GOA / dataset_summary.json
anindya64's picture
Add viewer-friendly GOA Parquet sample and source manifest
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{
"source": "LiteFold/GOA",
"source_sha": "653d63a17c44418628790e65f3253cccec8f37f8",
"viewer_table_scope": "sample/index",
"sample_rows_per_annotation_file": 50000,
"annotation_sample_rows": 100000,
"splits": {
"train": 89958,
"test": 10042
},
"split_strategy": "deterministic sha256(annotation_id) % 10; bucket 0 is test, buckets 1-9 are train",
"source_files": [
{
"repo_id": "LiteFold/GOA",
"filename": ".gitattributes",
"size_bytes": 2504,
"source_sha": "653d63a17c44418628790e65f3253cccec8f37f8"
},
{
"repo_id": "LiteFold/GOA",
"filename": "goa_uniprot_all.gaf.gz",
"size_bytes": 15387303487,
"source_sha": "653d63a17c44418628790e65f3253cccec8f37f8"
},
{
"repo_id": "LiteFold/GOA",
"filename": "goa_uniprot_all.gpa.gz",
"size_bytes": 9462421263,
"source_sha": "653d63a17c44418628790e65f3253cccec8f37f8"
}
],
"source_metadata": [
{
"filename": "goa_uniprot_all.gaf.gz",
"sampled_rows": 50000,
"header_metadata": {
"gaf-version": "2.2",
"date-generated": "2026-04-10 11:33",
"generated-by": "UniProt",
"go-version": "http://purl.obolibrary.org/obo/go/releases/2026-04-06/extensions/go-plus.ofn"
}
},
{
"filename": "goa_uniprot_all.gpa.gz",
"sampled_rows": 50000,
"header_metadata": {
"gpa-version": "1.1",
"Columns": "",
"DB": "Reference(s) required 1 or greater 6",
"Generated": "2026-04-10 14:56",
"GO-version": "http://purl.obolibrary.org/obo/go/releases/2026-04-06/extensions/go-plus.ofn"
}
}
],
"format_counts": {
"GAF": 50000,
"GPA": 50000
},
"aspect_counts": {
"missing": 50000,
"F": 21511,
"P": 15246,
"C": 13243
},
"top_evidence_codes": {
"IEA": 49621,
"ECO:0000265": 25858,
"ECO:0007826": 23687,
"ECO:0000314": 387,
"IBA": 297,
"ISS": 26,
"ECO:0000250": 23,
"ECO:0000305": 19,
"IDA": 13,
"ECO:0000315": 13,
"IPI": 11,
"IMP": 9,
"HDA": 7,
"ECO:0000303": 6,
"ND": 5,
"EXP": 3,
"ECO:0000304": 3,
"ISM": 3,
"ISA": 2,
"ECO:0000266": 2
},
"db_counts": {
"UniProtKB": 100000
},
"columns": [
"annotation_id",
"source_file",
"source_format",
"source_row_number",
"db",
"db_object_id",
"db_object_symbol",
"qualifier",
"qualifiers",
"go_id",
"db_references",
"evidence_code",
"with_from",
"aspect",
"db_object_name",
"db_object_synonyms",
"db_object_type",
"taxon_ids",
"interacting_taxon_id",
"date",
"assigned_by",
"annotation_extension",
"gene_product_form_id",
"split_bucket"
]
}