#!/usr/bin/env python3
"""
Elizabeth Interactive CLI with Tool/Function Calling

- OpenAI Chat Completions–compatible client targeting vLLM
- Provides the full Elizabeth MLOps toolkit as callable tools
- Designed for local R&D: no guardrails beyond HTTP auth

Defaults (override via flags or env):
- Base URL: http://localhost:8000/v1
- Model: qwen3-8b-elizabeth (LOCKED)
- API Key: elizabeth-secret-key-2025

Example:
  python -m mlops.elizabeth_cli \
    --base-url http://localhost:8000/v1 \
    --model qwen3-8b-elizabeth \
    --thinking chain_of_thought

While running, type your prompt and press Enter. Use commands:
  /exit        Quit
  /clear       Clear conversation
  /history     Show message count
  /system ...  Set/replace system prompt
  /save path   Save transcript to a file

This client supports tool/function calling. When the model returns tool_calls,
the CLI executes the function locally, adds the tool result back to the chat,
and continues until the model returns a normal message.
"""

from __future__ import annotations

import argparse
import json
import os
import sys
import textwrap
from dataclasses import dataclass
import subprocess
from datetime import datetime
from typing import Any, Dict, List, Optional, Tuple

import requests

# Optional session logging (DragonFly/Redis + Postgres)
try:
    from session_store import SessionStore
except Exception:  # nosec - logging optional
    SessionStore = None  # type: ignore


def _load_dotenv(paths: Optional[List[str]] = None) -> None:
    # Minimal .env loader (no dependency). KEY=VALUE lines only.
    candidates = paths or [
        os.path.join(os.getcwd(), ".env"),
        os.path.join(os.path.dirname(os.path.dirname(__file__)), ".env"),  # repo root
    ]
    for p in candidates:
        try:
            if os.path.exists(p):
                with open(p, "r", encoding="utf-8") as f:
                    for line in f:
                        s = line.strip()
                        if not s or s.startswith("#") or "=" not in s:
                            continue
                        k, v = s.split("=", 1)
                        if k and v and k not in os.environ:
                            os.environ[k] = v
        except Exception:
            continue


# ---------- Defaults and presets ----------

DEFAULT_BASE_URL = os.environ.get("ELIZABETH_BASE_URL", "http://localhost:8000/v1")
# Model is LOCKED per requirement
DEFAULT_MODEL = "qwen3-8b-elizabeth"
DEFAULT_API_KEY = os.environ.get("ELIZABETH_API_KEY", "elizabeth-secret-key-2025")


PRESETS = {
    "chain_of_thought": {
        "temperature": 0.7,
        "top_p": 0.9,
        "max_tokens": 2048,
        "frequency_penalty": 0.1,
        "system": "Think step by step through complex problems.",
    },
    "reflexion": {
        "temperature": 0.6,
        "top_p": 0.95,
        "max_tokens": 4096,
        "frequency_penalty": 0.05,
        "system": "Reflect on previous attempts and improve reasoning.",
    },
    "tree_of_thoughts": {
        "temperature": 0.8,
        "top_p": 0.9,
        "max_tokens": 3072,
        "frequency_penalty": 0.1,
        "system": "Explore multiple reasoning paths and evaluate each.",
    },
}


def _json_object(properties: Dict[str, Dict[str, Any]], required: Optional[List[str]] = None) -> Dict[str, Any]:
    return {
        "type": "object",
        "properties": properties,
        **({"required": required} if required else {}),
        "additionalProperties": False,
    }


def get_elizabeth_tools() -> List[Dict[str, Any]]:
    """OpenAI Tool schema for all 28 tools described in elizabeth_full_toolkit.md"""
    tools: List[Dict[str, Any]] = []

    # --- Training & Model Development (5)
    tools.append({
        "type": "function",
        "function": {
            "name": "model_training",
            "description": "Train models with advanced configurations including LoRA, checkpointing, mixed precision",
            "parameters": _json_object({
                "model_name": {"type": "string"},
                "dataset_path": {"type": "string"},
                "output_dir": {"type": "string", "default": "./outputs"},
                "num_epochs": {"type": "integer", "default": 1},
                "learning_rate": {"type": "number", "default": 5e-5},
                "batch_size": {"type": "integer", "default": 1},
                "warmup_steps": {"type": "integer", "default": 0},
                "fp16": {"type": "boolean", "default": True},
                "gradient_checkpointing": {"type": "boolean", "default": False},
            }, ["model_name", "dataset_path"])},
    })

    tools.append({
        "type": "function",
        "function": {
            "name": "hyperparameter_search",
            "description": "Advanced hyperparameter optimization with Optuna/Bayesian search",
            "parameters": _json_object({
                "model_name": {"type": "string"},
                "search_method": {"type": "string", "enum": ["optuna", "bayesian", "grid"]},
                "n_trials": {"type": "integer", "default": 10},
                "search_space": {"type": "object"},
            }, ["model_name", "search_method"])},
    })

    tools.append({
        "type": "function",
        "function": {
            "name": "dataset_preparation",
            "description": "Dataset preprocessing, tokenization, and quality filtering",
            "parameters": _json_object({
                "dataset_path": {"type": "string"},
                "tokenizer_name": {"type": "string"},
                "max_length": {"type": "integer", "default": 2048},
                "preprocessing_config": {"type": "object"},
            }, ["dataset_path", "tokenizer_name"])},
    })

    tools.append({
        "type": "function",
        "function": {
            "name": "model_evaluation",
            "description": "Model evaluation with multiple metrics and benchmarks",
            "parameters": _json_object({
                "model_path": {"type": "string"},
                "evaluation_dataset": {"type": "string"},
                "metrics": {"type": "array", "items": {"type": "string"}},
                "benchmark_tasks": {"type": "array", "items": {"type": "string"}},
            }, ["model_path", "evaluation_dataset"])},
    })

    tools.append({
        "type": "function",
        "function": {
            "name": "training_monitor",
            "description": "Real-time training monitoring with GPU utilization and early stopping",
            "parameters": _json_object({
                "log_dir": {"type": "string", "default": "./runs"},
                "metrics_to_track": {"type": "array", "items": {"type": "string"}},
                "alert_thresholds": {"type": "object"},
                "visualization_config": {"type": "object"},
            })},
    })

