from __future__ import annotations import dataclasses import hashlib import json from pathlib import Path import pytest from simulator import replacement from simulator.config import Config from simulator.dataset_state import SAMPLE_GENERATOR_SCHEMA_VERSION, generation_config_state def _canonical(value: object) -> str: return hashlib.sha256( json.dumps( value, sort_keys=True, separators=(",", ":"), allow_nan=False, ).encode() ).hexdigest() def _write_json(path: Path, value: dict) -> None: path.parent.mkdir(parents=True, exist_ok=True) path.write_text(json.dumps(value), encoding="utf-8") def _file_record(path: Path) -> dict: return { "size_bytes": path.stat().st_size, "sha256": hashlib.sha256(path.read_bytes()).hexdigest(), } def _source_plan(root: Path, *, n: int, seed: int, marker: str = "same") -> dict: cfg = Config( preset="full_v01", n_samples=n, seed=seed, shard_size=2, compute_chunk_size=1, out_dir=str(root), workers=4, ) state = generation_config_state(cfg) layout = { "n_samples": n, "shard_size": 2, "compute_chunk_size": 1, "n_shards": (n + 1) // 2, "n_chunks": n, "sample_id_rule": "sim_{global_sample_index:08d}", "seed_rule": "config.seed + global_sample_index * 7919", "partition_rule": "chunk_idx_mod_world_size", "array_schema_version": SAMPLE_GENERATOR_SCHEMA_VERSION, } plan = { "schema_version": 1, "kind": "dlcoalsim_generation_plan", "sample_generation_config": state, "layout": layout, "layout_sha256": _canonical(layout), "empirical_maps_sha256": hashlib.sha256(f"map-{marker}".encode()).hexdigest(), "empirical_ne_templates_sha256": hashlib.sha256( f"template-{marker}".encode() ).hexdigest(), "runtime_environment_sha256": hashlib.sha256( f"runtime-{marker}".encode() ).hexdigest(), } plan["plan_sha256"] = _canonical(plan) _write_json(root / "samples" / "PLAN.json", plan) return plan def _receipt( root: Path, plan: dict, *, kind: str, index: int, shard: int, start: int, count: int, ) -> None: if kind == "final": relative = f"samples/shard_{shard:05d}.npz" receipt_path = root / "samples" / ".receipts" / f"shard_{shard:05d}.done.json" result = { "shard_idx": shard, "start": start, "n_samples": count, "shard_path": relative, } else: relative = f"samples/.fragments/fragment_{index:08d}.npz" receipt_path = ( root / "samples" / ".fragments" / f"fragment_{index:08d}.done.json" ) result = { "chunk_idx": index, "shard_idx": shard, "start": start, "n_samples": count, "fragment_path": relative, } npz = root / relative metadata = npz.with_suffix(".jsonl.gz") npz.parent.mkdir(parents=True, exist_ok=True) npz.write_bytes(f"npz-{kind}-{index}".encode()) metadata.write_bytes(f"meta-{kind}-{index}".encode()) receipt = { "schema_version": 1, "plan_sha256": plan["plan_sha256"], "result": result, "files": { "npz": _file_record(npz), "metadata_jsonl_gz": _file_record(metadata), }, } receipt["receipt_sha256"] = _canonical(receipt) _write_json(receipt_path, receipt) def _sources(tmp_path: Path) -> tuple[Path, Path, dict, dict]: left = tmp_path / "left" right = tmp_path / "right" left_plan = _source_plan(left, n=4, seed=100) right_plan = _source_plan( right, n=3, seed=100 + 4 * replacement.SEED_STRIDE ) return left, right, left_plan, right_plan def test_scan_prefers_final_receipt_and_never_double_counts(tmp_path: Path) -> None: left, _, plan, _ = _sources(tmp_path) _receipt(left, plan, kind="final", index=0, shard=0, start=0, count=2) _receipt(left, plan, kind="fragment", index=0, shard=0, start=0, count=1) _receipt(left, plan, kind="fragment", index=1, shard=0, start=1, count=1) _receipt(left, plan, kind="fragment", index=2, shard=1, start=2, count=1) snapshot = replacement._scan_source(left) assert snapshot["completed_samples"] == 3 assert snapshot["selected_final_receipts"] == 1 assert snapshot["selected_fragment_receipts"] == 1 assert snapshot["ignored_fragments_covered_by_final"] == 2 assert [(row["kind"], row["start"]) for row in snapshot["selected_receipts"]] == [ ("final", 0), ("fragment", 2), ] def test_audit_rejects_config_hash_and_seed_overlap(tmp_path: Path) -> None: left, right, left_plan, right_plan = _sources(tmp_path) _receipt(left, left_plan, kind="fragment", index=0, shard=0, start=0, count=1) _receipt(right, right_plan, kind="fragment", index=0, shard=0, start=0, count=1) assert len(replacement._audit_sources([left, right])) == 2 changed = json.loads((right / "samples" / "PLAN.json").read_text()) changed["empirical_maps_sha256"] = "0" * 64 changed.pop("plan_sha256") changed["plan_sha256"] = _canonical(changed) _write_json(right / "samples" / "PLAN.json", changed) _receipt( right, changed, kind="fragment", index=0, shard=0, start=0, count=1, ) with pytest.raises(replacement.ReplacementPlanError, match="empirical_maps"): replacement._audit_sources([left, right]) overlapping = tmp_path / "overlap" overlap_plan = _source_plan( overlapping, n=2, seed=100 + replacement.SEED_STRIDE ) _receipt( overlapping, overlap_plan, kind="fragment", index=0, shard=0, start=0, count=1, ) with pytest.raises(replacement.ReplacementPlanError, match="seed sequences overlap"): replacement._audit_sources([left, overlapping]) def test_corrupt_receipt_or_missing_artifact_fails_closed(tmp_path: Path) -> None: left, _, plan, _ = _sources(tmp_path) _receipt(left, plan, kind="fragment", index=0, shard=0, start=0, count=1) receipt_path = ( left / "samples" / ".fragments" / "fragment_00000000.done.json" ) receipt = json.loads(receipt_path.read_text()) receipt["result"]["start"] = 1 _write_json(receipt_path, receipt) with pytest.raises(replacement.ReplacementPlanError, match="fingerprint"): replacement._scan_source(left) _receipt(left, plan, kind="fragment", index=0, shard=0, start=0, count=1) (left / "samples" / ".fragments" / "fragment_00000000.npz").unlink() with pytest.raises(replacement.ReplacementPlanError, match="missing"): replacement._scan_source(left) def test_prepare_freezes_deficit_tail_and_immutable_runtime( tmp_path: Path, monkeypatch: pytest.MonkeyPatch ) -> None: left, right, left_plan, right_plan = _sources(tmp_path) for index in range(3): _receipt( left, left_plan, kind="fragment", index=index, shard=index // 2, start=index, count=1, ) for index in range(2): _receipt( right, right_plan, kind="fragment", index=index, shard=index // 2, start=index, count=1, ) runtime = left_plan["runtime_environment_sha256"] monkeypatch.setattr( replacement, "_runtime_probe", lambda root, python: { "simulator_file": str(root / "simulator" / "__init__.py"), "runtime_environment_sha256": runtime, }, ) prepared_config: dict | None = None def fake_run(root, python, arguments, *, module=True): nonlocal prepared_config assert module assert arguments[-1] == "--prepare-only" values = {} iterator = iter(arguments[:-1]) for token in iterator: if token.startswith("--") and token not in { "--include-truth", "--enable-stdpopsim", "--mut-map-scale-to-baseline", "--no-mut-map-scale-to-baseline", "--no-compression", }: values[token] = next(iterator) prepared_config = values return type("Completed", (), {"stdout": "", "stderr": ""})() monkeypatch.setattr(replacement, "_run_generator_subprocess", fake_run) expected_generation_plan = { "plan_sha256": "9" * 64, "empirical_maps_sha256": left_plan["empirical_maps_sha256"], "empirical_ne_templates_sha256": left_plan[ "empirical_ne_templates_sha256" ], "runtime_environment_sha256": runtime, } monkeypatch.setattr( replacement, "_validate_replacement_generation_plan", lambda out, config, source: expected_generation_plan, ) generator_root = tmp_path / "deploy" generator_root.mkdir() generator_python = tmp_path / "python" generator_python.write_text("") output = tmp_path / "replacement" plan = replacement.prepare_replacement( [left, right], target_total=7, out_dir=output, generator_root=generator_root, generator_python=generator_python, workers=8, ) assert plan["completed_source_samples"] == 5 assert plan["deficit_samples"] == 2 assert plan["tail_seed"] == 100 + 7 * replacement.SEED_STRIDE assert plan["replacement_config"]["n_samples"] == 2 assert plan["replacement_config"]["seed"] == plan["tail_seed"] assert plan["replacement_config"]["compute_chunk_size"] == 1 assert plan["replacement_config"]["workers"] == 8 assert prepared_config["--n-samples"] == "2" assert prepared_config["--seed"] == str(plan["tail_seed"]) assert (output / replacement.PLAN_NAME).is_file() def test_zero_deficit_is_a_safe_noop( tmp_path: Path, monkeypatch: pytest.MonkeyPatch ) -> None: left = tmp_path / "left" source_plan = _source_plan(left, n=2, seed=10) _receipt(left, source_plan, kind="final", index=0, shard=0, start=0, count=2) runtime = source_plan["runtime_environment_sha256"] monkeypatch.setattr( replacement, "_runtime_probe", lambda root, python: { "simulator_file": str(root / "simulator" / "__init__.py"), "runtime_environment_sha256": runtime, }, ) monkeypatch.setattr( replacement, "_run_generator_subprocess", lambda *args, **kwargs: pytest.fail("zero deficit invoked generator"), ) generator_root = tmp_path / "deploy" generator_root.mkdir() generator_python = tmp_path / "python" generator_python.write_text("") output = tmp_path / "replacement" plan = replacement.prepare_replacement( [left], target_total=2, out_dir=output, generator_root=generator_root, generator_python=generator_python, ) assert plan["deficit_samples"] == 0 assert plan["replacement_config"] is None assert replacement.generate_replacement(output) == { "no_op": True, "deficit_samples": 0, } assert replacement.finalize_replacement(output) == { "no_op": True, "deficit_samples": 0, } assert not (output / "samples").exists() assert not (output / replacement.DONE_NAME).exists() def test_prepare_rejects_wrong_generator_runtime( tmp_path: Path, monkeypatch: pytest.MonkeyPatch ) -> None: left = tmp_path / "left" source_plan = _source_plan(left, n=2, seed=10) _receipt(left, source_plan, kind="fragment", index=0, shard=0, start=0, count=1) monkeypatch.setattr( replacement, "_runtime_probe", lambda root, python: { "simulator_file": str(root / "simulator" / "__init__.py"), "runtime_environment_sha256": "0" * 64, }, ) root = tmp_path / "deploy" root.mkdir() python = tmp_path / "python" python.write_text("") with pytest.raises(replacement.ReplacementPlanError, match="runtime hash differs"): replacement.prepare_replacement( [left], target_total=2, out_dir=tmp_path / "replacement", generator_root=root, generator_python=python, ) def test_prepare_rejects_noncontiguous_or_wrong_planned_coverage( tmp_path: Path, monkeypatch: pytest.MonkeyPatch ) -> None: left = tmp_path / "left" right = tmp_path / "right" left_plan = _source_plan(left, n=2, seed=10) right_plan = _source_plan( right, n=2, seed=10 + 3 * replacement.SEED_STRIDE ) _receipt(left, left_plan, kind="fragment", index=0, shard=0, start=0, count=1) _receipt(right, right_plan, kind="fragment", index=0, shard=0, start=0, count=1) monkeypatch.setattr( replacement, "_runtime_probe", lambda root, python: pytest.fail("coverage audit must precede runtime probe"), ) root = tmp_path / "deploy" root.mkdir() python = tmp_path / "python" python.write_text("") with pytest.raises(replacement.ReplacementPlanError, match="strictly contiguous"): replacement.prepare_replacement( [left, right], target_total=4, out_dir=tmp_path / "replacement", generator_root=root, generator_python=python, ) with pytest.raises(replacement.ReplacementPlanError, match="cover 2 planned"): replacement.prepare_replacement( [left], target_total=3, out_dir=tmp_path / "other", generator_root=root, generator_python=python, ) def test_config_argv_roundtrips_boolean_intent() -> None: cfg = dataclasses.asdict(Config()) cfg["force"] = False cfg["include_truth"] = True cfg["enable_stdpopsim"] = False cfg["mut_map_scale_to_baseline"] = False cfg["compression"] = False argv = replacement._config_argv(cfg) assert "--force" not in argv assert "--include-truth" in argv assert "--enable-stdpopsim" not in argv assert "--no-mut-map-scale-to-baseline" in argv assert "--no-compression" in argv def test_generate_streams_subprocess_output( tmp_path: Path, monkeypatch: pytest.MonkeyPatch ) -> None: output = tmp_path / "replacement" cfg = dataclasses.asdict(Config(n_samples=1, out_dir=str(output))) plan = { "schema_version": replacement.SCHEMA_VERSION, "kind": "dlcoalsim_tail_replacement", "out_dir": str(output.resolve()), "target_total": 1, "completed_source_samples": 0, "deficit_samples": 1, "tail_seed": 99, "seed_stride": replacement.SEED_STRIDE, "source_snapshot_sha256": "0" * 64, "sources": [], "source_provenance": {}, "immutable_generator": { "root": str(tmp_path), "python": str(tmp_path / "python"), }, "replacement_config": cfg, "generation_plan_sha256": "1" * 64, } plan["replacement_plan_sha256"] = _canonical(plan) _write_json(output / replacement.PLAN_NAME, plan) calls = [] def fake_run(root, python, arguments, *, module=True, capture_output=True): calls.append((module, capture_output)) return type("Completed", (), {"returncode": 0})() monkeypatch.setattr(replacement, "_run_generator_subprocess", fake_run) result = replacement.generate_replacement(output, rank=0, world_size=1) assert result["returncode"] == 0 assert calls == [(True, False)]