anindya64 commited on
Commit
b5018b7
·
verified ·
1 Parent(s): d67f21a

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +14 -7
README.md CHANGED
@@ -20,11 +20,7 @@ configs:
20
 
21
  # InterPro Entries
22
 
23
- This dataset contains a viewer-friendly Parquet table derived from the InterPro current release files in this repository. Each row is one InterPro entry from `current_release/interpro.xml.gz`.
24
-
25
- The original source release files remain in the repository. The default `datasets` configuration uses the normalized Parquet files under `data/` so that the Hugging Face Dataset Viewer and `load_dataset()` can read the entries directly.
26
-
27
- Large release artifacts such as `current_release/match_complete.xml.gz`, `current_release/protein2ipr.dat.gz`, and `current_release/sites.xml.gz` are preserved as source files but are not loaded by the default table.
28
 
29
  ## Splits
30
 
@@ -193,6 +189,17 @@ print(database_info)
193
  | `short_names_dat_name` | Short name from `short_names.dat`. |
194
  | `split_bucket` | Deterministic split bucket from `sha256(interpro_id) % 10`. |
195
 
196
- ## Preparation
197
 
198
- The normalization script used to create the Parquet files is included at `scripts/prepare_interpro_dataset.py`.
 
 
 
 
 
 
 
 
 
 
 
 
20
 
21
  # InterPro Entries
22
 
23
+ InterPro integrates protein family, domain, repeat, and functional-site signatures from multiple member databases to classify and annotate protein sequences.
 
 
 
 
24
 
25
  ## Splits
26
 
 
189
  | `short_names_dat_name` | Short name from `short_names.dat`. |
190
  | `split_bucket` | Deterministic split bucket from `sha256(interpro_id) % 10`. |
191
 
192
+ # Citation
193
 
194
+ ```
195
+ @article{paysanlafosse2023interpro,
196
+ title = {{InterPro} in 2022},
197
+ author = {Paysan-Lafosse, Typhaine and Blum, Matthias and Chuguransky, Sara and others},
198
+ journal = {Nucleic Acids Research},
199
+ volume = {51},
200
+ number = {D1},
201
+ pages = {D418--D427},
202
+ year = {2023},
203
+ doi = {10.1093/nar/gkac993}
204
+ }
205
+ ```