sample_id
large_stringlengths
12
12
window_number
int64
0
110k
split
large_stringclasses
4 values
stage
large_stringclasses
4 values
feature_row
int64
-1
105k
split_note
large_stringclasses
2 values
file
large_stringlengths
33
33
member
int64
0
3
metadata_file
large_stringlengths
38
38
file_sha256
large_stringlengths
64
64
metadata_file_sha256
large_stringlengths
64
64
Ne_ratio_max_min
float64
1
10k
ancient_mean_Ne
float64
100
1M
arg_detail
large_stringclasses
1 value
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large_stringclasses
1 value
curve_origin
large_stringclasses
3 values
dataset_regime
large_stringclasses
3 values
demography_mixture_version
large_stringclasses
1 value
demography_resolution_log10
float64
0.01
0.01
demography_type
large_stringclasses
8 values
demography_type_id
int64
0
7
direction
large_stringclasses
4 values
event_count
float64
1
4
⌀
event_duration
float64
0
450k
event_family
large_stringclasses
2 values
event_log_depths
large_stringlengths
16
87
⌀
event_permanent
bool
2 classes
event_severity
float64
0
1
event_time
float64
50
300k
⌀
generator_recipe
large_stringclasses
12 values
generator_recipe_id
int64
0
11
generator_recipe_key
large_stringclasses
48 values
generator_schema_version
int64
1
1
genotype_error
float64
0
0
has_ancient_event
bool
2 classes
has_recent_event
bool
2 classes
history_family
large_stringclasses
6 values
log10_ne_range
float64
0
4
map_mode
large_stringclasses
4 values
map_type
large_stringclasses
4 values
max_Ne
float64
153
1M
mean_abs_log10_change
float64
0
3.3
mean_obs_mut_rate
float64
0
0
mean_obs_rec_rate
float64
0
0
min_Ne
float64
100
1M
missing_rate
float64
0
0.02
missing_storage
large_stringclasses
1 value
mu_mode
large_stringclasses
4 values
mut_slice_chrom
large_stringclasses
22 values
mut_slice_mean_rate_after_scaling
float64
0
0
⌀
mut_slice_mean_rate_before_scaling
float64
0
0
⌀
mut_slice_observed_cell_bp
float64
1k
20k
⌀
mut_slice_observed_noise_sigma
float64
0.48
0.48
⌀
mut_slice_rate_unit
large_stringclasses
1 value
mut_slice_rate_unit_after
large_stringclasses
1 value
mut_slice_rate_unit_before
large_stringclasses
1 value
mut_slice_scaling_method
large_stringclasses
1 value
mut_slice_slice_end_bp
float64
30M
248M
⌀
mut_slice_slice_start_bp
float64
942
218M
⌀
mut_slice_source_format
large_stringclasses
1 value
n_change_points
int64
0
3.95k
n_diploid_individuals
int64
64
64
n_epochs
int64
1
3.96k
n_haplotypes
int64
128
128
n_missing_genotypes
int64
0
23.5M
n_variants
int64
667
12.3M
noise_false_variant_count
int64
0
18.3k
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float64
0
0
noise_genotype_error
float64
0
0
noise_missing_rate
float64
0
0.02
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int64
0
3.13M
noise_phase_switch_heterozygous_sites
int64
0
158M
noise_phase_switch_model
large_stringclasses
1 value
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int64
0
64
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float64
0
0.02
noise_phaseable_pair_count
int64
64
64
noise_profile
large_stringclasses
2 values
num_sites
int64
398
12.3M
num_trees
int64
169
9.28M
obs_mut_rate_max
float64
0
0
obs_mut_rate_min
float64
0
0
obs_rec_rate_max
float64
0
0
obs_rec_rate_min
float64
0
0
observed_noise_sigma
float64
0.55
0.55
⌀
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float64
0
6.35k
pair_coalescences_before_grid
float64
0
3.23k
pair_coalescences_total
float64
1.78k
8.13k
phase_pairing
large_stringclasses
1 value
phase_switch_pair_count
int64
0
64
phaseable_pair_count
int64
64
64
rec_slice_chrom
large_stringclasses
22 values
rec_slice_mean_rate_after_scaling
float64
0
0
⌀
rec_slice_mean_rate_before_scaling
float64
12.5
21.5
⌀
rec_slice_observed_cell_bp
float64
1k
20k
⌀
rec_slice_observed_noise_sigma
float64
0.8
0.8
⌀
rec_slice_rate_unit
large_stringclasses
1 value
rec_slice_rate_unit_after
large_stringclasses
1 value
rec_slice_rate_unit_before
large_stringclasses
1 value
rec_slice_scaling_method
large_stringclasses
1 value
rec_slice_slice_end_bp
float64
30M
248M
⌀
rec_slice_slice_start_bp
float64
942
218M
⌀
rec_slice_source_format
large_stringclasses
1 value
recent_min_Ne
float64
100
1M
recomb_mode
large_stringclasses
4 values
resolvable_bins
int64
2
64
sample_index
int64
0
110k
sample_ploidy
int64
2
2
scenario
large_stringclasses
12 values
scenario_key
large_stringclasses
32 values
seed
int64
20.3M
891M
sequence_length
int64
30M
30M
slice_alignment
large_stringclasses
1 value
slice_chrom
large_stringclasses
22 values
slice_end_bp
float64
30M
248M
⌀
slice_start_bp
float64
942
218M
⌀
source_id
int64
0
3
source_type
large_stringclasses
4 values
std_obs_mut_rate
float64
0
0
std_obs_rec_rate
float64
0
0
target_aggregation
large_stringclasses
1 value
target_scale
large_stringclasses
1 value
target_time_bins
int64
64
64
target_time_span_min
float64
50
50
time_regime
large_stringclasses
5 values
time_span_max
float64
500k
500k
time_span_min
float64
0
0
total_variation_log10
float64
0
21.2
trajectory_form
large_stringclasses
7 values
truth_maps_written
bool
1 class
turn_count
int64
0
433
variant_density_per_mb
float64
22.2
410k
demography_function
large_stringclasses
2 values
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float64
1
3.96k
⌀
mut_map_meta_background_cell_bp
float64
1k
1k
⌀
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float64
0.03
0.07
⌀
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float64
0
0
⌀
mut_map_meta_coldspot_width_bp_mean
float64
0
0
⌀
mut_map_meta_correlation_bp
float64
1M
10M
⌀
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float64
0
0
⌀
mut_map_meta_hotspot_model
large_stringclasses
1 value
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float64
0
0
⌀
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float64
0.08
0.16
⌀
mut_map_meta_map_is_mutation
bool
1 class
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float64
0.33
0.33
⌀
mut_map_meta_observed_segments
float64
1.5k
30k
⌀
mut_map_meta_realised_rate_over_baseline
float64
1
1
⌀
mut_map_meta_synthetic_map_segments
float64
30k
30k
⌀
native_continuous_growth
bool
2 classes
ooa_ancestral_ne
float64
251
398k
⌀
ooa_bottleneck_duration
float64
158
39.9k
⌀
ooa_bottleneck_factor
float64
0.02
0.5
⌀
ooa_expansion_factor
float64
1.2
6
⌀
ooa_growth_factor
float64
2
399
⌀
rec_map_meta_background_cell_bp
float64
2k
2k
⌀
rec_map_meta_broad_sd
float64
0.5
1.5
⌀
rec_map_meta_coldspot_count
float64
0
3
⌀
rec_map_meta_coldspot_width_bp_mean
float64
0
500k
⌀
rec_map_meta_correlation_bp
float64
200k
3M
⌀
rec_map_meta_hotspot_count
float64
1.63k
2k
⌀
rec_map_meta_hotspot_model
large_stringclasses
1 value
rec_map_meta_hotspot_width_bp_mean
float64
529
589
⌀
rec_map_meta_local_sd
float64
0
0
⌀
rec_map_meta_map_is_mutation
bool
1 class
rec_map_meta_observed_noise_sigma
float64
0.55
0.55
⌀
rec_map_meta_observed_segments
float64
1.5k
30k
⌀
rec_map_meta_realised_rate_over_baseline
float64
1
1
⌀
rec_map_meta_synthetic_map_segments
float64
18.3k
19k
⌀
global_mu_rate
float64
0
0
⌀
global_rec_rate
float64
0
0
⌀
bottleneck_recovery_log10
float64
-0.6
0.6
⌀
curve_demography
bool
1 class
spectral_level
float64
2.4
5.6
⌀
spectral_n_modes
float64
6
48
⌀
spectral_ne_range
float64
0.02
3.27
⌀
