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.gitattributes

@@ -58,3 +58,12 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 # Video files - compressed
 *.mp4 filter=lfs diff=lfs merge=lfs -text
 *.webm filter=lfs diff=lfs merge=lfs -text
+Data/GEO/GSE2034_expression_matrix.csv filter=lfs diff=lfs merge=lfs -text
+Data/METABRIC/metabric_raw/brca_metabric/data_cna.txt filter=lfs diff=lfs merge=lfs -text
+Data/METABRIC/metabric_raw/brca_metabric/data_methylation_promoters_rrbs.txt filter=lfs diff=lfs merge=lfs -text
+Data/METABRIC/metabric_raw/brca_metabric/data_mrna_illumina_microarray_zscores_ref_diploid_samples.txt filter=lfs diff=lfs merge=lfs -text
+Data/METABRIC/metabric_raw/brca_metabric/data_mrna_illumina_microarray.txt filter=lfs diff=lfs merge=lfs -text
+Data/SCAN-B/GSE96058_clinical_metadata.csv filter=lfs diff=lfs merge=lfs -text
+Data/SCAN-B/GSE96058_family.soft filter=lfs diff=lfs merge=lfs -text
+Data/TCGA-BRCA/aligned_mutation_X.tsv filter=lfs diff=lfs merge=lfs -text
+Data/TCGA-BRCA/brca_tcga_clinical_data.csv filter=lfs diff=lfs merge=lfs -text

Data/GEO/GSE2034_expression_matrix.csv

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Data/GEO/GSE2034_family.soft.gz

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Data/GEO/GSE96058-GPL11154_series_matrix.txt.gz

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Data/GEO/GSE96058-GPL18573_series_matrix.txt.gz

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Data/METABRIC/brca_metabric.tar.gz

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Data/METABRIC/metabric_raw/brca_metabric/LICENSE

@@ -0,0 +1 @@
+The data are available under the ODC Open Database License (ODbL)(http://opendatacommons.org/licenses/odbl/1.0/) (summary available here: http://www.opendatacommons.org/licenses/odbl/1-0/summary/): you are free to share and modify the data so long as you attribute any public use of the database, or works produced from the database; keep the resulting data-sets open; and offer your shared or adapted version of the data-set under the same ODbL license.

Data/METABRIC/metabric_raw/brca_metabric/Readme.txt

@@ -0,0 +1 @@
+Gene panels for this study can be found here: https://github.com/cBioPortal/datahub/tree/master/reference_data/gene_panels

