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  1. .gitattributes +28 -0
  2. output/preprocess/COVID-19/GSE212865.csv +3 -0
  3. output/preprocess/COVID-19/GSE213313.csv +3 -0
  4. output/preprocess/COVID-19/gene_data/GSE185658.csv +3 -0
  5. output/preprocess/COVID-19/gene_data/GSE212865.csv +3 -0
  6. output/preprocess/COVID-19/gene_data/GSE213313.csv +3 -0
  7. output/preprocess/Colon_and_Rectal_Cancer/TCGA.csv +3 -0
  8. output/preprocess/Colon_and_Rectal_Cancer/gene_data/TCGA.csv +3 -0
  9. output/preprocess/Coronary_artery_disease/gene_data/GSE109048.csv +3 -0
  10. output/preprocess/Craniosynostosis/GSE27976.csv +3 -0
  11. output/preprocess/Craniosynostosis/gene_data/GSE27976.csv +3 -0
  12. output/preprocess/Creutzfeldt-Jakob_Disease/GSE87629.csv +0 -0
  13. output/preprocess/Creutzfeldt-Jakob_Disease/clinical_data/GSE87629.csv +2 -0
  14. output/preprocess/Creutzfeldt-Jakob_Disease/gene_data/GSE62699.csv +0 -0
  15. output/preprocess/Creutzfeldt-Jakob_Disease/gene_data/GSE87629.csv +0 -0
  16. output/preprocess/Crohns_Disease/GSE169568.csv +3 -0
  17. output/preprocess/Crohns_Disease/GSE186582.csv +3 -0
  18. output/preprocess/Crohns_Disease/GSE207022.csv +3 -0
  19. output/preprocess/Crohns_Disease/GSE259353.csv +0 -0
  20. output/preprocess/Crohns_Disease/GSE83448.csv +0 -0
  21. output/preprocess/Crohns_Disease/clinical_data/GSE123086.csv +4 -0
  22. output/preprocess/Crohns_Disease/clinical_data/GSE123088.csv +4 -0
  23. output/preprocess/Crohns_Disease/clinical_data/GSE169568.csv +4 -0
  24. output/preprocess/Crohns_Disease/clinical_data/GSE186582.csv +3 -0
  25. output/preprocess/Crohns_Disease/clinical_data/GSE207022.csv +2 -0
  26. output/preprocess/Crohns_Disease/clinical_data/GSE259353.csv +4 -0
  27. output/preprocess/Crohns_Disease/clinical_data/GSE66407.csv +1 -0
  28. output/preprocess/Crohns_Disease/clinical_data/GSE83448.csv +2 -0
  29. output/preprocess/Crohns_Disease/cohort_info.json +112 -0
  30. output/preprocess/Crohns_Disease/gene_data/GSE123088.csv +1 -0
  31. output/preprocess/Crohns_Disease/gene_data/GSE169568.csv +3 -0
  32. output/preprocess/Crohns_Disease/gene_data/GSE186963.csv +1 -0
  33. output/preprocess/Crohns_Disease/gene_data/GSE207022.csv +3 -0
  34. output/preprocess/Crohns_Disease/gene_data/GSE259353.csv +0 -0
  35. output/preprocess/Crohns_Disease/gene_data/GSE66407.csv +0 -0
  36. output/preprocess/Crohns_Disease/gene_data/GSE83448.csv +0 -0
  37. output/preprocess/Cystic_Fibrosis/GSE107846.csv +0 -0
  38. output/preprocess/Cystic_Fibrosis/GSE129168.csv +0 -0
  39. output/preprocess/Cystic_Fibrosis/GSE139038.csv +0 -0
  40. output/preprocess/Cystic_Fibrosis/GSE142610.csv +0 -0
  41. output/preprocess/Cystic_Fibrosis/GSE71799.csv +3 -0
  42. output/preprocess/Cystic_Fibrosis/clinical_data/GSE100521.csv +4 -0
  43. output/preprocess/Cystic_Fibrosis/clinical_data/GSE107846.csv +4 -0
  44. output/preprocess/Cystic_Fibrosis/clinical_data/GSE129168.csv +2 -0
  45. output/preprocess/Cystic_Fibrosis/clinical_data/GSE139038.csv +3 -0
  46. output/preprocess/Cystic_Fibrosis/clinical_data/GSE142610.csv +2 -0
  47. output/preprocess/Cystic_Fibrosis/clinical_data/GSE60690.csv +4 -0
  48. output/preprocess/Cystic_Fibrosis/clinical_data/GSE67698.csv +2 -0
  49. output/preprocess/Cystic_Fibrosis/clinical_data/GSE71799.csv +135 -0
  50. output/preprocess/Cystic_Fibrosis/clinical_data/GSE76347.csv +2 -0
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+ ,GSM3494884,GSM3494885,GSM3494886,GSM3494887,GSM3494888,GSM3494889,GSM3494890,GSM3494891,GSM3494892,GSM3494893,GSM3494894,GSM3494895,GSM3494896,GSM3494897,GSM3494898,GSM3494899,GSM3494900,GSM3494901,GSM3494902,GSM3494903,GSM3494904,GSM3494905,GSM3494906,GSM3494907,GSM3494908,GSM3494909,GSM3494910,GSM3494911,GSM3494912,GSM3494913,GSM3494914,GSM3494915,GSM3494916,GSM3494917,GSM3494918,GSM3494919,GSM3494920,GSM3494921,GSM3494922,GSM3494923,GSM3494924,GSM3494925,GSM3494926,GSM3494927,GSM3494928,GSM3494929,GSM3494930,GSM3494931,GSM3494932,GSM3494933,GSM3494934,GSM3494935,GSM3494936,GSM3494937,GSM3494938,GSM3494939,GSM3494940,GSM3494941,GSM3494942,GSM3494943,GSM3494944,GSM3494945,GSM3494946,GSM3494947,GSM3494948,GSM3494949,GSM3494950,GSM3494951,GSM3494952,GSM3494953,GSM3494954,GSM3494955,GSM3494956,GSM3494957,GSM3494958,GSM3494959,GSM3494960,GSM3494961,GSM3494962,GSM3494963,GSM3494964,GSM3494965,GSM3494966,GSM3494967,GSM3494968,GSM3494969,GSM3494970,GSM3494971,GSM3494972,GSM3494973,GSM3494974,GSM3494975,GSM3494976,GSM3494977,GSM3494978,GSM3494979,GSM3494980,GSM3494981,GSM3494982,GSM3494983,GSM3494984,GSM3494985,GSM3494986,GSM3494987,GSM3494988,GSM3494989,GSM3494990,GSM3494991,GSM3494992,GSM3494993,GSM3494994,GSM3494995,GSM3494996,GSM3494997,GSM3494998,GSM3494999,GSM3495000,GSM3495001,GSM3495002,GSM3495003,GSM3495004,GSM3495005,GSM3495006,GSM3495007,GSM3495008,GSM3495009,GSM3495010,GSM3495011,GSM3495012,GSM3495013,GSM3495014,GSM3495015,GSM3495016,GSM3495017,GSM3495018,GSM3495019,GSM3495020,GSM3495021,GSM3495022,GSM3495023,GSM3495024,GSM3495025,GSM3495026,GSM3495027,GSM3495028,GSM3495029,GSM3495030,GSM3495031,GSM3495032,GSM3495033,GSM3495034,GSM3495035,GSM3495036,GSM3495037,GSM3495038,GSM3495039,GSM3495040,GSM3495041,GSM3495042,GSM3495043,GSM3495044,GSM3495045,GSM3495046,GSM3495047,GSM3495048,GSM3495049,GSM3495050,GSM3495051,GSM3495052,GSM3495053,GSM3495054,GSM3495055,GSM3495056,GSM3495057,GSM3495058,GSM3495059,GSM3495060,GSM3495061,GSM3495062,GSM3495063,GSM3495064,GSM3495065,GSM3495066,GSM3495067,GSM3495068,GSM3495069,GSM3495070,GSM3495071,GSM3495072,GSM3495073,GSM3495074,GSM3495075,GSM3495076,GSM3495077,GSM3495078,GSM3495079,GSM3495080,GSM3495081,GSM3495082,GSM3495083,GSM3495084,GSM3495085,GSM3495086,GSM3495087
2
+ Crohns_Disease,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,,,,,,,,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,0.0,0.0,,,0.0,,0.0,,,0.0,,0.0,0.0,,,0.0,,,,,,0.0,0.0,0.0,,,,,,0.0,,,,,0.0,0.0
3
+ Age,56.0,,20.0,51.0,37.0,61.0,,31.0,56.0,41.0,61.0,,80.0,53.0,61.0,73.0,60.0,76.0,77.0,74.0,69.0,77.0,81.0,70.0,82.0,69.0,82.0,67.0,67.0,78.0,67.0,74.0,,51.0,72.0,66.0,80.0,36.0,67.0,31.0,31.0,45.0,56.0,65.0,53.0,48.0,50.0,76.0,,24.0,42.0,76.0,22.0,,23.0,34.0,43.0,47.0,24.0,55.0,48.0,58.0,30.0,28.0,41.0,63.0,55.0,55.0,67.0,47.0,46.0,49.0,23.0,68.0,39.0,24.0,36.0,58.0,38.0,27.0,67.0,61.0,69.0,63.0,60.0,17.0,10.0,9.0,13.0,10.0,13.0,15.0,12.0,13.0,81.0,94.0,51.0,40.0,,97.0,23.0,93.0,58.0,28.0,54.0,15.0,8.0,11.0,12.0,8.0,14.0,8.0,10.0,14.0,13.0,40.0,52.0,42.0,29.0,43.0,41.0,54.0,42.0,49.0,45.0,56.0,64.0,71.0,48.0,20.0,53.0,32.0,26.0,28.0,47.0,24.0,48.0,,19.0,41.0,38.0,,15.0,12.0,13.0,,11.0,,16.0,11.0,,35.0,26.0,39.0,46.0,42.0,20.0,69.0,69.0,47.0,47.0,56.0,54.0,53.0,50.0,22.0,62.0,74.0,57.0,47.0,70.0,50.0,52.0,43.0,57.0,53.0,70.0,41.0,61.0,39.0,58.0,55.0,63.0,60.0,43.0,68.0,67.0,50.0,67.0,51.0,59.0,44.0,35.0,83.0,78.0,88.0,41.0,60.0,72.0,53.0,73.0,56.0,38.0,53.0