spectral_seed
float64
40,512B
4,611,501,116B
⌀
spectral_slope
float64
0.6
2
⌀
spectral_tilt
float64
-1.2
1.2
⌀
stress_scenario
bool
2 classes
literature_shaped_family
bool
1 class
sawtooth_half_cycles
float64
4
10
⌀
sawtooth_log_ne_contrast
float64
0.45
1.9
⌀
sawtooth_onset
float64
50.1
3k
⌀
source_literature_model_id
large_stringclasses
1 value
zigzag_rate_change_count
float64
4
18
⌀
dense_demography
bool
1 class
dense_type
large_stringclasses
1 value
empirical_ne_template
bool
1 class
target_quality
large_stringclasses
1 value
template_bin_noise_sd
float64
0.03
0.03
⌀
template_contrast_scale
float64
0.7
1.45
⌀
template_curve_point_count
float64
32
1k
⌀
template_generation_time_years
float64
29
29
⌀
template_log10_shift
float64
-2.72
2.81
⌀
template_max_Ne
float64
23.2k
458k
⌀
template_method
large_stringclasses
4 values
template_min_Ne
float64
338
17.2k
⌀
template_path
large_stringclasses
5 values
template_population
large_stringclasses
191 values
template_source_key
large_stringclasses
5 values
template_time_max
float64
88k
1M
⌀
template_time_min
float64
0
1.82k
⌀
template_time_scale
float64
0.56
1.73
⌀
template_time_unit
large_stringclasses
5 values
held_out_evaluation
bool
1 class
literature_demography_anchor
bool
1 class
literature_model_id
large_stringclasses
18 values
stdpopsim_generation_time_years
float64
0.09
30
⌀
stdpopsim_model_id
large_stringclasses
18 values
stdpopsim_ne_rescale
float64
0.2
1.11
⌀
stdpopsim_population
large_stringclasses
14 values
stdpopsim_species
large_stringclasses
8 values
exponential_direction
large_stringclasses
2 values
exponential_log10_factor
float64
-2.19
2.2
⌀
oscillation_amplitude_drift
float64
-1.6
1.6
⌀
oscillation_end
float64
806
450k
⌀
oscillation_onset
float64
50
14.9k
⌀
oscillation_regularity
float64
1
59.9
⌀
oscillation_strength_fraction
float64
0
1
⌀
oscillation_swing_uniformity
float64
0
1
⌀
zigzag_internal_extrema_count
float64
2
16
⌀
control_type
large_stringclasses
1 value
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149,307,680.534444
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per_bp_per_generation
per_bp_per_generation
per_bp
identity
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bed_intervals
3
64
4
128
8,186
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594
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diploid_pair_switch_per_heterozygous_site
62
0.013481
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mild_noise
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0
0
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0
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diploid_individual_haplotypes
62
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0
16.390859
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per_bp_per_generation
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cM_per_Mb
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72,230,794.873114
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bed_intervals
148.174757
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3
2
ooa_chain
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shared_chromosomal_interval
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empirical_map_slice
0
0
log_time_bin_average
log10_Ne
64
50
intermediate
500,000
0
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247.7
piecewise_exponential_linear_time
4
null
null
null
null
null
null
null
null
null
null
null
null
null
null
true
261.753535
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null
null
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null
null
null
null
null
sim_00000004
4
train
fit
3
windows/000/fragment_00000001.npz
0
windows/000/fragment_00000001.jsonl.gz
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0
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null
null
null
null
null
null
null
null
null
2
64
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128
852,548
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diploid_pair_switch_per_heterozygous_site
64
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mild_noise
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0
0
0
null
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64
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null
null
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41
4
2
bottleneck
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null
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null
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random_global_mu_r
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log_time_bin_average
log10_Ne
64
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recent
500,000
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null
null
null
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sim_00000005
5
train
fit
4
windows/000/fragment_00000001.npz
1
windows/000/fragment_00000001.jsonl.gz
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generic_synthetic
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3
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2
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monotonic_change
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synthetic_heterogeneous
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0
0
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sparse_flat_index_uint32
synthetic_heterogeneous
null
null
null
null
null
null
null
null
null
null
null
null
3
64
4
128
1,564,252
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6,738
0.000225
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diploid_pair_switch_per_heterozygous_site
64
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mild_noise
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0
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diploid_individual_haplotypes
64
64
null
null
null
null
null
null
null
null
null
null
null
null
204,922.173998
synthetic_heterogeneous
30
5
2
multi_event
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null
null
null
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custom_heterogeneous
0
0
log_time_bin_average
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64
50
intermediate
500,000
0
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piecewise_step
false
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20,723.166667
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null
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0
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physical_grid_exact_span
0
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null
null
null
null
null
2,000
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75,495.000517
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physical_grid_exact_span
561.754751
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false
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1
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null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
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null
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null
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null