Data/METABRIC/metabric_raw/brca_metabric/case_lists/cases_all.txt

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+cancer_study_identifier: brca_metabric
+stable_id: brca_metabric_all
+case_list_name: All samples
+case_list_description: All samples (2509 samples)
+case_list_category: all_cases_in_study
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1	MTS-T0085	MB-0320	MB-7114	MB-0452	MB-7291	MB-0906	MB-0451	MB-5169	MB-0901	MB-0454	MB-0455	MB-5164	MB-5167	MTS-T0083	MB-5161	MB-7293	MB-5163	MB-5162	MB-5369	MB-5368	MB-5366	MB-5365	MB-5364	MB-5361	MB-5360	MB-0245	MB-0244	MB-6168	MB-6169	MTS-T0305	MTS-T0304	MTS-T0303	MB-5580	MB-5041	MTS-T0239	MTS-T0238	MTS-T1633	MTS-T0233	MTS-T0232	MTS-T0231	MTS-T0230	MTS-T0237	MTS-T0236	MTS-T0235	MTS-T0234	MB-3013	MTS-T1548	MB-5588	MB-3016	MB-3014	MB-4292	MB-4293	MB-0603	MB-0601	MB-0600	MB-0607	MB-0606	MB-0605	MB-0609	MB-6167	MB-7251	MB-4564	MB-5186	MB-5185	MB-5184	MB-5183	MB-5182	MB-4360	MB-5189	MB-5188	MTS-T1300	MTS-T1301	MTS-T1302	MTS-T1303	MTS-T1304	MTS-T1305	MTS-T1306	MTS-T1307	MTS-T1308	MTS-T1309	MB-3123	MB-3122	MB-3121	MB-4591	MB-0119	MB-0117	MB-0116	MB-0115	MB-0114	MB-0113	MB-0112	MB-0111	MB-0110	MTS-T0185	MB-4639	MB-4634	MB-4633	MB-4630	MB-3235	MB-4742	MB-4743	MB-4741	MB-4746	MB-4744	MB-4745	MB-7031	MB-7030	MB-7032	MB-7035	MB-7034	MB-0025	MB-7036	MTS-T2095	MTS-T2094	MTS-T2097	MTS-T2096	MB-7215	MTS-T2090	MB-7295	MB-7216	MB-7219	MB-7218	MB-3344	MB-3341	MB-6297	MB-0336	MB-7107	MB-7106	MB-7101	MB-7100	MB-7102	MB-7109	MB-0339	MB-4966	MB-4967	MB-4965	MB-4962	MB-6271	MB-6272	MB-4961	MB-4968	MB-4969	MB-2749	MB-6184	MB-6185	MB-6182	MB-6183	MB-6181	MB-2742	MB-2744	MB-2745	MB-6188	MB-6189	MTS-T2432	MTS-T2431	MTS-T2430	MB-5502	MB-5505	MB-6071	MB-6077	MB-6075	MTS-T2320	MB-0593	MB-0592	MB-0591	MB-0590	MB-0597	MB-0596	MB-0594	MB-0599	MB-0598	MB-3823	MB-5215	MB-5214	MB-5213	MB-5212	MB-3824	MB-2513	MB-2517	MB-5218	MB-4621	MB-5628	MB-5178	MB-5179	MB-5172	MB-5173	MB-5171	MB-5176	MB-5177	MB-5174	MB-5175	MTS-T1800	MB-5378	MB-4823	MB-5377	MB-5370	MB-5373	MB-2994	MTS-T0824	MB-2996	MB-2990	MB-2993	MB-7131	MB-2999	MB-7132	MTS-T0312	MTS-T0313	MB-5625	MTS-T0228	MTS-T0229	MB-4981	MTS-T0224	MTS-T0225	MTS-T0226	MTS-T0227	MTS-T0220	MTS-T0221	MTS-T0222	MTS-T0223	MB-3001	MB-3002	MB-3005	MB-3006	MB-3007	MB-3008	MTS-T1576	MTS-T1571	MB-0610	MB-0611	MB-0613	MB-0614	MB-0615	MB-0616	MB-0617	MB-0618	MB-0619	MTS-T0558	MTS-T1973	MTS-T1971	MB-5195	MB-5196	MB-5197	MB-5190	MB-5191	MB-5193	MB-4351	MB-4350	MB-4353	MB-5199	MB-4357	MB-0108	MB-0109	MB-0106	MB-0107	MB-4139	MB-0101	MB-0102	MTS-T0883	MB-4649	MB-4648	MB-4643	MB-4642	MB-4641	MB-4640	MB-4644	MTS-T1203	MB-3228	MB-7027	MB-7024	MB-7025	MB-7022	MB-7023	MB-7020	MB-3222	MB-0513	MB-7028	MB-7029	MB-4001	MB-0039	MB-4003	MB-4005	MB-4004	MB-4008	MB-0035	MB-0036	MB-4750	MTS-T2086	MTS-T2087	MTS-T2084	MTS-T2085	MTS-T2083	MB-7208	MB-7207	MB-7205	MB-7200	MB-7201	MB-0056	MB-7006	MB-3355	MB-3357	MTS-T2150	MB-3351	MTS-T2153	MB-7001	MB-0324	MB-7113	MB-0326	MB-0327	MB-7116	MB-0321	MB-0322	MB-7115	MB-7118	MB-7119	MB-0328	MB-0329	MB-4912	MB-4911	MB-6242	MB-6245	MB-6246	MB-6248	MB-2774	MB-2771	MB-2770	MB-2772	MB-2779	MB-2778	MB-3388	MTS-T2420	MTS-T2421	MTS-T2422	MTS-T2423	MTS-T2424	MTS-T2425	MTS-T2426	MTS-T2427	MTS-T2428	MTS-T2429	MB-2618	MB-4829	MB-4828	MB-4827	MB-2613	MB-4825	MB-3748	MB-2616	MB-4822	MB-2614	MB-4820	MB-5518	MB-5519	MB-3582	MB-5510	MB-5511	MB-5513	MB-5514	MB-0408	MB-6085	MB-6083	MB-6082	MB-6080	MB-0580	MB-0581	MB-0582	MB-0583	MB-0584	MB-0585	MB-0586	MB-0587	MB-0588	MB-0589	MB-5204	MB-5205	MB-5206	MB-5200	MB-5201	MB-5208	MB-5209	MTS-T0141	MTS-T0140	MTS-T0143	MTS-T0142	MTS-T0145	MTS-T0144	MTS-T0147	MTS-T0146	MTS-T0149	MTS-T0148	MB-6322	MB-5349	MB-5348	MB-5341	MB-5345	MB-5347	MB-5346	MB-2983	MB-0150	MB-2984	MTS-T0035	MTS-T1020	MTS-T0365	MTS-T0364	MTS-T0367	MTS-T0366	MTS-T0361	MTS-T0360	MTS-T0363	MTS-T0362	MTS-T0369	MTS-T0368	MTS-T0510	MB-0220	MB-0223	MB-0222	MB-0225	MTS-T0515	MTS-T1560	MTS-T1561	MB-3035	MB-3037	MB-5629	MB-3033	MB-3032	MB-0628	MB-0228	MB-0658	MB-0627	MB-0626	MB-0621	MB-0620	MB-0623	MB-0535	MB-4342	MB-4343	MB-4341	MB-0537	MB-4348	MB-0536	MB-5064	MTS-T1366	MB-3103	MB-3102	MB-3105	MB-3104	MB-0139	MB-0138	MB-4120	MB-4126	MB-4127	MB-0131	MB-0130	MB-0133	MB-0135	MB-0134	MB-0136	MB-6107	MB-6105	MB-4651	MB-4653	MB-4654	MB-4655	MB-3211	MTS-T1213	MB-3218	MB-7053	MB-7052	MB-5622	MB-7050	MB-7057	MB-0000	MB-7055	MB-5403	MB-7059	MB-7058	MB-0008	MB-4018	MB-4017	MB-4015	MB-4012	MB-4010	MB-4011	MB-7279	MB-7278	MB-7273	MB-7270	MB-7277	MB-7276	MB-7275	MB-3361	MB-3360	MB-3363	MB-3365	MB-3367	MB-0311	MB-0310	MB-0313	MB-0312	MB-0315	MB-0314	MB-0317	MB-0316	MB-0319	MB-0318	MB-4900	MB-4904	MTS-T0132	MB-4906	MB-6256	MB-6257	MB-6254	MTS-T0133	MB-6253	MB-6251	MB-2763	MB-2760	MB-2767	MB-2764	MB-2765	MB-2769	MTS-T0139	MB-5525	MB-3752	MB-5526	MB-5521	MB-5520	MB-4834	MB-4836	MB-5529	MB-4832	MTS-T0490	MTS-T0242	MB-6098	MB-5492	MTS-T0243	MB-6097	MTS-T0240	MB-6092	MTS-T0241	MTS-T0710	MTS-T0247	MTS-T0244	MB-7079	MTS-T0713	MB-5231	MB-5230	MB-5233	MB-5232	MB-5235	MB-5236	MB-5239	MB-5238	MTS-T0152	MTS-T0153	MTS-T0150	MTS-T0151	MTS-T0156	MTS-T0157	MTS-T0154	MTS-T0155	MTS-T0158	MTS-T0159	MB-0489	MB-0488	MB-5350	MB-5351	MB-0481	MB-0480	MB-0483	MB-0482	MB-0485	MB-0484	MB-5358	MB-0486	MB-3978	MB-2977	MB-2971	MB-2970	MTS-T0376	MTS-T0398	MTS-T0374	MTS-T0375	MTS-T0372	MTS-T1774	MTS-T0370	MTS-T0399	MTS-T0378	MTS-T0379	MB-0405	MB-0404	MB-0554	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Data/METABRIC/metabric_raw/brca_metabric/case_lists/cases_cna.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: brca_metabric
+stable_id: brca_metabric_cna
+case_list_name: Samples with CNA data
+case_list_description: Samples with CNA data (2173 samples)
+case_list_category: all_cases_with_cna_data
+case_list_ids: MB-5489	MB-5482	MB-5483	MB-5481	MB-5486	MB-5484	MB-5485	MB-5648	MB-5645	MB-5646	MB-5647	MB-5640	MB-5641	MB-5642	MB-3429	MB-6359	MB-6358	MB-0238	MB-0239	MB-0236	MB-0234	MB-0235	MB-0232	MB-0233	MB-0230	MB-0231	MB-6179	MB-6178	MB-4849	MB-4845	MB-6171	MB-4846	MB-4843	MB-3526	MB-3525	MB-3528	MTS-T2398	MTS-T2392	MTS-T2393	MTS-T2391	MB-4333	MB-6007	MB-6006	MB-6001	MB-6008	MB-5260	MB-5261	MB-5266	MB-5267	MB-5264	MB-5268	MB-5464	MB-5465	MB-4999	MB-4998	MB-5460	MB-5463	MB-4993	MB-4992	MB-4991	MB-5468	MB-4996	MB-4994	MB-2922	MB-2923	MB-2927	MB-2929	MB-5073	MB-5072	MB-5070	MB-5076	MB-5074	MB-5079	MB-5078	MB-0508	MB-0509	MB-7104	MB-0500	MB-0501	MB-0502	MB-0503	MB-0504	MB-0505	MB-0506	MB-0507	MB-3854	MB-2858	MB-3852	MB-3850	MB-2854	MB-0333	MB-2857	MB-2850	MB-2851	MB-2853	MTS-T0709	MTS-T0703	MTS-T0250	MTS-T0701	MTS-T0700	MTS-T0707	MTS-T0706	MTS-T0705	MTS-T0704	MB-0434	MB-0435	MB-0436	MB-0437	MB-0431	MB-5109	MB-5107	MB-5106	MB-5105	MB-5104	MB-0438	MB-0439	MB-5101	MB-5100	MB-0661	MB-5059	MB-5058	MB-4189	MB-5057	MB-4212	MB-4213	MB-6273	MB-0487	MTS-T1279	