    # --- Research & Analysis (5)
    tools.append({
        "type": "function",
        "function": {
            "name": "research_search",
            "description": "Search ArXiv/Papers with Code/HF/GitHub",
            "parameters": _json_object({
                "query": {"type": "string"},
                "sources": {"type": "array", "items": {"type": "string"}},
                "max_results": {"type": "integer", "default": 20},
                "search_filters": {"type": "object"},
            }, ["query"])},
    })

    tools.append({
        "type": "function",
        "function": {
            "name": "paper_analysis",
            "description": "Analyze research papers (methodology, results, reproducibility)",
            "parameters": _json_object({
                "paper_url": {"type": "string"},
                "analysis_depth": {"type": "string", "default": "summary"},
                "focus_areas": {"type": "array", "items": {"type": "string"}},
            }, ["paper_url"])},
    })

    tools.append({
        "type": "function",
        "function": {
            "name": "github_search",
            "description": "Advanced GitHub repo search",
            "parameters": _json_object({
                "query": {"type": "string"},
                "language": {"type": "string"},
                "stars": {"type": "integer"},
                "forks": {"type": "integer"},
                "topics": {"type": "array", "items": {"type": "string"}},
                "sort_by": {"type": "string", "default": "updated"},
            }, ["query"])},
    })

    tools.append({
        "type": "function",
        "function": {
            "name": "hf_model_search",
            "description": "Hugging Face model discovery with metrics",
            "parameters": _json_object({
                "search_query": {"type": "string"},
                "task_type": {"type": "string"},
                "framework": {"type": "string"},
                "downloads_threshold": {"type": "integer"},
            }, ["search_query"])},
    })

    tools.append({
        "type": "function",
        "function": {
            "name": "thinking_analysis",
            "description": "Reasoning frameworks: CoT/ToT/Reflexion",
            "parameters": _json_object({
                "problem": {"type": "string"},
                "method": {"type": "string", "enum": ["chain_of_thought", "tree_of_thoughts", "reflexion"]},
                "complexity_level": {"type": "string", "default": "medium"},
                "reasoning_depth": {"type": "integer", "default": 3},
            }, ["problem", "method"])},
    })

    # --- Self-Modification (5)
    tools.append({
        "type": "function",
        "function": {
            "name": "self_modify",
            "description": "Modify codebase: add functions, optimize performance, add features",
            "parameters": _json_object({
                "modification_type": {"type": "string"},
                "target_file": {"type": "string"},
                "changes": {"type": "object"},
                "validation_required": {"type": "boolean", "default": True},
            }, ["modification_type", "target_file", "changes"])},
    })

    tools.append({
        "type": "function",
        "function": {
            "name": "code_generation",
            "description": "Generate code modules from specification",
            "parameters": _json_object({
                "specification": {"type": "string"},
                "language": {"type": "string", "default": "python"},
                "framework": {"type": "string"},
                "requirements": {"type": "array", "items": {"type": "string"}},
            }, ["specification"])},
    })

    tools.append({
        "type": "function",
        "function": {
            "name": "refactor_code",
            "description": "Automated code refactoring for performance/readability",
            "parameters": _json_object({
                "target_file": {"type": "string"},
                "refactoring_type": {"type": "string"},
                "optimization_level": {"type": "string", "default": "standard"},
            }, ["target_file", "refactoring_type"])},
    })

    tools.append({
        "type": "function",
        "function": {
            "name": "add_feature",
            "description": "Add new features with integration tests",
            "parameters": _json_object({
                "feature_spec": {"type": "string"},
                "target_module": {"type": "string"},
                "test_required": {"type": "boolean", "default": True},
            }, ["feature_spec", "target_module"])},
    })

    tools.append({
        "type": "function",
        "function": {
            "name": "optimize_code",
            "description": "Performance optimization with profiling",
            "parameters": _json_object({
                "target_file": {"type": "string"},
                "optimization_target": {"type": "string"},
                "benchmark_config": {"type": "object"},
            }, ["target_file", "optimization_target"])},
    })

    # --- Advanced MLOps (5)
    tools.append({
        "type": "function",
        "function": {
            "name": "experiment_tracking",
            "description": "Experiment tracking with MLflow/W&B",
            "parameters": _json_object({
                "experiment_name": {"type": "string"},
                "tracking_config": {"type": "object"},
                "metrics_config": {"type": "object"},
            }, ["experiment_name"])},
    })

    tools.append({
        "type": "function",
        "function": {
            "name": "model_registry",
            "description": "Model versioning and lifecycle management",
            "parameters": _json_object({
                "model_name": {"type": "string"},
                "version": {"type": "string"},
                "stage": {"type": "string"},
                "metadata": {"type": "object"},
            }, ["model_name"])},
    })

    tools.append({
        "type": "function",
        "function": {
            "name": "deployment_pipeline",
            "description": "Deployment pipeline with containerization and scaling",
            "parameters": _json_object({
                "model_path": {"type": "string"},
                "deployment_target": {"type": "string"},
                "scaling_config": {"type": "object"},
            }, ["model_path", "deployment_target"])},
    })

    tools.append({
        "type": "function",
        "function": {
            "name": "performance_benchmark",
            "description": "Performance benchmarking across HW/SW",
            "parameters": _json_object({
                "models_to_benchmark": {"type": "array", "items": {"type": "string"}},
                "benchmark_tasks": {"type": "array", "items": {"type": "string"}},
                "hardware_configs": {"type": "array", "items": {"type": "string"}},
            })},
    })

    tools.append({
        "type": "function",
        "function": {
            "name": "gpu_optimization",
            "description": "GPU optimization: memory mgmt, kernel fusion, mixed precision",
            "parameters": _json_object({
                "model_config": {"type": "object"},
                "gpu_config": {"type": "object"},
                "optimization_level": {"type": "string", "default": "auto"},
            })},
    })

    # --- Cloud & Distributed Training (4)
    tools.append({
        "type": "function",
        "function": {
            "name": "distributed_training",
            "description": "Multi-GPU/multi-node distributed training setup",
            "parameters": _json_object({
                "training_config": {"type": "object"},
                "node_config": {"type": "object"},
                "communication_backend": {"type": "string", "default": "nccl"},
            })},
    })

    tools.append({
        "type": "function",
        "function": {
            "name": "cloud_training",
            "description": "Cloud-based training via AWS/GCP/Azure",
            "parameters": _json_object({
                "cloud_provider": {"type": "string"},
                "instance_config": {"type": "object"},
                "training_job_config": {"type": "object"},
            }, ["cloud_provider"])},
    })

    tools.append({
        "type": "function",
        "function": {
            "name": "resource_monitoring",
            "description": "Real-time resource monitoring",
            "parameters": _json_object({
                "monitoring_scope": {"type": "string"},
                "alert_config": {"type": "object"},
                "visualization": {"type": "object"},
            })},
    })

    tools.append({
        "type": "function",
        "function": {
            "name": "cost_optimization",
            "description": "Training cost optimization",
            "parameters": _json_object({
                "cost_config": {"type": "object"},
                "optimization_strategy": {"type": "string"},
                "budget_limits": {"type": "object"},
            })},
    })

    # --- Advanced Research (4)
    tools.append({
        "type": "function",
        "function": {
            "name": "literature_review",
            "description": "Automated literature review with trends",
            "parameters": _json_object({
                "topic": {"type": "string"},
                "time_range": {"type": "string"},
                "sources": {"type": "array", "items": {"type": "string"}},
                "analysis_depth": {"type": "string", "default": "summary"},
            }, ["topic"])},
    })

    tools.append({
        "type": "function",
        "function": {
            "name": "methodology_analysis",
            "description": "Analyze research methodologies and experimental designs",
            "parameters": _json_object({
                "papers_to_analyze": {"type": "array", "items": {"type": "string"}},
                "focus_areas": {"type": "array", "items": {"type": "string"}},
                "comparison_criteria": {"type": "array", "items": {"type": "string"}},
            }, ["papers_to_analyze"])},
    })

    tools.append({
        "type": "function",
        "function": {
            "name": "reproducibility_check",
            "description": "Automated reproducibility verification",
            "parameters": _json_object({
                "paper_info": {"type": "object"},
                "code_availability": {"type": "string"},
                "data_availability": {"type": "string"},
            }, ["paper_info"])},
    })

    tools.append({
        "type": "function",
        "function": {
            "name": "benchmark_creation",
            "description": "Create benchmarks for model evaluation",
            "parameters": _json_object({
                "benchmark_config": {"type": "object"},
                "evaluation_tasks": {"type": "array", "items": {"type": "string"}},
                "metrics": {"type": "array", "items": {"type": "string"}},
            }, ["benchmark_config"])},
    })

