Update README.md
Browse files
README.md
CHANGED
|
@@ -19,11 +19,7 @@ configs:
|
|
| 19 |
|
| 20 |
# IEDB Assay Export
|
| 21 |
|
| 22 |
-
|
| 23 |
-
|
| 24 |
-
The default table is assay-level: each row represents one B-cell, T-cell, MHC-binding, or MHC-ligand-elution assay extracted from the XML. Reference-level article metadata and epitope-level metadata are repeated on each assay row so the table can be filtered and viewed directly.
|
| 25 |
-
|
| 26 |
-
IEDB states that its database content is freely available and licensed under Creative Commons Attribution 4.0 International; users should cite IEDB when using the resource.
|
| 27 |
|
| 28 |
## Splits
|
| 29 |
|
|
@@ -139,8 +135,17 @@ For large jobs, prefer streaming or process the Parquet files with a columnar en
|
|
| 139 |
| `antigen_evidence_code`, `immunogen_evidence_code`, `assay_comments` | Additional assay curation metadata. |
|
| 140 |
| `split_bucket` | Deterministic hash bucket; bucket 0 is test. |
|
| 141 |
|
| 142 |
-
#
|
| 143 |
|
| 144 |
-
|
| 145 |
-
|
| 146 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
|
| 20 |
# IEDB Assay Export
|
| 21 |
|
| 22 |
+
IEDB is a curated database of experimentally characterized immune epitopes, including B cell, T cell, and MHC-binding data across infectious, allergic, autoimmune, and transplant contexts.
|
|
|
|
|
|
|
|
|
|
|
|
|
| 23 |
|
| 24 |
## Splits
|
| 25 |
|
|
|
|
| 135 |
| `antigen_evidence_code`, `immunogen_evidence_code`, `assay_comments` | Additional assay curation metadata. |
|
| 136 |
| `split_bucket` | Deterministic hash bucket; bucket 0 is test. |
|
| 137 |
|
| 138 |
+
# Citation
|
| 139 |
|
| 140 |
+
```
|
| 141 |
+
@article{vita2025iedb,
|
| 142 |
+
title = {The Immune Epitope Database ({IEDB}): 2024 update},
|
| 143 |
+
author = {Vita, Randi and others},
|
| 144 |
+
journal = {Nucleic Acids Research},
|
| 145 |
+
volume = {53},
|
| 146 |
+
number = {D1},
|
| 147 |
+
pages = {D436--D443},
|
| 148 |
+
year = {2025},
|
| 149 |
+
doi = {10.1093/nar/gkae1092}
|
| 150 |
+
}
|
| 151 |
+
```
|