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  1. .gitattributes +4 -0
  2. output/preprocess/Obesity/gene_data/GSE158237.csv +3 -0
  3. output/preprocess/Obsessive-Compulsive_Disorder/GSE78104.csv +3 -0
  4. output/preprocess/Osteoporosis/GSE56814.csv +3 -0
  5. output/preprocess/Pancreatic_Cancer/GSE130563.csv +3 -0
  6. output/regress/Polycystic_Ovary_Syndrome/significant_genes_condition_Thyroid_Cancer.json +0 -0
  7. output/regress/Polycystic_Ovary_Syndrome/significant_genes_condition_Type_1_Diabetes.json +0 -0
  8. output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Age.json +0 -0
  9. output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Anxiety_disorder.json +0 -0
  10. output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Arrhythmia.json +0 -0
  11. output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Bipolar_disorder.json +0 -0
  12. output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Depression.json +0 -0
  13. output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Epilepsy.json +0 -0
  14. output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Fibromyalgia.json +0 -0
  15. output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Gender.json +0 -0
  16. output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Generalized_Anxiety_Disorder.json +0 -0
  17. output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Huntingtons_Disease.json +0 -0
  18. output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Hypertension.json +0 -0
  19. output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Insomnia.json +0 -0
  20. output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Kidney_stones.json +0 -0
  21. output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Liver_cirrhosis.json +0 -0
  22. output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Migraine.json +0 -0
  23. output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_None.json +0 -0
  24. output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Obesity.json +0 -0
  25. output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Obsessive-Compulsive_Disorder.json +0 -0
  26. output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Obstructive_sleep_apnea.json +0 -0
  27. output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Osteoarthritis.json +0 -0
  28. output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Schizophrenia.json +0 -0
  29. output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Sickle_Cell_Anemia.json +0 -0
  30. output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Stroke.json +0 -0
  31. output/regress/Psoriasis/significant_genes_condition_Age.json +7 -58
  32. output/regress/Psoriasis/significant_genes_condition_Ankylosing_Spondylitis.json +41 -32
  33. output/regress/Psoriasis/significant_genes_condition_Atherosclerosis.json +29 -35
  34. output/regress/Psoriasis/significant_genes_condition_Atrial_Fibrillation.json +28 -28
  35. output/regress/Psoriasis/significant_genes_condition_Bipolar_disorder.json +26 -29
  36. output/regress/Psoriasis/significant_genes_condition_Breast_Cancer.json +29 -29
  37. output/regress/Psoriasis/significant_genes_condition_COVID-19.json +25 -34
  38. output/regress/Psoriasis/significant_genes_condition_Celiac_Disease.json +36 -24
  39. output/regress/Psoriasis/significant_genes_condition_Chronic_kidney_disease.json +36 -45
  40. output/regress/Psoriasis/significant_genes_condition_Chronic_obstructive_pulmonary_disease_(COPD).json +30 -33
  41. output/regress/Psoriasis/significant_genes_condition_Coronary_artery_disease.json +38 -35
  42. output/regress/Psoriasis/significant_genes_condition_Crohns_Disease.json +35 -35
  43. output/regress/Psoriasis/significant_genes_condition_Eczema.json +35 -26
  44. output/regress/Psoriasis/significant_genes_condition_Epilepsy.json +24 -33
  45. output/regress/Psoriasis/significant_genes_condition_Gender.json +27 -0
  46. output/regress/Psoriasis/significant_genes_condition_Huntingtons_Disease.json +36 -36
  47. output/regress/Psoriasis/significant_genes_condition_Hypertension.json +30 -426
  48. output/regress/Psoriasis/significant_genes_condition_Liver_Cancer.json +589 -31
  49. output/regress/Psoriasis/significant_genes_condition_Migraine.json +28 -37
  50. output/regress/Psoriasis/significant_genes_condition_Obesity.json +30 -30
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output/regress/Polycystic_Ovary_Syndrome/significant_genes_condition_Type_1_Diabetes.json CHANGED
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output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Age.json CHANGED
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output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Bipolar_disorder.json CHANGED
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output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Depression.json CHANGED
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output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Fibromyalgia.json CHANGED
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output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Gender.json CHANGED
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output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Generalized_Anxiety_Disorder.json CHANGED
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output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Huntingtons_Disease.json CHANGED
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output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Hypertension.json CHANGED
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output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Insomnia.json CHANGED
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output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Kidney_stones.json CHANGED
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output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Liver_cirrhosis.json CHANGED
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output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Migraine.json CHANGED
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output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_None.json CHANGED
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output/regress/Post-Traumatic_Stress_Disorder/significant_genes_condition_Obesity.json CHANGED
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output/regress/Psoriasis/significant_genes_condition_Eczema.json CHANGED
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output/regress/Psoriasis/significant_genes_condition_Epilepsy.json CHANGED
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output/regress/Psoriasis/significant_genes_condition_Gender.json ADDED
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output/regress/Psoriasis/significant_genes_condition_Huntingtons_Disease.json CHANGED
@@ -1,57 +1,57 @@
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432
  },
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  "cv_performance": {
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  "prediction": {
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  "accuracy": 86.66666666666667,
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- "precision": 90.04029304029304,
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- "recall": 93.76743390091555,
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- "f1": 91.64172988568653
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  },
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- "f1": 1.2599678748473135,
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- "jaccard": 0.6343549194951683
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  }
446
  }
447
  }
 
2
  "significant_genes": {
3
  "Variable": [
4
  "AGR3",
 
 
 
 
5
  "FRMD4A",
6
+ "FAM234B",
7
+ "CACNB4",
8
+ "CLDN4",
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  "TAC1",
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+ "DIRAS2",
 
 
 
 
 
 
 
 
 
 
 
 
 
 
11
  "ABCC5",
12
+ "CACHD1"
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  ],
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  "Coefficient": [
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+ 0.003147494858312537
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
24
  ],
25
  "Absolute Coefficient": [
26
+ 0.06097234041806083,
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+ 0.045752530481211875,
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+ 0.030692820625472187,
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  ]
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  },
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  "cv_performance": {
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  }
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  }
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  }
output/regress/Psoriasis/significant_genes_condition_Liver_Cancer.json CHANGED
@@ -2,50 +2,608 @@
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  "significant_genes": {
3
  "Variable": [
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  "AGR3",
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- "FAM234B",
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- "FRMD4A",
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  "TAC1",
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- "CACHD1",
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  "DIRAS2",
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- "CACNB4",
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- "AQP9",
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- "CLDN4"
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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24
  ],
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  "Absolute Coefficient": [
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- 0.06002038228096221,
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  ]
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  }
 
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  "significant_genes": {
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+ "OPRD1",
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+ "CCDC30",
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+ "NUP160",
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+ "TREH",
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+ "ERCC6",
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+ "FSTL3",
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+ "NPFF",
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+ "SPRR2G",
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+ "MAPK10",
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+ "SHISAL2A",
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+ "FAM225B",
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