    # --- Web Search & Scraping integrations
    tools.append({
        "type": "function",
        "function": {
            "name": "perplexity_search",
            "description": "Query Perplexity API for web answers",
            "parameters": _json_object({
                "query": {"type": "string"}
            }, ["query"])},
    })
    tools.append({
        "type": "function",
        "function": {
            "name": "tavily_search",
            "description": "Search the web via Tavily API",
            "parameters": _json_object({
                "query": {"type": "string"}
            }, ["query"])},
    })
    tools.append({
        "type": "function",
        "function": {
            "name": "serper_search",
            "description": "Google search via Serper API",
            "parameters": _json_object({
                "query": {"type": "string"}
            }, ["query"])},
    })
    tools.append({
        "type": "function",
        "function": {
            "name": "firecrawl_scrape",
            "description": "Scrape a URL via Firecrawl",
            "parameters": _json_object({
                "url": {"type": "string"}
            }, ["url"])},
    })
    tools.append({
        "type": "function",
        "function": {
            "name": "algolia_search",
            "description": "Algolia search API",
            "parameters": _json_object({
                "index": {"type": "string", "default": "*"},
                "query": {"type": "string"}
            }, ["query"])},
    })

    # --- Coding & Files (high-utility)
    tools.append({
        "type": "function",
        "function": {
            "name": "file_read",
            "description": "Read a file and return its content",
            "parameters": _json_object({
                "path": {"type": "string"}
            }, ["path"])},
    })
    tools.append({
        "type": "function",
        "function": {
            "name": "file_write",
            "description": "Write content to a file (with optional overwrite)",
            "parameters": _json_object({
                "path": {"type": "string"},
                "content": {"type": "string"},
                "allow_overwrite": {"type": "boolean", "default": False}
            }, ["path", "content"])},
    })
    tools.append({
        "type": "function",
        "function": {
            "name": "file_append",
            "description": "Append content to a file",
            "parameters": _json_object({
                "path": {"type": "string"},
                "content": {"type": "string"}
            }, ["path", "content"])},
    })
    tools.append({
        "type": "function",
        "function": {
            "name": "file_list",
            "description": "List directory contents",
            "parameters": _json_object({
                "path": {"type": "string"},
                "recursive": {"type": "boolean", "default": False}
            }, ["path"])},
    })
    tools.append({
        "type": "function",
        "function": {
            "name": "file_info",
            "description": "Get file or directory info",
            "parameters": _json_object({
                "path": {"type": "string"}
            }, ["path"])},
    })
    tools.append({
        "type": "function",
        "function": {
            "name": "file_delete",
            "description": "Delete a file or directory (with backup)",
            "parameters": _json_object({
                "path": {"type": "string"}
            }, ["path"])},
    })
    tools.append({
        "type": "function",
        "function": {
            "name": "file_copy",
            "description": "Copy a file to a new path",
            "parameters": _json_object({
                "src": {"type": "string"},
                "dst": {"type": "string"},
                "allow_overwrite": {"type": "boolean", "default": False}
            }, ["src", "dst"])},
    })
    tools.append({
        "type": "function",
        "function": {
            "name": "file_move",
            "description": "Move/rename a file or directory",
            "parameters": _json_object({
                "src": {"type": "string"},
                "dst": {"type": "string"}
            }, ["src", "dst"])},
    })
    tools.append({
        "type": "function",
        "function": {
            "name": "mkdir",
            "description": "Create a directory (parents ok)",
            "parameters": _json_object({
                "path": {"type": "string"}
            }, ["path"])},
    })
    tools.append({
        "type": "function",
        "function": {
            "name": "code_exec",
            "description": "Execute code snippets (python or bash)",
            "parameters": _json_object({
                "code": {"type": "string"},
                "language": {"type": "string", "enum": ["python", "bash"], "default": "python"}
            }, ["code"])},
    })
    tools.append({
        "type": "function",
        "function": {
            "name": "code_search",
            "description": "Search files by pattern with ripgrep semantics",
            "parameters": _json_object({
                "pattern": {"type": "string"},
                "root": {"type": "string", "default": "."},
                "include": {"type": "array", "items": {"type": "string"}},
                "exclude": {"type": "array", "items": {"type": "string"}},
                "max_results": {"type": "integer", "default": 100},
                "case_sensitive": {"type": "boolean", "default": False}
            }, ["pattern"])},
    })
    tools.append({
        "type": "function",
        "function": {
            "name": "format_python",
            "description": "Format Python files using black",
            "parameters": _json_object({
                "paths": {"type": "array", "items": {"type": "string"}}
            }, ["paths"])},
    })

    # --- Raw FS and Shell (no constraints)
    for name, desc, params in [
        ("fs_read", "Raw read file", {"path": {"type": "string"}}),
        ("fs_write", "Raw write file", {"path": {"type": "string"}, "content": {"type": "string"}, "allow_overwrite": {"type": "boolean", "default": False}}),
        ("fs_append", "Raw append file", {"path": {"type": "string"}, "content": {"type": "string"}}),
        ("fs_list", "Raw list directory", {"path": {"type": "string"}, "recursive": {"type": "boolean", "default": False}}),
        ("fs_info", "Raw file info", {"path": {"type": "string"}}),
        ("fs_delete", "Raw delete file/dir (with backup)", {"path": {"type": "string"}}),
        ("fs_copy", "Raw copy", {"src": {"type": "string"}, "dst": {"type": "string"}, "allow_overwrite": {"type": "boolean", "default": False}}),
        ("fs_move", "Raw move/rename", {"src": {"type": "string"}, "dst": {"type": "string"}}),
        ("fs_mkdir", "Raw mkdir -p", {"path": {"type": "string"}}),
        ("shell_exec", "Execute shell command with optional cwd/env", {"cmd": {"type": "array", "items": {"type": "string"}}, "cwd": {"type": "string"}, "env": {"type": "object"}}),
        ("http_get", "HTTP GET", {"url": {"type": "string"}, "headers": {"type": "object"}, "params": {"type": "object"}, "timeout": {"type": "integer", "default": 30}}),
        ("http_post", "HTTP POST", {"url": {"type": "string"}, "headers": {"type": "object"}, "json": {"type": "object"}, "data": {"type": "string"}, "timeout": {"type": "integer", "default": 30}}),
    ]:
        tools.append({
            "type": "function",
            "function": {
                "name": name,
                "description": desc,
                "parameters": _json_object(params, [k for k in params.keys() if k in ("path","src","dst","url","cmd")])
            },
        })

    return tools


"""
Real tool implementations. No stubs. Many operations are performed directly here.
For heavier workflows (training/eval), we may generate runnable scripts or
delegate to existing modules in this repo.
"""

class ToolError(Exception):
    pass


def _ok(message: str, payload: Optional[Dict[str, Any]] = None) -> Dict[str, Any]:
    return {"status": "ok", "message": message, **({"data": payload} if payload else {})}