MB-4434	MB-4724	MB-4725	MB-4721	MB-4722	MB-4723	MB-4729	MB-3181	MB-7189	MB-7188	MB-7185	MB-7187	MB-7186	MB-7181	MB-7182	MB-4762	MB-7167	MB-7165	MB-7164	MB-7163	MB-7162	MB-7161	MB-7160	MB-7168	MB-3459	MB-6344	MB-6346	MB-3453	MB-3452	MB-3450	MB-7299	MB-7298	MB-0249	MB-0248	MB-0243	MB-0242	MB-0241	MB-7292	MB-0247	MB-7294	MB-7297	MB-7296	MB-5583	MB-5582	MB-4858	MB-4859	MB-5585	MB-5584	MB-6160	MB-4853	MB-5589	MB-6163	MB-6164	MB-4855	MB-3530	MB-3536	MB-2747	MB-6014	MB-6016	MB-6017	MB-6010	MB-6011	MB-6012	MB-6018	MB-6019	MB-7069	MB-5299	MB-5298	MB-5296	MB-5295	MB-5294	MB-5293	MB-5292	MB-5291	MB-5290	MB-5451	MB-5450	MB-5453	MB-5452	MB-5455	MB-5454	MB-5457	MB-5459	MB-5458	MB-4982	MB-4986	MB-4987	MB-0193	MB-2919	MB-2669	MB-2917	MB-2916	MB-2912	MB-5060	MB-0534	MB-5062	MB-5063	MB-0531	MB-5065	MB-5066	MB-0532	MB-5068	MB-0539	MB-0538	MTS-T0134	MTS-T0136	MTS-T0137	MB-3840	MTS-T0131	MB-3842	MB-0417	MB-2863	MTS-T0138	MB-0414	MB-2867	MTS-T0718	MTS-T0719	MTS-T0714	MTS-T0715	MTS-T0716	MTS-T0717	MTS-T0711	MTS-T0712	MB-5124	MB-5127	MB-5126	MB-0401	MB-0400	MB-0403	MB-0402	MB-5118	MB-5119	MB-0406	MB-5114	MB-5115	MB-5116	MB-5117	MB-5110	MB-5113	MB-7123	MB-7122	MB-7127	MB-0020	MB-5467	MTS-T0409	MB-7124	MB-6187	MB-4224	MB-4222	MTS-T1280	MTS-T1283	MTS-T1282	MTS-T1285	MTS-T1284	MTS-T1287	MTS-T1286	MTS-T1047	MB-0199	MB-4711	MB-4710	MB-4712	MB-4715	MB-4714	MB-4717	MB-4716	MB-4719	MB-4718	MB-7198	MB-7199	MB-7193	MB-7196	MB-7197	MB-7194	MB-7195	MB-4407	MB-4154	MB-4408	MB-7174	MB-7176	MB-7170	MB-7171	MB-7172	MB-7173	MB-7286	MB-7287	MB-7284	MB-7285	MB-7283	MB-7280	MB-7281	MB-7288	MB-7289	MB-0258	MB-0259	MB-0253	MB-0256	MB-0257	MB-5590	MB-5591	MB-5592	MB-5593	MB-5596	MB-5597	MB-5599	MB-0046	MB-0360	MB-4686	MB-3506	MB-3500	MB-3502	MB-0365	MB-0366	MB-6021	MB-6020	MB-6023	MB-6022	MB-6024	MB-6026	MB-6029	MB-5288	MB-5289	MB-5284	MB-5287	MB-5280	MB-5281	MB-2712	MB-2711	MB-5446	MB-5447	MB-5444	MB-5442	MB-3614	MB-5440	MB-5441	MB-6154	MB-6157	MB-6156	MB-6150	MB-6152	MB-4881	MB-4880	MB-4883	MB-4882	MB-5211	MB-4887	MB-4886	MB-4888	MB-2900	MB-2901	MB-2904	MTS-T0093	MTS-T0092	MTS-T0091	MTS-T0090	MTS-T0095	MTS-T0094	MB-0522	MB-0521	MB-0526	MB-0527	MB-0524	MB-0525	MB-5054	MB-0528	MB-0529	MB-5050	MB-5053	MB-5052	MB-3871	MB-3874	MB-3297	MTS-T0279	MTS-T0276	MTS-T0275	MTS-T0273	MB-0440	MB-0418	MB-0419	MB-5121	MB-5120	MB-5123	MB-5122	MB-0412	MB-0413	MB-0410	MB-0411	MTS-T1872	MTS-T0652	MB-4091	MB-0215	MB-4233	MB-4230	MB-4236	MB-4234	MB-4235	MB-4098	MTS-T1292	MTS-T1293	MTS-T1290	MTS-T1291	MTS-T1296	MB-3298	MTS-T1294	MB-3295	MTS-T1298	MTS-T1299	MB-3292	MB-3058	MB-3057	MB-0081	MB-0083	MB-3050	MB-0649	MB-0646	MB-0644	MB-0643	MB-0642	MB-0641	MB-4529	MTS-T1454	MB-4708	MB-4709	MB-4706	MB-4707	MB-4704	MB-4705	MB-4702	MB-4701	MB-0640	MB-4866	MB-0399	MB-0398	MB-0391	MB-0390	MB-0393	MB-0392	MB-0395	MB-0394	MB-0397	MB-0396	MB-4145	MB-4146	MB-4140	MB-4141	MB-4418	MB-4148	MB-7141	MB-7140	MB-7143	MB-7142	MB-7145	MB-7144	MB-7147	MB-5614	MB-7149	MB-7148	MB-3476	MB-3470	MB-3479	MB-0265	MB-0264	MB-3275	MB-0266	MB-0261	MB-0260	MB-3271	MB-0262	MB-6363	MB-0269	MB-0268	MB-0066	MB-0064	MB-0062	MB-0060	MB-0068	MB-3510	MB-4685	MB-5418	MB-6039	MB-6036	MB-6030	MB-3606	MB-3600	MB-2705	MB-5433	MB-5432	MB-5431	MB-2708	MB-5435	MB-5434	MB-6143	MB-6141	MB-6146	MB-6147	MB-6144	MB-6145	MTS-T2212	MB-6149	MB-0885	MB-0884	MB-0880	MB-0882	MB-5547	MB-5546	MB-5543	MB-5541	MB-5540	MB-4896	MB-4897	MB-2643	MB-2642	MB-2645	MB-4893	MB-5549	MB-5548	MTS-T0702	MTS-T1659	MTS-T0088	MTS-T0089	MTS-T0084	MTS-T0085	MTS-T0086	MTS-T0087	MTS-T0080	MTS-T0081	MTS-T0082	MTS-T0083	MB-5048	MB-5049	MB-5043	MB-5040	MB-5041	MB-5044	MB-5045	MB-2803	MB-2801	MB-0014	MB-3866	MB-3865	MB-5521	MB-5136	MB-5137	MB-5134	MB-5135	MB-5130	MB-5131	MB-5138	MB-5139	MB-0469	MB-0468	MB-0463	MB-0462	MB-0460	MB-0467	MB-0466	MB-0465	MB-0464	MTS-T0646	MB-4416	MB-4417	MB-5588	MB-0432	MB-5613	MB-5102	MB-0099	MB-3049	MB-0093	MB-3046	MB-0097	MB-0095	MB-4557	MB-0659	MB-0654	MB-0655	MB-0656	MB-0657	MB-0650	MB-0652	MB-0653	MB-4395	MB-4390	MB-4779	MB-4778	MB-4771	MB-4770	MB-0386	MB-0384	MB-0385	MB-0382	MB-0383	MB-0380	MB-0381	MB-0388	MB-0389	MB-4171	MB-4173	MB-4607	MB-5601	MB-5602	MB-5603	MB-5604	MB-5605	MB-4601	MB-7159	MB-7157	MB-7154	MB-7155	MB-7152	MB-7153	MB-7150	MB-7151	MB-3462	MTS-T0927	MB-3466	MB-3467	MB-0272	MB-0273	MB-3266	MB-0275	MB-0278	MB-0279	MB-0071	MB-0079	MB-3277	MB-5410	MB-3272	MB-0263	MB-6049	MB-6048	MB-6042	MB-6047	MB-6044	MB-4959	MB-4957	MB-4956	MB-4952	MB-4950	MB-5428	MB-2730	MB-2735	MB-5420	MB-5421	MB-5422	MB-5424	MB-5425	MB-5426	MB-5427	MTS-T2206	MB-0308	MB-0893	MB-0891	MB-0897	MB-0895	MB-0899	MB-5554	MB-5556	MB-5550	MB-5551	MB-5552	MB-5553	MB-3707	MB-3706	MB-5558	MB-3702	MTS-T0071	MTS-T0070	MTS-T0073	MTS-T0072	MTS-T0075	MTS-T0074	MTS-T0077	MTS-T0076	MTS-T0079	MTS-T0078	MB-6237	MB-2814	MB-2815	MB-2819	MB-4935	MB-6226	MB-5143	MB-5140	MB-5147	MB-4933	MB-5145	MB-5144	MB-5148	MB-0478	MB-5384	MB-5387	MB-5386	MB-5381	MB-5383	MB-5382	MB-0470	MB-0471	MB-0472	MB-5389	MB-5388	MB-0476	MB-4354	MTS-T0325	MTS-T0699	MTS-T0698	MTS-T0691	MTS-T0690	MTS-T0693	MTS-T0692	MTS-T0695	MTS-T0694	MTS-T0697	MTS-T0696	MB-5093	MB-5092	MB-5097	MTS-T1616	MB-5098	MB-3079	MTS-T0528	MB-4548	MB-0660	MB-0663	MB-0662	MB-0664	MB-0667	MB-0666	MTS-T1922	MB-4381	MB-3383	MB-4769	MB-3381	MB-3386	MB-4760	MB-3389	MB-4763	MB-4764	MB-4767	MB-4616	MB-7128	MB-5638	MB-5635	MB-5634	MB-7121	MB-5636	MB-4618	MB-5633	MB-5632	MB-3497	MB-3492	MB-3490	MB-5150	MB-3253	MB-3252	MB-3254	MB-0289	MB-0288	MB-0287	MB-0286	MB-0285	MB-0284	MB-0283	MB-0282	MB-0281	MB-0280	MB-0045	MB-7019	MB-7018	MB-7017	MB-0048	MB-7015	MB-7014	MB-7013	MB-7012	MB-7011	MB-7010	MB-7237	MB-7236	MB-7235	MB-7234	MB-7233	MB-7232	MB-7231	MB-7230	MB-0100	MB-0442	MB-7238	MTS-T2167	MB-6058	MB-6059	MB-6050	MB-6051	MB-6052	MB-6053	MB-6055	MB-5414	MB-5417	MB-5411	MB-4949	MB-5413	MB-5412	MB-4944	MB-4945	MB-4941	MB-4942	MB-5532	MB-2728	MB-2724	MB-2725	MB-2721	MB-0564	MTS-T2410	MTS-T2413	MTS-T2412	MTS-T2415	MTS-T2414	MTS-T2416	MB-2626	MB-0869	MB-2624	MB-2629	MB-5560	MB-5563	MB-5562	MB-5565	MB-5567	MB-5566	MB-3711	MB-5039	MTS-T0062	MTS-T0063	MTS-T0060	MTS-T0061	MTS-T0066	MTS-T0067	MTS-T0064	MTS-T0065	MTS-T0068	MTS-T0069	MB-3430	MB-2536	MB-2827	MB-2821	MB-2820	MB-2823	MB-0445	MB-0444	MB-5152	MB-0446	MB-5154	MB-5155	MB-0443	MB-5157	MB-5158	MB-0449	MB-0448	MB-5392	MB-5393	MB-5390	MB-5396	MB-5397	MB-5394	MB-5395	MB-5398	MB-5399	MB-7026	MTS-T1134	MTS-T1138	MTS-T0689	MB-5088	MB-5086	MB-5084	MB-5081	MB-3067	MB-3064	MB-3062	MB-3063	MB-3060	MB-4749	MB-4283	MB-4282	MB-4281	MTS-T1000	MB-4578	MB-4000	MB-0025	MB-4375	MB-4374	MB-4593	MB-3395	MB-3396	MB-4599	MB-4598	MTS-T1314	MTS-T1313	MTS-T1312	MTS-T1311	MTS-T1310	MB-4119	MB-7138	MB-4623	MB-4622	MB-4627	MB-4626	MB-7130	MB-5623	MB-5620	MB-7133	MB-5626	MB-7135	MB-5624	MB-7137	MB-3488	MB-3487	MB-0299	MB-0294	MB-0295	MB-0290	MB-0291	MB-0292	MB-0293	MB-4757	