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  # IEDB Assay Export
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- This repository contains a mirrored IEDB XML export in `iedb_export.zip`. The added Parquet files make the export loadable in the Hugging Face Dataset Viewer and the `datasets` API.
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- The default table is assay-level: each row represents one B-cell, T-cell, MHC-binding, or MHC-ligand-elution assay extracted from the XML. Reference-level article metadata and epitope-level metadata are repeated on each assay row so the table can be filtered and viewed directly.
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- IEDB states that its database content is freely available and licensed under Creative Commons Attribution 4.0 International; users should cite IEDB when using the resource.
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  ## Splits
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  | `antigen_evidence_code`, `immunogen_evidence_code`, `assay_comments` | Additional assay curation metadata. |
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  | `split_bucket` | Deterministic hash bucket; bucket 0 is test. |
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- ## Source Files Used
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- - `iedb_export.zip`
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-
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- The XML export is preserved in this repository. The preparation script is included at `scripts/prepare_iedb_dataset.py`.
 
 
 
 
 
 
 
 
 
 
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  # IEDB Assay Export
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+ IEDB is a curated database of experimentally characterized immune epitopes, including B cell, T cell, and MHC-binding data across infectious, allergic, autoimmune, and transplant contexts.
 
 
 
 
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  ## Splits
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  | `antigen_evidence_code`, `immunogen_evidence_code`, `assay_comments` | Additional assay curation metadata. |
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  | `split_bucket` | Deterministic hash bucket; bucket 0 is test. |
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+ # Citation
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+ ```
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+ @article{vita2025iedb,
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+ title = {The Immune Epitope Database ({IEDB}): 2024 update},
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+ author = {Vita, Randi and others},
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+ journal = {Nucleic Acids Research},
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+ volume = {53},
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+ number = {D1},
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+ pages = {D436--D443},
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+ year = {2025},
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+ doi = {10.1093/nar/gkae1092}
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+ }
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+ ```