Upload 23 files
Browse files- .gitattributes +4 -0
- QuPathProject-NoAnnotations/classifiers/classes.json +11 -0
- QuPathProject-NoAnnotations/data/1/data.qpdata +0 -0
- QuPathProject-NoAnnotations/data/1/server.json +1 -0
- QuPathProject-NoAnnotations/data/1/summary.json +1 -0
- QuPathProject-NoAnnotations/data/1/thumbnail.jpg +3 -0
- QuPathProject-NoAnnotations/data/2/data.qpdata +0 -0
- QuPathProject-NoAnnotations/data/2/server.json +1 -0
- QuPathProject-NoAnnotations/data/2/summary.json +1 -0
- QuPathProject-NoAnnotations/data/2/thumbnail.jpg +3 -0
- QuPathProject-NoAnnotations/data/6/data.qpdata +0 -0
- QuPathProject-NoAnnotations/data/6/server.json +1 -0
- QuPathProject-NoAnnotations/data/6/summary.json +1 -0
- QuPathProject-NoAnnotations/data/6/thumbnail.jpg +3 -0
- QuPathProject-NoAnnotations/data/7/data.qpdata +0 -0
- QuPathProject-NoAnnotations/data/7/server.json +1 -0
- QuPathProject-NoAnnotations/data/7/summary.json +1 -0
- QuPathProject-NoAnnotations/data/7/thumbnail.jpg +3 -0
- QuPathProject-NoAnnotations/project.qpproj +325 -0
- QuPathProject-NoAnnotations/project.qpproj.backup +325 -0
- WSI/bari_sample_slide.ome.tif +3 -0
- WSI/cologne_sample_slide.ome.tif +3 -0
- WSI/cologne_sample_slide_2.ome.tif +3 -0
- WSI/szeged_sample_slide.ome.tif +3 -0
.gitattributes
CHANGED
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@@ -53,3 +53,7 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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*.jpg filter=lfs diff=lfs merge=lfs -text
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*.jpeg filter=lfs diff=lfs merge=lfs -text
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*.webp filter=lfs diff=lfs merge=lfs -text
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*.jpg filter=lfs diff=lfs merge=lfs -text
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*.jpeg filter=lfs diff=lfs merge=lfs -text
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*.webp filter=lfs diff=lfs merge=lfs -text
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WSI/bari_sample_slide.ome.tif filter=lfs diff=lfs merge=lfs -text
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WSI/cologne_sample_slide_2.ome.tif filter=lfs diff=lfs merge=lfs -text
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WSI/cologne_sample_slide.ome.tif filter=lfs diff=lfs merge=lfs -text
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WSI/szeged_sample_slide.ome.tif filter=lfs diff=lfs merge=lfs -text
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QuPathProject-NoAnnotations/classifiers/classes.json
ADDED
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{
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"pathClasses": [
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"name": "Unclassified"
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{
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"name": "Glomerulus",
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"color": -16776961
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}
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]
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}
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QuPathProject-NoAnnotations/data/1/data.qpdata
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QuPathProject-NoAnnotations/data/1/server.json
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QuPathProject-NoAnnotations/data/1/summary.json
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{"timestamp":1693836245423,"imageType":"BRIGHTFIELD_H_E","server":{"width":122880,"height":23040,"sizeC":3,"sizeZ":1,"sizeT":1},"hierarchy":{"nObjects":1,"objectTypeCounts":{"Root objects":1},"annotationClassificationCounts":{},"detectionClassificationCounts":{}}}
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QuPathProject-NoAnnotations/data/1/thumbnail.jpg
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Git LFS Details
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QuPathProject-NoAnnotations/data/2/data.qpdata
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Binary file (2.9 kB). View file
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QuPathProject-NoAnnotations/data/2/server.json
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{"providerClassName":"qupath.lib.images.servers.bioformats.BioFormatsServerBuilder","uri":"file:/E:/MESCnn/Dataset/WSI/cologne_sample_slide.ome.tif","args":["--series","0"],"metadata":{"name":"cologne_sample_slide.ome.tif","width":42240,"height":39168,"sizeZ":1,"sizeT":1,"channelType":"DEFAULT","isRGB":true,"pixelType":"UINT8","levels":[{"downsample":1.0,"width":42240,"height":39168},{"downsample":4.0,"width":10560,"height":9792},{"downsample":16.0,"width":2640,"height":2448},{"downsample":64.0,"width":660,"height":612}],"channels":[{"name":"Red","color":-65536},{"name":"Green","color":-16711936},{"name":"Blue","color":-16776961}],"pixelCalibration":{"pixelWidth":{"value":0.23047316140035493,"unit":"µm"},"pixelHeight":{"value":0.2305156635393375,"unit":"µm"},"zSpacing":{"value":1.0,"unit":"z-slice"},"timeUnit":"SECONDS","timepoints":[]},"preferredTileWidth":256,"preferredTileHeight":256}}