MB-4024	MB-7008	MB-7009	MB-4752	MB-7004	MB-7005	MB-0054	MB-7007	MB-7000	MB-4758	MB-7002	MB-7003	MB-7225	MB-7226	MB-7227	MB-7220	MB-7228	MB-7229	MB-6288	MB-6284	MB-6287	MB-6286	MB-6281	MB-6280	MB-6283	MB-4894	MB-4876	MB-6263	MB-4289	MB-5402	MB-5403	MB-5401	MB-5406	MB-5407	MB-5404	MB-5405	MB-4970	MB-5408	MB-5409	MB-4974	MB-4977	MB-4976	MB-2758	MB-2753	MB-2752	MB-2750	MB-2754	MB-6190	MB-6192	MB-6195	MB-6194	MTS-T2408	MTS-T2409	MTS-T2402	MTS-T2403	MTS-T2406	MTS-T2407	MTS-T2404	MB-2632	MB-2634	MB-0874	MB-0876	MB-0877	MB-0872	MB-5579	MB-5576	MB-5577	MB-5575	MB-5572	MB-5571	MB-6065	MB-6060	MB-6063	MB-6062	MB-6069	MB-6068	MTS-T0059	MTS-T0058	MB-7112	MB-2838	MB-0325	MB-2833	MTS-T0160	MB-3838	MB-2834	MB-2835	MB-7111	MB-0320	MB-7114	MB-0452	MB-7291	MB-0906	MB-0451	MB-5169	MB-0901	MB-0454	MB-0455	MB-5164	MB-5167	MB-5166	MB-5161	MB-7293	MB-5163	MB-5162	MB-5369	MB-5368	MB-7295	MB-5365	MB-5364	MB-5361	MB-5360	MB-0245	MB-0244	MB-6168	MB-6169	MTS-T0304	MTS-T0303	MB-5580	MB-3013	MB-4851	MB-3016	MB-3014	MB-4292	MB-4293	MB-0603	MB-0601	MB-0600	MB-0607	MB-0606	MB-0605	MB-0609	MB-6167	MB-4564	MB-5186	MB-5185	MB-5184	MB-5183	MB-5182	MB-4360	MB-5189	MB-5188	MTS-T1300	MTS-T1303	MTS-T1304	MTS-T1306	MTS-T1307	MTS-T1308	MTS-T1309	MB-3123	MB-3122	MB-3121	MB-4591	MB-0119	MB-0117	MB-0116	MB-0115	MB-0114	MB-0113	MB-0112	MB-0111	MB-0110	MB-4639	MB-4634	MB-4633	MB-4630	MB-3235	MB-4742	MB-4743	MB-4741	MB-4746	MB-4744	MB-4745	MB-7031	MB-7030	MB-7032	MB-7035	MB-7034	MB-7037	MB-7036	MB-7212	MB-7215	MTS-T2090	MB-7217	MB-7216	MB-7219	MB-7218	MB-3344	MB-3341	MB-6297	MB-0336	MB-7107	MB-7106	MB-7101	MB-7100	MB-7102	MB-7109	MB-0339	MB-4966	MB-4967	MB-4965	MB-4962	MB-6271	MB-6272	MB-4961	MB-4968	MB-4969	MB-2749	MB-6184	MB-6185	MB-6182	MB-6183	MB-6181	MB-2742	MB-2744	MB-2745	MB-6188	MB-6189	MB-5502	MB-5505	MB-6071	MB-6077	MB-6075	MB-6079	MB-0593	MB-0592	MB-0591	MB-0590	MB-0597	MB-0596	MB-0594	MB-0599	MB-0598	MB-3823	MB-5215	MB-5214	MB-5213	MB-5212	MB-3824	MB-2513	MB-2517	MB-5218	MB-4621	MB-5628	MB-5178	MB-5179	MB-5172	MB-5173	MB-5171	MB-5176	MB-5177	MB-5174	MB-5175	MTS-T1800	MB-5378	MB-4823	MB-5377	MB-5370	MB-5373	MB-2994	MB-2996	MB-2990	MB-2993	MB-7131	MB-2999	MB-7132	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Data/METABRIC/metabric_raw/brca_metabric/case_lists/cases_cnaseq.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: brca_metabric
+stable_id: brca_metabric_cnaseq
+case_list_name: Samples with mutation and CNA data
+case_list_description: Samples with mutation and CNA data (2051 samples)
+case_list_category: all_cases_with_mutation_and_cna_data
+case_list_ids: MB-5489	MB-5482	MB-5483	MB-5481	MB-5486	MB-5484	MB-5485	MB-5645	MB-5646	MB-5647	MB-5640	MB-5641	MB-5642	MB-3429	MB-6359	MB-6358	MB-0238	MB-0239	MB-0236	MB-0234	MB-0235	MB-0232	MB-0233	MB-0230	MB-0231	MB-6179	MB-6178	MB-4849	MB-4845	MB-6171	MB-4846	MB-4843	MB-3526	MB-3525	MB-3528	MTS-T2398	MTS-T2392	MTS-T2393	MTS-T2391	MB-4333	MB-6007	MB-6006	MB-6001	MB-6008	MB-5260	MB-5261	MB-5266	MB-5267	MB-5264	MB-5268	MB-5464	MB-5465	MB-4999	MB-4998	MB-5463	MB-4993	MB-4992	MB-4991	MB-5468	MB-4996	MB-4994	MB-2922	MB-2923	MB-2927	MB-2929	MB-5073	MB-5072	MB-5070	MB-5074	MB-5079	MB-5078	MB-0509	MB-0336	MB-0500	MB-0501	MB-0503	MB-0504	MB-0505	MB-0506	MB-0507	MB-3854	MB-2858	MB-3852	MB-3850	MB-2854	MB-2857	MB-2850	MB-2851	MB-2853	MTS-T0709	MTS-T0703	MTS-T0702	MTS-T0701	MTS-T1659	MTS-T0707	MTS-T0706	MTS-T0705	MTS-T0704	MB-0434	MB-0436	MB-0437	MB-0431	MB-5107	MB-5105	MB-0438	MB-0439	MB-5101	MB-5100	MB-5059	MB-4769	MB-5058	MB-4189	MB-5057	MB-4212	MB-4213	MB-4961	MB-0487	MB-7054	MTS-T1279	MB-4434	MB-4724	MB-4725	MB-4721	MB-4722	MB-4723	MB-4729	MB-3181	MB-7189	MB-7185	MB-7187	MB-7186	MB-7181	MB-7182	MB-4762	MB-7167	MB-7165	MB-7164	MB-7163	MB-7162	MB-7161	MB-7160	MB-7168	MB-3459	MB-6344	MB-6346	MB-3453	MB-3452	MB-3450	MB-7299	MB-7298	MB-0249	MB-0243	MB-0242	MB-0241	MB-7292	MB-7295	MB-7294	MB-7297	MB-7296	MB-5583	MB-5582	MB-4858	MB-4859	MB-5584	MB-6160	MB-4853	MB-5589	MB-6163	MB-6164	MB-4855	MB-3530	MB-3536	MB-6189	MB-4763	MB-6014	MB-6016	MB-6017	MB-6010	MB-6011	MB-6012	MB-6018	MB-6019	MB-7069	MB-5299	MB-5298	MB-5296	MB-5295	MB-5294	MB-5293	MB-5292	MB-5291	MB-5290	MB-5451	MB-5450	MB-5453	MB-5452	MB-5455	MB-5454	MB-5457	MB-5459	MB-4981	MB-4982	MB-4986	MB-4987	MB-0193	MB-2919	MB-2669	MB-2917	MB-2916	MB-2912	MB-0535	MB-0534	MB-0537	MB-0536	MB-0531	MB-5065	MB-5066	MB-0532	MB-5068	MTS-T0134	MTS-T0136	MB-3840	MTS-T0131	MB-3842	MB-5120	MB-2863	MTS-T0138	MB-5123	MB-2867	MTS-T0718	MTS-T0714	MTS-T0715	MTS-T0716	MTS-T0717	MTS-T0711	MTS-T0712	MB-0413	MB-5127	MB-5126	MB-0401	MB-0400	MB-0402	MB-5118	MB-0404	MB-0406	MB-5114	MB-5115	MB-5116	MB-5117	MB-5110	MB-5113	MB-7123	MB-7122	MB-7127	MTS-T0409	MB-7124	MB-4224	MB-4222	MTS-T1280	MTS-T1283	MTS-T1282	MTS-T1285	MTS-T1284	MTS-T1287	MTS-T1286	MTS-T1047	MB-0199	MB-4711	MB-4710	MB-4712	MB-4715	MB-4714	MB-4717	MB-4716	MB-4719	MB-4718	MB-7198	MB-7199	MB-7193	MB-7196	MB-7197	MB-7194	MB-7195	MB-4407	MB-4154	MB-4408	MB-7174	MB-7176	MB-7170	MB-7171	MB-7172	MB-7173	MB-7286	MB-7287	MB-7284	MB-7285	MB-7283	MB-7280	MB-7281	MB-7288	MB-7289	MB-0258	MB-0259	MB-0253	MB-0256	MB-0257	MB-5590	MB-5591	MB-5592	MB-5593	MB-5596	MB-5597	MB-5599	MB-0046	MB-0360	MB-0361	MB-3506	MB-3500	MB-3502	MB-0365	MB-0366	MB-6021	MB-6023	MB-6022	MB-6024	MB-6026	MB-6029	MB-5288	MB-5284	MB-5287	MB-5280	MB-5281	MB-2712	MB-2711	MB-5446	MB-5447	MB-5444	MB-5442	MB-3614	MB-5440	MB-2718	MB-6154	MB-6157	MB-6156	MB-6150	MB-6152	MB-4881	MB-4880	MB-4883	MB-4882	MB-3824	MB-4887	MB-4886	MB-4888	MB-2900	MB-2901	MB-2904	MTS-T0093	MTS-T0092	MTS-T0091	MTS-T0090	MTS-T0095	MTS-T0094	MB-0522	MB-0521	MB-0526	MB-0527	MB-0524	MB-0525	MB-5054	MB-0528	MB-0529	MB-5050	MB-5053	MB-5052	MB-3871	MB-3874	MTS-T1298	MTS-T0279	MTS-T0276	MTS-T0275	MTS-T0273	MB-0418	MB-0419	MB-5121	MB-0417	MB-0414	MB-5122	MB-0412	MB-5124	MB-0410	MB-0411	MTS-T1872	MB-4091	MB-0215	MB-4233	MB-4230	MB-4236	MB-4234	MB-4235	MB-0083	MTS-T1292	MTS-T1293	MTS-T1290	MTS-T1291	MTS-T1296	MB-3298	MTS-T1294	MB-3295	MB-3297	MTS-T1299	MB-3292	MB-3058	MB-3057	MB-0081	MB-4098	MB-3050	MB-0649	MB-0646	MB-0644	MB-0643	MB-0642	MB-0641	MB-0640	MTS-T1454	MB-4708	MB-4709	MB-4706	MB-4707	MB-4704	MB-4705	MB-4702	MB-4701	MB-4529	MB-4866	MB-0399	MB-0398	MB-0391	MB-0393	MB-0392	MB-0395	MB-0394	MB-0397	MB-0396	MB-4145	MB-4146	MB-4416	MB-4417	MB-4418	MB-4148	MB-5613	MB-7140	MB-7143	MB-7142	MB-7145	MB-7144	MB-7147	MB-5614	MB-7149	MB-3476	MB-3470	MB-3479	MB-0265	MB-0264	MB-3275	MB-0266	MB-0261	MB-0260	MB-3271	MB-0262	MB-6363	MB-0269	MB-0268	MB-0066	MB-0062	MB-0060	MB-0068	MB-3510	MB-5373	MB-4941	MB-6039	MB-6036	MB-6030	MB-3606	MB-3600	MB-4949	MB-2705	MB-5433	MB-5432	MB-5431	MB-2708	MB-5435	MB-5434	MB-6143	MB-6141	MB-6146	MB-6147	MB-6144	MB-6145	MTS-T2212	MB-6149	MB-0884	MB-0880	MB-0882	MB-5547	MB-5543	MB-5541	MB-5540	MB-4896	MB-4897	MB-4894	MB-2642	