz": "418ef8b3dea8f01ddcd21993ded2474b8623aa4cb6ca795912c4b4c6e00a64b3", @@ -327,7 +327,7 @@ "view.bcf": "cc2ca8d72a7a21dac8ed7d6203a92014cd363de24d655dd359d4aea9989d8634", "view.bcf.csi": "3883588d161a1517313c840e78fa2b879a2b3675a537adb814d9b0f9f56023bc" }, - "meta_sha256": "6d19ce37c85c62c52a7a71b8a1551d64e36ec98bd5fd6f1d5850ae771e222d4f", + "meta_sha256": "d06369f86ea72d4d3c6fbfd23615e0fb3dceccd2536907688e37c93393ff9ac4", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, diff --git a/method_inputs/a2/EMP_YRI/receipts/identity_scan_51969932.json b/method_inputs/a2/EMP_YRI/receipts/identity_scan_51969932.json index dbd86a334803c827362898992d0e60094d52b498..33b4801a176b97f9633cd8682fe7ed6428f0e40b 100644 --- a/method_inputs/a2/EMP_YRI/receipts/identity_scan_51969932.json +++ b/method_inputs/a2/EMP_YRI/receipts/identity_scan_51969932.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "55ef6ad4e995be51692ede8fd4a789e0f2ce2052e36fd06f33195baac70d3673" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T17:24:49Z" diff --git a/method_inputs/a2/EMP_YRI/receipts/open_audit_51969932.json b/method_inputs/a2/EMP_YRI/receipts/open_audit_51969932.json index 822a2179e6b0d06c192b1ca7dc3c12f3ebaea370..572488ae72815d1f616693ccb26189bc87330e29 100644 --- a/method_inputs/a2/EMP_YRI/receipts/open_audit_51969932.json +++ b/method_inputs/a2/EMP_YRI/receipts/open_audit_51969932.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_YRI/receipts/identity_scan_51969932.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_YRI/receipts/identity_scan_51969932.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_EMP_YRI/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_EMP_YRI/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a2_EMP_YRI/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_EMP_YRI/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a2_EMP_YRI/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "r", - 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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_EMP_YRI/receipts/export_51969932.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_EMP_YRI/receipts/export_51969932.json" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/events.log" + "path": "$WORK/bench_h2h_20260915/events.log" } ], "purposes": [ diff --git a/method_inputs/a2/GROW_X100_300/r00000000/n32/meta.json b/method_inputs/a2/GROW_X100_300/r00000000/n32/meta.json index 9b4c32f59a57f5c30f7864dfa19e76866793483b..3e9e1cc3c5f750ee07d339bc12c0653719341577 100644 --- a/method_inputs/a2/GROW_X100_300/r00000000/n32/meta.json +++ b/method_inputs/a2/GROW_X100_300/r00000000/n32/meta.json @@ -2,7 +2,7 @@ "S": 84891, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "86dee7c2acbf19ceffd0bc204845b36e11bf482b07da18e908fb57d4fbafbf88", "canonical_id": "684546ed33a539f02e28faaf05c30e7e5eb51bcf22a15e1b133128da7c432f21:00000000", @@ -50,7 +50,7 @@ "view.bcf": "868799749e19a0569b8e574329ed9cffe09bf7ebbc1d6e2ce8dadd0c8d8fb34f", "view.bcf.csi": "0db9388d7b8b57c8b7143e6ce0ff6a84442b8718980fdca7816abb42900ff8ea" }, - 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"fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_GROW_X100_300/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_GROW_X100_300/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "bf247afa67beafad8514d6f1fb052911fc8986151f0ee7b4b5ae224b45bbbdce", "ladder_columns": [ 23, diff --git a/method_inputs/a2/GROW_X100_300/r00000003/n32/meta.json b/method_inputs/a2/GROW_X100_300/r00000003/n32/meta.json index 4e89acbb0a2c7b4dffda3970e1dcc83adce4a88c..15a4f613b45fc1c0d789f5e8799a21ad8094b0a9 100644 --- a/method_inputs/a2/GROW_X100_300/r00000003/n32/meta.json +++ b/method_inputs/a2/GROW_X100_300/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 77835, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "86dee7c2acbf19ceffd0bc204845b36e11bf482b07da18e908fb57d4fbafbf88", "canonical_id": "684546ed33a539f02e28faaf05c30e7e5eb51bcf22a15e1b133128da7c432f21:00000003", @@ -50,7 +50,7 @@ "view.bcf": "ec22b0b135d66e76a1272d160340ade1e87157d0505c6a381dd1914fba96629a", "view.bcf.csi": "2131480d3ab384127a3199ce01d3401ea6e2e6c5605faaa8e41bca807600d99f" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_GROW_X100_300/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_GROW_X100_300/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "bf247afa67beafad8514d6f1fb052911fc8986151f0ee7b4b5ae224b45bbbdce", "ladder_columns": [ 35, diff --git a/method_inputs/a2/GROW_X100_300/r00000004/n32/meta.json b/method_inputs/a2/GROW_X100_300/r00000004/n32/meta.json index 315c5adb1b37407cff492e5c2313509cb358bdc6..e5a4e0afc9d17a5a74acf29d52e9b0b023b196a0 100644 --- a/method_inputs/a2/GROW_X100_300/r00000004/n32/meta.json +++ b/method_inputs/a2/GROW_X100_300/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 79902, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "86dee7c2acbf19ceffd0bc204845b36e11bf482b07da18e908fb57d4fbafbf88", "canonical_id": "684546ed33a539f02e28faaf05c30e7e5eb51bcf22a15e1b133128da7c432f21:00000004", @@ -50,7 +50,7 @@ "view.bcf": "6b6be48358606fee343e3b5115c8bb3592b39b1ca74de2d520ab7cd8e5fa234d", "view.bcf.csi": "cdfbb6d0efaa56cf18646385ad659045ddac553f854de1a93f7489530a68d41c" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_GROW_X100_300/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_GROW_X100_300/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "387654ae542cc7f3acc26072383033329e7b07adfbf8c16c6789a41748fc37e0", "ladder_columns": [ 22, diff --git a/method_inputs/a2/GROW_X100_300/r00000005/n32/meta.json b/method_inputs/a2/GROW_X100_300/r00000005/n32/meta.json index 01daf7c55ab98b50ab768732b4fdc024ba24d83b..38c0017d6abaff7755c18fd5ad143470f355b716 100644 --- a/method_inputs/a2/GROW_X100_300/r00000005/n32/meta.json +++ b/method_inputs/a2/GROW_X100_300/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 82986, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "86dee7c2acbf19ceffd0bc204845b36e11bf482b07da18e908fb57d4fbafbf88", "canonical_id": "684546ed33a539f02e28faaf05c30e7e5eb51bcf22a15e1b133128da7c432f21:00000005", @@ -50,7 +50,7 @@ "view.bcf": "68e508695392e14654f80312750312553b4dd939d76705bcce4c238c836c749d", "view.bcf.csi": "0941ecd2a868a7efdef48cb52b9a4ce1e23519b8dfc8df1c90105d670015c323" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_GROW_X100_300/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_GROW_X100_300/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "387654ae542cc7f3acc26072383033329e7b07adfbf8c16c6789a41748fc37e0", "ladder_columns": [ 8, diff --git a/method_inputs/a2/GROW_X100_300/r00000006/n32/meta.json b/method_inputs/a2/GROW_X100_300/r00000006/n32/meta.json index 475a121d46af315bb5f0fc5960d1035dc8b17df6..ab14893c29fa45390f9588b158cf2f1c7578a579 100644 --- a/method_inputs/a2/GROW_X100_300/r00000006/n32/meta.json +++ b/method_inputs/a2/GROW_X100_300/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 79169, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "86dee7c2acbf19ceffd0bc204845b36e11bf482b07da18e908fb57d4fbafbf88", "canonical_id": "684546ed33a539f02e28faaf05c30e7e5eb51bcf22a15e1b133128da7c432f21:00000006", @@ -50,7 +50,7 @@ "view.bcf": "16c0f2042fc5f0cb01b9a1618b9be2d822e1c88a5e25459f16738a0e0baa7056", "view.bcf.csi": "6d9e09997e38cf514a9e0bd4611e02c52ead00d5168bbc860909d87c7d52a882" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_GROW_X100_300/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_GROW_X100_300/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "387654ae542cc7f3acc26072383033329e7b07adfbf8c16c6789a41748fc37e0", "ladder_columns": [ 60, diff --git a/method_inputs/a2/GROW_X100_300/r00000007/n32/meta.json b/method_inputs/a2/GROW_X100_300/r00000007/n32/meta.json index fa5256259e303cf9b6917fe8d91d6d33c75760b6..ba0287138100d44b8750333b425608741525eaa8 100644 --- a/method_inputs/a2/GROW_X100_300/r00000007/n32/meta.json +++ b/method_inputs/a2/GROW_X100_300/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 78138, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_GROW_X100_300/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "86dee7c2acbf19ceffd0bc204845b36e11bf482b07da18e908fb57d4fbafbf88", "canonical_id": "684546ed33a539f02e28faaf05c30e7e5eb51bcf22a15e1b133128da7c432f21:00000007", @@ -50,7 +50,7 @@ "view.bcf": "643929636c99c4112ccf1cd2ee81be05a284acb009d2180be0c6eb8e358fb919", "view.bcf.csi": "1de39a7f7d91192b0e5ec63f381767ae2f52728fafed0d4d2ecbe1d6e860c876" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_GROW_X100_300/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_GROW_X100_300/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "387654ae542cc7f3acc26072383033329e7b07adfbf8c16c6789a41748fc37e0", "ladder_columns": [ 31, diff --git a/method_inputs/a2/GROW_X100_300/receipts/export_51970157.json b/method_inputs/a2/GROW_X100_300/receipts/export_51970157.json index 7a32aaa61f3bafff9feabbaa0eec8bec737782f5..0342b4ee5cc128eab4940eff554594abdf397128 100644 --- a/method_inputs/a2/GROW_X100_300/receipts/export_51970157.json +++ b/method_inputs/a2/GROW_X100_300/receipts/export_51970157.json @@ -1,25 +1,25 @@ { "arm": "CLEAN_NOISE", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a2_GROW_X100_300", "host": "cn604-13", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_GROW_X100_300/receipts/identity_scan_51970157.