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README.md
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## Spectra generators
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For generating this dataset, we used custom-trained NEIMS and RASSP models. We did this step because RASSP model is not publicly available and we wanted to
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have more control over potential dataleaks in the context of further models stemming from this dataset. For better reproducibility we make the NIST splits
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used for training NEIMS and RASSP models available in our [GitHub repository]
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## Dataset creation
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From the nature of the NEIMS spectra predictor, all NEIMS-generated peak intensities are in 2 decimals precision. RASSP generated intensities are not restricted in this way,
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so to save storage we rounded them up to 6 decimal places which is beyond recognition for our model in the downstream task.
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Our [preprint]
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[NEIMS]: https://github.com/brain-research/deep-molecular-massspec
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[RASSP]: https://github.com/thejonaslab/rassp-public
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[ZINC 20]: https://zinc20.docking.org/
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[GitHub repository]:
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## Spectra generators
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For generating this dataset, we used custom-trained NEIMS and RASSP models. We did this step because RASSP model is not publicly available and we wanted to
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have more control over potential dataleaks in the context of further models stemming from this dataset. For better reproducibility we make the NIST splits
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used for training NEIMS and RASSP models available in our [GitHub repository]
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## Dataset creation
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From the nature of the NEIMS spectra predictor, all NEIMS-generated peak intensities are in 2 decimals precision. RASSP generated intensities are not restricted in this way,
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so to save storage we rounded them up to 6 decimal places which is beyond recognition for our model in the downstream task.
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Our [preprint] provides more information about the task background, the final finetuned model, and the experiments.
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How to cite:
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```text
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@misc{hájek2025spectusspectraltranslatorunknown,
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title={SpecTUS: Spectral Translator for Unknown Structures annotation from EI-MS spectra},
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author={Adam Hájek and Helge Hecht and Elliott J. Price and Aleš Křenek},
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year={2025},
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eprint={2502.05114},
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archivePrefix={arXiv},
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primaryClass={cs.LG},
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url={https://arxiv.org/abs/2502.05114},
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}
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```
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[NEIMS]: https://github.com/brain-research/deep-molecular-massspec
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[RASSP]: https://github.com/thejonaslab/rassp-public
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[ZINC 20]: https://zinc20.docking.org/
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[GitHub repository]: https://github.com/hejjack/SpecTUS/
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[preprint]: https://arxiv.org/abs/2502.05114
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