MB-2645	MB-4893	MB-5549	MB-5548	MTS-T0700	MTS-T0088	MTS-T0089	MTS-T0084	MTS-T0085	MTS-T0086	MTS-T0087	MTS-T0080	MTS-T0081	MTS-T0082	MTS-T0083	MB-5048	MB-5049	MB-5043	MB-5040	MB-5041	MB-5044	MB-5045	MB-2803	MB-2801	MB-0014	MB-2749	MB-3866	MB-3865	MB-5521	MB-5134	MB-5135	MB-5130	MB-5138	MB-5139	MB-0469	MB-0468	MB-0463	MB-0462	MB-0467	MB-0466	MB-0465	MB-0464	MTS-T0646	MB-4140	MB-4141	MB-7141	MB-5102	MB-3049	MB-0093	MB-3046	MB-0097	MB-0095	MB-0658	MB-0659	MB-0654	MB-0655	MB-0656	MB-0657	MB-0650	MB-0652	MB-0653	MB-4395	MB-4390	MB-4779	MB-4778	MB-4771	MB-4770	MB-0386	MB-0384	MB-0385	MB-0382	MB-0383	MB-0380	MB-0381	MB-6167	MB-0388	MB-0389	MB-4171	MB-4173	MB-4607	MB-5601	MB-5602	MB-5603	MB-4603	MB-4602	MB-7158	MB-7159	MB-7157	MB-7154	MB-7155	MB-7152	MB-7153	MB-7150	MB-7151	MB-3462	MTS-T0927	MB-3466	MB-3467	MB-0272	MB-0273	MB-0270	MB-0278	MB-0279	MB-0079	MB-3277	MB-3272	MB-0263	MB-6049	MB-6048	MB-6042	MB-6047	MB-6044	MB-4959	MB-4957	MB-4956	MB-4952	MB-4950	MB-5428	MB-2730	MB-2735	MB-5420	MB-5421	MB-5422	MB-5424	MB-5425	MB-5426	MB-5427	MTS-T2206	MB-0308	MB-0891	MB-0897	MB-0895	MB-0899	MB-5554	MB-5556	MB-5550	MB-5551	MB-5552	MB-5553	MB-3707	MB-3706	MB-5558	MB-3702	MTS-T0071	MTS-T0070	MTS-T0073	MTS-T0072	MTS-T0075	MTS-T0074	MTS-T0077	MTS-T0076	MTS-T0079	MTS-T0078	MB-2814	MB-2815	MB-2819	MB-4935	MB-4930	MB-5143	MB-5147	MB-4933	MB-5145	MB-5144	MB-5148	MB-0478	MB-0479	MB-5386	MB-5381	MB-5383	MB-5382	MB-0470	MB-0471	MB-0472	MB-0474	MB-0475	MB-0476	MB-4354	MTS-T0325	MTS-T0699	MTS-T0698	MTS-T0691	MTS-T0690	MTS-T0693	MTS-T0692	MTS-T0695	MTS-T0694	MTS-T0697	MTS-T0696	MB-5093	MB-5092	MB-5097	MTS-T1616	MB-5098	MB-3079	MTS-T0528	MB-4548	MB-0660	MB-0663	MB-0662	MB-0664	MB-0666	MTS-T1922	MB-4381	MB-3383	MB-3382	MB-3381	MB-3386	MB-4760	MB-3389	MB-3388	MB-4764	MB-4767	MB-4616	MB-7128	MB-5638	MB-5635	MB-5634	MB-7121	MB-5636	MB-4618	MB-5633	MB-5632	MB-3497	MB-3492	MB-3490	MB-5150	MB-3253	MB-3252	MB-3254	MB-0288	MB-0287	MB-0286	MB-0285	MB-0284	MB-0282	MB-7019	MB-7018	MB-7017	MB-7015	MB-7014	MB-7013	MB-7012	MB-7011	MB-7010	MB-7237	MB-7236	MB-7235	MB-7234	MB-7233	MB-7232	MB-7231	MB-7230	MB-0100	MB-5157	MB-7238	MTS-T2167	MB-6058	MB-6059	MB-6050	MB-6051	MB-6052	MB-6053	MB-6055	MB-5414	MB-5417	MB-5411	MB-5410	MB-5412	MB-4944	MB-4945	MB-5418	MB-4942	MB-4809	MB-2728	MB-2724	MB-2725	MB-2721	MTS-T2410	MTS-T2413	MTS-T2412	MTS-T2415	MTS-T2414	MTS-T2416	MB-2626	MB-0869	MB-2624	MB-2629	MB-5560	MB-5563	MB-5562	MB-5565	MB-5567	MB-5566	MB-3711	MTS-T0062	MTS-T0063	MTS-T0060	MTS-T0061	MTS-T0066	MTS-T0067	MTS-T0064	MTS-T0065	MTS-T0068	MTS-T0069	MB-3430	MB-2536	MB-2827	MB-2821	MB-2820	MB-2823	MB-0445	MB-5152	MB-0446	MB-5154	MB-0440	MB-0443	MB-0442	MB-0449	MB-5392	MB-5393	MB-5390	MB-5396	MB-5397	MB-5395	MB-5398	MB-5399	MB-3228	MTS-T1134	MTS-T1138	MTS-T0689	MB-5088	MB-5086	MB-5084	MB-5081	MB-3067	MB-3064	MB-3062	MB-3063	MB-3060	MB-4283	MB-4282	MB-4281	MTS-T1000	MB-4578	MB-0039	MB-4375	MB-4374	MB-4593	MB-3395	MB-3396	MB-4599	MB-4598	MTS-T1314	MTS-T1313	MTS-T1312	MTS-T1310	MB-4119	MB-4621	MB-5628	MB-4622	MB-4627	MB-4626	MB-7130	MB-5623	MB-5620	MB-7133	MB-5626	MB-7135	MB-5624	MB-7137	MB-3488	MB-3487	MB-0294	MB-0295	MB-0290	MB-0291	MB-0292	MB-4757	MB-4024	MB-7008	MB-7009	MB-4752	MB-0056	MB-7005	MB-0054	MB-7007	MB-7000	MB-7001	MB-7002	MB-7003	MB-7225	MB-7226	MB-7227	MB-7220	MB-7228	MB-7229	MB-6288	MB-6284	MB-6287	MB-4899	MB-6281	MB-6280	MB-6283	MB-2643	MB-4876	MB-6263	MB-4289	MB-5402	MB-4978	MB-5401	MB-5406	MB-5407	MB-5404	MB-5405	MB-4970	MB-5408	MB-5409	MB-4974	MB-4977	MB-4976	MB-2758	MB-2753	MB-2752	MB-2750	MB-2754	MB-6190	MB-6192	MB-6195	MB-6194	MTS-T2408	MTS-T2409	MTS-T2402	MTS-T2403	MTS-T2406	MTS-T2407	MTS-T2404	MB-2632	MB-2634	MB-0874	MB-0877	MB-0872	MB-5579	MB-5576	MB-5577	MB-5575	MB-5572	MB-5571	MB-6065	MB-6060	MB-6063	MB-6062	MB-6069	MB-6068	MTS-T0059	MTS-T0058	MB-0324	MB-2838	MB-7113	MB-2833	MB-0491	MB-3838	MB-2834	MB-2835	MB-0010	MB-0320	MB-7114	MB-0452	MB-7291	MB-0906	MB-0451	MB-5169	MB-0901	MB-0455	MB-5164	MB-0458	MB-0459	MB-5161	MB-7293	MB-5163	MB-5162	MB-5369	MB-5368	MB-0247	MB-5365	MB-5364	MB-5361	MB-5360	MB-0245	MB-0244	MB-6168	MB-6169	MTS-T0304	MTS-T0303	MB-5580	MB-3013	MB-4851	MB-3016	MB-3014	MB-4292	MB-4293	MB-0603	MB-0601	MB-0600	MB-0607	MB-0606	MB-0605	MB-0609	MB-0608	MB-4564	MB-5186	MB-5185	MB-5184	MB-4368	MB-5182	MB-4360	MB-4362	MB-5188	MTS-T1300	MTS-T1303	MTS-T1304	MTS-T1306	MTS-T1307	MTS-T1308	MTS-T1309	MB-3123	MB-3122	MB-3121	MB-4591	MB-0119	MB-0117	MB-0116	MB-0115	MB-0114	MB-0112	MB-0111	MB-7252	MB-4639	MB-4634	MB-4633	MB-4630	MB-3235	MB-7039	MB-7038	MB-0028	MB-4746	MB-4744	MB-4033	MB-7031	MB-7030	MB-7032	MB-7035	MB-7034	MB-7037	MB-7036	MB-7212	MB-7215	MTS-T2090	MB-7217	MB-7216	MB-7219	MB-7218	MB-3344	MB-3341	MB-6297	MB-7104	MB-7107	MB-7106	MB-7101	MB-7100	MB-7102	MB-7109	MB-0339	MB-4966	MB-4967	MB-4965	MB-4962	MB-6271	MB-6272	MB-6273	MB-4968	MB-4969	MB-6187	MB-6184	MB-6185	MB-6182	MB-6183	MB-6181	MB-2742	MB-2744	MB-2745	MB-6188	MB-2747	MB-5502	MB-5505	MB-6071	MB-6077	MB-6075	MB-6079	MB-0593	MB-0591	MB-0590	MB-0597	MB-0596	MB-0594	MB-0599	MB-0598	MB-5215	MB-5214	MB-5213	MB-5212	MB-5211	MB-2513	MB-2517	MB-5218	MB-7138	MB-4623	MB-5178	MB-5179	MB-5172	MB-5173	MB-5171	MB-5176	MB-4825	MB-5174	MB-5175	MTS-T1800	MB-5378	MB-5377	MB-5370	MB-4822	MB-2994	MB-2996	MB-2990	MB-2993	MB-7131	MB-2999	MB-7132	MTS-T0313	MB-5458	MTS-T0951	MB-3001	MB-3002	MB-3005	MB-3006	MB-3007	MB-3008	MTS-T1576	MB-0611	MB-0613	MB-0614	MB-0615	MB-0616	MB-0618	MB-0619	MB-5195	MB-5196	MB-5197	MB-5190	MB-5191	MB-5193	MB-4351	MB-4350	MB-4353	MB-0002	MB-5199	MB-4357	MB-0108	MB-0109	MB-0106	MB-0107	MB-4139	MB-0101	MB-0102	MB-4649	MB-4648	MB-4643	MB-4642	MB-4641	MB-4640	MB-4644	MB-7026	MB-7027	MB-7024	MB-7025	MB-7022	MB-7023	MB-7020	MB-3222	MB-7028	MB-7029	MB-4001	MB-4000	MB-4003	MB-4005	MB-4004	MB-4008	MB-0035	MB-0036	MB-4750	MB-7208	MB-7207	MB-7205	MB-720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Data/METABRIC/metabric_raw/brca_metabric/case_lists/cases_complete.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: brca_metabric
+stable_id: brca_metabric_3way_complete
+case_list_name: Complete samples
+case_list_description: Samples with mutation, CNA and expression data (1866 samples)
+case_list_category: all_cases_with_mutation_and_cna_and_mrna_data
+case_list_ids: 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Data/METABRIC/metabric_raw/brca_metabric/case_lists/cases_mRNA.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: brca_metabric
+stable_id: brca_metabric_mrna
+case_list_name: Samples with mRNA data (Illumina Human v3 microarray)
+case_list_description: Samples with mRNA expression data (1980 samples)
+case_list_category: all_cases_with_mrna_array_data
+case_list_ids: 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Data/METABRIC/metabric_raw/brca_metabric/case_lists/cases_nat_comm_2016.txt