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a2_GROW_X100_300/receipts/identity_scan_51970157.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "cff4b68ad92945831610a979b33e1f0d8337c823ff506d871ac8a9d40c696678" + "sha256": "39beb58b225ca61882c9c40f8f78e49b4eea0323711d2c8f9270b710c7341790" }, "job": "51970157", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_GROW_X100_300/receipts/open_audit_51970157.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a2_GROW_X100_300/receipts/open_audit_51970157.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "86dee7c2acbf19ceffd0bc204845b36e11bf482b07da18e908fb57d4fbafbf88", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_GROW_X100_300/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_GROW_X100_300/r00000000/n32", "files": { "multihetsep.txt": "994fd649c8af976e2ccace10087c1a839e255f46d7481d8369d008255e8babef", "phlash_contig.npz": "ae1ff5e628d8a9941ff3cd2f3dc6ea784ad8248f12492831fea6237318f8f941", @@ -54,7 +54,7 @@ "view.bcf": "868799749e19a0569b8e574329ed9cffe09bf7ebbc1d6e2ce8dadd0c8d8fb34f", "view.bcf.csi": "0db9388d7b8b57c8b7143e6ce0ff6a84442b8718980fdca7816abb42900ff8ea" }, - "meta_sha256": "f3662c85706dcde6d28a3b3ded72b222a2fa546de8c70db55739d9c6d82cd867", + "meta_sha256": "be314f1e19f1aecf8cdf0b0da922194b8943045df899be8019478d518b078662", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "86dee7c2acbf19ceffd0bc204845b36e11bf482b07da18e908fb57d4fbafbf88", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_GROW_X100_300/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_GROW_X100_300/r00000001/n32", "files": { "multihetsep.txt": "600f0d09c871ada687ffa45755aa01127c8d584a5fafec5f514b8ff92cc6a119", "phlash_contig.npz": "e29e47f46a54f4db611d2b895df27ddb8ca17cd6fbd90210ab746c2ac51fc2f9", @@ -93,7 +93,7 @@ "view.bcf": "5c0289d93de2d03fe0f9b3fc829cf0e49f984196bfe3827394c8dc87318de785", "view.bcf.csi": "e504d94ab8cf29c910aaf34cd8ac93ff60020e94591a1633437532831de5f782" }, - "meta_sha256": "831f4707fde41684c69a977362de6eb909028e910ea802cbd86d02ca4920a7ea", + "meta_sha256": "e24566e5dc289a257403eb6332bea9b7b2ae2d0724ea8369e80cfd6130a1ff4c", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "86dee7c2acbf19ceffd0bc204845b36e11bf482b07da18e908fb57d4fbafbf88", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_GROW_X100_300/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_GROW_X100_300/r00000002/n32", "files": { "multihetsep.txt": "cb4948f8ce038ee26e6bcf4dbcc70a12c8081742e8546dd03419738c958d1251", "phlash_contig.npz": "c606f72939e6d7860cd386dab7331bd27222d0013ff615d1fb0b511e36ec659f", @@ -132,7 +132,7 @@ "view.bcf": "b3d41bae1f307cec2651e10b3620df721267529a616a3c360e214ef54a7e9b5e", "view.bcf.csi": "01e57906ab9ecd5835ed170af19ef379e19e901e7388a26628a75ae67b2290cb" }, - "meta_sha256": "88bc01cd4934d535e37b5f763cfd577553eca4c84c1864fca45a0f219b60ede1", + "meta_sha256": "fec87ec80f8417a80833ba98cbc9a9331b52d04954d629fed6ce612400ccb02c", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "86dee7c2acbf19ceffd0bc204845b36e11bf482b07da18e908fb57d4fbafbf88", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_GROW_X100_300/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_GROW_X100_300/r00000003/n32", "files": { "multihetsep.txt": "8b565ffcdbdef99f5af42d80ddcfc1b55803cb00ce957684cf0d1ebe066b2408", "phlash_contig.npz": "adefd4877a02e6fc67fa2535ffe746787728202df486881144973bcb49ac5707", @@ -171,7 +171,7 @@ "view.bcf": "ec22b0b135d66e76a1272d160340ade1e87157d0505c6a381dd1914fba96629a", "view.bcf.csi": "2131480d3ab384127a3199ce01d3401ea6e2e6c5605faaa8e41bca807600d99f" }, - "meta_sha256": "e8d274a527b6a2814a18fcb23a3bbea7dd125182afae0265f3d59cb1836d202a", + "meta_sha256": "12eac470f969c438eede9280baa9d1278efd44983f1af136c222b1cbbc411def", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "86dee7c2acbf19ceffd0bc204845b36e11bf482b07da18e908fb57d4fbafbf88", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_GROW_X100_300/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_GROW_X100_300/r00000004/n32", "files": { "multihetsep.txt": "2b68838284b27c9c59fac6fd43ab71480c5d3040a67a9c9b41dbdb6e17b56f5b", "phlash_contig.npz": "7913d43201bbe691f6a080138b390d1d9373189d625a4d7a7fdbf3e31d1e897a", @@ -210,7 +210,7 @@ "view.bcf": "6b6be48358606fee343e3b5115c8bb3592b39b1ca74de2d520ab7cd8e5fa234d", "view.bcf.csi": "cdfbb6d0efaa56cf18646385ad659045ddac553f854de1a93f7489530a68d41c" }, - "meta_sha256": "efebe41f6165b44178a75f01ba29d8e4bec865f1118e1da3f86578c5466067e1", + "meta_sha256": "8c65f3241fb99e314f56d52f5b1d4a181ca6f5bed0f057a5d9dc2664f1286aed", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "86dee7c2acbf19ceffd0bc204845b36e11bf482b07da18e908fb57d4fbafbf88", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_GROW_X100_300/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_GROW_X100_300/r00000005/n32", "files": { "multihetsep.txt": "b1bc1b7c760f286cc5b73ef9f3df308d5045ee94a20c22f8b056ecaec8fba2af", "phlash_contig.npz": "5641d0d9a9ad0f1ee60632845ecdb7af9b1ce466b1ff0d33b6a5de7c5bfc3ccb", @@ -249,7 +249,7 @@ "view.bcf": "68e508695392e14654f80312750312553b4dd939d76705bcce4c238c836c749d", "view.bcf.csi": "0941ecd2a868a7efdef48cb52b9a4ce1e23519b8dfc8df1c90105d670015c323" }, - "meta_sha256": "6bfea739fc954096c07d8122b885a86bc7ab511ba401897fc9a6b680ba56958d", + "meta_sha256": "ff196b9e4d6a1ae927d118c92b28e31d6711fc7d64ddc54bb9d7ed38d93cd727", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "86dee7c2acbf19ceffd0bc204845b36e11bf482b07da18e908fb57d4fbafbf88", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_GROW_X100_300/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_GROW_X100_300/r00000006/n32", "files": { "multihetsep.txt": "a74c63dc21e4bc70544d1e1713572c78f9a0b9bdd0d5338d1c97c932cbc0b801", "phlash_contig.npz": "9fd84aa8f5eba76ed42fad8d68e96961a381243f0278533c93a0d4abc12a09d1", @@ -288,7 +288,7 @@ "view.bcf": "16c0f2042fc5f0cb01b9a1618b9be2d822e1c88a5e25459f16738a0e0baa7056", "view.bcf.csi": "6d9e09997e38cf514a9e0bd4611e02c52ead00d5168bbc860909d87c7d52a882" }, - "meta_sha256": "e886c41dfc69c41e5320347856a91ee1aff8e1e0f579bca6b1770e40f4fe1636", + "meta_sha256": "58ad51553bdf6d1a7373af751c36f52702ecb66e62e2066c1ff60a62305b3c48", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "86dee7c2acbf19ceffd0bc204845b36e11bf482b07da18e908fb57d4fbafbf88", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_GROW_X100_300/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_GROW_X100_300/r00000007/n32", "files": { "multihetsep.txt": "7a2a1836b4b1d84ce357498ab92ce74419a2bb3f81f1dc46bd0692612acfad73", "phlash_contig.npz": "b76ee0ed63f40226c6899666efd3adf3f645e6eae99c0f23d60e492129bc11e8", @@ -327,7 +327,7 @@ "view.bcf": "643929636c99c4112ccf1cd2ee81be05a284acb009d2180be0c6eb8e358fb919", "view.bcf.csi": "1de39a7f7d91192b0e5ec63f381767ae2f52728fafed0d4d2ecbe1d6e860c876" }, - "meta_sha256": "07a2627495838034fce59338549fe952406c08e3ec34f5e353f45089c215907f", + "meta_sha256": "d0f1c22ca1bb441a06d34746f30680c59ac22b1167fca63bb431cbef10e3b28f", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, diff --git a/method_inputs/a2/GROW_X100_300/receipts/identity_scan_51970157.json b/method_inputs/a2/GROW_X100_300/receipts/identity_scan_51970157.json index bf71913ab49ea927b95e5a03319615f837daa7fa..42f7242739272b45dfe6bf09a3f29f8d90cb2119 100644 --- a/method_inputs/a2/GROW_X100_300/receipts/identity_scan_51970157.json +++ b/method_inputs/a2/GROW_X100_300/receipts/identity_scan_51970157.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "684546ed33a539f02e28faaf05c30e7e5eb51bcf22a15e1b133128da7c432f21" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T17:24:58Z" diff --git a/method_inputs/a2/GROW_X100_300/receipts/open_audit_51970157.json b/method_inputs/a2/GROW_X100_300/receipts/open_audit_51970157.json index e7340e439d1abd7707115db27b2ac5a2b459ff4f..6af3e63e4a7907eb6da3443fe227b47b729e3798 100644 --- a/method_inputs/a2/GROW_X100_300/receipts/open_audit_51970157.json +++ b/method_inputs/a2/GROW_X100_300/receipts/open_audit_51970157.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_GROW_X100_300/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_GROW_X100_300/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_GROW_X100_300/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_GROW_X100_300/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_GROW_X100_300/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_GROW_X100_300/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_GROW_X100_300/receipts/identity_scan_51970157.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_GROW_X100_300/receipts/identity_scan_51970157.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_GROW_X100_300/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_GROW_X100_300/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_GROW_X100_300/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_GROW_X100_300/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - 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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_GROW_X100_300/r00000007/v0_n32.