add tqdm

add_files.py

@@ -4,6 +4,7 @@ from pathlib import Path
 
 import numpy as np
 import pandas as pd
+from tqdm import tqdm
 
 
 def main(args):
@@ -23,7 +24,7 @@ def main(args):
     if args.dry_run:
         print(f"Files will be copied inside {root}/<species>/<tissue>")
     else:
-        for name in existing_files:
+        for name in tqdm(existing_files, desc="Copying files"):
             species, tissue = df_all.loc[name, ["species", "tissue"]].values
 
             src = path / f"{name}.h5ad"
@@ -32,7 +33,6 @@ def main(args):
 
             dst_dir.mkdir(parents=True, exist_ok=True)
 
-            print(f"Copying {src} to {dst}")
             shutil.copyfile(src, dst)
 
     if not args.dry_run: