web_data/sample_details/1AM0.json

{
  "contact_entropy_mean": "0.1353890450115417",
  "contact_persistence_mean": "0.2714285714285714",
  "dynamic_qc_status": "ready",
  "dynamics_preview_gif_path": "",
  "dynamics_preview_mp4_path": "visualizations/dynamics_preview/1AM0.mp4",
  "dynamics_preview_status": "ready",
  "family_group": "aptamer_lt25",
  "high_quality_flag": "yes",
  "label_8class": "aptamer",
  "md_simulation_status": "complete_100ns",
  "method": "Solution NMR",
  "original_main_type": "aptamer",
  "p_adaptability_mean": "1.5894742846488952",
  "p_rmsf_mean": "1.7304704904556274",
  "pdb_id": "1AM0",
  "primary_xtc_100ps_rna_only_path": "trajectories/primary_xtc_100ps_rna_only/1AM0.xtc",
  "primary_xtc_status": "ready",
  "priority_tier": "Tier1_core_functional",
  "resolution": "",
  "rfam": "",
  "rg_mean": "2.3548291988905814",
  "rmsd_mean": "2.872617721557617",
  "rna_only_pdb_path": "structures/rna_only_pdb/1AM0.pdb",
  "rna_type": "aptamer",
  "rna_type_confidence": "high",
  "rna_type_evidence": "aptamer",
  "rna_type_source": "RNAmd source annotation",
  "sequence": "GGGAAGAAACUGUAGC",
  "size_nt": "16.0",
  "source_pdb_url": "https://www.rcsb.org/structure/1AM0",
  "standardized_name": "",
  "traj_frames_used": "10",
  "traj_failed": "0",
  "rmsd_std": "0.9583421349525452",
  "rmsd_max": "3.233114957809448",
  "rg_std": "0.0077122513534975",
  "rg_min": "2.341901875374483",
  "rg_max": "2.368669633888892",
  "conformational_variability": "0.9660543863060428",
  "contact_persistence_std": "0.4091138590415436",
  "contact_entropy_max": "0.9709505944546686",
  "misato_frames_used": "10.0",
  "misato_failed": "0.0",
  "misato_p_atom_count": "15.0",
  "p_adaptability_std": "0.3842415746183467",
  "p_adaptability_min": "0.8345878720283508",
  "p_adaptability_q25": "1.3945754170417786",
  "p_adaptability_median": "1.6781082153320312",
  "p_adaptability_q75": "1.914451777935028",
  "p_adaptability_max": "2.1552393436431885",
  "p_rmsf_std": "0.3952294449533707",
  "p_rmsf_min": "1.000474452972412",
  "p_rmsf_q25": "1.4855943322181702",
  "p_rmsf_median": "1.917508125305176",
  "p_rmsf_q75": "2.0763951539993286",
  "p_rmsf_max": "2.2969987392425537",
  "p_high_adapt_frac_0p2nm": "1.0",
  "p_high_adapt_frac_0p4nm": "1.0",
  "base_centroid_adaptability_mean": "2.796400944693601",
  "base_centroid_adaptability_std": "0.5060211727692714",
  "base_centroid_adaptability_min": "0.7971342206001282",
  "base_centroid_adaptability_q25": "2.436941146850586",
  "base_centroid_adaptability_median": "2.778377056121826",
  "base_centroid_adaptability_q75": "3.134228825569153",
  "base_centroid_adaptability_max": "4.578845500946045",
  "adjacent_p_distance_std_mean": "0.4406213276088238",
  "adjacent_p_distance_std_std": "0.2679105788099208",
  "adjacent_p_distance_std_min": "0.0357772521674633",
  "adjacent_p_distance_std_q25": "0.2201828584074974",
  "adjacent_p_distance_std_median": "0.5789968371391296",
  "adjacent_p_distance_std_q75": "0.6634584963321686",
  "adjacent_p_distance_std_max": "0.7983474731445312",
  "adjacent_p_distance_mean": "0.797847330570221",
  "long_contact_persistence_mean": "0.0487179487179487",
  "long_contact_persistence_std": "0.0887861009906707",
  "long_contact_persistence_min": "0.0",
  "long_contact_persistence_q25": "0.0",
  "long_contact_persistence_median": "0.0",
  "long_contact_persistence_q75": "0.1",
  "long_contact_persistence_max": "0.5",
  "long_contact_switching_mean": "0.1538461538461538",
  "long_contact_switching_std": "0.2424724714442529",
  "long_contact_switching_min": "0.0",
  "long_contact_switching_q25": "0.0",
  "long_contact_switching_median": "0.0",
  "long_contact_switching_q75": "0.36",
  "long_contact_switching_max": "1.0",
  "long_contact_entropy_mean": "0.1857887425193604",
  "long_contact_entropy_max": "1.0",
  "stable_long_contact_frac": "0.0",
  "transient_long_contact_frac": "0.0897435897435897",
  "initial_long_contact_frac": "0.0769230769230769",
  "lost_initial_contact_frac": "0.0384615384615384",
  "gained_contact_frac": "0.0"
}