null
null
null
null
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null
null
null
null
null
null
null
null
null
null
null
sim_00000006
6
train
fit
5
windows/000/fragment_00000001.npz
2
windows/000/fragment_00000001.jsonl.gz
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generic_synthetic
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v1
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4
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2
0
null
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monotonic_change
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constant_random_global
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0
0
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sparse_flat_index_uint32
constant_random_global
null
null
null
null
null
null
null
null
null
null
null
null
411
64
412
128
4,940,201
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diploid_pair_switch_per_heterozygous_site
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mild_noise
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0
0
0
0
null
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diploid_individual_haplotypes
64
64
null
null
null
null
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null
null
null
null
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null
null
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45
6
2
event_on_background
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null
null
null
1
random_global_mu_r
0
0
log_time_bin_average
log10_Ne
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multiscale
500,000
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412
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null
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null
null
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sim_00000007
7
train
fit
6
windows/000/fragment_00000001.npz
3
windows/000/fragment_00000001.jsonl.gz
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generic_synthetic
normal
v1
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4
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null
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empirical_slice
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0
0
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sparse_flat_index_uint32
empirical_slice
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0
0
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per_bp_per_generation
per_bp
identity
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bed_intervals
412
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413
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diploid_pair_switch_per_heterozygous_site
64
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mild_noise
72,960
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0
0
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0
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diploid_individual_haplotypes
64
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chr14
0
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per_bp_per_generation
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cM_per_Mb
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82,955,866.063786
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2
event_on_background
contraction|empirical_slice|mild_noise
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shared_chromosomal_interval
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empirical_map_slice
0
0
log_time_bin_average
log10_Ne
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multiscale
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0
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null
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null
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null
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null
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sim_00000008
8
train
fit
7
windows/000/fragment_00000002.npz
0
windows/000/fragment_00000002.jsonl.gz
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generic_synthetic
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v1
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null
null
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ooa_chain
6
ooa_chain|constant_clean|clean
1
0
false
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0
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sparse_flat_index_uint32
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null
null
null
null
null
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null
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64
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128
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0
0
0
0
0
diploid_pair_switch_per_heterozygous_site
0
0
64
clean
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0
0
null
0
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diploid_individual_haplotypes
0
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null
null
null
null
null
null
null
null
null
null
null
null
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constant
41
8
2
ooa_chain
bottleneck|constant_clean|clean
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null
null
null
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clean_constant_map
0
0
log_time_bin_average
log10_Ne
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intermediate
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null
null
null
null
null
null
null
null
null
null
null
null
null
true
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sim_00000009
9
train
fit
8
windows/000/fragment_00000002.npz
1
windows/000/fragment_00000002.jsonl.gz
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empirical_slice
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0
0
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sparse_flat_index_uint32
empirical_slice
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0
0
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per_bp_per_generation
per_bp_per_generation
per_bp
identity
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bed_intervals
2,572
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diploid_pair_switch_per_heterozygous_site
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mild_noise
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0
0.000006
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diploid_individual_haplotypes
64
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chr19
0
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per_bp_per_generation
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cM_per_Mb
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46,392,900.268866
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9
2
spectral_walk
random_walk|empirical_slice|mild_noise
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empirical_map_slice
0
0
log_time_bin_average
log10_Ne
64
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multiscale
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false
26