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_GROW_X100_300/r00000007/v0_n32.json" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_GROW_X100_300/receipts/export_51970157.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_GROW_X100_300/receipts/export_51970157.json" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/events.log" + "path": "$WORK/bench_h2h_20260915/events.log" } ], "purposes": [ diff --git a/method_inputs/a2/OOA_EUR/r00000000/n32/meta.json b/method_inputs/a2/OOA_EUR/r00000000/n32/meta.json index 921e07752212e149dd6ada852465ce615fe6292b..5438963bd1ebe622d85b2b7e27e1867065e76014 100644 --- a/method_inputs/a2/OOA_EUR/r00000000/n32/meta.json +++ b/method_inputs/a2/OOA_EUR/r00000000/n32/meta.json @@ -2,7 +2,7 @@ "S": 30985, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "14ff4a4290f8953bf9d79f75d3f75efafad59618a3def98065bcb8d4f3e75f56", "canonical_id": "aae38e17b0c4fd90df562d5b360dd5dfda4118480dd0adeaf5be2f5f98de1203:00000000", @@ -50,7 +50,7 @@ "view.bcf": "bf47b4a4245372dc323cedabee4e08f0fec68538b4f39f5f498310c5b53e561e", "view.bcf.csi": "3908986622e9cb250aa1c588cd0edd44cbf06eb3816bbd50d52d345cbc5e7a5a" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "b13090d1fe44fc467cc56c76c9803d4106b4d7c18ea9fcb6762ca1a359ea9e47", "ladder_columns": [ 39, diff --git a/method_inputs/a2/OOA_EUR/r00000001/n32/meta.json b/method_inputs/a2/OOA_EUR/r00000001/n32/meta.json index 738f70e683582185cde5064ef0b7551443e46214..739879bea4245a43ed93deeff6c27fc87cd45229 100644 --- a/method_inputs/a2/OOA_EUR/r00000001/n32/meta.json +++ b/method_inputs/a2/OOA_EUR/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 30742, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "14ff4a4290f8953bf9d79f75d3f75efafad59618a3def98065bcb8d4f3e75f56", "canonical_id": "aae38e17b0c4fd90df562d5b360dd5dfda4118480dd0adeaf5be2f5f98de1203:00000001", @@ -50,7 +50,7 @@ "view.bcf": "32c37fb7f3d5915e77152de2d5efd555a5274519b1fc4dd1c9d487e0721526b1", "view.bcf.csi": "fdec585f2dedc08e7706c81460c4d395da1c805e248ca1d2db491add4ec24c0b" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "b13090d1fe44fc467cc56c76c9803d4106b4d7c18ea9fcb6762ca1a359ea9e47", "ladder_columns": [ 16, diff --git a/method_inputs/a2/OOA_EUR/r00000002/n32/meta.json b/method_inputs/a2/OOA_EUR/r00000002/n32/meta.json index 4223db99cbd9ab35e9d6c5f7b80ffaf663d3ded7..f8a47e348c2231f5062f4e581153b2c7b7fb0a68 100644 --- a/method_inputs/a2/OOA_EUR/r00000002/n32/meta.json +++ b/method_inputs/a2/OOA_EUR/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 31398, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "14ff4a4290f8953bf9d79f75d3f75efafad59618a3def98065bcb8d4f3e75f56", "canonical_id": "aae38e17b0c4fd90df562d5b360dd5dfda4118480dd0adeaf5be2f5f98de1203:00000002", @@ -50,7 +50,7 @@ "view.bcf": "88f5cf5d282fd42468a3469e38d0cee3e5caf345af13d00cea6f23ea12338ebe", "view.bcf.csi": "11bd3e1b74a19fc76b9ac98906922289f41593653e0279d2dda77ee06cf32f1e" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "b13090d1fe44fc467cc56c76c9803d4106b4d7c18ea9fcb6762ca1a359ea9e47", "ladder_columns": [ 23, diff --git a/method_inputs/a2/OOA_EUR/r00000003/n32/meta.json b/method_inputs/a2/OOA_EUR/r00000003/n32/meta.json index ce7f4b1760bfa6a21234f5ef38a9f4f867decded..bec6baf867d4aae66a1a03f86ebfb064188f70f6 100644 --- a/method_inputs/a2/OOA_EUR/r00000003/n32/meta.json +++ b/method_inputs/a2/OOA_EUR/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 31256, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "14ff4a4290f8953bf9d79f75d3f75efafad59618a3def98065bcb8d4f3e75f56", "canonical_id": "aae38e17b0c4fd90df562d5b360dd5dfda4118480dd0adeaf5be2f5f98de1203:00000003", @@ -50,7 +50,7 @@ "view.bcf": "35506c3a1454136452e7420cd7a302fd9e7a0c68998f8d9787ca045609b0cd3d", "view.bcf.csi": "b4b2c8f40b3a02db0b0590c9a5ba6c6cb308b4a6e7944806753bc797e3c52c97" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "b13090d1fe44fc467cc56c76c9803d4106b4d7c18ea9fcb6762ca1a359ea9e47", "ladder_columns": [ 35, diff --git a/method_inputs/a2/OOA_EUR/r00000004/n32/meta.json b/method_inputs/a2/OOA_EUR/r00000004/n32/meta.json index db4ce280da968964e3715c3f5ad10bbbf71fc083..5b2f3355dab7885b71a278b60b7d082311bacd01 100644 --- a/method_inputs/a2/OOA_EUR/r00000004/n32/meta.json +++ b/method_inputs/a2/OOA_EUR/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 33333, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "14ff4a4290f8953bf9d79f75d3f75efafad59618a3def98065bcb8d4f3e75f56", "canonical_id": "aae38e17b0c4fd90df562d5b360dd5dfda4118480dd0adeaf5be2f5f98de1203:00000004", @@ -50,7 +50,7 @@ "view.bcf": "c392c7d7be7e63c3af261c0788a7a837f8b561bcbba21226503c90c2de096fa3", "view.bcf.csi": "0dda498128714a8b9904e493e726cc451717e00d4449968d40e02d74be12b75a" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "3a46c533cd8d3be07c35237ee6e4638ddf553610ee5c234d39c1c375942319d9", "ladder_columns": [ 22, diff --git a/method_inputs/a2/OOA_EUR/r00000005/n32/meta.json b/method_inputs/a2/OOA_EUR/r00000005/n32/meta.json index f9b02dd90c9f7495b48f2995937257f5b74d74dd..f8593606a61c330d083368de0b8624c5f941e824 100644 --- a/method_inputs/a2/OOA_EUR/r00000005/n32/meta.json +++ b/method_inputs/a2/OOA_EUR/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 36441, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "14ff4a4290f8953bf9d79f75d3f75efafad59618a3def98065bcb8d4f3e75f56", "canonical_id": "aae38e17b0c4fd90df562d5b360dd5dfda4118480dd0adeaf5be2f5f98de1203:00000005", @@ -50,7 +50,7 @@ "view.bcf": "e8cfb843747c5e7e20f8ea04f998dde9337d9f3053d0d21bb946f8a2aea2ebd1", "view.bcf.csi": "b8e409c665cbf5e01a7edff2e4afc1d0965a79965ae6401d4907bc744f648408" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "3a46c533cd8d3be07c35237ee6e4638ddf553610ee5c234d39c1c375942319d9", "ladder_columns": [ 8, diff --git a/method_inputs/a2/OOA_EUR/r00000006/n32/meta.json b/method_inputs/a2/OOA_EUR/r00000006/n32/meta.json index c8f29e3bf01dac42d971726fa282a9ebd37f878f..931c89d4c20d6034cfc40a527dcb70457e4c7334 100644 --- a/method_inputs/a2/OOA_EUR/r00000006/n32/meta.json +++ b/method_inputs/a2/OOA_EUR/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 36748, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "14ff4a4290f8953bf9d79f75d3f75efafad59618a3def98065bcb8d4f3e75f56", "canonical_id": "aae38e17b0c4fd90df562d5b360dd5dfda4118480dd0adeaf5be2f5f98de1203:00000006", @@ -50,7 +50,7 @@ "view.bcf": "b14b9fd44ef94e5a41816c71cf2da3efc6f5d0deda74f1c8cae321507f090dbb", "view.bcf.csi": "cea3412ec4d2050d7fadaf03742eecceb61d6963e37604c9833fd2758d980e05" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "3a46c533cd8d3be07c35237ee6e4638ddf553610ee5c234d39c1c375942319d9", "ladder_columns": [ 60, diff --git a/method_inputs/a2/OOA_EUR/r00000007/n32/meta.json b/method_inputs/a2/OOA_EUR/r00000007/n32/meta.json index 9d32a62c8ecf1805cafb6819b0814605ed9e248a..8fcc97d15952dc997b043909cd54adef00eba20c 100644 --- a/method_inputs/a2/OOA_EUR/r00000007/n32/meta.json +++ b/method_inputs/a2/OOA_EUR/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 34785, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_OOA_EUR/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "14ff4a4290f8953bf9d79f75d3f75efafad59618a3def98065bcb8d4f3e75f56", "canonical_id": "aae38e17b0c4fd90df562d5b360dd5dfda4118480dd0adeaf5be2f5f98de1203:00000007", @@ -50,7 +50,7 @@ "view.bcf": "0d36e44efe48210579148594d0f5eae0d81601eac1e8630dc1ec5812ff1a5472", "view.bcf.csi": "f1f4b6335e3b9b6ba1275eb1420fe8ba43ae71ff164a24376498e9f37916e72a" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "3a46c533cd8d3be07c35237ee6e4638ddf553610ee5c234d39c1c375942319d9", "ladder_columns": [ 31, diff --git a/method_inputs/a2/OOA_EUR/receipts/export_51970155.json b/method_inputs/a2/OOA_EUR/receipts/export_51970155.json index 4e6ca71d388135d9fea974586e9eb471d33b85b1..718452f33c33e3f153902193dff6054cbee4cbac 100644 --- a/method_inputs/a2/OOA_EUR/receipts/export_51970155.json +++ b/method_inputs/a2/OOA_EUR/receipts/export_51970155.json @@ -1,25 +1,25 @@ { "arm": "CLEAN_NOISE", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a2_OOA_EUR", "host": "cn604-14", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_OOA_EUR/receipts/identity_scan_51970155.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a2_OOA_EUR/receipts/identity_scan_51970155.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "c9f828b5d00345d3337ba9e1fd89803478fd9871e3d7087c24d23dede8decaf8" + "sha256": "36ef4eddae44d695b76b12234a6e118b3ded0110f564806473ef859c364a2446" }, "job": "51970155", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_OOA_EUR/receipts/open_audit_51970155.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a2_OOA_EUR/receipts/open_audit_51970155.