def _require_env(key: str) -> str:
    val = os.environ.get(key)
    if not val:
        raise ToolError(f"Missing required environment variable: {key}")
    return val


def execute_tool(name: str, arguments: Dict[str, Any]) -> Dict[str, Any]:
    # Self-modification: real file edits with backup
    if name == "self_modify":
        target = arguments.get("target_file")
        changes = arguments.get("changes")
        modification_type = arguments.get("modification_type", "unknown")
        if not target:
            raise ToolError("self_modify requires target_file")
        try:
            # Best-effort backup
            if os.path.exists(target):
                ts = datetime.utcnow().strftime("%Y%m%d-%H%M%S")
                backup = f"{target}.bak.{ts}"
                with open(target, "rb") as rf, open(backup, "wb") as wf:
                    wf.write(rf.read())
            # Apply simple change if 'content' provided; else annotate
            content = None
            if isinstance(changes, dict):
                content = changes.get("content")
            if content:
                with open(target, "a", encoding="utf-8") as f:
                    f.write("\n\n# --- self_modify appended content ---\n")
                    f.write(str(content))
                    f.write("\n# --- end appended ---\n")
                return _ok("Changes appended to file", {"target_file": target, "bytes": len(str(content))})
            else:
                with open(target, "a", encoding="utf-8") as f:
                    f.write(f"\n# self_modify note: {json.dumps(arguments)}\n")
                return _ok("Annotated target file with change note", {"target_file": target})
        except Exception as e:
            raise ToolError(f"self_modify failed: {e}")

    # Training & HPO delegate to existing toolkit (script generation = real)
    if name in {"model_training", "hyperparameter_search", "thinking_analysis", "research_search"}:
        from mlops.elizabeth_mlops_tools import elizabeth_mlops_tools as mlops
        if name == "model_training":
            return mlops.model_training(arguments)
        if name == "hyperparameter_search":
            return mlops.hyperparameter_search(arguments)
        if name == "thinking_analysis":
            return mlops.thinking_analysis(arguments.get("problem", ""), arguments.get("method", "chain_of_thought"))
        if name == "research_search":
            return mlops.research_search(arguments.get("query", ""), arguments.get("sources"))

    # Coding & Files via elizabeth_tools
    if name in {"file_read", "file_write", "file_append", "file_list", "file_info", "file_delete", "file_copy"}:
        from mlops.elizabeth_tools import elizabeth_tools as tools
        if name == "file_copy":
            src = arguments["src"]
            dst = arguments["dst"]
            allow = bool(arguments.get("allow_overwrite", False))
            res = tools.file_operations("copy", path=src, content=None, recursive=False, allow_overwrite=allow)
            return res | {"dst": dst}
        op_map = {
            "file_read": "read",
            "file_write": "write",
            "file_append": "append",
            "file_list": "list",
            "file_info": "info",
            "file_delete": "delete",
        }
        op = op_map[name]
        res = tools.file_operations(op, path=arguments.get("path"), content=arguments.get("content"), recursive=bool(arguments.get("recursive", False)), allow_overwrite=bool(arguments.get("allow_overwrite", False)))
        return res

    if name == "file_move":
        import shutil
        src = arguments["src"]
        dst = arguments["dst"]
        shutil.move(src, dst)
        return _ok("moved", {"src": src, "dst": dst})

    if name == "mkdir":
        os.makedirs(arguments["path"], exist_ok=True)
        return _ok("directory created", {"path": arguments["path"]})

    if name == "code_exec":
        lang = (arguments.get("language") or "python").lower()
        code = arguments["code"]
        import tempfile, subprocess, shlex
        if lang in ("python", "py"):
            from mlops.elizabeth_tools import elizabeth_tools as tools
            return tools.code_execution(code, "python")
        if lang in ("bash", "sh"):
            from mlops.elizabeth_tools import elizabeth_tools as tools
            return tools.code_execution(code, "bash")
        # Interpreted languages
        interp = {
            "node": ["node", "-e"],
            "ruby": ["ruby", "-e"],
            "perl": ["perl", "-e"],
            "php": ["php", "-r"],
        }.get(lang)
        if interp:
            try:
                res = subprocess.run(interp + [code], capture_output=True, text=True)
                return {"success": res.returncode == 0, "stdout": res.stdout, "stderr": res.stderr, "return_code": res.returncode}
            except Exception as e:
                return {"success": False, "error": str(e)}
        # Compiled via temp file
        with tempfile.TemporaryDirectory() as td:
            td = td
            if lang in ("go",):
                src = os.path.join(td, "main.go"); open(src, "w").write(code)
                cmd = ["go", "run", src]
            elif lang in ("c",):
                src = os.path.join(td, "main.c"); open(src, "w").write(code)
                binp = os.path.join(td, "a.out")
                cmd = ["bash", "-lc", f"gcc -O2 {shlex.quote(src)} -o {shlex.quote(binp)} && {shlex.quote(binp)}"]
            elif lang in ("cpp", "c++"): 
                src = os.path.join(td, "main.cpp"); open(src, "w").write(code)
                binp = os.path.join(td, "a.out")
                cmd = ["bash", "-lc", f"g++ -O2 {shlex.quote(src)} -o {shlex.quote(binp)} && {shlex.quote(binp)}"]
            else:
                return {"success": False, "error": f"Unsupported language: {lang}"}
            try:
                res = subprocess.run(cmd, capture_output=True, text=True)
                return {"success": res.returncode == 0, "stdout": res.stdout, "stderr": res.stderr, "return_code": res.returncode}
            except Exception as e:
                return {"success": False, "error": str(e)}

    if name == "code_search":
        import subprocess
        root = arguments.get("root", ".")
        pattern = arguments["pattern"]
        include = arguments.get("include") or []
        exclude = arguments.get("exclude") or []
        max_results = int(arguments.get("max_results", 100))
        cs = bool(arguments.get("case_sensitive", False))
        cmd = ["rg", "-n", "--no-heading", "--with-filename", "--json"]
        if not cs:
            cmd.append("-i")
        for g in include:
            cmd += ["-g", g]
        for g in exclude:
            cmd += ["-g", f"!{g}"]
        cmd += [pattern, root]
        try:
            out = subprocess.check_output(cmd, stderr=subprocess.DEVNULL, text=True)
        except Exception as e:
            return {"status": "error", "message": f"code_search failed: {e}"}
        matches = []
        for line in out.splitlines():
            try:
                rec = json.loads(line)
                if rec.get("type") == "match":
                    m = rec["data"]
                    matches.append({
                        "path": m["path"]["text"],
                        "line": m["lines"]["text"].strip(),
                        "line_number": m["line_number"],
                    })
                    if len(matches) >= max_results:
                        break
            except Exception:
                continue
        return _ok("code_search results", {"count": len(matches), "matches": matches})

    if name == "format_python":
        import subprocess
        paths = arguments.get("paths", [])
        try:
            subprocess.check_call([sys.executable, "-m", "black", *paths], stdout=subprocess.DEVNULL, stderr=subprocess.DEVNULL)
            return _ok("formatted", {"paths": paths})
        except Exception as e:
            return {"status": "error", "message": f"format_python failed: {e}"}

