Add files using upload-large-folder tool
Browse files- .gitattributes +1 -0
- README.md +84 -0
- _MANIFEST.json +17 -0
- tables/annotation_disprot_disprot_current.json.jsonl +3 -0
.gitattributes
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# Video files - compressed
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*.mp4 filter=lfs diff=lfs merge=lfs -text
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*.webm filter=lfs diff=lfs merge=lfs -text
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# Video files - compressed
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*.mp4 filter=lfs diff=lfs merge=lfs -text
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*.webm filter=lfs diff=lfs merge=lfs -text
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tables/annotation_disprot_disprot_current.json.jsonl filter=lfs diff=lfs merge=lfs -text
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README.md
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---
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license: cc-by-4.0
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pretty_name: DisProt
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size_categories:
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- n<1K
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task_categories:
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- other
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language:
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- en
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tags:
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- biology
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- proteins
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- intrinsic-disorder
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- disprot
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- annotation
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- jsonl
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---
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# DisProt
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DisProt curated intrinsically disordered protein annotations, normalized to newline-delimited JSON with row-level provenance.
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Processed and uploaded by the [MegaData](https://github.com/) post-download pipeline
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(internal repo). Original source: <https://disprot.org/>.
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## Statistics
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| | |
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|---|---|
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| Table files | 1 |
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| Total rows | 1 |
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| Total bytes | 25.58 MiB (26,821,358) |
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## Tables
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| Table | Rows | Bytes |
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|---|---:|---:|
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| `annotation_disprot_disprot_current.json.jsonl` | 1 | 25.58 MiB |
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## Layout
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```
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.
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├── _MANIFEST.json # aggregate manifest (per-table counts)
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└── tables/<source_slug>.jsonl # normalized rows (one JSON object per line)
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```
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Each line in a `tables/*.jsonl` file is a JSON object with at least
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`dataset_id`, `row` (the raw upstream row), `row_index`, and `source_file`
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fields, so every row carries its upstream provenance.
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## Loading
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```bash
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hf download LiteFold/DisProt --repo-type dataset --local-dir ./disprot
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```
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Programmatic streaming:
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```python
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import json
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from pathlib import Path
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from huggingface_hub import snapshot_download
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local = snapshot_download(repo_id="LiteFold/DisProt", repo_type="dataset")
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for jsonl in sorted(Path(local, "tables").glob("*.jsonl")):
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with jsonl.open() as f:
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for line in f:
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row = json.loads(line)
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... # row["row"] is the upstream record
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```
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## License
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CC BY 4.0 (DisProt).
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## Citation
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> Quaglia F, et al. DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation. Nucleic Acids Research, 50(D1):D480-D487, 2022.
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## Provenance
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Built from the local manifest entry `disprot` of `manifests/atlas_download_plan.json`.
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Pipeline source: `megadata-post normalize --dataset disprot --tables-only`.
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_MANIFEST.json
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{
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"category": "idp",
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"dataset_id": "disprot",
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"format": "jsonl table rows with provenance",
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"tables": [
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{
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"bytes": 26821566,
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"category": "idp",
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"dataset_id": "disprot",
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"output_file": "data/processed/idp/disprot/tables/annotation_disprot_disprot_current.json.jsonl",
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"rows": 1,
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"source_file": "annotation/disprot/disprot_current.json",
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"status": "ok"
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}
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],
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"total_rows": 1
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}
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tables/annotation_disprot_disprot_current.json.jsonl
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version https://git-lfs.github.com/spec/v1
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oid sha256:e91aea4503f33a0dc4df9de71de12e5a10b35496c4f0c366d9ff5878f15f84e4
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size 26821358
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