Update README.md
Browse files
README.md
CHANGED
|
@@ -20,9 +20,7 @@ configs:
|
|
| 20 |
|
| 21 |
# BFD Source Archive Index
|
| 22 |
|
| 23 |
-
|
| 24 |
-
|
| 25 |
-
Use the original `bfd_metaclust_clu_complete_id30_c90_final_seq.sorted_opt.tar.gz` archive for complete sequence data. Use the default Parquet table for quick inspection, Dataset Viewer previews, and source-size/chunk metadata.
|
| 26 |
|
| 27 |
## Splits
|
| 28 |
|
|
@@ -112,6 +110,16 @@ print(source_files)
|
|
| 112 |
| `access_note` | Note describing the index scope. |
|
| 113 |
| `split_bucket` | Deterministic split bucket from `sha256(index_id) % 10`. |
|
| 114 |
|
| 115 |
-
#
|
| 116 |
|
| 117 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 20 |
|
| 21 |
# BFD Source Archive Index
|
| 22 |
|
| 23 |
+
BFD is a very large clustered protein sequence database built from UniProt and metagenomic sequence resources, commonly used for homology search and multiple sequence alignment generation.
|
|
|
|
|
|
|
| 24 |
|
| 25 |
## Splits
|
| 26 |
|
|
|
|
| 110 |
| `access_note` | Note describing the index scope. |
|
| 111 |
| `split_bucket` | Deterministic split bucket from `sha256(index_id) % 10`. |
|
| 112 |
|
| 113 |
+
# Citation
|
| 114 |
|
| 115 |
+
```
|
| 116 |
+
@article{steinegger2019bfd,
|
| 117 |
+
title = {Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold},
|
| 118 |
+
author = {Steinegger, Martin and Mirdita, Milot and S{\"o}ding, Johannes},
|
| 119 |
+
journal = {Nature Methods},
|
| 120 |
+
volume = {16},
|
| 121 |
+
pages = {603--606},
|
| 122 |
+
year = {2019},
|
| 123 |
+
doi = {10.1038/s41592-019-0437-4}
|
| 124 |
+
}
|
| 125 |
+
```
|