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null
null
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sim_00000010
10
development
none
9
windows/000/fragment_00000002.npz
2
windows/000/fragment_00000002.jsonl.gz
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v1
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0
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sparse_flat_index_uint32
synthetic_heterogeneous
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null
null
null
null
null
2
64
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128
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diploid_pair_switch_per_heterozygous_site
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mild_noise
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0
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null
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diploid_individual_haplotypes
64
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synthetic_heterogeneous
43
10
2
size_event
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custom_heterogeneous
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log_time_bin_average
log10_Ne
64
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ancient
500,000
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0
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physical_grid_exact_span
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sim_00000011
11
train
fit
10
windows/000/fragment_00000002.npz
3
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PJL
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sparse_flat_index_uint32
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bed_intervals
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mild_noise
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bed_intervals
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empirical_slice
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2
ooa_chain
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shared_chromosomal_interval
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empirical_map_slice
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log_time_bin_average
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4,316.633333
piecewise_exponential_linear_time
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sim_00000019
19
train
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sparse_flat_index_uint32
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diploid_pair_switch_per_heterozygous_site
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mild_noise
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constant_random_global
43
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2
bottleneck
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random_global_mu_r
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log_time_bin_average
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20
train
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null
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55
64
56
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374,161
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diploid_pair_switch_per_heterozygous_site
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mild_noise
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diploid_individual_haplotypes
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null
null
null
null
null
null
null
null
null
null
null
null
3,643
synthetic_heterogeneous
52
20
2
stdpopsim_single_pop
stdpopsim|synthetic_heterogeneous|mild_noise
20,419,204
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null
null
null
null
2
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log_time_bin_average
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500,000
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piecewise_exponential_linear_time
56
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physical_grid_exact_span
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null
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0
0
558,946.277382
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null
null
null
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null
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null
null
null
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null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
true
true
MusculusKorea_1F22
1
MusculusKorea_1F22
1
M_musculus_musculus
MusMus
null
null
null
null
null
null
null
null
null
null
sim_00000021
21
train
fit
20
windows/000/fragment_00000005.npz
1
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summary
generic_synthetic
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mixed
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false
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multi_event
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multi_event|synthetic_heterogeneous|mild_noise
1
0.00202
true
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monotonic_change
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synthetic_heterogeneous
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0
0
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sparse_flat_index_uint32
synthetic_heterogeneous
null
null
null
null
null
null
null
null
null
null
null
null
4
64
5
128
44,675
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0.00035
0.00202
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2,628
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diploid_pair_switch_per_heterozygous_site
64
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64
mild_noise
10,315
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0
0
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0
null
0
498.535752
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diploid_individual_haplotypes
64
64
null
null
null
null
null
null
null
null
null
null
null
null
405.042548
synthetic_heterogeneous
52
21
2
multi_event
contraction|synthetic_heterogeneous|mild_noise
20,427,123
30,000,000
null
null
null
null
2
custom_heterogeneous
0
0
log_time_bin_average
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64
50
multiscale
500,000
0
1.903489
piecewise_step
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3
689.266667
null
null
1,000
0.034456
0
0
1,274,377.207108
0
physical_grid_exact_span
0
0.109504
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0.33
1,850
1
30,000
null
null
null
null
null
null
2,000
1.17123
1
52,066.708709
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physical_grid_exact_span
559.486543
0
false
0.55
6,264
1
18,648
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
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null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
sim_00000022
22
train
fit
21
windows/000/fragment_00000005.npz
2
windows/000/fragment_00000005.jsonl.gz
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summary
generic_synthetic
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0.005
bottleneck
2
mixed
null
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null
null
null
0.007954
1,574.236667
ooa_chain
6
