Update README.md
Browse files
README.md
CHANGED
|
@@ -1,3 +1,65 @@
|
|
| 1 |
-
---
|
| 2 |
-
license:
|
| 3 |
-
---
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
license: cc-by-4.0
|
| 3 |
+
---
|
| 4 |
+
|
| 5 |
+
# Biomedical Text Publication Classification Dataset
|
| 6 |
+
|
| 7 |
+
## Overview
|
| 8 |
+
This dataset contains text data for classifying biomedical publications. Each sample is stored in a separate text file, with features space-separated on a single line. The dataset is structured to be compatible with Lumina AI's Random Contrast Learning (RCL) algorithm via the PrismRCL application or API.
|
| 9 |
+
|
| 10 |
+
## Dataset Structure
|
| 11 |
+
The dataset is organized into the following structure:
|
| 12 |
+
|
| 13 |
+
Cancer_Documents_Classification/
|
| 14 |
+
train_data/
|
| 15 |
+
category_1/
|
| 16 |
+
sample_0.txt
|
| 17 |
+
sample_1.txt
|
| 18 |
+
...
|
| 19 |
+
category_2/
|
| 20 |
+
sample_0.txt
|
| 21 |
+
sample_1.txt
|
| 22 |
+
...
|
| 23 |
+
test_data/
|
| 24 |
+
category_1/
|
| 25 |
+
sample_0.txt
|
| 26 |
+
sample_1.txt
|
| 27 |
+
...
|
| 28 |
+
category_2/
|
| 29 |
+
sample_0.txt
|
| 30 |
+
sample_1.txt
|
| 31 |
+
...
|
| 32 |
+
|
| 33 |
+
**Note**: All text file names must be unique across all category folders.
|
| 34 |
+
|
| 35 |
+
## Features
|
| 36 |
+
- **Tabular Data**: Each text file contains space-separated values representing the features of a sample.
|
| 37 |
+
- **Categories**: There are multiple categories, each represented by a separate folder based on the type of publication.
|
| 38 |
+
|
| 39 |
+
## Usage
|
| 40 |
+
Here is an example of how to load the dataset using PrismRCL:
|
| 41 |
+
|
| 42 |
+
```bash
|
| 43 |
+
C:\PrismRCL\PrismRCL.exe chisquared rclticks=10 boxdown=0 data=C:\path\to\Cancer_Documents_Classification\train_data testdata=C:\path\to\Cancer_Documents_Classification\test_data savemodel=C:\path\to\models\mymodel.classify log=C:\path\to\log_files stopwhendone
|
| 44 |
+
```
|
| 45 |
+
|
| 46 |
+
Explanation:
|
| 47 |
+
- `C:\PrismRCL\PrismRCL.exe`: classification application
|
| 48 |
+
- `chisquared`: training evaluation method
|
| 49 |
+
- `rclticks=10`: RCL training parameter
|
| 50 |
+
- `boxdown=0`: RCL training parameter
|
| 51 |
+
- `data=C:\path\to\Cancer_Documents_Classification\train_data`: path to training data
|
| 52 |
+
- `testdata=C:\path\to\Cancer_Documents_Classification\test_data`: path to testing data
|
| 53 |
+
- `savemodel=C:\path\to\models\mymodel.classify`: path to save resulting model
|
| 54 |
+
- `log=C:\path\to\log_files`: path to logfiles
|
| 55 |
+
- `stopwhendone`: ends the PrismRCL session when training is done
|
| 56 |
+
|
| 57 |
+
## License
|
| 58 |
+
This dataset is licensed under the Creative Commons Attribution 4.0 International License. See the LICENSE file for more details.
|
| 59 |
+
|
| 60 |
+
## Original Source
|
| 61 |
+
This dataset was originally sourced from the [Kaggle Dataset Repository](https://www.kaggle.com/datasets/falgunipatel19/biomedical-text-publication-classification/data). Please cite the original source if you use this dataset in your research or applications.
|
| 62 |
+
|
| 63 |
+
## Additional Information
|
| 64 |
+
The data values have been prepared to ensure compatibility with PrismRCL. No normalization is required as of version 2.4.0.
|
| 65 |
+
```
|