4
+ Gender,1.0,,0.0,0.0,1.0,1.0,,1.0,0.0,0.0,0.0,,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,,1.0,1.0,1.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,,0.0,0.0,1.0,1.0,,0.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,,1.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,,0.0,0.0,0.0,,0.0,1.0,0.0,,1.0,,1.0,1.0,,0.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0
output/preprocess/Crohns_Disease/clinical_data/GSE169568.csv ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ ,GSM5209429,GSM5209430,GSM5209431,GSM5209432,GSM5209433,GSM5209434,GSM5209435,GSM5209436,GSM5209437,GSM5209438,GSM5209439,GSM5209440,GSM5209441,GSM5209442,GSM5209443,GSM5209444,GSM5209445,GSM5209446,GSM5209447,GSM5209448,GSM5209449,GSM5209450,GSM5209451,GSM5209452,GSM5209453,GSM5209454,GSM5209455,GSM5209456,GSM5209457,GSM5209458,GSM5209459,GSM5209460,GSM5209461,GSM5209462,GSM5209463,GSM5209464,GSM5209465,GSM5209466,GSM5209467,GSM5209468,GSM5209469,GSM5209470,GSM5209471,GSM5209472,GSM5209473,GSM5209474,GSM5209475,GSM5209476,GSM5209477,GSM5209478,GSM5209479,GSM5209480,GSM5209481,GSM5209482,GSM5209483,GSM5209484,GSM5209485,GSM5209486,GSM5209487,GSM5209488,GSM5209489,GSM5209490,GSM5209491,GSM5209492,GSM5209493,GSM5209494,GSM5209495,GSM5209496,GSM5209497,GSM5209498,GSM5209499,GSM5209500,GSM5209501,GSM5209502,GSM5209503,GSM5209504,GSM5209505,GSM5209506,GSM5209507,GSM5209508,GSM5209509,GSM5209510,GSM5209511,GSM5209512,GSM5209513,GSM5209514,GSM5209515,GSM5209516,GSM5209517,GSM5209518,GSM5209519,GSM5209520,GSM5209521,GSM5209522,GSM5209523,GSM5209524,GSM5209525,GSM5209526,GSM5209527,GSM5209528,GSM5209529,GSM5209530,GSM5209531,GSM5209532,GSM5209533,GSM5209534,GSM5209535,GSM5209536,GSM5209537,GSM5209538,GSM5209539,GSM5209540,GSM5209541,GSM5209542,GSM5209543,GSM5209544,GSM5209545,GSM5209546,GSM5209547,GSM5209548,GSM5209549,GSM5209550,GSM5209551,GSM5209552,GSM5209553,GSM5209554,GSM5209555,GSM5209556,GSM5209557,GSM5209558,GSM5209559,GSM5209560,GSM5209561,GSM5209562,GSM5209563,GSM5209564,GSM5209565,GSM5209566,GSM5209567,GSM5209568,GSM5209569,GSM5209570,GSM5209571,GSM5209572,GSM5209573,GSM5209574,GSM5209575,GSM5209576,GSM5209577,GSM5209578,GSM5209579,GSM5209580,GSM5209581,GSM5209582,GSM5209583,GSM5209584,GSM5209585,GSM5209586,GSM5209587,GSM5209588,GSM5209589,GSM5209590,GSM5209591,GSM5209592,GSM5209593,GSM5209594,GSM5209595,GSM5209596,GSM5209597,GSM5209598,GSM5209599,GSM5209600,GSM5209601,GSM5209602,GSM5209603,GSM5209604,GSM5209605,GSM5209606,GSM5209607,GSM5209608,GSM5209609,GSM5209610,GSM5209611,GSM5209612,GSM5209613,GSM5209614,GSM5209615,GSM5209616,GSM5209617,GSM5209618,GSM5209619,GSM5209620,GSM5209621,GSM5209622,GSM5209623,GSM5209624,GSM5209625,GSM5209626,GSM5209627,GSM5209628,GSM5209629,GSM5209630,GSM5209631,GSM5209632,GSM5209633
2
+ Crohns_Disease,0.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,1.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0
3
+ Age,20.0,39.0,56.0,31.0,22.0,32.0,32.0,30.0,30.0,18.0,60.0,33.0,27.0,30.0,34.0,57.0,27.0,20.0,30.0,27.0,32.0,72.0,35.0,24.0,21.0,62.0,41.0,22.0,18.0,20.0,29.0,46.0,31.0,34.0,32.0,49.0,76.0,23.0,37.0,30.0,64.0,23.0,24.0,26.0,19.0,60.0,17.0,41.0,48.0,26.0,35.0,22.0,73.0,69.0,57.0,50.0,27.0,69.0,28.0,51.0,64.0,52.0,55.0,47.0,61.0,29.0,36.0,24.0,24.0,21.0,54.0,24.0,78.0,23.0,27.0,21.0,34.0,51.0,31.0,40.0,24.0,24.0,23.0,33.0,25.0,23.0,41.0,32.0,23.0,36.0,26.0,23.0,36.0,40.0,26.0,18.0,35.0,24.0,32.0,61.0,34.0,54.0,21.0,28.0,38.0,69.0,28.0,27.0,33.0,24.0,19.0,32.0,40.0,39.0,29.0,26.0,26.0,18.0,38.0,59.0,53.0,41.0,24.0,28.0,30.0,31.0,47.0,76.0,27.0,36.0,19.0,38.0,24.0,33.0,23.0,20.0,38.0,68.0,23.0,39.0,23.0,23.0,39.0,38.0,20.0,54.0,41.0,48.0,74.0,69.0,42.0,25.0,35.0,30.0,23.0,36.0,61.0,37.0,50.0,46.0,22.0,21.0,44.0,24.0,24.0,23.0,47.0,21.0,19.0,56.0,25.0,54.0,51.0,43.0,53.0,66.0,69.0,22.0,56.0,51.0,69.0,53.0,61.0,52.0,42.0,56.0,58.0,20.0,17.0,40.0,44.0,45.0,19.0,28.0,57.0,41.0,34.0,54.0,59.0,20.0,60.0,71.0,68.0,34.0,57.0