@@ -0,0 +1,5 @@
+cancer_study_identifier: brca_metabric
+stable_id: brca_metabric_2016
+case_list_name: Samples in Pereira et al., Nat Commun 2016
+case_list_description: Samples profiled in Pereira et al., Nat Commun 2016
+case_list_ids: MB-0492	MB-7008	MB-2770	MB-7060	MB-2771	MB-0537	MB-7083	MB-7095	MB-2790	MB-2815	MB-7025	MB-2969	MB-0531	MB-2792	MB-7048	MB-7003	MB-7088	MB-7005	MB-0528	MB-7000	MB-7044	MB-7063	MB-7055	MB-2803	MB-7049	MB-2823	MB-7082	MB-2847	MB-7093	MB-0506	MB-7061	MB-7041	MB-7040	MB-0559	MTS-T0035	MB-7099	MB-0532	MB-7052	MB-7092	MB-0544	MB-2840	MB-7058	MB-2764	MB-2838	MB-2819	MB-0522	MB-7062	MB-7002	MB-2772	MB-7010	MB-0550	MB-7097	MB-7013	MB-2846	MB-0541	MB-7059	MB-2774	MTS-T0058	MTS-T0059	MTS-T0060	MTS-T0061	MTS-T0062	MTS-T0063	MTS-T0064	MTS-T0065	MTS-T0066	MTS-T0067	MTS-T0068	MTS-T0069	MTS-T0070	MTS-T0071	MTS-T0072	MTS-T0073	MTS-T0074	MTS-T0075	MTS-T0076	MTS-T0077	MTS-T0078	MTS-T0079	MTS-T0080	MTS-T0081	MTS-T0082	MTS-T0083	MTS-T0084	MTS-T0085	MTS-T0086	MTS-T0087	MTS-T0088	MTS-T0089	MTS-T0090	MTS-T0091	MTS-T0092	MTS-T0093	MTS-T0094	MTS-T0095	MB-7032	MB-7006	MB-0469	MB-7068	MB-7004	MB-7057	MB-0538	MB-7056	MB-7094	MB-7045	MB-7031	MB-7074	MB-0552	MB-2957	MB-7087	MB-7084	MB-7037	MB-7038	MB-7081	MB-7067	MB-7065	MB-7035	MB-7024	MB-7090	MB-7086	MB-2853	MB-7046	MB-7050	MB-7079	MB-0542	MB-0571	MB-2793	MB-7012	MB-7072	MB-2745	MTS-T0131	MTS-T0132	MTS-T0133	MTS-T0134	MTS-T0135	MTS-T0136	MTS-T0137	MTS-T0138	MTS-T0139	MTS-T0140	MTS-T0141	MTS-T0142	MTS-T0143	MTS-T0144	MTS-T0145	MTS-T0146	MTS-T0147	MTS-T0148	MTS-T0149	MTS-T0150	MTS-T0151	MTS-T0152	MTS-T0153	MTS-T0154	MTS-T0155	MTS-T0156	MTS-T0157	MTS-T0158	MTS-T0159	MTS-T0160	MTS-T0161	MTS-T0162	MTS-T0163	MTS-T0164	MTS-T0165	MTS-T0166	MTS-T0167	MTS-T0168	MTS-T0169	MTS-T0170	MTS-T0171	MTS-T0172	MTS-T0173	MTS-T0174	MTS-T0175	MTS-T0176	MTS-T0177	MTS-T0178	MTS-T0179	MTS-T0180	MTS-T0181	MTS-T0182	MTS-T0183	MTS-T0184	MTS-T0185	MTS-T0186	MTS-T0187	MTS-T0188	MTS-T0189	MTS-T0190	MTS-T0191	MTS-T0192	MTS-T0193	MTS-T0194	MTS-T0195	MTS-T0196	MTS-T0197	MTS-T0198	MTS-T0199	MTS-T0200	MTS-T0201	MTS-T0202	MTS-T0203	MTS-T0204	MTS-T0205	MTS-T0206	MTS-T0207	MTS-T0208	MTS-T0209	MTS-T0210	MTS-T0211	MTS-T0212	MTS-T0213	MTS-T0214	MTS-T0215	MTS-T0216	MTS-T0217	MTS-T0218	MTS-T0219	MTS-T0220	MTS-T0221	MTS-T0222	MTS-T0223	MTS-T0224	MTS-T0225	MTS-T0226	MTS-T0227	MTS-T0228	MTS-T0229	MTS-T0230	MTS-T0231	MTS-T0232	MTS-T0233	MTS-T0234	MTS-T0235	MTS-T0236	MTS-T0237	MTS-T0238	MTS-T0239	MTS-T0240	MTS-T0241	MTS-T0242	MTS-T0243	MTS-T0244	MTS-T0245	MTS-T0246	MTS-T0247	MTS-T0248	MTS-T0249	MTS-T0250	MTS-T0251	MTS-T0252	MTS-T0253	MTS-T0254	MTS-T0255	MTS-T0256	MTS-T0257	MTS-T0258	MTS-T0259	MTS-T0260	MTS-T0261	MTS-T0262	MB-3500	MB-7244	MB-0630	MTS-T0266	MB-0000	MB-0002	MB-0005	MB-0006	MB-0008	MB-0010	MTS-T0273	MB-0014	MTS-T0275	MTS-T0276	MB-0022	MB-0025	MTS-T0279	MB-0028	MTS-T0281	MB-0035	MB-0036	MB-0039	MTS-T0285	MTS-T0286	MB-0045	MB-0046	MB-0048	MB-0050	MB-0053	MB-0054	MB-0056	MB-0060	MB-0062	MB-0064	MB-0066	MB-0068	MTS-T0299	MB-0079	MB-0081	MB-0083	MTS-T0303	MTS-T0304	MTS-T0305	MB-0093	MB-0095	MB-0097	MB-0100	MB-0101	MB-0102	MTS-T0312	MTS-T0313	MB-0106	MB-0107	MB-0108	MB-0109	MB-0111	MB-0112	MB-0113	MB-0114	MB-0115	MB-0116	MB-0117	MTS-T0325	MB-0119	MTS-T0327	MTS-T0328	MTS-T0329	MTS-T0330	MTS-T0331	MTS-T0332	MTS-T0333	MTS-T0334	MTS-T0335	MTS-T0336	MTS-T0337	MTS-T0338	MTS-T0339	MTS-T0340	MTS-T0341	MTS-T0342	MTS-T0343	MTS-T0344	MTS-T0345	MTS-T0346	MTS-T0347	MTS-T0348	MTS-T0349	MTS-T0350	MTS-T0351	MTS-T0352	MTS-T0353	MTS-T0354	MTS-T0355	MTS-T0356	MTS-T0357	MTS-T0358	MTS-T0359	MTS-T0360	MTS-T0361	MTS-T0362	MTS-T0363	MTS-T0364	MTS-T0365	MTS-T0366	MTS-T0367	MTS-T0368	MTS-T0369	MTS-T0370	MTS-T0371	MTS-T0372	MTS-T0373	MTS-T0374	MTS-T0375	MTS-T0376	MTS-T0377	MTS-T0378	MTS-T0379	MTS-T0380	MTS-T0381	MTS-T0382	MTS-T0383	MTS-T0384	MTS-T0385	MTS-T0386	MTS-T0387	MTS-T0388	MTS-T0389	MTS-T0390	MTS-T0391	MTS-T0392	MTS-T0393	MTS-T0394	MTS-T0395	MTS-T0396	MTS-T0397	MTS-T0398	MTS-T0399	MTS-T0400	MTS-T0401	MTS-T0402	MTS-T0403	MTS-T0404	MTS-T0405	MTS-T0406	MTS-T0407	MTS-T0408	MTS-T0409	MB-6156	MB-0135	MB-0282	MB-0504	MB-5208	MB-5647	MB-5645	MB-5638	MB-5655	MB-4010	MB-5629	MB-5636	MB-5654	MB-5633	MB-5632	MB-5626	MB-5628	MB-5624	MB-5139	MB-5653	MB-5652	MB-5599	MB-5613	MB-5617	MB-5616	MB-5622	MB-5635	MB-5623	MB-5602	MB-5590	MB-5601	MB-5575	MB-5577	MB-5589	MB-4603	MB-5591	MB-5572	MB-5604	MB-5597	MB-5571	MB-5562	MB-5566	MB-5565	MB-5556	MB-5583	MB-5554	MTS-T0456	MB-5560	MB-5576	MB-5579	MB-5551	MB-5548	MB-5547	MB-5540	MB-5550	MB-4011	MTS-T0466	MB-5534	MTS-T0468	MB-5535	MB-5527	MB-5525	MB-5526	MB-5521	MB-5518	MB-5520	MB-5532	MB-5514	MB-5511	MTS-T0479	MB-5510	MB-5531	MB-5529	MB-5484	MB-5486	MB-5482	MB-5481	MB-4005	MB-5499	MB-5477	MTS-T0490	MB-5472	MB-5483	MB-5473	MB-4883	MB-5478	MB-5497	MB-5468	MB-5485	MB-5502	MB-5505	MB-5459	MB-4329	MB-5300	MB-5471	MB-5452	MB-5422	MB-5457	MTS-T0508	MB-5458	MTS-T0510	MB-5474	MB-5454	MB-5451	MB-5455	MTS-T0515	MTS-T0516	MB-5475	MB-5465	MB-5464	MB-5453	MB-5444	MB-5441	MB-5432	MB-5434	MTS-T0525	MB-5417	MB-5426	MTS-T0528	MB-5447	MB-5446	MB-5431	MB-5424	MB-5492	MB-5420	MB-5299	MB-5421	MB-5489	MB-5418	MB-5414	MB-5294	MB-5408	MB-5409	MB-5411	MB-5407	MB-5405	MB-5435	MB-5406	MB-5296	MB-5490	MB-5429	MB-5295	MB-4682	MB-5401	MB-4598	MB-5412	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Data/METABRIC/metabric_raw/brca_metabric/case_lists/cases_nature_2012.txt

