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  1. .gitattributes +20 -0
  2. output/preprocess/Acute_Myeloid_Leukemia/GSE249638.csv +2 -2
  3. output/preprocess/Acute_Myeloid_Leukemia/gene_data/GSE249638.csv +2 -2
  4. output/preprocess/Adrenocortical_Cancer/GSE90713.csv +2 -2
  5. output/preprocess/Adrenocortical_Cancer/gene_data/GSE90713.csv +2 -2
  6. output/preprocess/Pheochromocytoma_and_Paraganglioma/GSE19422.csv +3 -0
  7. output/preprocess/Post-Traumatic_Stress_Disorder/GSE64814.csv +1 -1
  8. output/preprocess/Prostate_Cancer/GSE192817.csv +3 -0
  9. output/preprocess/Prostate_Cancer/TCGA.csv +1 -1
  10. output/preprocess/Prostate_Cancer/gene_data/GSE125341.csv +2 -2
  11. output/preprocess/Prostate_Cancer/gene_data/GSE192817.csv +2 -2
  12. output/preprocess/Prostate_Cancer/gene_data/GSE200879.csv +2 -2
  13. output/preprocess/Prostate_Cancer/gene_data/GSE201805.csv +2 -2
  14. output/preprocess/Psoriatic_Arthritis/GSE61281.csv +2 -2
  15. output/preprocess/Psoriatic_Arthritis/gene_data/GSE61281.csv +2 -2
  16. output/preprocess/Rectal_Cancer/GSE123390.csv +2 -2
  17. output/preprocess/Retinoblastoma/GSE110811.csv +3 -0
  18. output/preprocess/Retinoblastoma/gene_data/GSE110811.csv +3 -1
  19. output/preprocess/Sarcoma/GSE197147.csv +3 -0
  20. output/preprocess/Sarcoma/gene_data/GSE142162.csv +2 -2
  21. output/preprocess/Sarcoma/gene_data/GSE159848.csv +2 -2
  22. output/preprocess/Sarcoma/gene_data/GSE197147.csv +0 -0
  23. output/preprocess/Schizophrenia/GSE145554.csv +3 -0
  24. output/preprocess/Schizophrenia/gene_data/GSE193818.csv +3 -1
  25. output/preprocess/Sickle_Cell_Anemia/GSE117613.csv +3 -0
  26. output/preprocess/Sickle_Cell_Anemia/gene_data/GSE117613.csv +3 -0
  27. output/preprocess/Sjögrens_Syndrome/GSE135809.csv +3 -0
  28. output/preprocess/Sjögrens_Syndrome/GSE84844.csv +3 -0
  29. output/preprocess/Stroke/GSE58294.csv +2 -2
  30. output/preprocess/Stroke/gene_data/GSE186798.csv +2 -2
  31. output/preprocess/Thyroid_Cancer/GSE80022.csv +3 -0
  32. output/preprocess/Thyroid_Cancer/GSE82208.csv +2 -2
  33. output/preprocess/Thyroid_Cancer/TCGA.csv +1 -1
  34. output/preprocess/Thyroid_Cancer/gene_data/GSE138198.csv +3 -1
  35. output/preprocess/Thyroid_Cancer/gene_data/GSE80022.csv +3 -0
  36. output/preprocess/Thyroid_Cancer/gene_data/GSE82208.csv +2 -2
  37. output/preprocess/Type_1_Diabetes/GSE193273.csv +0 -0
  38. output/preprocess/Type_1_Diabetes/GSE232310.csv +2 -2
  39. output/preprocess/Type_1_Diabetes/gene_data/GSE123086.csv +3 -1
  40. output/preprocess/Type_2_Diabetes/GSE182120.csv +3 -0
  41. output/preprocess/Uterine_Carcinosarcoma/gene_data/GSE68950.csv +2 -2
  42. output/preprocess/Vitamin_D_Levels/GSE34450.csv +2 -2
  43. output/preprocess/Vitamin_D_Levels/gene_data/GSE129604.csv +3 -1
  44. output/preprocess/Von_Willebrand_Disease/GSE27597.csv +2 -2
  45. output/preprocess/Werner_Syndrome/gene_data/GSE48761.csv +3 -0
  46. output/regress/Breast_Cancer/significant_genes_condition_Schizophrenia.json +0 -0
  47. output/regress/Breast_Cancer/significant_genes_condition_Type_1_Diabetes.json +0 -0
  48. output/regress/Cardiovascular_Disease/significant_genes_condition_Age.json +0 -0
  49. output/regress/Cardiovascular_Disease/significant_genes_condition_Arrhythmia.json +349 -649
  50. output/regress/Cardiovascular_Disease/significant_genes_condition_Atrial_Fibrillation.json +104 -1418
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  ],
435
  "Absolute Coefficient": [
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  ]
651
  },
652
  "cv_performance": {
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  "prediction": {
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- "accuracy": 100.0,
655
- "precision": 100.0,
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- "recall": 100.0,
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- "f1": 100.0
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  },
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  "selection": {
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- "precision": 1.9967975135092626,
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- "recall": 0.9859154929577464,
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- "f1": 1.319795082237874,
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- "jaccard": 0.6664153358527368
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  }
665
  }
666
  }
 
1
  {
2
  "significant_genes": {
3
  "Variable": [
4
+ "GGT7",
5
+ "FMOD",
6
+ "SPRY2",
7
+ "ARHGAP44",
8
+ "SDR16C5",
9
+ "COL24A1",
10
+ "PXDC1",
11
+ "ZNF343",
12
+ "LINC01548",
13
+ "PCDH7",
14
+ "OR51A2",
15
+ "NXF3",
16
+ "PHLDB1",
17
+ "TRDMT1",
18
+ "HOXB6",
19
+ "TENM2",
20
+ "PRDM11",
21
+ "UMODL1-AS1",
22
+ "DGKH",
23
+ "EFNA4",
24
+ "OR5P3",
25
+ "FABP4",
26
+ "C14orf132",
27
+ "DPY19L2P3",
28
+ "TCIM",
29
+ "ISM2",
30
+ "MYL5",
31
+ "OR4X1",
32
+ "FAM118B",
33
+ "COL25A1",
34
+ "POU2F3",
35
+ "ICA1L",
36
  "RNF175",
37
+ "FGFR3",
38
+ "LHCGR",
39
+ "VANGL2",
40
+ "SNX4",
41
+ "SPIDR",
42
+ "CNBD1",
43
+ "SNAI2",
44
+ "ANAPC10",
45
+ "PRLR",
46
+ "RFX4",
47
+ "FAM83D",
48
+ "PDK1",
49
+ "TRPM1",
50
+ "NT5DC3",
51
+ "PLK1",
52
+ "CRYBA1",
53
+ "OR52D1",
54
+ "H1-5",
55
+ "SOX8",
56
+ "CLDN10",
57
+ "APOA1",
58
+ "PHAF1",
59
+ "HS3ST6",
60
+ "MINAR1",
61
+ "MYF6",
62
+ "C1orf115",
63
+ "ERAS",
64
+ "TTTY1",
65
+ "C11orf96",
66
+ "TTTY17A",
67
+ "POF1B",
68
+ "FBN1",
69
+ "HPSE2",
70
+ "NKAIN2",
71
+ "AGR2",
72
+ "CENPN",
73
+ "IMPG1",
74
+ "ZNF184",
75
+ "RHD",
76
+ "RIGI",
77
+ "TRIM66",
78
+ "DNAH7",
79
+ "MUC5AC",
80
+ "CTSL3P",
81
+ "CACNG4",
82
+ "LINC02915",
83
+ "CLLU1",
84
+ "UCHL1",
85
+ "PACSIN3",
86
+ "OR7E91P",
87
+ "NXNL2",
88
+ "LIPJ",
89
+ "RGS8",
90
+ "SCX",
91
+ "COX18",
92
+ "ONECUT1",
93
+ "ZNF705G",
94
+ "EDN3",
95
+ "OR1N1",
96
+ "ARMH4",
97
+ "VPS41",
98
+ "COL19A1",
99
+ "GARIN3",
100
+ "CLEC3B",
101
+ "ERAP2",
102
