# Dockerfile for "conda-pack-style" sample images. # Image only contains the activated conda env + system toolchain. # Sample code + pipeline are mounted at runtime via -v. # # Build args: # PACK_FILE e.g. 001_rm_bench_test.tar.gz (file in build context) # ENV_DIR_NAME e.g. py-001 (folder under /opt/conda/envs) # # Build (on remote, from /home/dockerfiles/): # docker buildx build \ # --build-arg PACK_FILE=001_rm_bench_test.tar.gz \ # --build-arg ENV_DIR_NAME=py-001 \ # -t mmsci-py-001 -f Dockerfile.conda-env . # # Run: # docker run --rm -it --gpus all \ # -v /home/code:/workspace/code:ro \ # -v /home/code/data:/workspace/data:ro \ # mmsci-py-001 bash -lc 'python -V' FROM nvidia/cuda:11.8.0-cudnn8-runtime-ubuntu22.04 ARG PACK_FILE ARG ENV_DIR_NAME ENV DEBIAN_FRONTEND=noninteractive \ LANG=C.UTF-8 LC_ALL=C.UTF-8 \ TZ=Etc/UTC RUN apt-get update && apt-get install -y --no-install-recommends \ ca-certificates curl wget git build-essential gcc g++ make \ libgl1 libglib2.0-0 libsm6 libxext6 libxrender1 libgomp1 \ libstdc++6 procps less vim-tiny \ && rm -rf /var/lib/apt/lists/* RUN mkdir -p /opt/conda/envs/${ENV_DIR_NAME} COPY ${PACK_FILE} /tmp/env.tar.gz RUN tar -xzf /tmp/env.tar.gz -C /opt/conda/envs/${ENV_DIR_NAME} \ && rm /tmp/env.tar.gz \ && /opt/conda/envs/${ENV_DIR_NAME}/bin/conda-unpack \ && echo "env unpacked: ${ENV_DIR_NAME}" WORKDIR /workspace ENV PATH=/opt/conda/envs/${ENV_DIR_NAME}/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ENV CONDA_PREFIX=/opt/conda/envs/${ENV_DIR_NAME} ENV LD_LIBRARY_PATH=/opt/conda/envs/${ENV_DIR_NAME}/lib CMD ["bash", "-lc", "python -V && which python && echo READY: $CONDA_PREFIX"]