anindya64 commited on
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Add files using upload-large-folder tool

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.gitattributes CHANGED
@@ -58,3 +58,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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  # Video files - compressed
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  *.mp4 filter=lfs diff=lfs merge=lfs -text
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  *.webm filter=lfs diff=lfs merge=lfs -text
 
 
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  # Video files - compressed
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  *.mp4 filter=lfs diff=lfs merge=lfs -text
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  *.webm filter=lfs diff=lfs merge=lfs -text
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+ tables/annotation_human_protein_atlas_proteinatlas.json.gz.jsonl filter=lfs diff=lfs merge=lfs -text
README.md ADDED
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+ ---
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+ license: cc-by-sa-4.0
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+ pretty_name: Human Protein Atlas
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+ size_categories:
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+ - 10K<n<100K
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+ task_categories:
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+ - other
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+ language:
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+ - en
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+ tags:
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+ - biology
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+ - proteins
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+ - annotation
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+ - human-protein-atlas
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+ - jsonl
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+ ---
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+
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+ # Human Protein Atlas
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+
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+ Per-protein annotations from the Human Protein Atlas (proteinatlas.json), normalized to newline-delimited JSON with row-level provenance.
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+
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+ Processed and uploaded by the [MegaData](https://github.com/) post-download pipeline
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+ (internal repo). Original source: <https://www.proteinatlas.org/about/download>.
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+
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+ ## Statistics
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+
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+ | | |
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+ |---|---|
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+ | Table files | 1 |
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+ | Total rows | 20,162 |
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+ | Total bytes | 148.67 MiB (155,892,614) |
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+
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+ ## Tables
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+
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+ | Table | Rows | Bytes |
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+ |---|---:|---:|
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+ | `annotation_human_protein_atlas_proteinatlas.json.gz.jsonl` | 20,162 | 148.67 MiB |
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+
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+ ## Layout
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+
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+ ```
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+ .
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+ ├── _MANIFEST.json # aggregate manifest (per-table counts)
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+ └── tables/<source_slug>.jsonl # normalized rows (one JSON object per line)
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+ ```
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+
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+ Each line in a `tables/*.jsonl` file is a JSON object with at least
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+ `dataset_id`, `row` (the raw upstream row), `row_index`, and `source_file`
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+ fields, so every row carries its upstream provenance.
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+
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+ ## Loading
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+
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+ ```bash
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+ hf download LiteFold/HumanProteinAtlas --repo-type dataset --local-dir ./human_protein_atlas
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+ ```
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+
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+ Programmatic streaming:
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+
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+ ```python
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+ import json
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+ from pathlib import Path
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+ from huggingface_hub import snapshot_download
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+
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+ local = snapshot_download(repo_id="LiteFold/HumanProteinAtlas", repo_type="dataset")
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+ for jsonl in sorted(Path(local, "tables").glob("*.jsonl")):
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+ with jsonl.open() as f:
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+ for line in f:
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+ row = json.loads(line)
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+ ... # row["row"] is the upstream record
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+ ```
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+
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+ ## License
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+
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+ CC BY-SA 4.0 (Human Protein Atlas).
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+
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+ ## Citation
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+
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+ > Uhlen M, et al. Tissue-based map of the human proteome. Science, 347(6220):1260419, 2015.
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+
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+ ## Provenance
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+
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+ Built from the local manifest entry `human_protein_atlas` of `manifests/atlas_download_plan.json`.
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+ Pipeline source: `megadata-post normalize --dataset human_protein_atlas --tables-only`.
_MANIFEST.json ADDED
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+ {
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+ "category": "annotation",
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+ "dataset_id": "human_protein_atlas",
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+ "format": "jsonl table rows with provenance",
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+ "tables": [
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+ {
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+ "bytes": 11407303,
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+ "category": "annotation",
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+ "dataset_id": "human_protein_atlas",
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+ "output_file": "data/processed/annotation/human_protein_atlas/tables/annotation_human_protein_atlas_proteinatlas.json.gz.jsonl",
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+ "rows": 20162,
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+ "source_file": "annotation/human_protein_atlas/proteinatlas.json.gz",
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+ "status": "ok"
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+ }
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+ ],
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+ "total_rows": 20162
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+ }
tables/annotation_human_protein_atlas_proteinatlas.json.gz.jsonl ADDED
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+ version https://git-lfs.github.com/spec/v1
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+ oid sha256:74f14b70e346aabca1fe35ccd0ce8bbb9307fceeb16e0291d37b0d3ed8776676
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+ size 155892614