+ "GDF11",
103
+ "CERS4",
104
+ "OR1Q1",
105
+ "MINAR2",
106
+ "MAST1",
107
+ "SRL",
108
+ "ZFP69B",
109
+ "ST8SIA5",
110
+ "PSG5",
111
+ "OR4N2",
112
+ "PCNAP1",
113
+ "PCDHB10",
114
+ "DNAJB8",
115
+ "CFAP144P1",
116
+ "PECAM1",
117
+ "TNNT1"
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
118
  ],
119
  "Coefficient": [
120
+ 0.0307695381193383,
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+ 0.02234371921823132,
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+ -0.02012270154192304,
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234
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350
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  },
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  "cv_performance": {
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  "prediction": {
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  },
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  "selection": {
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  }
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  }
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  }
output/regress/Cardiovascular_Disease/significant_genes_condition_Atrial_Fibrillation.json CHANGED
@@ -1,1434 +1,120 @@
1
  {
2
  "significant_genes": {
3
  "Variable": [
4
- "CASP1",
5
- "NPTN",
6
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- "CASTOR3P",
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50
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51
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52
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55
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56
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57
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59
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60
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61
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62
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63
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66
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70
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71
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72
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73
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76
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102
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105
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107
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113
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115
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116
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126
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127
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128
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129
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131
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135
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137
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148
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159
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170
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171
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172
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174
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175
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176
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177
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178
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179
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180
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181
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182
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183
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185
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186
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190
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191
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235
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236
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240
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241
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261
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268
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270
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271
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272
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273
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274
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275
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276
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277
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278
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280
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281
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282
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285
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286
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287
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288
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290
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292
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297
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300
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303
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306
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317
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319