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QuPathProject-NoAnnotations/data/2/summary.json
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{"timestamp":1693836245249,"imageType":"BRIGHTFIELD_H_E","server":{"width":42240,"height":39168,"sizeC":3,"sizeZ":1,"sizeT":1},"hierarchy":{"nObjects":1,"objectTypeCounts":{"Root objects":1},"annotationClassificationCounts":{},"detectionClassificationCounts":{}}}
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QuPathProject-NoAnnotations/data/2/thumbnail.jpg
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Git LFS Details
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QuPathProject-NoAnnotations/data/6/data.qpdata
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QuPathProject-NoAnnotations/data/6/server.json
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{"providerClassName":"qupath.lib.images.servers.bioformats.BioFormatsServerBuilder","uri":"file:/E:/MESCnn/Dataset/WSI/cologne_sample_slide_2.ome.tif","args":["--series","0"],"metadata":{"name":"cologne_sample_slide_2.ome.tif","width":38400,"height":46080,"sizeZ":1,"sizeT":1,"channelType":"DEFAULT","isRGB":true,"pixelType":"UINT8","levels":[{"downsample":1.0,"width":38400,"height":46080},{"downsample":4.0,"width":9600,"height":11520},{"downsample":16.0,"width":2400,"height":2880},{"downsample":64.0,"width":600,"height":720}],"channels":[{"name":"Red","color":-65536},{"name":"Green","color":-16711936},{"name":"Blue","color":-16776961}],"pixelCalibration":{"pixelWidth":{"value":0.23047316140035493,"unit":"µm"},"pixelHeight":{"value":0.2305156635393375,"unit":"µm"},"zSpacing":{"value":1.0,"unit":"z-slice"},"timeUnit":"SECONDS","timepoints":[]},"preferredTileWidth":256,"preferredTileHeight":256}}
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QuPathProject-NoAnnotations/data/6/summary.json
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{"timestamp":1693840269110,"imageType":"BRIGHTFIELD_H_E","server":{"width":38400,"height":46080,"sizeC":3,"sizeZ":1,"sizeT":1},"hierarchy":{"nObjects":1,"objectTypeCounts":{"Root objects":1},"annotationClassificationCounts":{},"detectionClassificationCounts":{}}}
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QuPathProject-NoAnnotations/data/6/thumbnail.jpg
ADDED
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Git LFS Details
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QuPathProject-NoAnnotations/data/7/data.qpdata
ADDED
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Binary file (2.91 kB). View file
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QuPathProject-NoAnnotations/data/7/server.json
ADDED
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{"providerClassName":"qupath.lib.images.servers.bioformats.BioFormatsServerBuilder","uri":"file:/E:/MESCnn/Dataset/WSI/szeged_sample_slide.ome.tif","args":["--series","0"],"metadata":{"name":"szeged_sample_slide.ome.tif","width":39159,"height":32695,"sizeZ":1,"sizeT":1,"channelType":"DEFAULT","isRGB":true,"pixelType":"UINT8","levels":[{"downsample":1.0,"width":39159,"height":32695},{"downsample":4.0,"width":9789,"height":8173},{"downsample":16.0,"width":2447,"height":2043},{"downsample":64.0,"width":611,"height":510}],"channels":[{"name":"Red","color":-65536},{"name":"Green","color":-16711936},{"name":"Blue","color":-16776961}],"pixelCalibration":{"pixelWidth":{"value":0.121546961325967,"unit":"µm"},"pixelHeight":{"value":0.121546961325967,"unit":"µm"},"zSpacing":{"value":1.0,"unit":"z-slice"},"timeUnit":"SECONDS","timepoints":[]},"preferredTileWidth":256,"preferredTileHeight":256}}
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QuPathProject-NoAnnotations/data/7/summary.json
ADDED
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{"timestamp":1693840262344,"imageType":"BRIGHTFIELD_H_E","server":{"width":39159,"height":32695,"sizeC":3,"sizeZ":1,"sizeT":1},"hierarchy":{"nObjects":1,"objectTypeCounts":{"Root objects":1},"annotationClassificationCounts":{},"detectionClassificationCounts":{}}}
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QuPathProject-NoAnnotations/data/7/thumbnail.jpg
ADDED
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Git LFS Details
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QuPathProject-NoAnnotations/project.qpproj
ADDED
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@@ -0,0 +1,325 @@
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{
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