@@ -0,0 +1,5 @@
+cancer_study_identifier: brca_metabric
+stable_id: brca_metabric_2012
+case_list_name: Samples in Curtis et al., Nature 2012
+case_list_description: Samples profiled in Curtis et al., Nature 2012
+case_list_ids: MB-0000	MB-0039	MB-0045	MB-0046	MB-0048	MB-0050	MB-0053	MB-0062	MB-0064	MB-0066	MB-0068	MB-0079	MB-0081	MB-0083	MB-0093	MB-0095	MB-0097	MB-0100	MB-0108	MB-0113	MB-0120	MB-0124	MB-0134	MB-0138	MB-0139	MB-0148	MB-0149	MB-0157	MB-0171	MB-0174	MB-0197	MB-0198	MB-0221	MB-0222	MB-0223	MB-0224	MB-0229	MB-0233	MB-0235	MB-0241	MB-0243	MB-0247	MB-0256	MB-0258	MB-0262	MB-0266	MB-0268	MB-0272	MB-0287	MB-0291	MB-0301	MB-0302	MB-0307	MB-0311	MB-0312	MB-0313	MB-0316	MB-0317	MB-0319	MB-0320	MB-0321	MB-0322	MB-0324	MB-0325	MB-0328	MB-0336	MB-0339	MB-0340	MB-0341	MB-0342	MB-0343	MB-0345	MB-0346	MB-0348	MB-0349	MB-0353	MB-0354	MB-0356	MB-0358	MB-0359	MB-0360	MB-0361	MB-0362	MB-0363	MB-0364	MB-0375	MB-0386	MB-0389	MB-0392	MB-0394	MB-0406	MB-0412	MB-0427	MB-0442	MB-0444	MB-0469	MB-0482	MB-0505	MB-0519	MB-0521	MB-0522	MB-0524	MB-0525	MB-0526	MB-0527	MB-0528	MB-0529	MB-0531	MB-0532	MB-0534	MB-0541	MB-0542	MB-0544	MB-0545	MB-0550	MB-0551	MB-0552	MB-0553	MB-0554	MB-0558	MB-0559	MB-0569	MB-0570	MB-0571	MB-0573	MB-0593	MB-0616	MB-0872	MB-0874	MB-0884	MB-0899	MB-2513	MB-2517	MB-2536	MB-2556	MB-2564	MB-2610	MB-2613	MB-2614	MB-2616	MB-2617	MB-2618	MB-2624	MB-2626	MB-2629	MB-2632	MB-2634	MB-2642	MB-2643	MB-2645	MB-2669	MB-2686	MB-2705	MB-2708	MB-2711	MB-2712	MB-2718	MB-2721	MB-2724	MB-2725	MB-2728	MB-2730	MB-2735	MB-2742	MB-2744	MB-2745	MB-2747	MB-2749	MB-2750	MB-2752	MB-2753	MB-2754	MB-2758	MB-2760	MB-2763	MB-2764	MB-2765	MB-2767	MB-2769	MB-2770	MB-2771	MB-2772	MB-2774	MB-2778	MB-2779	MB-2781	MB-2786	MB-2790	MB-2791	MB-2792	MB-2793	MB-2795	MB-2796	MB-2797	MB-2801	MB-2803	MB-2814	MB-2815	MB-2819	MB-2820	MB-2821	MB-2823	MB-2827	MB-2833	MB-2834	MB-2835	MB-2838	MB-2840	MB-2842	MB-2843	MB-2844	MB-2845	MB-2846	MB-2847	MB-2848	MB-2849	MB-2850	MB-2851	MB-2853	MB-2854	MB-2857	MB-2858	MB-2863	MB-2867	MB-2895	MB-2896	MB-2900	MB-2901	MB-2904	MB-2912	MB-2916	MB-2917	MB-2919	MB-2922	MB-2923	MB-2927	MB-2929	MB-2931	MB-2932	MB-2933	MB-2939	MB-2944	MB-2947	MB-2951	MB-2952	MB-2953	MB-2954	MB-2957	MB-2960	MB-2963	MB-2964	MB-2966	MB-2969	MB-2970	MB-2971	MB-2977	MB-2983	MB-2984	MB-2990	MB-2993	MB-2994	MB-2996	MB-2999	MB-3001	MB-3002	MB-3005	MB-3006	MB-3007	MB-3008	MB-3013	MB-3014	MB-3016	MB-3021	MB-3025	MB-3026	MB-3028	MB-3031	MB-3032	MB-3033	MB-3035	MB-3037	MB-3046	MB-3049	MB-3050	MB-3057	MB-3058	MB-3060	MB-3062	MB-3063	MB-3064	MB-3067	MB-3079	MB-3083	MB-3085	MB-3088	MB-3092	MB-3102	MB-3103	MB-3104	MB-3105	MB-3110	MB-3121	MB-3122	MB-3123	MB-3153	MB-3165	MB-3167	MB-3171	MB-3181	MB-3211	MB-3218	MB-3222	MB-3228	MB-3235	MB-3252	MB-3254	MB-3266	MB-3271	MB-3272	MB-3275	MB-3277	MB-3292	MB-3295	MB-3297	MB-3298	MB-3300	MB-3301	MB-3303	MB-3328	MB-3329	MB-3341	MB-3344	MB-3350	MB-3351	MB-3355	MB-3357	MB-3360	MB-3361	MB-3363	MB-3365	MB-3367	MB-3371	MB-3378	MB-3379	MB-3381	MB-3382	MB-3383	MB-3386	MB-3388	MB-3389	MB-3395	MB-3396	MB-3402	MB-3403	MB-3412	MB-3417	MB-3429	MB-3430	MB-3435	MB-3436	MB-3437	MB-3439	MB-3450	MB-3452	MB-3453	MB-3459	MB-3462	MB-3466	MB-3467	MB-3470	MB-3476	MB-3479	MB-3487	MB-3488	MB-3490	MB-3492	MB-3497	MB-3500	MB-3502	MB-3506	MB-3510	MB-3525	MB-3526	MB-3528	MB-3530	MB-3536	MB-3545	MB-3548	MB-3556	MB-3567	MB-3576	MB-3582	MB-3600	MB-3606	MB-3614	MB-3702	MB-3706	MB-3707	MB-3711	MB-3748	MB-3752	MB-3754	MB-3781	MB-3797	MB-3824	MB-3838	MB-3840	MB-3842	MB-3850	MB-3852	MB-3854	MB-3865	MB-3866	MB-3871	MB-3874	MB-3978	MB-4000	MB-4001	MB-4003	MB-4004	MB-4005	MB-4008	MB-4010	MB-4011	MB-4012	MB-4015	MB-4017	MB-4018	MB-4024	MB-4033	MB-4046	MB-4059	MB-4079	MB-4091	MB-4098	MB-4119	MB-4120	MB-4126	MB-4127	MB-4139	MB-4140	MB-4141	MB-4145	MB-4146	MB-4148	MB-4154	MB-4171	MB-4173	MB-4189	MB-4212	MB-4213	MB-4222	MB-4224	MB-4230	MB-4233	MB-4234	MB-4235	MB-4236	MB-4250	MB-4254	MB-4264	MB-4266	MB-4270	MB-4274	MB-4276	MB-4278	MB-4281	MB-4282	MB-4283	MB-4289	MB-4292	MB-4293	MB-4300	MB-4303	MB-4306	MB-4310	MB-4313	MB-4317	MB-4318	MB-4322	MB-4323	MB-4324	MB-4328	MB-4329	MB-4331	MB-4332	MB-4333	MB-4339	MB-4341	MB-4342	MB-4343	MB-4348	MB-4350	MB-4351	MB-4353	MB-4354	MB-4357	MB-4360	MB-4362	MB-4368	MB-4374	MB-4375	MB-4381	MB-4390	MB-4395	MB-4407	MB-4408	MB-4416	MB-4417	MB-4418	MB-4421	MB-4426	MB-4434	MB-4442	MB-4484	MB-4529	MB-4548	MB-4557	MB-4564	MB-4578	MB-4591	MB-4593	MB-4598	MB-4599	MB-4601	MB-4603	MB-4607	MB-4616	MB-4618	MB-4621	MB-4622	MB-4623	MB-4626	MB-4627	MB-4630	MB-4633	MB-4634	MB-4639	MB-4640	MB-4641	MB-4642	MB-4643	MB-4644	MB-4648	MB-4649	MB-4651	MB-4653	MB-4654	MB-4655	MB-4660	MB-4661	MB-4663	MB-4665	MB-4666	MB-4667	MB-4669	MB-4670	MB-4671	MB-4672	MB-4673	MB-4674	MB-4675	MB-4679	MB-4681	MB-4682	MB-4685	MB-4686	MB-4687	MB-4688	MB-4691	MB-4692	MB-4694	MB-4695	MB-4696	MB-4697	MB-4698	MB-4701	MB-4702	MB-4704	MB-4705	MB-4706	MB-4707	MB-4708	MB-4709	MB-4710	MB-4711	MB-4712	MB-4714	MB-4715	MB-4716	MB-4717	MB-4718	MB-4719	MB-4721	MB-4722	MB-4723	MB-4724	MB-4725	MB-4729	MB-4730	MB-4731	MB-4732	MB-4733	MB-4735	MB-4737	MB-4738	MB-4739	MB-4741	MB-4742	MB-4743	MB-4744	MB-4745	MB-4746	MB-4749	MB-4750	MB-4752	MB-4757	MB-4758	MB-4760	MB-4762	MB-4763	MB-4764	MB-4767	MB-4769	MB-4770	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Data/METABRIC/metabric_raw/brca_metabric/case_lists/cases_sequenced.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: brca_metabric
+stable_id: brca_metabric_sequenced
+case_list_name: Samples with mutation data
+case_list_description: Samples with mutation data (2433 samples)
+case_list_category: all_cases_with_mutation_data