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "14ff4a4290f8953bf9d79f75d3f75efafad59618a3def98065bcb8d4f3e75f56", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_OOA_EUR/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_OOA_EUR/r00000000/n32", "files": { "multihetsep.txt": "18661c413028af6b27a80651d58e991f2b0687afc8daea0042445b80fa8bb8fe", "phlash_contig.npz": "30f159046492b1016476b88b5263cac7ee5a849d6ae03e4c98801756b38037a8", @@ -54,7 +54,7 @@ "view.bcf": "bf47b4a4245372dc323cedabee4e08f0fec68538b4f39f5f498310c5b53e561e", "view.bcf.csi": "3908986622e9cb250aa1c588cd0edd44cbf06eb3816bbd50d52d345cbc5e7a5a" }, - "meta_sha256": "d1079feb41f33c015c84ed81773e5640469251d0012e24ed83b4897309d87371", + "meta_sha256": "6c1f9a58cac41b372a36edc9de6c3afc23e55f69b6f078a0e58a95748261d0ab", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "14ff4a4290f8953bf9d79f75d3f75efafad59618a3def98065bcb8d4f3e75f56", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_OOA_EUR/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_OOA_EUR/r00000001/n32", "files": { "multihetsep.txt": "72e581788c233cdd256db098a305b7ac783d5e378f21a65b523af38b1f77e449", "phlash_contig.npz": "dc4af322355f35955982712e4cacb544e2bec68402cef3c9940ea9d6c8414f8d", @@ -93,7 +93,7 @@ "view.bcf": "32c37fb7f3d5915e77152de2d5efd555a5274519b1fc4dd1c9d487e0721526b1", "view.bcf.csi": "fdec585f2dedc08e7706c81460c4d395da1c805e248ca1d2db491add4ec24c0b" }, - "meta_sha256": "a64b3adf1a6381ba3d0130d018ef09ad198af1f5dd9b66afd334c24ed478c491", + "meta_sha256": "0351af536651733452932a5bcc906419de9f7fa3528e2a3476f04c4d63367e9c", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "14ff4a4290f8953bf9d79f75d3f75efafad59618a3def98065bcb8d4f3e75f56", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_OOA_EUR/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_OOA_EUR/r00000002/n32", "files": { "multihetsep.txt": "e81f11770aec1d941ff50db58690e49ae05809882a7aeff37388ef03c335f0ef", "phlash_contig.npz": "957a94ee17abd4082c7bc9c7a312a055bd4d887e1207ac2dd24546da04600a9c", @@ -132,7 +132,7 @@ "view.bcf": "88f5cf5d282fd42468a3469e38d0cee3e5caf345af13d00cea6f23ea12338ebe", "view.bcf.csi": "11bd3e1b74a19fc76b9ac98906922289f41593653e0279d2dda77ee06cf32f1e" }, - "meta_sha256": "acdc8104f32b6cc60eddf2cee942062c70d7f2769d9ce1d2fed19b599b6b0f2a", + "meta_sha256": "30b9f2f571d1bc083454f6cb3c82668c971424fca16f218b4844af01eb5e773e", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "14ff4a4290f8953bf9d79f75d3f75efafad59618a3def98065bcb8d4f3e75f56", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_OOA_EUR/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_OOA_EUR/r00000003/n32", "files": { "multihetsep.txt": "5abfdf218c4b99244ac0febecd37d799c938c86a307cc4c2ec01893438d38556", "phlash_contig.npz": "68c8987bb7277cc2ba3fbefc3e207299ca04641f23e0a405f688e79dd9e8bf27", @@ -171,7 +171,7 @@ "view.bcf": "35506c3a1454136452e7420cd7a302fd9e7a0c68998f8d9787ca045609b0cd3d", "view.bcf.csi": "b4b2c8f40b3a02db0b0590c9a5ba6c6cb308b4a6e7944806753bc797e3c52c97" }, - "meta_sha256": "ed4a7c34d8368dc615aa4e332de9524d27d99747384fcaa22d6fea909f6da382", + "meta_sha256": "614fd27a8a1daad6b3cb2e7f75be7dd02e76d4d8874b6f22530d7480c355783d", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "14ff4a4290f8953bf9d79f75d3f75efafad59618a3def98065bcb8d4f3e75f56", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_OOA_EUR/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_OOA_EUR/r00000004/n32", "files": { "multihetsep.txt": "982e7b687a2da397faf362ea95ff533d8bce5bcdca3619e43fad022e6ac1fae7", "phlash_contig.npz": "22e4cc0dc30175d634ad4e372a54bead962f014c0058bc19f6ddf138efdd101d", @@ -210,7 +210,7 @@ "view.bcf": "c392c7d7be7e63c3af261c0788a7a837f8b561bcbba21226503c90c2de096fa3", "view.bcf.csi": "0dda498128714a8b9904e493e726cc451717e00d4449968d40e02d74be12b75a" }, - "meta_sha256": "a042956bd4677b81e7f7563723346a7fff4a5d86086ac97d7f0727a2febe3ba5", + "meta_sha256": "930bb9d7e05bbb2b94095c88247f84ffa58ebbfdf7563c7fd11888466ce67347", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "14ff4a4290f8953bf9d79f75d3f75efafad59618a3def98065bcb8d4f3e75f56", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_OOA_EUR/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_OOA_EUR/r00000005/n32", "files": { "multihetsep.txt": "f78ff4b6e644a9c67e0be32cb577036eae775b01d80b293af219b645ea2750fb", "phlash_contig.npz": "2b084e5215ca2b19cf30da71a106e36704a43673bb8b61fe47ac308ced668b05", @@ -249,7 +249,7 @@ "view.bcf": "e8cfb843747c5e7e20f8ea04f998dde9337d9f3053d0d21bb946f8a2aea2ebd1", "view.bcf.csi": "b8e409c665cbf5e01a7edff2e4afc1d0965a79965ae6401d4907bc744f648408" }, - "meta_sha256": "a43852eb11d17c43af59233227734a50891b6bb229214dcf3f52f38ef2466f93", + "meta_sha256": "69757e6ddcf32e57be400ee8e8cdee3c082375a34cfda88e3cfcd18d844caf0b", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "14ff4a4290f8953bf9d79f75d3f75efafad59618a3def98065bcb8d4f3e75f56", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_OOA_EUR/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_OOA_EUR/r00000006/n32", "files": { "multihetsep.txt": "1714c9bda1cfd2f8a07acafff2bfeeacf37688f26b27802fa33b2677916c2520", "phlash_contig.npz": "6483fe1b1b0901f370faa412f2374b4e075cfcdd5b99cf0f70f3c66032d2b75d", @@ -288,7 +288,7 @@ "view.bcf": "b14b9fd44ef94e5a41816c71cf2da3efc6f5d0deda74f1c8cae321507f090dbb", "view.bcf.csi": "cea3412ec4d2050d7fadaf03742eecceb61d6963e37604c9833fd2758d980e05" }, - "meta_sha256": "b6741485c4b3c82bc35968b5cfc2311d09d0d1b3efc50cbdabf140432977d43c", + "meta_sha256": "3bfc7b9e1d492351ef0b0e6f4689ffdb7f833551307825d0232551d244a81c0f", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "14ff4a4290f8953bf9d79f75d3f75efafad59618a3def98065bcb8d4f3e75f56", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_OOA_EUR/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_OOA_EUR/r00000007/n32", "files": { "multihetsep.txt": "176360687df252376d5f464b8d28a6927adf9e5774911c41dc51d74d9a3b973d", "phlash_contig.npz": "417b30dad2a3792ee9dcf1be43f92d261da0cbf64f71b0ac2f48a2dd3d042fac", @@ -327,7 +327,7 @@ "view.bcf": "0d36e44efe48210579148594d0f5eae0d81601eac1e8630dc1ec5812ff1a5472", "view.bcf.csi": "f1f4b6335e3b9b6ba1275eb1420fe8ba43ae71ff164a24376498e9f37916e72a" }, - "meta_sha256": "3044b44fc99a38a8bb6ea7777cda33cc6c8126440c944ad5edfcc50bf1908dce", + "meta_sha256": "b7e40a7422bf62c1e8959aa826f75eee6f0acb4fa30282e9a46f81e3d60055f4", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, diff --git a/method_inputs/a2/OOA_EUR/receipts/identity_scan_51970155.json b/method_inputs/a2/OOA_EUR/receipts/identity_scan_51970155.json index eb5bfa21478e4522497c8eb892e0083c93b5dd0d..07c49eabaed60adbe8fcd99a7b56d496b8c923ce 100644 --- a/method_inputs/a2/OOA_EUR/receipts/identity_scan_51970155.json +++ b/method_inputs/a2/OOA_EUR/receipts/identity_scan_51970155.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "aae38e17b0c4fd90df562d5b360dd5dfda4118480dd0adeaf5be2f5f98de1203" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T17:24:57Z" diff --git a/method_inputs/a2/OOA_EUR/receipts/open_audit_51970155.json b/method_inputs/a2/OOA_EUR/receipts/open_audit_51970155.json index 6b9b111262807224daac83123a212bf0792a4237..ca46ac9cbd153a5b593e4cb7ce3c2956b5171a23 100644 --- a/method_inputs/a2/OOA_EUR/receipts/open_audit_51970155.json +++ b/method_inputs/a2/OOA_EUR/receipts/open_audit_51970155.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_OOA_EUR/receipts/identity_scan_51970155.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_OOA_EUR/receipts/identity_scan_51970155.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_OOA_EUR/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_OOA_EUR/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a2_OOA_EUR/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_OOA_EUR/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a2_OOA_EUR/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_OOA_EUR/chain0_level32/unphased_evidence_cache.npz" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a2_OOA_EUR/chain0_level32/unphased_evidence_cache.npz" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_OOA_EUR/r00000000/.n32.tmp-iiz258_e/view.vcf" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_OOA_EUR/r00000000/.n32.tmp-iiz258_e/view.vcf" }, { "mode": "w", - 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"cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "2d22010f822553de08a8f65614f89f69fdc8bf24d8934c3205bd3adfd3ac3b2d", "canonical_id": "d40caa2d469b5e1a1209934be2253d35e597be2f2a4f4b868133b628c43d65b9:00000000", @@ -50,7 +50,7 @@ "view.bcf": "509b3dbb03c3b96dc6aac48fe440bf81e350cee933096c45aa8d36f4712c0a9d", "view.bcf.csi": "09c3578b5c43fcc450f56cf4d2d9f62237ac145ad149be6ab7beff82287bca4a" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "5375e2dd9273eb8b70031f69917608171220a2c3f270ca7c74a30aa00d0d4aca", "ladder_columns": [ 39, diff --git a/method_inputs/a2/STEP_DOWN_X10_20K/r00000001/n32/meta.json b/method_inputs/a2/STEP_DOWN_X10_20K/r00000001/n32/meta.json index 04b83d9425929d50e19cd69caa3014754b2de27a..44ba324f18f49484c8b1dbb9a77bc117fc628757 100644 --- a/method_inputs/a2/STEP_DOWN_X10_20K/r00000001/n32/meta.json +++ b/method_inputs/a2/STEP_DOWN_X10_20K/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 67623, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "2d22010f822553de08a8f65614f89f69fdc8bf24d8934c3205bd3adfd3ac3b2d", "canonical_id": "d40caa2d469b5e1a1209934be2253d35e597be2f2a4f4b868133b628c43d65b9:00000001", @@ -50,7 +50,7 @@ "view.bcf": "f1ac351191ee7548580e60050f967780adcc6702009545526355d6afe2370bff", "view.bcf.csi": "fc3578e83c4b4643ac46dfec9273f0b94ffb18272223e31b4c15c29f4dc446c1" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "5375e2dd9273eb8b70031f69917608171220a2c3f270ca7c74a30aa00d0d4aca", "ladder_columns": [ 16, diff --git a/method_inputs/a2/STEP_DOWN_X10_20K/r00000002/n32/meta.json b/method_inputs/a2/STEP_DOWN_X10_20K/r00000002/n32/meta.json index fc69f915cb760534e05970501ce5ae1225307370..09f60486ed4b5f68ffdfe67ee119f2e10a11274d 100644 --- a/method_inputs/a2/STEP_DOWN_X10_20K/r00000002/n32/meta.json +++ b/method_inputs/a2/STEP_DOWN_X10_20K/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 62504, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "2d22010f822553de08a8f65614f89f69fdc8bf24d8934c3205bd3adfd3ac3b2d", "canonical_id": "d40caa2d469b5e1a1209934be2253d35e597be2f2a4f4b868133b628c43d65b9:00000002", @@ -50,7 +50,7 @@ "view.bcf": "7042d696e112d16767ec43c4665f9e8630c93860619dc22364ff5e045b401122", "view.bcf.csi": "166b04e344b814dcbadf512fc60ebbb3bf34810ebedb1f238f27c4125ce707f6" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "5375e2dd9273eb8b70031f69917608171220a2c3f270ca7c74a30aa00d0d4aca", "ladder_columns": [ 23, diff --git a/method_inputs/a2/STEP_DOWN_X10_20K/r00000003/n32/meta.json b/method_inputs/a2/STEP_DOWN_X10_20K/r00000003/n32/meta.json index a6b54b44e5e0bddbde8b6c1d9219be0e509f2eb5..55f686f74403d25aa365e63affee6e45206aace7 100644 --- a/method_inputs/a2/STEP_DOWN_X10_20K/r00000003/n32/meta.json +++ b/method_inputs/a2/STEP_DOWN_X10_20K/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 64450, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "2d22010f822553de08a8f65614f89f69fdc8bf24d8934c3205bd3adfd3ac3b2d", "canonical_id": "d40caa2d469b5e1a1209934be2253d35e597be2f2a4f4b868133b628c43d65b9:00000003", @@ -50,7 +50,7 @@ "view.bcf": "d3949e66a2e4b3b41094f7e01ded0ada1c007879496f5f15462b29cda769b4f9", "view.bcf.csi": "ee81782b26793ec666e229e016ea9e283f3614dfe1d6401763ef209e59b503f2" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "5375e2dd9273eb8b70031f69917608171220a2c3f270ca7c74a30aa00d0d4aca", "ladder_columns": [ 35, diff --git a/method_inputs/a2/STEP_DOWN_X10_20K/r00000004/n32/meta.json b/method_inputs/a2/STEP_DOWN_X10_20K/r00000004/n32/meta.json index d61430508ed94ca69c76c685a36b5ded2ba95609..c104bf862b83c035706b37309471e7b915937de0 100644 --- a/method_inputs/a2/STEP_DOWN_X10_20K/r00000004/n32/meta.json +++ b/method_inputs/a2/STEP_DOWN_X10_20K/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 69585, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "2d22010f822553de08a8f65614f89f69fdc8bf24d8934c3205bd3adfd3ac3b2d", "canonical_id": "d40caa2d469b5e1a1209934be2253d35e597be2f2a4f4b868133b628c43d65b9:00000004", @@ -50,7 +50,7 @@ "view.bcf": "f19905bc99e8c544d7838b366e9e4892fbc2d7c3e924cd1e74b18e40466c9123", "view.bcf.csi": "b2174d2152ec52608fb5ed8a5e58fcec865a56e1ea3e4bf822ddf7a46b3e01b2" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "f9d66cb258fdd5ddadc27396ffe05ce07b56840ab91460beec7cf1496cef78bf", "ladder_columns": [ 22, diff --git a/method_inputs/a2/STEP_DOWN_X10_20K/r00000005/n32/meta.json b/method_inputs/a2/STEP_DOWN_X10_20K/r00000005/n32/meta.json index ccaf8486a60bdf2dabeb20395dc3f0f3c4af7dea..440b0800b04c9774ab3c0b549427de9b92d7b539 100644 --- a/method_inputs/a2/STEP_DOWN_X10_20K/r00000005/n32/meta.json +++ b/method_inputs/a2/STEP_DOWN_X10_20K/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 61615, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "2d22010f822553de08a8f65614f89f69fdc8bf24d8934c3205bd3adfd3ac3b2d", "canonical_id": "d40caa2d469b5e1a1209934be2253d35e597be2f2a4f4b868133b628c43d65b9:00000005", @@ -50,7 +50,7 @@ "view.bcf": "ef28a8bf7a2543abae2323c51c0567eda836745aac2dcb15a174a8c5d7e47b0a", "view.bcf.csi": "c1a4179e9f84f3f8f8b3f8a58aa3c18ba8a8c710421edc04cb15cc5950b184c2" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "f9d66cb258fdd5ddadc27396ffe05ce07b56840ab91460beec7cf1496cef78bf", "ladder_columns": [ 8, diff --git a/method_inputs/a2/STEP_DOWN_X10_20K/r00000006/n32/meta.json b/method_inputs/a2/STEP_DOWN_X10_20K/r00000006/n32/meta.json index e4a80ad53129e86ff349f91e67461f18b3f8aead..73dd360945f339103524e7db96638202fb0d0260 100644 --- a/method_inputs/a2/STEP_DOWN_X10_20K/r00000006/n32/meta.json +++ b/method_inputs/a2/STEP_DOWN_X10_20K/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 67041, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "2d22010f822553de08a8f65614f89f69fdc8bf24d8934c3205bd3adfd3ac3b2d", "canonical_id": "d40caa2d469b5e1a1209934be2253d35e597be2f2a4f4b868133b628c43d65b9:00000006", @@ -50,7 +50,7 @@ "view.bcf": "21391ca988713abbad54a4a69659d3782b17777b55e91e8f776483eadf277944", "view.bcf.csi": "ba3f43f2d6b2c54d7f3aca9800220de854439e873435c89463dc08ff67d552d6" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "f9d66cb258fdd5ddadc27396ffe05ce07b56840ab91460beec7cf1496cef78bf", "ladder_columns": [ 60, diff --git a/method_inputs/a2/STEP_DOWN_X10_20K/r00000007/n32/meta.json b/method_inputs/a2/STEP_DOWN_X10_20K/r00000007/n32/meta.json index f62bfea4562b9b66e14cfa4a17947804932dc649..e5b3ffc9fd817a34751c76dee5d909e3e497038b 100644 --- a/method_inputs/a2/STEP_DOWN_X10_20K/r00000007/n32/meta.json +++ b/method_inputs/a2/STEP_DOWN_X10_20K/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 61976, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_STEP_DOWN_X10_20K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "2d22010f822553de08a8f65614f89f69fdc8bf24d8934c3205bd3adfd3ac3b2d", "canonical_id": "d40caa2d469b5e1a1209934be2253d35e597be2f2a4f4b868133b628c43d65b9:00000007", @@ -50,7 +50,7 @@ "view.bcf": "ee4a2b0fdcad75604362031c80acbece83ba6b1ac4ca588ee58854ef966c4227", "view.bcf.csi": "57bcb1ae80207ad77abffbc30e8efae62eed03b08f7d931e9138767989d47589" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "f9d66cb258fdd5ddadc27396ffe05ce07b56840ab91460beec7cf1496cef78bf", "ladder_columns": [ 31, diff --git a/method_inputs/a2/STEP_DOWN_X10_20K/receipts/export_51970202.json b/method_inputs/a2/STEP_DOWN_X10_20K/receipts/export_51970202.json index 26e9804010dc592059f59b5ee6484eeb588a2957..c525f460200f85af642f934e784c169dc7b2e4f8 100644 --- a/method_inputs/a2/STEP_DOWN_X10_20K/receipts/export_51970202.json +++ b/method_inputs/a2/STEP_DOWN_X10_20K/receipts/export_51970202.json @@ -1,25 +1,25 @@ { "arm": "CLEAN_NOISE", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a2_STEP_DOWN_X10_20K", "host": "cn604-14", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/receipts/identity_scan_51970202.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/receipts/identity_scan_51970202.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "d56ce8deba7b3b616623b64cba5f15e8aeb0f6acf22e650d3b203243e7ddaa36" + "sha256": "a1e74155128d8a083ab04d084ac64e120077b85d1a8e310003ab3771d935cde1" }, "job": "51970202", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/receipts/open_audit_51970202.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/receipts/open_audit_51970202.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "2d22010f822553de08a8f65614f89f69fdc8bf24d8934c3205bd3adfd3ac3b2d", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/r00000000/n32", "files": { "multihetsep.txt": "6f651ab4ceddf7dc99f3a31720ce9431db55af5948a4eefcf468f52a3b7327a9", "phlash_contig.npz": "6c8d25de364e53205f88cd5cec0e6d9f25d83c4fe2f3caaf00a3e07ed8ecad49", @@ -54,7 +54,7 @@ "view.bcf": "509b3dbb03c3b96dc6aac48fe440bf81e350cee933096c45aa8d36f4712c0a9d", "view.bcf.csi": "09c3578b5c43fcc450f56cf4d2d9f62237ac145ad149be6ab7beff82287bca4a" }, - "meta_sha256": "26166711abb020c003d29ab196b0255cfb46f4453ee8f954e0cf33f17dd1d914", + "meta_sha256": "bc5006e4b57e4c544d15e2442c2b3110b63a58ec44845e7629f338bd2f11e93a", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "2d22010f822553de08a8f65614f89f69fdc8bf24d8934c3205bd3adfd3ac3b2d", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/r00000001/n32", "files": { "multihetsep.txt": "0d71bb9367c855a2c8d3b9d28b23ea7aac193aed090405ed62df0edf885f00e2", "phlash_contig.npz": "db5126563f778af93cd9cb7d729d3699a9ade64ee93bc8d3c9976fedc3a75834", @@ -93,7 +93,7 @@ "view.bcf": "f1ac351191ee7548580e60050f967780adcc6702009545526355d6afe2370bff", "view.bcf.csi": "fc3578e83c4b4643ac46dfec9273f0b94ffb18272223e31b4c15c29f4dc446c1" }, - "meta_sha256": "05239829875305eaab29f5df1483cf1d9e295e62006eba4c9678323844c0c023", + "meta_sha256": "f8bbb04b45ddf3b4b9d43bb471dae88b1cc3e6e028c739deef1e80c5a4f0619f", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "2d22010f822553de08a8f65614f89f69fdc8bf24d8934c3205bd3adfd3ac3b2d", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/r00000002/n32", "files": { "multihetsep.txt": "c50af374a8629ebadc46ba7fa01316fa71cdb021bcb7ec1527afd538d6cfd693", "phlash_contig.npz": "bff81e1b4b7531e38d4798e28dc31dd719e531ca57854162772624f93eec453c", @@ -132,7 +132,7 @@ "view.bcf": "7042d696e112d16767ec43c4665f9e8630c93860619dc22364ff5e045b401122", "view.bcf.csi": "166b04e344b814dcbadf512fc60ebbb3bf34810ebedb1f238f27c4125ce707f6" }, - "meta_sha256": "eab3042cc9dfc07786a1bdfdc142d70f56e226cdde2bf06039decf1a4924cab7", + "meta_sha256": "b6c2b1c631637f1f6706bc8d537752d089741ed9d3b8bcf617f360aaae5b5332", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "2d22010f822553de08a8f65614f89f69fdc8bf24d8934c3205bd3adfd3ac3b2d", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/r00000003/n32", "files": { "multihetsep.txt": "c57a2c118f985742147ef396a057306108a69302cc522e3dd6920c5e5ed67462", "phlash_contig.npz": "a35d0fc4c12c29fdeddf569ec843fb40b02ef75d04eb2188f38982a013c0314b", @@ -171,7 +171,7 @@ "view.bcf": "d3949e66a2e4b3b41094f7e01ded0ada1c007879496f5f15462b29cda769b4f9", "view.bcf.csi": "ee81782b26793ec666e229e016ea9e283f3614dfe1d6401763ef209e59b503f2" }, - "meta_sha256": "fa1e75ad75f007201cbc681aa8b8d8a618dd2a33746b8565f613a9282ba8ebfa", + "meta_sha256": "f25b85a7d8e7ed058970f9d2cefad87d67542154f72c8730b3bea23d793c062e", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "2d22010f822553de08a8f65614f89f69fdc8bf24d8934c3205bd3adfd3ac3b2d", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/r00000004/n32", "files": { "multihetsep.txt": "0c3c1c6c51a2f673ee0c43a2dda5af4a34391d82e9a6fccb0af0202cd42ae9a4", "phlash_contig.npz": "818693e56291650fe5ce20bee0b4b76bf27911102abaec6c37247ae592d99e5e", @@ -210,7 +210,7 @@ "view.bcf": "f19905bc99e8c544d7838b366e9e4892fbc2d7c3e924cd1e74b18e40466c9123", "view.bcf.csi": "b2174d2152ec52608fb5ed8a5e58fcec865a56e1ea3e4bf822ddf7a46b3e01b2" }, - "meta_sha256": "ef6d48cef73e6f20531800faefcd7878c06efc34acd86b5579b12613ad6a0c3d", + "meta_sha256": "c9a2c9ce288a2bb9229f01819d9f4905384c26cbc477a010ef20b74721dfc0c0", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "2d22010f822553de08a8f65614f89f69fdc8bf24d8934c3205bd3adfd3ac3b2d", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/r00000005/n32", "files": { "multihetsep.txt": "da5cd6373bbecb90ea838e133cefd421bd4ad366b0079ed1340cd8072219a35d", "phlash_contig.npz": "797ca11b333642e511dc6ac2e3d2ea143cab592ed3c7844633a7033092fb0740", @@ -249,7 +249,7 @@ "view.bcf": "ef28a8bf7a2543abae2323c51c0567eda836745aac2dcb15a174a8c5d7e47b0a", "view.bcf.csi": "c1a4179e9f84f3f8f8b3f8a58aa3c18ba8a8c710421edc04cb15cc5950b184c2" }, - "meta_sha256": "7c45c784218056d6c2bd1e1b662de8209c62f762bde6990a4c0ade3152908785", + "meta_sha256": "551f757c77cb98e1ebb4f7998da6ef0406f464508d42f7c1c054095ca9480c9e", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "2d22010f822553de08a8f65614f89f69fdc8bf24d8934c3205bd3adfd3ac3b2d", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/r00000006/n32", "files": { "multihetsep.txt": "f0286bb65551c478830cfd2066c6f36af9ea09318af1316146d3b50b18393806", "phlash_contig.npz": "9cc5bc939b8876c7b68f43cb4dc7e92bbe06b8409d3bb83df5b2c410310f6912", @@ -288,7 +288,7 @@ "view.bcf": "21391ca988713abbad54a4a69659d3782b17777b55e91e8f776483eadf277944", "view.bcf.csi": "ba3f43f2d6b2c54d7f3aca9800220de854439e873435c89463dc08ff67d552d6" }, - "meta_sha256": "9a6d6e95e024f483a91d0373c92f7fa5c76d701ebd8e5012de2d3d95202c9f66", + "meta_sha256": "d381c4bab673fd59583465a7307ce7ca00c2a21caa24a87fbd86665d0992cfa9", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "2d22010f822553de08a8f65614f89f69fdc8bf24d8934c3205bd3adfd3ac3b2d", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/r00000007/n32", "files": { "multihetsep.txt": "217e166e728cb1c811b69e5519194a2b20c5334cf0167d22f8919fe515021bba", "phlash_contig.npz": "c5bf2e8db170238323e8c3af65e18805a4c2851bd7c6ce424504569f37fb2a2b", @@ -327,7 +327,7 @@ "view.bcf": "ee4a2b0fdcad75604362031c80acbece83ba6b1ac4ca588ee58854ef966c4227", "view.bcf.csi": "57bcb1ae80207ad77abffbc30e8efae62eed03b08f7d931e9138767989d47589" }, - "meta_sha256": "3dce950e7c83d469b661e1e53ec12d7c68514a397d8ec78cb444c8f68f8fe290", + "meta_sha256": "ac78091f7afea81638dd64b2dacd797c903ea60281a886573a339564509f86f4", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, diff --git a/method_inputs/a2/STEP_DOWN_X10_20K/receipts/identity_scan_51970202.json b/method_inputs/a2/STEP_DOWN_X10_20K/receipts/identity_scan_51970202.json index c20059c1ac1490fbbad17bcd5d144f2e4f40cda8..6bfffff1869899c93fea49bcd3f456bfe636e4d4 100644 --- a/method_inputs/a2/STEP_DOWN_X10_20K/receipts/identity_scan_51970202.json +++ b/method_inputs/a2/STEP_DOWN_X10_20K/receipts/identity_scan_51970202.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "d40caa2d469b5e1a1209934be2253d35e597be2f2a4f4b868133b628c43d65b9" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T17:25:05Z" diff --git a/method_inputs/a2/STEP_DOWN_X10_20K/receipts/open_audit_51970202.json b/method_inputs/a2/STEP_DOWN_X10_20K/receipts/open_audit_51970202.json index 10d8181885462a129bbb1331e1a178700c1a676f..b97561f3c21ac400b98e2cbf87d8e5937ad0a070 100644 --- a/method_inputs/a2/STEP_DOWN_X10_20K/receipts/open_audit_51970202.json +++ b/method_inputs/a2/STEP_DOWN_X10_20K/receipts/open_audit_51970202.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/receipts/identity_scan_51970202.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/receipts/identity_scan_51970202.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_DOWN_X10_20K/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_STEP_DOWN_X10_20K/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a2_STEP_DOWN_X10_20K/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - 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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/r00000007/v0_n32.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/r00000007/v0_n32.json" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/receipts/export_51970202.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_DOWN_X10_20K/receipts/export_51970202.json" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/events.log" + "path": "$WORK/bench_h2h_20260915/events.log" } ], "purposes": [ diff --git a/method_inputs/a2/STEP_UP_X10_1K/r00000000/n32/meta.json b/method_inputs/a2/STEP_UP_X10_1K/r00000000/n32/meta.json index fdacc00bfae8fdb0e6849bf9409c3dd269cf2989..06c262401daeeec87c77e2c4995a0f633bcacddb 100644 --- a/method_inputs/a2/STEP_UP_X10_1K/r00000000/n32/meta.json +++ b/method_inputs/a2/STEP_UP_X10_1K/r00000000/n32/meta.json @@ -2,7 +2,7 @@ "S": 56157, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "44f7bf5ef02472947db97d03953ddd503d166c0d8d096327d4751248febbfce6", "canonical_id": "16a942f0d961889bcd9ace412f698d6a8c481fa01244dbcc75adf4c6dafe59aa:00000000", @@ -50,7 +50,7 @@ "view.bcf": "fc2fff85243a9b61ffe09e72638e3c67ddc52b7e41c9ebe6993264bc8faab3b5", "view.bcf.csi": "5bb4e1f64757cc2ce32a040a35a89ce0d48f5c946b9fa34cf859f5e9ff8d8719" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "cd032e453e774018aa611dcef615b334e8a92684fe431d8180150a84f4aa425c", "ladder_columns": [ 39, diff --git a/method_inputs/a2/STEP_UP_X10_1K/r00000001/n32/meta.json b/method_inputs/a2/STEP_UP_X10_1K/r00000001/n32/meta.json index f226040178f5c7b20001ba97ca459e835d1786a0..13bed3e57c73ecf84ab65fca72bd1af38a94d04c 100644 --- a/method_inputs/a2/STEP_UP_X10_1K/r00000001/n32/meta.json +++ b/method_inputs/a2/STEP_UP_X10_1K/r00000001/n32/meta.json @@ -2,7 +2,7 @@ "S": 60634, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 1, "cache_sha256": "44f7bf5ef02472947db97d03953ddd503d166c0d8d096327d4751248febbfce6", "canonical_id": "16a942f0d961889bcd9ace412f698d6a8c481fa01244dbcc75adf4c6dafe59aa:00000001", @@ -50,7 +50,7 @@ "view.bcf": "d12f142e4ae5d0a271d4806dbd3cb85d9c5b5a4e72c13cf2c524e3836a26c488", "view.bcf.csi": "13aca52a4ae4c9ffb6845b1e8ebd4306a6d693c02063032998e0588b77b9e593" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "cd032e453e774018aa611dcef615b334e8a92684fe431d8180150a84f4aa425c", "ladder_columns": [ 16, diff --git a/method_inputs/a2/STEP_UP_X10_1K/r00000002/n32/meta.json b/method_inputs/a2/STEP_UP_X10_1K/r00000002/n32/meta.json index c2f80c871e28ee04f7e592bd2a167651971774c0..4a2dac9ab4063188692f483f0a8cb66422d56d9c 100644 --- a/method_inputs/a2/STEP_UP_X10_1K/r00000002/n32/meta.json +++ b/method_inputs/a2/STEP_UP_X10_1K/r00000002/n32/meta.json @@ -2,7 +2,7 @@ "S": 64154, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 2, "cache_sha256": "44f7bf5ef02472947db97d03953ddd503d166c0d8d096327d4751248febbfce6", "canonical_id": "16a942f0d961889bcd9ace412f698d6a8c481fa01244dbcc75adf4c6dafe59aa:00000002", @@ -50,7 +50,7 @@ "view.bcf": "3db4746ccac0b8df16f898e91b87ef28f1179e45c7ca6250682829135061f920", "view.bcf.csi": "d88099400f0d9159a99ecd93251607fbce937f23f6ffc12b9600fde9e0d187c2" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "cd032e453e774018aa611dcef615b334e8a92684fe431d8180150a84f4aa425c", "ladder_columns": [ 23, diff --git a/method_inputs/a2/STEP_UP_X10_1K/r00000003/n32/meta.json b/method_inputs/a2/STEP_UP_X10_1K/r00000003/n32/meta.json index 49890d661f1847bb989dd7b80f118f9911f80561..a7c1a5303d789f1c989b7e11d27c88dcacdfe812 100644 --- a/method_inputs/a2/STEP_UP_X10_1K/r00000003/n32/meta.json +++ b/method_inputs/a2/STEP_UP_X10_1K/r00000003/n32/meta.json @@ -2,7 +2,7 @@ "S": 59883, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 