# Datasets  
This directory includes all the downstream task datasets of the LucaOne paper (https://www.nature.com/articles/s42256-025-01044-4).

---
configs:

- config_name: CentralDogma    
  data_files:
  - split: train
    path: dataset/CentralDogma/gene_protein/binary_class/train/train.csv
  - split: dev
    path: dataset/CentralDogma/gene_protein/binary_class/dev/dev.csv
  - split: test
    path: dataset/CentralDogma/gene_protein/binary_class/test/test.csv
  - split: label_info
    dataset/CentralDogma/gene_protein/binary_class/label.txt

- config_name: CentralDogmaCDSProtein      
  data_files:
  - split: train
    path: dataset/CentralDogmaCDSProtein/gene_protein/binary_class/train/train.csv
  - split: dev
    path: dataset/CentralDogmaCDSProtein/gene_protein/binary_class/dev/dev.csv
  - split: test
    path: dataset/CentralDogmaCDSProtein/gene_protein/binary_class/test/test.csv
  - split: label_info
    dataset/CentralDogmaCDSProtein/gene_protein/binary_class/label.txt

- config_name: CentralDogmaV2      
  data_files:
  - split: train
    path: dataset/CentralDogmaV2/gene_protein/binary_class/train/train.csv
  - split: dev
    path: dataset/CentralDogmaV2/gene_protein/binary_class/dev/dev.csv
  - split: test
    path: dataset/CentralDogmaV2/gene_protein/binary_class/test/test.csv
  - split: label_info
    dataset/CentralDogmaV2/gene_protein/binary_class/label.txt

- config_name: CrossSpeciesHomologousGenePairsV1     
  data_files:
  - split: train
    path: dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/train/train.csv
  - split: dev
    path: dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/dev/dev.csv
  - split: test
    path: dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/test/test.csv
  - split: label_info
    dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/label.txt

- config_name: CrossSpeciesHomologousGenePairsV2        
  data_files:
  - split: train
    path: dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/train/train.csv
  - split: dev
    path: dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/dev/dev.csv
  - split: test
    path: dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/test/test.csv
  - split: label_info
    dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/label.txt

- config_name: GenusTax        
  data_files:
  - split: train
    path: dataset/GenusTax/gene/multi_class/train/train.csv
  - split: dev
    path: dataset/GenusTax/gene/multi_class/dev/dev.csv
  - split: test
    path: dataset/GenusTax/gene/multi_class/test/test.csv
  - split: label_info
    dataset/GenusTax/gene/multi_class/label.txt

- config_name: InfA       
  data_files:
  - split: train
    path: dataset/InfA/gene_gene/binary_class/train/train.csv
  - split: dev
    path: dataset/InfA/gene_gene/binary_class/dev/dev.csv
  - split: test
    path: dataset/InfA/gene_gene/binary_class/test/test.csv
  - split: label_info
    dataset/InfA/gene_gene/binary_class/label.txt

- config_name: ncRNAFam          
  data_files: 
  - split: train
    path: dataset/ncRNAFam/gene/multi_class/train/train.csv
  - split: dev
    path: dataset/ncRNAFam/gene/multi_class/dev/dev.csv
  - split: test
    path: dataset/ncRNAFam/gene/multi_class/test/test.csv
  - split: label_info
    dataset/ncRNAFam/gene/multi_class/label.txt

- config_name: ncRPI        
  data_files:
  - split: train
    path: dataset/ncRPI/gene_protein/binary_class/train/train.csv
  - split: dev
    path: dataset/ncRPI/gene_protein/binary_class/dev/dev.csv
  - split: test
    path: dataset/ncRPI/gene_protein/binary_class/test/test.csv
  - split: label_info
    dataset/ncRPI/gene_protein/binary_class/label.txt

- config_name: PPI     
  data_files:
  - split: train
    path: dataset/PPI/protein/binary_class/train/train.csv
  - split: dev
    path: dataset/PPI/protein/binary_class/dev/dev.csv
  - split: test
    path: dataset/PPI/protein/binary_class/test/test.csv
  - split: label_info
    dataset/PPI/protein/binary_class/label.txt

- config_name: ProtLoc
  data_files:
  - split: train
    path: dataset/ProtLoc/protein/multi_class/train/train.csv
  - split: dev
    path: dataset/ProtLoc/protein/multi_class/dev/dev.csv
  - split: test
    path: dataset/ProtLoc/protein/multi_class/test/test.csv
  - split: label_info
    dataset/ProtLoc/protein/multi_class/label.txt

- config_name: ProtLocCDSGene        
  data_files:
  - split: train
    path: dataset/ProtLocCDSGene/gene/multi_class/train/train.csv
  - split: dev
    path: dataset/ProtLocCDSGene/gene/multi_class/dev/dev.csv
  - split: test
    path: dataset/ProtLocCDSGene/gene/multi_class/test/test.csv
  - split: label_info
    dataset/ProtLocCDSGene/gene/multi_class/label.txt
 
- config_name: ProtLocCDSProt           
  data_files:
  - split: train
    path: dataset/ProtLocCDSProt/protein/multi_class/train/train.csv
  - split: dev
    path: dataset/ProtLocCDSProt/protein/multi_class/dev/dev.csv
  - split: test
    path: dataset/ProtLocCDSProt/protein/multi_class/test/test.csv
  - split: label_info
    dataset/ProtLocCDSProt/protein/multi_class/label.txt

- config_name: ProtStab       
  data_files:
  - split: train
    path: dataset/ProtStab/protein/regression/train/train.csv
  - split: dev
    path: dataset/ProtStab/protein/regression/dev/dev.csv
  - split: test
    path: dataset/ProtStab/protein/regression/test/test.csv
  - split: label_info
    dataset/ProtStab/protein/regression/label.txt

- config_name: SpeciesTax       
  data_files:
  - split: train
    path: dataset/SpeciesTax/gene/multi_class/train/train.csv
  - split: dev
    path: dataset/SpeciesTax/gene/multi_class/dev/dev.csv
  - split: test
    path: dataset/SpeciesTax/gene/multi_class/test/test.csv
  - split: label_info
    dataset/SpeciesTax/gene/multi_class/label.txt

- config_name: SupKTax          
  data_files:
  - split: train
    path: dataset/SupKTax/gene/multi_class/train/train.csv
  - split: dev
    path: dataset/SupKTax/gene/multi_class/dev/dev.csv
  - split: test
    path: dataset/SupKTax/gene/multi_class/test/test.csv
  - split: label_info
    dataset/SupKTax/gene/multi_class/label.txt

---

# LucaOne-Downstream-Task-Datasets
Usage:

```python
from datasets import load_dataset

# load PPI dataset
ds = load_dataset("LucaGroup/LucaOne-Downstream-Task-Datasets", name="ncRPI")
```