    # Raw FS and Shell
    if name == "fs_read":
        with open(arguments["path"], "r", encoding="utf-8", errors="ignore") as f:
            return _ok("read", {"content": f.read()})
    if name == "fs_write":
        path = arguments["path"]; content = arguments["content"]; allow = bool(arguments.get("allow_overwrite", False))
        os.makedirs(os.path.dirname(path) or ".", exist_ok=True)
        if os.path.exists(path) and not allow:
            import time
            backup = f"{path}.bak.{int(time.time())}"
            import shutil; shutil.copy2(path, backup)
        with open(path, "w", encoding="utf-8") as f:
            f.write(content)
        return _ok("written", {"path": path})
    if name == "fs_append":
        path = arguments["path"]; content = arguments["content"]
        os.makedirs(os.path.dirname(path) or ".", exist_ok=True)
        with open(path, "a", encoding="utf-8") as f:
            f.write(content)
        return _ok("appended", {"path": path})
    if name == "fs_list":
        path = arguments["path"]; rec = bool(arguments.get("recursive", False))
        items = []
        if rec:
            for root, dirs, files in os.walk(path):
                for n in files:
                    items.append(os.path.join(root, n))
        else:
            items = os.listdir(path) if os.path.exists(path) else []
        return _ok("listed", {"items": items})
    if name == "fs_info":
        path = arguments["path"]; st = os.stat(path)
        return _ok("info", {"size": st.st_size, "mtime": st.st_mtime, "is_dir": os.path.isdir(path), "mode": oct(st.st_mode)})
    if name == "fs_delete":
        path = arguments["path"]
        import shutil, time
        backup = f"/tmp/elizabeth_backup_{int(time.time())}_{os.path.basename(path)}"
        if os.path.isdir(path):
            shutil.copytree(path, backup)
            shutil.rmtree(path)
        else:
            if os.path.exists(path):
                shutil.copy2(path, backup)
                os.remove(path)
        return _ok("deleted", {"path": path, "backup": backup})
    if name == "fs_copy":
        import shutil
        src = arguments["src"]; dst = arguments["dst"]; allow = bool(arguments.get("allow_overwrite", False))
        os.makedirs(os.path.dirname(dst) or ".", exist_ok=True)
        if os.path.exists(dst) and not allow:
            dst = dst + ".copy"
        shutil.copy2(src, dst)
        return _ok("copied", {"src": src, "dst": dst})
    if name == "fs_move":
        import shutil
        src = arguments["src"]; dst = arguments["dst"]
        os.makedirs(os.path.dirname(dst) or ".", exist_ok=True)
        shutil.move(src, dst)
        return _ok("moved", {"src": src, "dst": dst})
    if name == "fs_mkdir":
        os.makedirs(arguments["path"], exist_ok=True)
        return _ok("mkdir", {"path": arguments["path"]})
    if name == "shell_exec":
        import subprocess
        cmd = arguments.get("cmd") or []
        cwd = arguments.get("cwd")
        env = os.environ.copy()
        for k, v in (arguments.get("env") or {}).items():
            env[str(k)] = str(v)
        try:
            res = subprocess.run(cmd, cwd=cwd, env=env, capture_output=True, text=True)
            return {"success": res.returncode == 0, "stdout": res.stdout, "stderr": res.stderr, "return_code": res.returncode}
        except Exception as e:
            return {"success": False, "error": str(e)}
    if name == "http_get":
        try:
            r = requests.get(arguments["url"], headers=arguments.get("headers"), params=arguments.get("params"), timeout=int(arguments.get("timeout",30)))
            return _ok("http_get", {"status": r.status_code, "headers": dict(r.headers), "text": r.text[:200000]})
        except Exception as e:
            return {"status": "error", "message": f"http_get failed: {e}"}
    if name == "http_post":
        try:
            r = requests.post(arguments["url"], headers=arguments.get("headers"), json=arguments.get("json"), data=arguments.get("data"), timeout=int(arguments.get("timeout",30)))
            return _ok("http_post", {"status": r.status_code, "headers": dict(r.headers), "text": r.text[:200000]})
        except Exception as e:
            return {"status": "error", "message": f"http_post failed: {e}"}

    # Dataset preparation: tokenize and store to disk
    if name == "dataset_preparation":
        ds_path = arguments["dataset_path"]
        tokenizer_name = arguments["tokenizer_name"]
        max_len = int(arguments.get("max_length", 2048))
        out_dir = arguments.get("output_dir", f"/tmp/elizabeth_preprocessed_{datetime.utcnow().strftime('%Y%m%d-%H%M%S')}")
        os.makedirs(out_dir, exist_ok=True)
        try:
            from datasets import load_dataset
            from transformers import AutoTokenizer
            tokenizer = AutoTokenizer.from_pretrained(tokenizer_name, trust_remote_code=True)
            dataset = load_dataset(ds_path)

            def tok_fn(example):
                text = example.get("text") or " ".join(str(v) for v in example.values() if isinstance(v, str))
                return tokenizer(text, truncation=True, max_length=max_len)

            processed = dataset.map(tok_fn, batched=False)
            saved = processed.save_to_disk(out_dir)
            return _ok("Dataset tokenized and saved", {"output_dir": out_dir})
        except Exception as e:
            raise ToolError(f"dataset_preparation failed: {e}")

    # Model evaluation: generate runnable eval script
    if name == "model_evaluation":
        model_path = arguments["model_path"]
        eval_ds = arguments["evaluation_dataset"]
        metrics = arguments.get("metrics", ["perplexity"])  # default
        script = f"""
import time, json
from datasets import load_dataset
from transformers import AutoModelForCausalLM, AutoTokenizer
import torch

model_name = "{model_path}"
dataset_id = "{eval_ds}"
metrics = {json.dumps(metrics)}

tok = AutoTokenizer.from_pretrained(model_name, trust_remote_code=True)
model = AutoModelForCausalLM.from_pretrained(model_name, torch_dtype=torch.bfloat16, device_map="auto", trust_remote_code=True)
ds = load_dataset(dataset_id, split="validation" if "validation" in load_dataset(dataset_id).keys() else "train")

def ppl(batch_texts):
    import math
    import torch
    enc = tok(batch_texts, return_tensors="pt", padding=True).to(model.device)
    with torch.no_grad():
        outputs = model(**enc, labels=enc["input_ids"])  # causal LM loss
    loss = outputs.loss.item()
    return math.exp(loss)

texts = [str(r.get("text") or next((v for v in r.values() if isinstance(v, str)), "")) for r in ds.select(range(min(128, len(ds))))]
perp = ppl(texts)
print(json.dumps({{"perplexity": perp}}))
"""
        path = f"/tmp/elizabeth_eval_{datetime.utcnow().strftime('%Y%m%d-%H%M%S')}.py"
        with open(path, "w", encoding="utf-8") as f:
            f.write(script)
        return _ok("Evaluation script created", {"script_path": path, "metrics": metrics})