ooa_chain|synthetic_heterogeneous|mild_noise
1
0.002508
true
true
single_pulse
2.09941
synthetic_heterogeneous
synthetic_heterogeneous
790,970.870537
1.201074
0
0
6,291.441753
0.004831
sparse_flat_index_uint32
synthetic_heterogeneous
null
null
null
null
null
null
null
null
null
null
null
null
3
64
4
128
143,724
232,821
1,169
0.000038
0.002508
0.004831
13,278
2,914,543
diploid_pair_switch_per_heterozygous_site
64
0.004592
64
mild_noise
231,652
154,972
0
0
0
0
null
0
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8,127.525626
diploid_individual_haplotypes
64
64
null
null
null
null
null
null
null
null
null
null
null
null
6,291.441753
synthetic_heterogeneous
42
22
2
ooa_chain
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20,435,042
30,000,000
null
null
null
null
2
custom_heterogeneous
0
0
log_time_bin_average
log10_Ne
64
50
multiscale
500,000
0
3.603221
piecewise_exponential
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2
7,760.7
piecewise_exponential_linear_time
4
1,000
0.061156
0
0
2,598,876.536398
0
physical_grid_exact_span
0
0.121474
true
0.33
2,510
1
30,000
true
8,990.934434
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0.148104
4.724743
125.721719
2,000
0.931687
2
173,232.438901
612,161.941532
1,776
physical_grid_exact_span
562.587048
0
false
0.55
2,083
1
18,555
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
sim_00000023
23
train
fit
22
windows/000/fragment_00000005.npz
3
windows/000/fragment_00000005.jsonl.gz
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summary
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2
mixed
1
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0.097645
4,664.085912
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3
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0.001584
false
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single_pulse
1.010352
synthetic_heterogeneous
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0.754434
0
0
390.415113
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sparse_flat_index_uint32
synthetic_heterogeneous
null
null
null
null
null
null
null
null
null
null
null
null
2
64
3
128
13,619
24,038
598
0.00002
0.001584
0.004359
1,187
200,783
diploid_pair_switch_per_heterozygous_site
64
0.00586
64
mild_noise
23,440
17,473
0
0
0
0
null
0
49.487574
8,078.512426
diploid_individual_haplotypes
64
64
null
null
null
null
null
null
null
null
null
null
null
null
390.415113
synthetic_heterogeneous
39
23
2
bottleneck
bottleneck|synthetic_heterogeneous|mild_noise
20,442,961
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null
null
null
null
2
custom_heterogeneous
0
0
log_time_bin_average
log10_Ne
64
50
intermediate
500,000
0
1.508867
piecewise_step
false
1
801.266667
null
null
1,000
0.037122
0
0
4,064,885.793828
0
physical_grid_exact_span
0
0.099513
true
0.33
7,278
1
30,000
null
null
null
null
null
null
2,000
0.853928
2
228,031.847102
2,029,958.302133
1,847
physical_grid_exact_span
554.484288
0
false
0.55
3,619
1
18,698
null
null
-0.511837
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
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sim_00000024
24
train
fit
23
windows/000/fragment_00000006.npz
0
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9.73973
1,000,000
summary
generic_synthetic
normal
v1
0.005
bottleneck
2
mixed
1
5.235231
null
[-0.5818571627694723]
false
0.102672
124.913898
bottleneck
3
bottleneck|constant_clean|clean
1
0
false
true
single_pulse
0.988547
constant_clean
constant_clean
1,000,000
0.785202
0
0
102,672.254411
0
sparse_flat_index_uint32
constant
null
null
null
null
null
null
null
null
null
null
null
null
2
64
3
128
0
7,062,499
0
0
0
0
0
0
diploid_pair_switch_per_heterozygous_site
0
0
64
clean
7,062,499
5,171,583
0
0
0
0
null
6,320.520312
0.731256
1,806.748432
diploid_individual_haplotypes
0
64
null
null
null
null
null
null
null
null
null
null
null
null
102,672.254411
constant
24
24
2
bottleneck
bottleneck|constant_clean|clean
20,450,880
30,000,000
null
null
null
null
0
clean_constant_map
0
0
log_time_bin_average
log10_Ne
64
50
recent
500,000
0
1.570404
piecewise_step
false
1
235,416.633333
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
0
0
0.40669
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
sim_00000025
25
train
fit
24
windows/000/fragment_00000006.npz
1
windows/000/fragment_00000006.jsonl.gz
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summary
empirical_derived
normal
v1
0.005
empirical_human_ne_template
6
mixed
null
0
null
null
null
0.048411
null
empirical_human_ne_template
10
empirical_human_ne_template|synthetic_heterogeneous|mild_noise
1
0.003215
true
true
free_form
1.315053
synthetic_heterogeneous
synthetic_heterogeneous
26,659.688312
0.00363
0
0
1,290.63041
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sparse_flat_index_uint32
synthetic_heterogeneous
null
null
null
null
null
null
null
null
null
null
null
null
2,497
64
2,498
128
65,488
25,881
588
0.000019
0.003215
0.019804
6,486
384,082
diploid_pair_switch_per_heterozygous_site
64
0.017065
64
mild_noise
25,293
15,906
0
0
0
0
null
0
110.568676
8,017.431324
diploid_individual_haplotypes
64
64
null
null
null
null
null
null
null
null
null
null
null
null
1,290.63041
synthetic_heterogeneous
51
25
2
empirical_human_ne_template
empirical_human_ne_template|synthetic_heterogeneous|mild_noise
20,458,799
30,000,000
null
null
null
null
2
custom_heterogeneous
0
0
log_time_bin_average
log10_Ne
64
50
multiscale
500,000
0
9.06328
empirical_template
false
334
862.7
null
2,498
1,000
0.064442
0
0
1,850,837.707591
0
physical_grid_exact_span
0
0.127887
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0.33
14,669
1
30,000
null
null
null
null
null
null
2,000
1.48654
1
166,067.654543
2,896,892.282782
1,664
physical_grid_exact_span
558.820675
0
false
0.55
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18,330
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
true
empirical_human_ne_template
true
empirical_inference_template_perturbed
0.025
0.832766
1,000
29
-0.399681
92,077.051958
PHLaSH
2,569.838244
/ibex/user/hany0c/DLCoalSim/gen-deploy-20260822-tolerance-v3/simulator/assets/templates/human_ne/phlash_unified_populations_normalized.csv
Ami
phlash_unified
1,000,000
100
0.702699
generations; normalized from phlash_paper fig7a
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
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sim_00000026
26
train
none
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bottleneck
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diploid_pair_switch_per_heterozygous_site
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diploid_individual_haplotypes
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empirical_human_ne_template
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empirical_human_ne_template
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exponential
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29
train
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sparse_flat_index_uint32
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64
0.008146
64
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212.783412
7,915.216588
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64