3, "cache_sha256": "44f7bf5ef02472947db97d03953ddd503d166c0d8d096327d4751248febbfce6", "canonical_id": "16a942f0d961889bcd9ace412f698d6a8c481fa01244dbcc75adf4c6dafe59aa:00000003", @@ -50,7 +50,7 @@ "view.bcf": "b2adb15db359079e33c9a0e5a897cb36420e1dc25f350e0758bad0bd351e1c97", "view.bcf.csi": "610c33a5f6d993cd380441b5de315ddc5794e026b78fbea734ef9fe600df8981" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.npz", "fragment_sha256": "cd032e453e774018aa611dcef615b334e8a92684fe431d8180150a84f4aa425c", "ladder_columns": [ 35, diff --git a/method_inputs/a2/STEP_UP_X10_1K/r00000004/n32/meta.json b/method_inputs/a2/STEP_UP_X10_1K/r00000004/n32/meta.json index 399ce4821921457c57e271c991185688abe84c7e..3a39e6a5b4a5323a4aa6bc109f339fa9aac88746 100644 --- a/method_inputs/a2/STEP_UP_X10_1K/r00000004/n32/meta.json +++ b/method_inputs/a2/STEP_UP_X10_1K/r00000004/n32/meta.json @@ -2,7 +2,7 @@ "S": 57035, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 4, "cache_sha256": "44f7bf5ef02472947db97d03953ddd503d166c0d8d096327d4751248febbfce6", "canonical_id": "16a942f0d961889bcd9ace412f698d6a8c481fa01244dbcc75adf4c6dafe59aa:00000004", @@ -50,7 +50,7 @@ "view.bcf": "19e60a6c2d41e55176e3654d81991eaeaf05cc4dc6f20abc346e9e46af29f0d2", "view.bcf.csi": "9a8cfd9e684a8cbc26d8f1ca7c9a061fb1e4158d6c27f235e5d4ff6cda2da99d" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "765b1cad254b73378c04b18e67e9d86bcbc42732354016ed8c16959f249f1bca", "ladder_columns": [ 22, diff --git a/method_inputs/a2/STEP_UP_X10_1K/r00000005/n32/meta.json b/method_inputs/a2/STEP_UP_X10_1K/r00000005/n32/meta.json index 301e769be74f5f2017f62cb4322a75ec3e0feb93..969bed322e4701714e2d92c0e75fd5cd031d909c 100644 --- a/method_inputs/a2/STEP_UP_X10_1K/r00000005/n32/meta.json +++ b/method_inputs/a2/STEP_UP_X10_1K/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 58886, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "44f7bf5ef02472947db97d03953ddd503d166c0d8d096327d4751248febbfce6", "canonical_id": "16a942f0d961889bcd9ace412f698d6a8c481fa01244dbcc75adf4c6dafe59aa:00000005", @@ -50,7 +50,7 @@ "view.bcf": "bcb19d03e62195c813af496d7aa1ff66d71102fb29038134b5a2e14173deec10", "view.bcf.csi": "d1f6a99c5a3849d3c8b58eeb3d0362d3af24a3237b5094211abdf82ad8be1415" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "765b1cad254b73378c04b18e67e9d86bcbc42732354016ed8c16959f249f1bca", "ladder_columns": [ 8, diff --git a/method_inputs/a2/STEP_UP_X10_1K/r00000006/n32/meta.json b/method_inputs/a2/STEP_UP_X10_1K/r00000006/n32/meta.json index 3951434da6f5b0b7efab4bb10fe043e620ddfd61..f037ff5db7e7102c1812f8ca6536d5a0f0d5c853 100644 --- a/method_inputs/a2/STEP_UP_X10_1K/r00000006/n32/meta.json +++ b/method_inputs/a2/STEP_UP_X10_1K/r00000006/n32/meta.json @@ -2,7 +2,7 @@ "S": 66031, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 6, "cache_sha256": "44f7bf5ef02472947db97d03953ddd503d166c0d8d096327d4751248febbfce6", "canonical_id": "16a942f0d961889bcd9ace412f698d6a8c481fa01244dbcc75adf4c6dafe59aa:00000006", @@ -50,7 +50,7 @@ "view.bcf": "18900546ecdd8a1fc16a24d0c31259c28f415c772a4ddb7513a3e0d1f343c391", "view.bcf.csi": "39952c3401d0e6087f9ce619736477f46c3db6d3884db199fa19974022122325" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "765b1cad254b73378c04b18e67e9d86bcbc42732354016ed8c16959f249f1bca", "ladder_columns": [ 60, diff --git a/method_inputs/a2/STEP_UP_X10_1K/r00000007/n32/meta.json b/method_inputs/a2/STEP_UP_X10_1K/r00000007/n32/meta.json index 36e4beb46fdedc9648fd5a143ac6db94acb5d827..f3bcf39b9360045f88e14598aaed1c229e5e1991 100644 --- a/method_inputs/a2/STEP_UP_X10_1K/r00000007/n32/meta.json +++ b/method_inputs/a2/STEP_UP_X10_1K/r00000007/n32/meta.json @@ -2,7 +2,7 @@ "S": 58702, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_STEP_UP_X10_1K/chain0_level32/unphased_evidence_cache.npz", "cache_row": 7, "cache_sha256": "44f7bf5ef02472947db97d03953ddd503d166c0d8d096327d4751248febbfce6", "canonical_id": "16a942f0d961889bcd9ace412f698d6a8c481fa01244dbcc75adf4c6dafe59aa:00000007", @@ -50,7 +50,7 @@ "view.bcf": "56cf064f1457985af979379aced806a4b4d425767412212f9b8abc9731dbdf9b", "view.bcf.csi": "c52e4c8a8ac68d14b44efd76e1fde8b6ee08393d2a50eb67a8bf9aacea03dd5a" }, - "fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "765b1cad254b73378c04b18e67e9d86bcbc42732354016ed8c16959f249f1bca", "ladder_columns": [ 31, diff --git a/method_inputs/a2/STEP_UP_X10_1K/receipts/export_51970188.json b/method_inputs/a2/STEP_UP_X10_1K/receipts/export_51970188.json index 777ee5978834eda1d580147fcfd597cd8ef15ee9..cf923a8a4b0877768ca5390452c47f331397a83d 100644 --- a/method_inputs/a2/STEP_UP_X10_1K/receipts/export_51970188.json +++ b/method_inputs/a2/STEP_UP_X10_1K/receipts/export_51970188.json @@ -1,25 +1,25 @@ { "arm": "CLEAN_NOISE", - "bcftools": "/ibex/sw/rl9c/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", + "bcftools": "$SW/bcftools/1.16/rl9_gnu12.2.0/bin/bcftools", "dataset": "v2_a2_STEP_UP_X10_1K", "host": "cn511-03", "identity_scan": { "hits": 0, "lines_scanned": 104996, - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/receipts/identity_scan_51970188.json", - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "path": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/receipts/identity_scan_51970188.json", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, - "sha256": "ede4596f841aac9dd6b43257d1f61cbb90360e2fe68cc19596b0e5213a9de9c0" + "sha256": "f33bb7a9d1f17c83ea1b4c6d42f85ca1d8c48ddebad090548542dd42f144df8d" }, "job": "51970188", - "multihetsep_script": "/ibex/project/c2041/hany0c/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", + "multihetsep_script": "$WORK/bench_h2h_20260915/ext/phlash_paper_46ff1dc/scripts/multihetsep.sh", "n": [ 32 ], "open_audit": { - "log": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/receipts/open_audit_51970188.json", + "log": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/receipts/open_audit_51970188.json", "production_files_opened": [ - "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "$WORK/registry109k/raw_index.jsonl" ], "refused": 0 }, @@ -46,7 +46,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "44f7bf5ef02472947db97d03953ddd503d166c0d8d096327d4751248febbfce6", "contig": "region_0", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/r00000000/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/r00000000/n32", "files": { "multihetsep.txt": "db6d61421b5f64ce4bd790e2f4a4fd04eafa92a65f782d19208b36ce13b84587", "phlash_contig.npz": "c1b79d1f24c3ce5ac1c675d57c8fa2eaf1b9c10972bead9b69ea96a6a033f82a", @@ -54,7 +54,7 @@ "view.bcf": "fc2fff85243a9b61ffe09e72638e3c67ddc52b7e41c9ebe6993264bc8faab3b5", "view.bcf.csi": "5bb4e1f64757cc2ce32a040a35a89ce0d48f5c946b9fa34cf859f5e9ff8d8719" }, - "meta_sha256": "54e0e2957802339ab76c686b70f154201ae05128395deedb607bfb99cb8287ec", + "meta_sha256": "05194dee2b9f6029f6c6eb56a856754506657498512055208465da0b9bc8e10e", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -85,7 +85,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "44f7bf5ef02472947db97d03953ddd503d166c0d8d096327d4751248febbfce6", "contig": "region_1", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/r00000001/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/r00000001/n32", "files": { "multihetsep.txt": "258b31d89e4f95f0a0c8d338e7ebc4f023bcc6cb087089d0f4c0d64877b2d10d", "phlash_contig.npz": "83ab89990ec64b9f8449b916a524f1aa87e9c45e9e715ca5be4fba79b8713ded", @@ -93,7 +93,7 @@ "view.bcf": "d12f142e4ae5d0a271d4806dbd3cb85d9c5b5a4e72c13cf2c524e3836a26c488", "view.bcf.csi": "13aca52a4ae4c9ffb6845b1e8ebd4306a6d693c02063032998e0588b77b9e593" }, - "meta_sha256": "e26ec0bb2c6d5f324ab12187bfdaafb16d42bee6fdd38185d861c06bf26668e0", + "meta_sha256": "05c36f592fc8e1a796937126990073acb51b3d04d4dd0753674832b3c2168b7d", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -124,7 +124,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "44f7bf5ef02472947db97d03953ddd503d166c0d8d096327d4751248febbfce6", "contig": "region_2", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/r00000002/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/r00000002/n32", "files": { "multihetsep.txt": "23a4af4cb475a1e1a1aabfb43a8fb96aead80d978d1289d744ee8f2aa0745bd4", "phlash_contig.npz": "56860a7d5e43c991bfc19041b77833b77a569ba0eb480e9fed24785291dacc28", @@ -132,7 +132,7 @@ "view.bcf": "3db4746ccac0b8df16f898e91b87ef28f1179e45c7ca6250682829135061f920", "view.bcf.csi": "d88099400f0d9159a99ecd93251607fbce937f23f6ffc12b9600fde9e0d187c2" }, - "meta_sha256": "a3b31e8ab04acc6914a13c998f72c8d54ca5e20f34ac54076382a1f8ff64b3e8", + "meta_sha256": "6a3d18426643fa6eaf0fd85c79e57c68d1dce0944c7ac117b5f3256b7e47c5f0", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -163,7 +163,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "44f7bf5ef02472947db97d03953ddd503d166c0d8d096327d4751248febbfce6", "contig": "region_3", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/r00000003/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/r00000003/n32", "files": { "multihetsep.txt": "d3b2c692a9ca0f82af1b69ff33e19545674347df43c13fb45d91717a9e2fc76d", "phlash_contig.npz": "1fbd59634b549d0b1bdd5e8a38e7d72aa191808a17cb901cf712b8bc723cf288", @@ -171,7 +171,7 @@ "view.bcf": "b2adb15db359079e33c9a0e5a897cb36420e1dc25f350e0758bad0bd351e1c97", "view.bcf.csi": "610c33a5f6d993cd380441b5de315ddc5794e026b78fbea734ef9fe600df8981" }, - "meta_sha256": "be26d0e15711b5f9518d7a569a0e0fac3adc47e30300f5e4c48a94d9dafb369a", + "meta_sha256": "072b319d1f993380c7c36e2e90635d26d74b0aa728fbcee6713bf11095f79d54", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -202,7 +202,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "44f7bf5ef02472947db97d03953ddd503d166c0d8d096327d4751248febbfce6", "contig": "region_4", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/r00000004/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/r00000004/n32", "files": { "multihetsep.txt": "8adbcfdb4a6de1181f46c2a55e4b7ce7b241fbbdcb33dcee35e716536d18ec32", "phlash_contig.npz": "e859b95209429a823f2975efbaeb0def433d6209b0181395fb2d64da390cdd76", @@ -210,7 +210,7 @@ "view.bcf": "19e60a6c2d41e55176e3654d81991eaeaf05cc4dc6f20abc346e9e46af29f0d2", "view.bcf.csi": "9a8cfd9e684a8cbc26d8f1ca7c9a061fb1e4158d6c27f235e5d4ff6cda2da99d" }, - "meta_sha256": "536204b4d4b0e42a43e73c666a677df4abcc6e104aa0e8ef4cad462efbb1ca92", + "meta_sha256": "0442ee75d71e2865231e10816905c7e62e0abf4d4fc8667dcefadf63d05cea8e", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -241,7 +241,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "44f7bf5ef02472947db97d03953ddd503d166c0d8d096327d4751248febbfce6", "contig": "region_5", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/r00000005/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/r00000005/n32", "files": { "multihetsep.txt": "1ee05150cedbb9537a97f782a2e747ed70f0ca952bcfa469ee7c779c621adb20", "phlash_contig.npz": "cf6fa73b6aedb51facf0917d855ee2cf226f73d371011fc284a4d04b61fd1899", @@ -249,7 +249,7 @@ "view.bcf": "bcb19d03e62195c813af496d7aa1ff66d71102fb29038134b5a2e14173deec10", "view.bcf.csi": "d1f6a99c5a3849d3c8b58eeb3d0362d3af24a3237b5094211abdf82ad8be1415" }, - "meta_sha256": "3d4c46be6c1fc8550a61fc12c33263749a3155725e722bf86cad8ff365d4cfeb", + "meta_sha256": "abf8329642c756f591dc0bc47040b189fbbe87c72e89bb01a2390053d7f1e48f", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -280,7 +280,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "44f7bf5ef02472947db97d03953ddd503d166c0d8d096327d4751248febbfce6", "contig": "region_6", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/r00000006/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/r00000006/n32", "files": { "multihetsep.txt": "54a42a26eb886c7c59433bab785c3f1cef9f181a3f1298c061a2d1eb9a2fe51a", "phlash_contig.npz": "59e7a473a08f64ffc611e19dcc8c48ae92690d20d7de8e46c34b8b7a098dcf20", @@ -288,7 +288,7 @@ "view.bcf": "18900546ecdd8a1fc16a24d0c31259c28f415c772a4ddb7513a3e0d1f343c391", "view.bcf.csi": "39952c3401d0e6087f9ce619736477f46c3db6d3884db199fa19974022122325" }, - "meta_sha256": "f7825c105c35bfd26d9b26b53542c1120cfdd65cc57019eee8fc9ab1fbbb0c02", + "meta_sha256": "eb69b65c5270b438695fdeccb70b468b9674cc216fd0000305ff527ca9e24007", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, @@ -319,7 +319,7 @@ "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", "cache_sha256": "44f7bf5ef02472947db97d03953ddd503d166c0d8d096327d4751248febbfce6", "contig": "region_7", - "export_dir": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/r00000007/n32", + "export_dir": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/r00000007/n32", "files": { "multihetsep.txt": "567efcab5ee0af1a94ae96c9e6b432043a5123af223d60593b181e66bf3d1ceb", "phlash_contig.npz": "acc3bcbf3b0c5a72ba1835bdd9874a0646ffab5c0ab4359fc942479da2cc2029", @@ -327,7 +327,7 @@ "view.bcf": "56cf064f1457985af979379aced806a4b4d425767412212f9b8abc9731dbdf9b", "view.bcf.csi": "c52e4c8a8ac68d14b44efd76e1fde8b6ee08393d2a50eb67a8bf9aacea03dd5a" }, - "meta_sha256": "0fc337c06acc8c2b71e07d421ef8244e14ecc66711cd60bfcc8554cb7965efef", + "meta_sha256": "20f14221e1d5434e2746154fa503299eebaf66f187d1ee8e1b46c18e210c1819", "mu_for_tools": 1.2500000146076218e-08, "mu_source": "true constant (A1 CLEAN map under the A2 noise overlay; obs == true)", "n": 32, diff --git a/method_inputs/a2/STEP_UP_X10_1K/receipts/identity_scan_51970188.json b/method_inputs/a2/STEP_UP_X10_1K/receipts/identity_scan_51970188.json index d50b182335176a0e904d107fbe4a46c51dda9419..1a4cec863a2b3ddba6a675b2d6dd30dc2e462891 100644 --- a/method_inputs/a2/STEP_UP_X10_1K/receipts/identity_scan_51970188.json +++ b/method_inputs/a2/STEP_UP_X10_1K/receipts/identity_scan_51970188.json @@ -6,7 +6,7 @@ "plan_sha256s": [ "16a942f0d961889bcd9ace412f698d6a8c481fa01244dbcc75adf4c6dafe59aa" ], - "registry_path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl", + "registry_path": "$WORK/registry109k/raw_index.jsonl", "registry_size_bytes": 219776193, "schema": "bench_h2h.registry_identity_scan.v1", "utc": "2026-09-16T17:25:13Z" diff --git a/method_inputs/a2/STEP_UP_X10_1K/receipts/open_audit_51970188.json b/method_inputs/a2/STEP_UP_X10_1K/receipts/open_audit_51970188.json index bce1690d7e6ac481b974d6a6aaaf5b68aac1b90d..9c64f0bd3792e52e1beec214987cb4a115b10945 100644 --- a/method_inputs/a2/STEP_UP_X10_1K/receipts/open_audit_51970188.json +++ b/method_inputs/a2/STEP_UP_X10_1K/receipts/open_audit_51970188.json @@ -2,671 +2,671 @@ "opened": [ { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000001.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000001.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000002.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000002.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/registry109k/raw_index.jsonl" + "path": "$WORK/registry109k/raw_index.jsonl" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/receipts/identity_scan_51970188.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/receipts/identity_scan_51970188.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.done.json" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.done.json" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.npz" + "path": "$WORK/bench_h2h_20260915/data/v2_a2_STEP_UP_X10_1K/samples/.fragments/fragment_00000000.npz" }, { "mode": "r", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_STEP_UP_X10_1K/chain0_level32/sample_identities.jsonl" + "path": "$WORK/bench_h2h_20260915/cohort/v2_a2_STEP_UP_X10_1K/chain0_level32/sample_identities.jsonl" }, { "mode": "r", - 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"path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/r00000007/v0_n32.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/r00000007/v0_n32.json" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/receipts/export_51970188.json" + "path": "$WORK/bench_h2h_20260915/export/v2_a2_STEP_UP_X10_1K/receipts/export_51970188.json" }, { "mode": "w", - "path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/events.log" + "path": "$WORK/bench_h2h_20260915/events.log" } ], "purposes": [ diff --git a/method_inputs/a2/Z0/r00000000/n32/meta.json b/method_inputs/a2/Z0/r00000000/n32/meta.json index 24eea3434f622c520ec8be090261ab104dc1f37d..1453e54fc1c48a4fb6d9e3c9ad0aa153de7f5348 100644 --- a/method_inputs/a2/Z0/r00000000/n32/meta.json +++ b/method_inputs/a2/Z0/r00000000/n32/meta.json @@ -2,7 +2,7 @@ "S": 122046, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_Z0/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_Z0/chain0_level32/unphased_evidence_cache.npz", "cache_row": 0, "cache_sha256": "98fe7a84ff2716b0d8beb33494aa10c631fe3495ea280acc3e3f3f875648c1b3", "canonical_id": "266e756dccc2d9a1d4432cf4420c4775e0bd2676d2eb2f8da49ef8c4c3ec8643:00000000", @@ -50,7 +50,7 @@ "view.bcf": "3ec83ec98871fed05f160f911b305482d2a9a1129a531bfdb04f31d842d84025", "view.bcf.csi": "832751a850a2effd4b407b696306b7ced2e708208ac195582517eafec9825d1b" }, - 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"fragment_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/data/v2_a2_Z0/samples/.fragments/fragment_00000001.npz", + "fragment_path": "$WORK/bench_h2h_20260915/data/v2_a2_Z0/samples/.fragments/fragment_00000001.npz", "fragment_sha256": "36be8a337a0eac22316691f91eb3070ff9418fd655935db7ee19df673ee90894", "ladder_columns": [ 22, diff --git a/method_inputs/a2/Z0/r00000005/n32/meta.json b/method_inputs/a2/Z0/r00000005/n32/meta.json index ce320fc7be2c52b122f6422e05de111732cf8a40..d4e9cc064fe0eb8b4250b4e57e27059f03711d9f 100644 --- a/method_inputs/a2/Z0/r00000005/n32/meta.json +++ b/method_inputs/a2/Z0/r00000005/n32/meta.json @@ -2,7 +2,7 @@ "S": 122069, "arm": "CLEAN_NOISE", "bcftools_version": "bcftools 1.16-90-gab5de54-dirty", - "cache_path": "/ibex/project/c2041/hany0c/bench_h2h_20260915/cohort/v2_a2_Z0/chain0_level32/unphased_evidence_cache.npz", + "cache_path": "$WORK/bench_h2h_20260915/cohort/v2_a2_Z0/chain0_level32/unphased_evidence_cache.npz", "cache_row": 5, "cache_sha256": "98fe7a84ff2716b0d8beb33494aa10c631fe3495ea280acc3e3f3f875648c1b3", "canonical_id": "266e756dccc2d9a1d4432cf4420c4775e0bd2676d2eb2f8da49ef8c4c3ec8643:00000005", @@ -50,7 +50,7 @@ "view.bcf": "6b8aef8ee82634123b2b60177b489f91df03011019f3d2c602deeae52f6957ad", "view.bcf.csi": "e80807ad89a1a6bba807eb3c3da98855fb8927dc115aa76fbee67031571cda65" }, - 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