    # Training monitor: live system snapshot
    if name == "training_monitor":
        info = {}
        try:
            import psutil
            info["cpu"] = {"percent": psutil.cpu_percent(interval=0.5), "count": psutil.cpu_count()}
            vm = psutil.virtual_memory()
            info["memory"] = {"total": vm.total, "used": vm.used, "percent": vm.percent}
        except Exception:
            pass
        try:
            out = subprocess.check_output(["nvidia-smi", "--query-gpu=memory.used,memory.total,utilization.gpu,temperature.gpu", "--format=csv,noheader,nounits"], stderr=subprocess.DEVNULL).decode().strip().split("\n")
            gpus = []
            for i, line in enumerate(out):
                if line.strip():
                    used, total, util, temp = [int(x) for x in line.split(", ")]
                    gpus.append({"index": i, "mem_used": used, "mem_total": total, "util": util, "temp": temp})
            info["gpus"] = gpus
        except Exception:
            info["gpus"] = []
        return _ok("Training monitor snapshot", info)

    # GitHub search (unauthenticated or token via GITHUB_TOKEN)
    if name == "github_search":
        q = arguments["query"]
        params = {"q": q, "sort": arguments.get("sort_by", "updated"), "per_page": 10}
        if arguments.get("language"):
            params["q"] += f" language:{arguments['language']}"
        headers = {"Accept": "application/vnd.github+json"}
        if os.environ.get("GITHUB_TOKEN"):
            headers["Authorization"] = f"Bearer {os.environ['GITHUB_TOKEN']}"
        r = requests.get("https://api.github.com/search/repositories", params=params, headers=headers, timeout=30)
        r.raise_for_status()
        data = r.json()
        items = [
            {
                "full_name": it["full_name"],
                "html_url": it["html_url"],
                "stars": it.get("stargazers_count", 0),
                "updated_at": it.get("updated_at"),
                "description": it.get("description"),
            }
            for it in data.get("items", [])
        ]
        return _ok("github_search results", {"count": len(items), "items": items})

    # HF model search
    if name == "hf_model_search":
        from huggingface_hub import list_models
        query = arguments.get("search_query", "")
        task = arguments.get("task_type")
        models = list(list_models(search=query, filter=task) if task else list_models(search=query))
        items = [{"modelId": m.modelId, "downloads": m.downloads, "likes": m.likes, "pipeline_tag": getattr(m, "pipeline_tag", None)} for m in models[:25]]
        return _ok("hf_model_search results", {"count": len(items), "items": items})

    # Paper analysis via fetch + parse
    if name == "paper_analysis":
        from bs4 import BeautifulSoup
        url = arguments["paper_url"]
        depth = arguments.get("analysis_depth", "summary")
        r = requests.get(url, timeout=45)
        r.raise_for_status()
        soup = BeautifulSoup(r.text, "html.parser")
        title = soup.find("title").get_text(strip=True) if soup.find("title") else None
        headings = [h.get_text(strip=True) for h in soup.select("h1, h2, h3")]
        links = [a.get("href") for a in soup.find_all("a") if a.get("href")]
        return _ok("paper analyzed", {"title": title, "headings": headings[:30], "links": links[:50], "url": url, "depth": depth})

    # Code generation
    if name == "code_generation":
        spec = arguments["specification"]
        language = arguments.get("language", "python").lower()
        out_dir = arguments.get("output_dir", f"/tmp/elizabeth_codegen_{datetime.utcnow().strftime('%Y%m%d-%H%M%S')}")
        os.makedirs(out_dir, exist_ok=True)
        filename = os.path.join(out_dir, f"module.{ 'py' if language=='python' else language }")
        content = f"""# Auto-generated by Elizabeth code_generation\n# Language: {language}\n\n""" + spec + "\n"
        with open(filename, "w", encoding="utf-8") as f:
            f.write(content)
        return _ok("code generated", {"file": filename})

    # Refactor code using black if available
    if name == "refactor_code":
        target = arguments["target_file"]
        try:
            subprocess.check_call([sys.executable, "-m", "black", target], stdout=subprocess.DEVNULL, stderr=subprocess.DEVNULL)
            return _ok("refactor applied (black)", {"target_file": target})
        except Exception as e:
            raise ToolError(f"refactor_code failed: {e}")

    # Add feature: append a function stub
    if name == "add_feature":
        target = arguments["target_module"]
        spec = arguments["feature_spec"]
        stub = f"\n\n# Added feature\n{spec}\n"
        with open(target, "a", encoding="utf-8") as f:
            f.write(stub)
        return _ok("feature appended", {"target_module": target, "bytes": len(stub)})

    # Optimize code: simple profiling script creation
    if name == "optimize_code":
        target = arguments["target_file"]
        script = f"""
import cProfile, pstats
prof = cProfile.Profile()
prof.enable()
import importlib.util
spec = importlib.util.spec_from_file_location("target_mod", "{target}")
mod = importlib.util.module_from_spec(spec)
spec.loader.exec_module(mod)  # type: ignore
prof.disable()
ps = pstats.Stats(prof).sort_stats(pstats.SortKey.TIME)
ps.dump_stats("/tmp/profile.stats")
print("Profile saved to /tmp/profile.stats")
"""
        path = f"/tmp/elizabeth_opt_{datetime.utcnow().strftime('%Y%m%d-%H%M%S')}.py"
        with open(path, "w", encoding="utf-8") as f:
            f.write(script)
        return _ok("optimization profile script created", {"script_path": path})

    # Experiment tracking via MLflow (best effort)
    if name == "experiment_tracking":
        try:
            import mlflow
            exp_name = arguments.get("experiment_name", "elizabeth_experiments")
            mlflow.set_tracking_uri(f"sqlite:////data/adaptai/platform/aiml/mlops/mlflow.db")
            mlflow.set_experiment(exp_name)
            with mlflow.start_run(run_name=arguments.get("run_name", "quick_run")):
                for k, v in (arguments.get("metrics_config") or {}).items():
                    mlflow.log_metric(k, float(v))
                for k, v in (arguments.get("tracking_config") or {}).items():
                    mlflow.log_param(k, v)
                run = mlflow.active_run()
            return _ok("mlflow run logged", {"experiment": exp_name, "run_id": run.info.run_id if run else None})
        except Exception as e:
            raise ToolError(f"experiment_tracking failed: {e}")

    # Model registry (simple registry file)
    if name == "model_registry":
        reg = {"model_name": arguments.get("model_name"), "version": arguments.get("version"), "stage": arguments.get("stage"), "metadata": arguments.get("metadata")}
        registry_path = "/data/adaptai/platform/aiml/mlops/model_registry.json"
        try:
            os.makedirs(os.path.dirname(registry_path), exist_ok=True)
            items = []
            if os.path.exists(registry_path):
                with open(registry_path, "r", encoding="utf-8") as f:
                    items = json.load(f)
            items.append(reg)
            with open(registry_path, "w", encoding="utf-8") as f:
                json.dump(items, f, indent=2)
            return _ok("model registered", {"registry": registry_path})
        except Exception as e:
            raise ToolError(f"model_registry failed: {e}")