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14.175722
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per_bp_per_generation
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29
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sawtooth
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empirical_map_slice
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0
log_time_bin_average
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50
multiscale
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284.5
piecewise_exponential_linear_time
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null
null
null
null
null
null
null
null
null
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null
null
null
null
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null
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train
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null
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64
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128
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9,357
484
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0.002487
112
58,579
diploid_pair_switch_per_heterozygous_site
57
0.002161
64
mild_noise
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null
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8,006.166361
diploid_individual_haplotypes
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64
null
null
null
null
null
null
null
null
null
null
null
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synthetic_heterogeneous
33
30
2
literature_sawtooth
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null
null
null
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log_time_bin_average
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50
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4.201535
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3
311.9
piecewise_exponential_linear_time
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1,000
0.042677
0
0
9,566,363.69414
0
physical_grid_exact_span
0
0.15149
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0.33
24,312
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30,000
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null
null
null
null
null
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0.795934
0
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2,356,919.960717
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0
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18,502
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null
null
null
null
null
null
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0.856243
1,076.819551
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4
null
null
null
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sim_00000031
31
train
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sparse_flat_index_uint32
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null
null
null
null
null
null
null
null
null
null
null
6
64
7
128
2,145,784
1,676,211
651
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0.009998
147,038
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diploid_pair_switch_per_heterozygous_site
64
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64
mild_noise
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821,351
0
0
0
0
null
2,048.794908
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diploid_individual_haplotypes
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64
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null
null
null
null
null
null
null
null
null
null
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36,045.248227
synthetic_heterogeneous
36
31
2
literature_sawtooth
zigzag|synthetic_heterogeneous|mild_noise
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null
null
null
2
custom_heterogeneous
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log_time_bin_average
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64
50
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piecewise_exponential
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5
55,873.7
piecewise_exponential_linear_time
7
1,000
0.06799
0
0
2,593,584.715015
0
physical_grid_exact_span
0
0.096197
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0.33
25,698
1
30,000
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null
null
null
null
2,000
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0
0
2,649,982.229857
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18,592
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null
null
null
null
null
null
null
null
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1.082989
756.825484
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6
null
null
null
null
null
null
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null
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null
null
null
null
null
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null
null
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null
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sim_00000032
32
train
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sparse_flat_index_uint32
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null
944
64
945
128
1,563,663
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0.000107
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219,612
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diploid_pair_switch_per_heterozygous_site
64
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mild_noise
764,968
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0
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null
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diploid_individual_haplotypes
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64
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null
null
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27,895.529329
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32
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event_on_background
contraction|synthetic_heterogeneous|mild_noise
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null
null
null
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custom_heterogeneous
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log_time_bin_average
log10_Ne
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0
4.2124
resolved_curve
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16
25,606.933333
null
945
1,000
0.065871
0
0
2,224,468.556281
0
physical_grid_exact_span
0
0.13905
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0.33
3,023
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30,000
null
null
null
null
null
null
2,000
0.513675
2
69,558.204289
715,965.92847
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560.074942
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0.830611
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train
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bed_intervals
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64
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886
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2,747