4
+ Gender,0.0,1.0,0.0,0.0,1.0,1.0,0.0,0.0,1.0,0.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,1.0,0.0,1.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,0.0,1.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,1.0,0.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,0.0,1.0,1.0,0.0,1.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,0.0,0.0,1.0,1.0,0.0,1.0,1.0,0.0,1.0,0.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,1.0,0.0,0.0,0.0
output/preprocess/Crohns_Disease/clinical_data/GSE186582.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ 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3
+ Gender,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,0.0,1.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,1.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,1.0,1.0,1.0,0.0,0.0,0.0,1.0,1.0,0.0,0.0,0.0
output/preprocess/Crohns_Disease/clinical_data/GSE207022.csv ADDED
@@ -0,0 +1,2 @@
 
 
 
1
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output/preprocess/Cystic_Fibrosis/GSE107846.csv ADDED
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+ ,0,1,2,3,4,5,6,7,8
2
+ Cystic_Fibrosis,,,,1.0,,1.0,,,1.0
3
+ Age,35.0,,,,,,,,
output/preprocess/Cystic_Fibrosis/clinical_data/GSE142610.csv ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ Sample_1,Sample_2,Sample_3,Sample_4,Sample_5,Sample_6,Sample_7,Sample_8,Sample_9,Sample_10,Sample_11,Sample_12,Sample_13,Sample_14
2
+ 1.0,,0.0,1.0,,0.0,,0.0,0.0,1.0,0.0,0.0,,0.0
output/preprocess/Cystic_Fibrosis/clinical_data/GSE60690.csv ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ ,0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29
2
+ Cystic_Fibrosis,0.92156,-0.79274,2.33374,-1.36666,2.86073,1.08383,1.15792,1.516,-0.77528,-0.35251,0.95176,-0.78019,-0.45468,1.14497,-0.47971,0.08552,-0.74197,-1.29147,0.81747,1.52976,1.78443,0.8515,1.98295,0.86374,0.94161,1.10084,-0.5591,0.84926,0.86596,1.3764
3
+ Age,38.2,9.2,22.5,14.4,33.8,18.6,27.7,33.5,17.8,24.1,16.4,8.7,10.4,46.3,19.0,17.1,10.2,16.7,39.7,39.3,25.4,41.2,18.1,21.5,17.3,32.4,19.8,34.3,25.3,46.7
4
+ Gender,1.0,0.0,,,,,,,,,,,,,,,,,,,,,,,,,,,,
output/preprocess/Cystic_Fibrosis/clinical_data/GSE67698.csv ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ ,GSM1946634,GSM1946635,GSM1946636,GSM1946637,GSM1946638,GSM1946639,GSM1946640,GSM1946641,GSM1946642,GSM1946643,GSM1946644,GSM1946645,GSM1946646,GSM1946647,GSM1946648,GSM1946649,GSM1946650,GSM1946651,GSM1946652,GSM1946653,GSM1946654,GSM1946655,GSM1946656,GSM1946657,GSM1946658,GSM1946659,GSM1946660,GSM1946661,GSM1946662,GSM1946663,GSM1946664,GSM1946665,GSM1946666,GSM1946667,GSM1946668,GSM1946669,GSM1946670,GSM1946671,GSM1946672,GSM1946673,GSM1946674,GSM1946675,GSM1946676,GSM1946677,GSM1946678,GSM1946679,GSM1946680,GSM1946681,GSM1946682,GSM1946683,GSM1946684,GSM1946685,GSM1946686,GSM1946687,GSM1946688,GSM1946689,GSM1946690,GSM1946691,GSM1946692,GSM1946693,GSM1946694,GSM1946695,GSM1946696,GSM1946697,GSM1946698,GSM1946