+case_list_ids: MB-0492	MB-7008	MB-2770	MB-7060	MB-2771	MB-0537	MB-7083	MB-7095	MB-2790	MB-2815	MB-7025	MB-2969	MB-0531	MB-2792	MB-7048	MB-7003	MB-7088	MB-7005	MB-0528	MB-7000	MB-7044	MB-7063	MB-7055	MB-2803	MB-7049	MB-2823	MB-7082	MB-2847	MB-7093	MB-0506	MB-7061	MB-7041	MB-7040	MB-0559	MTS-T0035	MB-7099	MB-0532	MB-7052	MB-7092	MB-0544	MB-2840	MB-7058	MB-2764	MB-2838	MB-2819	MB-0522	MB-7062	MB-7002	MB-2772	MB-7010	MB-0550	MB-7097	MB-7013	MB-2846	MB-0541	MB-7059	MB-2774	MTS-T0058	MTS-T0059	MTS-T0060	MTS-T0061	MTS-T0062	MTS-T0063	MTS-T0064	MTS-T0065	MTS-T0066	MTS-T0067	MTS-T0068	MTS-T0069	MTS-T0070	MTS-T0071	MTS-T0072	MTS-T0073	MTS-T0074	MTS-T0075	MTS-T0076	MTS-T0077	MTS-T0078	MTS-T0079	MTS-T0080	MTS-T0081	MTS-T0082	MTS-T0083	MTS-T0084	MTS-T0085	MTS-T0086	MTS-T0087	MTS-T0088	MTS-T0089	MTS-T0090	MTS-T0091	MTS-T0092	MTS-T0093	MTS-T0094	MTS-T0095	MB-7032	MB-7006	MB-0469	MB-7068	MB-7004	MB-7057	MB-0538	MB-7056	MB-7094	MB-7045	MB-7031	MB-7074	MB-0552	MB-2957	MB-7087	MB-7084	MB-7037	MB-7038	MB-7081	MB-7067	MB-7065	MB-7035	MB-7024	MB-7090	MB-7086	MB-2853	MB-7046	MB-7050	MB-7079	MB-0542	MB-0571	MB-2793	MB-7012	MB-7072	MB-2745	MTS-T0131	MTS-T0132	MTS-T0133	MTS-T0134	MTS-T0135	MTS-T0136	MTS-T0137	MTS-T0138	MTS-T0139	MTS-T0140	MTS-T0141	MTS-T0142	MTS-T0143	MTS-T0144	MTS-T0145	MTS-T0146	MTS-T0147	MTS-T0148	MTS-T0149	MTS-T0150	MTS-T0151	MTS-T0152	MTS-T0153	MTS-T0154	MTS-T0155	MTS-T0156	MTS-T0157	MTS-T0158	MTS-T0159	MTS-T0160	MTS-T0161	MTS-T0162	MTS-T0163	MTS-T0164	MTS-T0165	MTS-T0166	MTS-T0167	MTS-T0168	MTS-T0169	MTS-T0170	MTS-T0171	MTS-T0172	MTS-T0173	MTS-T0174	MTS-T0175	MTS-T0176	MTS-T0177	MTS-T0178	MTS-T0179	MTS-T0180	MTS-T0181	MTS-T0182	MTS-T0183	MTS-T0184	MTS-T0185	MTS-T0186	MTS-T0187	MTS-T0188	MTS-T0189	MTS-T0190	MTS-T0191	MTS-T0192	MTS-T0193	MTS-T0194	MTS-T0195	MTS-T0196	MTS-T0197	MTS-T0198	MTS-T0199	MTS-T0200	MTS-T0201	MTS-T0202	MTS-T0203	MTS-T0204	MTS-T0205	MTS-T0206	MTS-T0207	MTS-T0208	MTS-T0209	MTS-T0210	MTS-T0211	MTS-T0212	MTS-T0213	MTS-T0214	MTS-T0215	MTS-T0216	MTS-T0217	MTS-T0218	MTS-T0219	MTS-T0220	MTS-T0221	MTS-T0222	MTS-T0223	MTS-T0224	MTS-T0225	MTS-T0226	MTS-T0227	MTS-T0228	MTS-T0229	MTS-T0230	MTS-T0231	MTS-T0232	MTS-T0233	MTS-T0234	MTS-T0235	MTS-T0236	MTS-T0237	MTS-T0238	MTS-T0239	MTS-T0240	MTS-T0241	MTS-T0242	MTS-T0243	MTS-T0244	MTS-T0245	MTS-T0246	MTS-T0247	MTS-T0248	MTS-T0249	MTS-T0250	MTS-T0251	MTS-T0252	MTS-T0253	MTS-T0254	MTS-T0255	MTS-T0256	MTS-T0257	MTS-T0258	MTS-T0259	MTS-T0260	MTS-T0261	MTS-T0262	MB-3500	MB-7244	MB-0630	MTS-T0266	MB-0000	MB-0002	MB-0005	MB-0006	MB-0008	MB-0010	MTS-T0273	MB-0014	MTS-T0275	MTS-T0276	MB-0022	MB-0025	MTS-T0279	MB-0028	MTS-T0281	MB-0035	MB-0036	MB-0039	MTS-T0285	MTS-T0286	MB-0045	MB-0046	MB-0048	MB-0050	MB-0053	MB-0054	MB-0056	MB-0060	MB-0062	MB-0064	MB-0066	MB-0068	MTS-T0299	MB-0079	MB-0081	MB-0083	MTS-T0303	MTS-T0304	MTS-T0305	MB-0093	MB-0095	MB-0097	MB-0100	MB-0101	MB-0102	MTS-T0312	MTS-T0313	MB-0106	MB-0107	MB-0108	MB-0109	MB-0111	MB-0112	MB-0113	MB-0114	MB-0115	MB-0116	MB-0117	MTS-T0325	MB-0119	MTS-T0327	MTS-T0328	MTS-T0329	MTS-T0330	MTS-T0331	MTS-T0332	MTS-T0333	MTS-T0334	MTS-T0335	MTS-T0336	MTS-T0337	MTS-T0338	MTS-T0339	MTS-T0340	MTS-T0341	MTS-T0342	MTS-T0343	MTS-T0344	MTS-T0345	MTS-T0346	MTS-T0347	MTS-T0348	MTS-T0349	MTS-T0350	MTS-T0351	MTS-T0352	MTS-T0353	MTS-T0354	MTS-T0355	MTS-T0356	MTS-T0357	MTS-T0358	MTS-T0359	MTS-T0360	MTS-T0361	MTS-T0362	MTS-T0363	MTS-T0364	MTS-T0365	MTS-T0366	MTS-T0367	MTS-T0368	MTS-T0369	MTS-T0370	MTS-T0371	MTS-T0372	MTS-T0373	MTS-T0374	MTS-T0375	MTS-T0376	MTS-T0377	MTS-T0378	MTS-T0379	MTS-T0380	MTS-T0381	MTS-T0382	MTS-T0383	MTS-T0384	MTS-T0385	MTS-T0386	MTS-T0387	MTS-T0388	MTS-T0389	MTS-T0390	MTS-T0391	MTS-T0392	MTS-T0393	MTS-T0394	MTS-T0395	MTS-T0396	MTS-T0397	MTS-T0398	MTS-T0399	MTS-T0400	MTS-T0401	MTS-T0402	MTS-T0403	MTS-T0404	MTS-T0405	MTS-T0406	MTS-T0407	MTS-T0408	MTS-T0409	MB-6156	MB-0135	MB-0282	MB-0504	MB-5208	MB-5647	MB-5645	MB-5638	MB-5655	MB-4010	MB-5629	MB-5636	MB-5654	MB-5633	MB-5632	MB-5626	MB-5628	MB-5624	MB-5139	MB-5653	MB-5652	MB-5599	MB-5613	MB-5617	MB-5616	MB-5622	MB-5635	MB-5623	MB-5602	MB-5590	MB-5601	MB-5575	MB-5577	MB-5589	MB-4603	MB-5591	MB-5572	MB-5604	MB-5597	MB-5571	MB-5562	MB-5566	MB-5565	MB-5556	MB-5583	MB-5554	MTS-T0456	MB-5560	MB-5576	MB-5579	MB-5551	MB-5548	MB-5547	MB-5540	MB-5550	MB-4011	MTS-T0466	MB-5534	MTS-T0468	MB-5535	MB-5527	MB-5525	MB-5526	MB-5521	MB-5518	MB-5520	MB-5532	MB-5514	MB-5511	MTS-T0479	MB-5510	MB-5531	MB-5529	MB-5484	MB-5486	MB-5482	MB-5481	MB-4005	MB-5499	MB-5477	MTS-T0490	MB-5472	MB-5483	MB-5473	MB-4883	MB-5478	MB-5497	MB-5468	MB-5485	MB-5502	MB-5505	MB-5459	MB-4329	MB-5300	MB-5471	MB-5452	MB-5422	MB-5457	MTS-T0508	MB-5458	MTS-T0510	MB-5474	MB-5454	MB-5451	MB-5455	MTS-T0515	MTS-T0516	MB-5475	MB-5465	MB-5464	MB-5453	MB-5444	MB-5441	MB-5432	MB-5434	MTS-T0525	MB-5417	MB-5426	MTS-T0528	MB-5447	MB-5446	MB-5431	MB-5424	MB-5492	MB-5420	MB-5299	MB-5421	MB-5489	MB-5418	MB-5414	MB-5294	MB-5408	MB-5409	MB-5411	MB-5407	MB-5405	MB-5435	MB-5406	MB-5296	MB-5490	MB-5429	MB-5295	MB-4682	MB-5401	MB-4598	MB-5412	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Data/METABRIC/metabric_raw/brca_metabric/data_cna.txt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d11ced593f3001f32a090cc03e2feb3ec55550f57b723ad3d7220d8465f1ff4a
+size 106059807

Data/METABRIC/metabric_raw/brca_metabric/data_gene_panel_matrix.txt

@@ -0,0 +1,2434 @@
+SAMPLE_ID	mutations
+MB-0000	METABRIC_173
+MB-0002	METABRIC_173
+MB-0005	METABRIC_173
+MB-0006	METABRIC_173
+MB-0008	METABRIC_173
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+MB-0036	METABRIC_173
+MB-0039	METABRIC_173
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+MB-0046	METABRIC_173
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+MB-0176	METABRIC_173
+MB-0177	METABRIC_173
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+MB-7299	METABRIC_173
+MTS-T0035	METABRIC_173
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Data/TCGA-BRCA/population_static_A_off.tsv

@@ -0,0 +1,4 @@
+	Reactome_PI3K_AKT_Activation	Reactome_ESR1_Mediated_Transcription	Reactome_Apoptosis_Execution
+Reactome_PI3K_AKT_Activation	0.0	1.0	1.0
+Reactome_ESR1_Mediated_Transcription	0.0	0.0	1.0
+Reactome_Apoptosis_Execution	0.0	0.0	0.0

Data/TCGA-BRCA/raw_pathway_P_matrix.tsv

@@ -0,0 +1,958 @@
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