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64
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64
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18.858462
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per_bp_per_generation
per_bp_per_generation
cM_per_Mb
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size_event
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train
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train
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train
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train
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train
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train
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train
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train
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empirical_human_ne_template
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empirical_human_ne_template
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sim_00000068
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train
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diploid_individual_haplotypes
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68
2
empirical_human_ne_template
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empirical_human_ne_template
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empirical_inference_template_perturbed
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29
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/ibex/user/hany0c/DLCoalSim/gen-deploy-20260822-tolerance-v3/simulator/assets/templates/human_ne/phlash_superpopulations_normalized.csv
East Asia
phlash_super
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100
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null
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sim_00000069
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train
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empirical_human_ne_template|empirical_slice|mild_noise
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empirical_slice
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sparse_flat_index_uint32
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499
70,838
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64
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per_bp_per_generation
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69
2
empirical_human_ne_template
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empirical_map_slice
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0
log_time_bin_average
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50
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empirical_template
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15
881.7
null
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true
empirical_human_ne_template
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empirical_inference_template_perturbed
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0.973472
101
29
-1.135018
197,215.116945
SMC++
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/ibex/user/hany0c/DLCoalSim/gen-deploy-20260822-tolerance-v3/simulator/assets/templates/human_ne/smcpp_popsizes_1kg.csv
MXL
smcpp_1kg
97,791.508441
0
1.045543
years converted to generations using generation_time=29
null
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sim_00000070
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train
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windows/000/fragment_00000017.npz
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149.711952
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multi_event|constant_clean|clean
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sparse_flat_index_uint32
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4
64
5
128
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diploid_pair_switch_per_heterozygous_site
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64
clean
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78,095
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13.518251
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diploid_individual_haplotypes
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64
null
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3,725.082433
constant
28
70
2
multi_event
expansion|constant_clean|clean
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clean_constant_map
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log_time_bin_average
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50
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3,423.233333
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sim_00000071
71
train
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synthetic_heterogeneous
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50,122.663776
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sparse_flat_index_uint32
synthetic_heterogeneous
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null
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null
null
1,635
64
1,636
128
6,436,562
5,065,983
981
0.000032
0.00347
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1,335,792
79,490,276
diploid_pair_switch_per_heterozygous_site
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0.016817
64
mild_noise
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1,881,424
0
0
0
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null
5,764.710692
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diploid_pair_switch_per_heterozygous_site
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empirical_human_ne_template
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empirical_human_ne_template
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train
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per_bp_per_generation
cM_per_Mb
cM_per_Mb_to_per_bp_per_generation
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multi_event
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log10_Ne
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train
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sparse_flat_index_uint32
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mild_noise
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per_bp_per_generation
per_bp_per_generation
cM_per_Mb
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spectral_walk
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sim_00000083
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train
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sparse_flat_index_uint32
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per_bp_per_generation
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mild_noise
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chr9
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per_bp_per_generation
per_bp_per_generation
cM_per_Mb
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constant
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sim_00000084
84
train
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sparse_flat_index_uint32