699,GSM1946700,GSM1946701,GSM1946702,GSM1946703,GSM1946704,GSM1946705,GSM1946706,GSM1946707,GSM1946708,GSM1946709,GSM1946710,GSM1946711,GSM1946712,GSM1946713,GSM1946714,GSM1946715,GSM1946716,GSM1946717,GSM1946718,GSM1946719,GSM1946720,GSM1946721,GSM1946722,GSM1946723,GSM1946724,GSM1946725,GSM1946726,GSM1946727,GSM1946728,GSM1946729,GSM1946730,GSM1946731,GSM1946732,GSM1946733,GSM1946734,GSM1946735,GSM1946736,GSM1946737,GSM1946738,GSM1946739,GSM1946740,GSM1946741,GSM1946742,GSM1946743,GSM1946744,GSM1946745,GSM1946746,GSM1946747,GSM1946748,GSM1946749,GSM1946750,GSM1946751,GSM1946752,GSM1946753,GSM1946754,GSM1946755
2
+ Cystic_Fibrosis,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0
output/preprocess/Cystic_Fibrosis/clinical_data/GSE71799.csv ADDED
@@ -0,0 +1,135 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ,CF_Status
2
+ GSM1845886,0
3
+ GSM1845887,0
4
+ GSM1845888,0
5
+ GSM1845889,0
6
+ GSM1845890,0
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8
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21
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+ GSM1845908,0
25
+ GSM1845909,0
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+ GSM1845910,0
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29
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30
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+ GSM1845917,1
34
+ GSM1845918,1
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37
+ GSM1845921,1
38
+ GSM1845922,1
39
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42
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47
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51
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52
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54
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56
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60
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61
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62
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63
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70
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75
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76
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77
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78
+ GSM1845962,1
79
+ GSM1845963,1
80
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81
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82
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83
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84
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85
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90
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91
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94
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98
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100
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101
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103
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104
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107
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+ GSM1846016,1
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+ GSM1846017,1
134
+ GSM1846018,1
135
+ GSM1846019,1
output/preprocess/Cystic_Fibrosis/clinical_data/GSE76347.csv ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ 0
2
+ 1.0