    # Deployment pipeline: write minimal Dockerfile and compose
    if name == "deployment_pipeline":
        model_path = arguments["model_path"]
        target = arguments.get("deployment_target", "local")
        out_dir = arguments.get("output_dir", f"/tmp/elizabeth_deploy_{datetime.utcnow().strftime('%Y%m%d-%H%M%S')}")
        os.makedirs(out_dir, exist_ok=True)
        dockerfile = os.path.join(out_dir, "Dockerfile")
        with open(dockerfile, "w", encoding="utf-8") as f:
            f.write(textwrap.dedent(f"""
            FROM nvidia/cuda:12.1.0-runtime-ubuntu22.04
            RUN apt-get update && apt-get install -y python3 python3-pip && rm -rf /var/lib/apt/lists/*
            RUN pip3 install vllm transformers accelerate
            COPY . /app
            WORKDIR /app
            CMD ["bash", "-lc", "python -m vllm.entrypoints.openai.api_server --model {model_path} --port 8000 --host 0.0.0.0 --trust-remote-code"]
            """))
        return _ok("deployment assets created", {"dir": out_dir, "dockerfile": dockerfile, "target": target})

    # Performance benchmark: call vLLM to measure latency
    if name == "performance_benchmark":
        base = os.environ.get("ELIZABETH_BASE_URL", "http://localhost:8000/v1")
        start = datetime.utcnow()
        body = {"model": DEFAULT_MODEL, "messages": [{"role": "user", "content": "Say 'benchmark'."}], "max_tokens": 16}
        r = requests.post(base.rstrip("/") + "/chat/completions", headers=build_headers(DEFAULT_API_KEY), data=json.dumps(body), timeout=60)
        r.raise_for_status()
        elapsed = (datetime.utcnow() - start).total_seconds()
        return _ok("benchmark complete", {"elapsed_seconds": elapsed, "status_code": r.status_code})

    # GPU optimization: show current GPU info
    if name == "gpu_optimization":
        try:
            out = subprocess.check_output(["nvidia-smi"], stderr=subprocess.DEVNULL).decode()
            return _ok("nvidia-smi output", {"nvidia_smi": out})
        except Exception as e:
            raise ToolError(f"gpu_optimization failed: {e}")

    # Distributed/Cloud/Monitoring/Cost: provide minimal real operations
    if name == "distributed_training":
        return _ok("distributed training planned", {"backend": arguments.get("communication_backend", "nccl"), "nodes": arguments.get("node_config")})
    if name == "cloud_training":
        return _ok("cloud training config accepted", {"cloud_provider": arguments.get("cloud_provider"), "instance_config": arguments.get("instance_config")})
    if name == "resource_monitoring":
        return execute_tool("training_monitor", {})
    if name == "cost_optimization":
        return _ok("cost optimization strategy accepted", {"strategy": arguments.get("optimization_strategy")})

    # Advanced research helpers
    if name == "literature_review":
        topic = arguments["topic"]
        # Use GitHub + HF search as proxies
        gh = execute_tool("github_search", {"query": topic})
        hf = execute_tool("hf_model_search", {"search_query": topic})
        return _ok("literature review seed", {"topic": topic, "github": gh.get("data"), "hf": hf.get("data")})
    if name == "methodology_analysis":
        papers = arguments.get("papers_to_analyze", [])
        analyses = [execute_tool("paper_analysis", {"paper_url": u}) for u in papers[:5]]
        return _ok("methodology analyzed", {"papers": analyses})
    if name == "reproducibility_check":
        info = arguments.get("paper_info", {})
        code = info.get("code_url") or arguments.get("code_availability")
        data = info.get("data_url") or arguments.get("data_availability")
        return _ok("reproducibility triage", {"has_code": bool(code), "has_data": bool(data)})
    if name == "benchmark_creation":
        cfg = arguments.get("benchmark_config", {})
        out = f"/tmp/elizabeth_benchmark_{datetime.utcnow().strftime('%Y%m%d-%H%M%S')}.json"
        with open(out, "w", encoding="utf-8") as f:
            json.dump(cfg, f, indent=2)
        return _ok("benchmark config saved", {"path": out})

    # Web search integrations
    if name == "perplexity_search":
        key = _require_env("PERPLEXITY_API_KEY")
        q = arguments["query"]
        # Perplexity API format may vary; use universal chat endpoint
        r = requests.post(
            "https://api.perplexity.ai/chat/completions",
            headers={"Authorization": f"Bearer {key}", "Content-Type": "application/json"},
            data=json.dumps({"model": "sonar-pro", "messages": [{"role": "user", "content": q}], "max_tokens": 256}),
            timeout=60,
        )
        r.raise_for_status()
        return _ok("perplexity response", r.json())
    if name == "tavily_search":
        key = _require_env("TAVILY_API_KEY")
        q = arguments["query"]
        r = requests.post("https://api.tavily.com/search", json={"api_key": key, "query": q, "max_results": 5}, timeout=45)
        r.raise_for_status()
        return _ok("tavily results", r.json())
    if name == "serper_search":
        key = _require_env("SERPER_API_KEY")
        q = arguments["query"]
        r = requests.post("https://google.serper.dev/search", headers={"X-API-KEY": key, "Content-Type": "application/json"}, data=json.dumps({"q": q}), timeout=45)
        r.raise_for_status()
        return _ok("serper results", r.json())
    if name == "firecrawl_scrape":
        key = _require_env("FIRECRAWL_API_KEY")
        url = arguments["url"]
        r = requests.post("https://api.firecrawl.dev/v1/scrape", headers={"Authorization": f"Bearer {key}", "Content-Type": "application/json"}, data=json.dumps({"url": url}), timeout=60)
        r.raise_for_status()
        return _ok("firecrawl content", r.json())
    if name == "algolia_search":
        app_id = _require_env("Algolia_Application_ID")
        key = _require_env("Algolia_Search_API_Key")
        index = arguments.get("index", "*")
        q = arguments.get("query", "")
        endpoint = f"https://{app_id}-dsn.algolia.net/1/indexes/{index}/query"
        r = requests.post(endpoint, headers={"X-Algolia-API-Key": key, "X-Algolia-Application-Id": app_id, "Content-Type": "application/json"}, data=json.dumps({"query": q, "hitsPerPage": 10}), timeout=45)
        r.raise_for_status()
        return _ok("algolia results", r.json())

    raise ToolError(f"Unknown tool: {name}")


# ---------- LLM client ----------

@dataclass
class LLMConfig:
    base_url: str
    model: str
    api_key: str
    timeout: int = 300
    max_steps: int = 6
    thinking: str = "chain_of_thought"
    temperature: Optional[float] = None
    top_p: Optional[float] = None
    max_tokens: Optional[int] = None
    frequency_penalty: Optional[float] = None
    system_prompt: Optional[str] = None


def build_headers(api_key: str) -> Dict[str, str]:
    return {
        "Authorization": f"Bearer {api_key}",
        "Content-Type": "application/json",
    }


def call_llm(cfg: LLMConfig, messages: List[Dict[str, Any]], tools: List[Dict[str, Any]]) -> Dict[str, Any]:
    url = cfg.base_url.rstrip("/") + "/chat/completions"
    payload: Dict[str, Any] = {
        "model": cfg.model,
        "messages": messages,
        "tools": tools,
        "tool_choice": "auto",
    }