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sim_00000085
85
train
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spectral_walk
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train
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sparse_flat_index_uint32
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spectral_walk
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sparse_flat_index_uint32
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diploid_pair_switch_per_heterozygous_site
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mild_noise
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diploid_individual_haplotypes
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constant_random_global
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literature_sawtooth
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random_global_mu_r
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piecewise_exponential_linear_time
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per_bp_per_generation
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empirical_human_ne_template
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train
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sparse_flat_index_uint32
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per_bp_per_generation
per_bp_per_generation
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diploid_pair_switch_per_heterozygous_site
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diploid_individual_haplotypes
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per_bp_per_generation
per_bp_per_generation
cM_per_Mb
cM_per_Mb_to_per_bp_per_generation
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bed_intervals
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empirical_slice
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constant
constant|empirical_slice|mild_noise
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shared_chromosomal_interval
chr3
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empirical_map_slice
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log_time_bin_average
log10_Ne
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none
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empirical_human_ne_template
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synthetic_heterogeneous
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diploid_pair_switch_per_heterozygous_site
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mild_noise
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0
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0.000002
0
null
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diploid_individual_haplotypes
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null
null
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null
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synthetic_heterogeneous
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empirical_human_ne_template
empirical_human_ne_template|synthetic_heterogeneous|mild_noise
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custom_heterogeneous
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log_time_bin_average
log10_Ne
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empirical_template
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physical_grid_exact_span
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empirical_human_ne_template
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empirical_inference_template_perturbed
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PHLaSH
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phlash_unified
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sim_00000096
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sparse_flat_index_uint32
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null
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null
null
null
null
null
null
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constant_random_global
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multi_event
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train
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null
null
null
null
null
null
null
null
2
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bottleneck
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sim_00000098
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train
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null
null
null
null
null
null
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null
null
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diploid_pair_switch_per_heterozygous_site
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mild_noise
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bottleneck
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null
null
null
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random_global_mu_r
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log_time_bin_average
log10_Ne
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null
null
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sim_00000099
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monotonic_change
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synthetic_heterogeneous
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sparse_flat_index_uint32
synthetic_heterogeneous
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null
null
null
null
null
null
null
null
null
null
null
635
64
636
128
146,746
160,008
620
0.00002
0.003911
0.007145
11,668
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diploid_pair_switch_per_heterozygous_site
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mild_noise
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null
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diploid_individual_haplotypes
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null
null
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synthetic_heterogeneous
48
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event_on_background
contraction|synthetic_heterogeneous|mild_noise
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null
null
null
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custom_heterogeneous
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log_time_bin_average
log10_Ne
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multiscale
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resolved_curve
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null
636
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2,805,737.564786
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physical_grid_exact_span
0
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0.33
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30,000
null
null
null
null
null
null
2,000
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294,364.269263
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physical_grid_exact_span
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null
null
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