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- "MYH3",
366
- "FBXO10",
367
- "SLC26A3",
368
- "WHAMM",
369
- "PTK6",
370
- "XKR7",
371
- "COL26A1",
372
- "UBAP1",
373
- "CSH1",
374
- "TCERG1L",
375
- "GDPD1",
376
- "SETD4",
377
- "TMLHE",
378
- "LEO1",
379
- "RAB2B",
380
- "RBMY2EP",
381
- "FRG2",
382
- "TAAR1",
383
- "ADK",
384
- "FLJ37201",
385
- "NCOA1",
386
- "TECTB",
387
- "CDKL4",
388
- "ZBTB14",
389
- "SAP18",
390
- "B4GALNT2",
391
- "PREP",
392
- "WWC3",
393
- "WT1-AS",
394
- "KRT38",
395
- "FNDC7",
396
- "RFX3",
397
- "RAB4B",
398
- "SHISA6",
399
- "DAZ2",
400
- "PLPPR1",
401
- "CD200R1L",
402
- "ANXA4",
403
- "NUDT6",
404
- "SNAR-H",
405
- "TAF4",
406
- "TIMP4",
407
- "VPS26B",
408
- "SH3TC2",
409
- "OSTN",
410
- "EOLA2",
411
- "CDS1",
412
- "PLG",
413
- "NXF2B",
414
- "TIMM10B",
415
- "MLF1",
416
- "RAP1GDS1",
417
- "LINC01588",
418
- "GYS2",
419
- "NUFIP1",
420
- "PPY",
421
- "MTRFR",
422
- "OPCML",
423
- "RWDD4P2",
424
- "LRRC8B",
425
- "SCARNA23",
426
- "DHRS9",
427
- "PDSS2",
428
- "DEFB109A",
429
- "AADAT",
430
- "RTN4",
431
- "RIT2",
432
- "H1-4",
433
- "SLC22A7",
434
- "ABO",
435
- "APCS",
436
- "FAM187B",
437
- "SUN5",
438
- "CERS4",
439
- "ABCA10",
440
- "ZNF57",
441
- "VIPR1",
442
- "ZNF76",
443
- "SNORA47",
444
- "SNORD15B",
445
- "GADD45B",
446
- "ZNF843",
447
- "CES5A",
448
- "GRK4",
449
- "VCX",
450
- "RMDN1",
451
- "TMEM18",
452
- "CACNB3",
453
- "EFL1",
454
- "EPHB1",
455
- "SAA3P",
456
- "ZNF501",
457
- "SLC10A1",
458
- "MGST1",
459
- "STK3",
460
- "UBN1",
461
- "FAM47C",
462
- "C3orf49",
463
- "PNPLA4",
464
- "RFPL4A",
465
- "PAQR9",
466
- "SOX13",
467
- "SNORA59B",
468
- "PRICKLE1",
469
- "SAG",
470
- "CLDN8",
471
- "ZNF485",
472
- "TAS2R1",
473
- "SNX32"
474
  ],
475
  "Coefficient": [
476
- 0.1329934847518869,
477
- 0.12687816427743026,
478
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479
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480
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481
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482
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483
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484
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485
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486
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487
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488
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490
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491
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492
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493
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494
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495
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496
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497
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498
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499
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500
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501
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502
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503
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504
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505
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506
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507
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508
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510
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512
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513
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514
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515
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516
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517
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518
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519
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520
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521
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522
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523
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524
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525
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526
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527
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528
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529
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530
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531
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532
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533
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534
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535
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536
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537
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539
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540
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541
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546
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547
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548
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550
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551
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552
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562
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564
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582
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585
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593
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  "Absolute Coefficient": [
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