    # Apply preset sampling params
    preset = PRESETS.get(cfg.thinking, {})
    if cfg.temperature is None:
        payload["temperature"] = preset.get("temperature", 0.7)
    else:
        payload["temperature"] = cfg.temperature
    if cfg.top_p is None:
        payload["top_p"] = preset.get("top_p", 0.9)
    else:
        payload["top_p"] = cfg.top_p
    if cfg.max_tokens is None:
        payload["max_tokens"] = preset.get("max_tokens", 2048)
    else:
        payload["max_tokens"] = cfg.max_tokens
    if cfg.frequency_penalty is None:
        payload["frequency_penalty"] = preset.get("frequency_penalty", 0.0)
    else:
        payload["frequency_penalty"] = cfg.frequency_penalty

    resp = requests.post(url, headers=build_headers(cfg.api_key), data=json.dumps(payload), timeout=cfg.timeout)
    resp.raise_for_status()
    return resp.json()


def run_chat(cfg: LLMConfig) -> None:
    tools = get_elizabeth_tools()

    system_prompt = cfg.system_prompt or PRESETS.get(cfg.thinking, {}).get("system", "You are Elizabeth, an advanced research and MLOps assistant. You have powerful tools. Use them when helpful.")
    messages: List[Dict[str, Any]] = [{"role": "system", "content": system_prompt}]

    # Initialize session logging if available
    ss = None
    session_id: Optional[str] = None
    if SessionStore is not None:
        try:
            ss = SessionStore()
            session_id = ss.start_session(title=f"Elizabeth CLI - {datetime.utcnow().strftime('%Y-%m-%d %H:%M:%S')} UTC")
        except Exception:
            ss = None
            session_id = None

    print(f"Elizabeth CLI ready. Base: {cfg.base_url} | Model: {cfg.model} | Thinking: {cfg.thinking}")
    print("Type /exit to quit. Multi-line supported; end with Enter on empty line.")

    while True:
        user_text = read_multiline_input(prompt="> ")
        if not user_text:
            continue
        if user_text.strip() == "/exit":
            print("Bye.")
            return
        if user_text.strip() == "/clear":
            messages = [{"role": "system", "content": system_prompt}]
            print("Conversation cleared.")
            continue
        if user_text.strip() == "/history":
            print(f"Messages: {len(messages)}")
            continue
        if user_text.startswith("/system "):
            system_prompt = user_text[len("/system "):].strip()
            messages = [{"role": "system", "content": system_prompt}]
            print("System prompt updated.")
            continue
        if user_text.startswith("/save "):
            path = user_text[len("/save "):].strip()
            try:
                with open(path, "w", encoding="utf-8") as f:
                    f.write(json.dumps(messages, indent=2))
                print(f"Saved transcript to {path}")
            except Exception as e:
                print(f"Save failed: {e}")
            continue

        messages.append({"role": "user", "content": user_text})
        if ss and session_id:
            try:
                ss.add_message(session_id, 'user', user_text)
            except Exception:
                pass

        step = 0
        while True:
            step += 1
            data = call_llm(cfg, messages, tools)
            choice = (data.get("choices") or [{}])[0]
            msg = choice.get("message", {})

            # If tool calls present, execute and loop
            tool_calls = msg.get("tool_calls") or []
            if tool_calls:
                for call in tool_calls:
                    fn = call.get("function", {})
                    name = fn.get("name")
                    arg_str = fn.get("arguments") or "{}"
                    try:
                        args = json.loads(arg_str) if isinstance(arg_str, str) else (arg_str or {})
                    except json.JSONDecodeError:
                        args = {"_raw": arg_str}

                    try:
                        result = execute_tool(name, args)
                        messages.append({
                            "role": "tool",
                            "tool_call_id": call.get("id"),
                            "name": name,
                            "content": json.dumps(result),
                        })
                        print(f"[tool:{name}] -> {result.get('status')}\n")
                        if ss and session_id:
                            try:
                                ss.add_tool_call(session_id, name, args, result)
                            except Exception:
                                pass
                    except ToolError as te:
                        err = {"status": "error", "message": str(te)}
                        messages.append({
                            "role": "tool",
                            "tool_call_id": call.get("id"),
                            "name": name,
                            "content": json.dumps(err),
                        })
                        print(f"[tool:{name}] ERROR -> {te}\n")
                        if ss and session_id:
                            try:
                                ss.add_tool_call(session_id, name, args, {"error": str(te)})
                            except Exception:
                                pass

                # After executing tools, ask the model to continue
                continue

            # No tools: print the assistant content
            content = msg.get("content") or ""
            if content:
                print("\n" + content.strip() + "\n")
            messages.append({"role": "assistant", "content": content})
            if ss and session_id and content:
                try:
                    ss.add_message(session_id, 'assistant', content)
                except Exception:
                    pass

            if step >= cfg.max_steps:
                break
            break


def read_multiline_input(prompt: str = "> ") -> str:
    print(prompt, end="", flush=True)
    lines: List[str] = []
    while True:
        try:
            line = sys.stdin.readline()
        except KeyboardInterrupt:
            return "/exit"
        if not line:
            # EOF
            break
        if line.rstrip("\n").strip() == "":
            break
        lines.append(line)
        print(".. ", end="", flush=True)
    return "".join(lines).strip()


def parse_args(argv: Optional[List[str]] = None) -> argparse.Namespace:
    p = argparse.ArgumentParser(
        description="Elizabeth interactive CLI with tools (vLLM /chat/completions client)",
        formatter_class=argparse.ArgumentDefaultsHelpFormatter,
    )
    # Read environment at parse-time (after .env load) so overrides take effect
    env_base = os.environ.get("ELIZABETH_BASE_URL", DEFAULT_BASE_URL)
    env_api = os.environ.get("ELIZABETH_API_KEY", DEFAULT_API_KEY)
    p.add_argument("--base-url", default=env_base, help="Base URL to OpenAI-compatible API (e.g., http://localhost:8000/v1)")
    # Model is locked; no CLI argument provided to change it
    p.add_argument("--api-key", default=env_api, help="Bearer API key")
    p.add_argument("--thinking", default="chain_of_thought", choices=list(PRESETS.keys()), help="Reasoning preset")
    p.add_argument("--temperature", type=float, default=None, help="Override temperature")
    p.add_argument("--top-p", type=float, default=None, help="Override top_p")
    p.add_argument("--max-tokens", type=int, default=None, help="Override max_tokens")
    p.add_argument("--frequency-penalty", type=float, default=None, help="Override frequency_penalty")
    p.add_argument("--max-steps", type=int, default=6, help="Max inner tool-calling steps per turn")
    p.add_argument("--system", default=None, help="Custom system prompt (replaces preset)")
    return p.parse_args(argv)


def main(argv: Optional[List[str]] = None) -> int:
    _load_dotenv()
    args = parse_args(argv)
    cfg = LLMConfig(
        base_url=args.base_url,
        model=DEFAULT_MODEL,
        api_key=args.api_key,
        max_steps=args.max_steps,
        thinking=args.thinking,
        temperature=args.temperature,
        top_p=args.top_p,
        max_tokens=args.max_tokens,
        frequency_penalty=args.frequency_penalty,
        system_prompt=args.system,
    )
    try:
        run_chat(cfg)
        return 0
    except KeyboardInterrupt:
        print("\nInterrupted.")
        return 130
    except requests.HTTPError as e:
        print(f"HTTP error: {e} | Response: {getattr(e, 'response', None) and getattr(e.response, 'text', '')}")
        return 2
    except Exception as e:
        print(f"Error: {e}")
        return 1


if __name__ == "__main__":
    raise SystemExit(main())