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  1. synbench/copula.py +686 -0
  2. synbench/generator.py +148 -0
  3. synbench/gmm.py +421 -0
  4. synbench/scm.py +702 -0
synbench/copula.py ADDED
@@ -0,0 +1,686 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import random
2
+ import math
3
+
4
+ import numpy as np
5
+ import torch
6
+ from torch.distributions import Normal, Beta, Exponential, StudentT
7
+ from scipy.stats import beta as scipy_beta
8
+
9
+
10
+
11
+ # ───────────────────────── helper: icdf() calculation on torch ──────────────────────────
12
+ def _neg_log1p(u):
13
+ """
14
+ Compute -log(1 - u) in a numerically stable way for u close to 0.
15
+
16
+ Args:
17
+ u: Tensor with values in [0, 1).
18
+
19
+ Returns:
20
+ Tensor of -log(1 - u), clamped to be non-negative.
21
+ """
22
+ return (-torch.log1p(-u)).clamp_min(0.0)
23
+
24
+
25
+ def exp_icdf(u, rate):
26
+ """
27
+ Inverse CDF (quantile function) of the Exponential distribution.
28
+
29
+ Args:
30
+ u : Tensor of shape (...,) with values in (0, 1).
31
+ rate : Scale parameter λ > 0, broadcastable with u.
32
+
33
+ Returns:
34
+ Tensor of the same shape as u containing the quantiles.
35
+ """
36
+ return _neg_log1p(u) / rate
37
+
38
+
39
+ def beta_icdf(p, a, b, n_grid: int = 1000):
40
+ """
41
+ Approximate inverse CDF (quantile function) of the Beta distribution via
42
+ numerical CDF inversion on a uniform grid followed by linear interpolation.
43
+
44
+ Args:
45
+ p : Tensor of probabilities in (0, 1), shape (N,) or (N, D).
46
+ a : Alpha (concentration1) parameter(s), broadcastable to (1, D).
47
+ b : Beta (concentration0) parameter(s), broadcastable to (1, D).
48
+ n_grid : Number of grid points used to approximate the CDF (default 1000).
49
+
50
+ Returns:
51
+ Tensor of quantiles with shape (N, D), clamped to [0, 1].
52
+ """
53
+ p = torch.as_tensor(p, dtype=torch.float32)
54
+ a = torch.as_tensor(a, dtype=torch.float32)
55
+ b = torch.as_tensor(b, dtype=torch.float32)
56
+ if a.size() == torch.Size([]):
57
+ a = a.expand(1)
58
+ if b.size() == torch.Size([]):
59
+ b = b.expand(1)
60
+ x = torch.linspace(0.0, 1.0, n_grid + 1, dtype=torch.float32, device=p.device)
61
+ mid = (x[:-1] + x[1:]) / 2.0
62
+ mid = mid.view(-1, 1) # shape [n_grid, 1]
63
+ dx = 1.0 / n_grid
64
+
65
+ log_norm = torch.lgamma(a) + torch.lgamma(b) - torch.lgamma(a + b)
66
+ pdf_mid = torch.exp((a - 1) * torch.log(mid) +
67
+ (b - 1) * torch.log1p(-mid) -
68
+ log_norm) # [n_grid, D]
69
+ cdf = torch.cumsum(pdf_mid, dim=0) * dx # [n_grid, D]
70
+ cdf = torch.cat([torch.zeros(1, cdf.shape[1], device=p.device), cdf], dim=0) # [n_grid+1, D]
71
+ # Expand p to match shape [N, D]
72
+ if p.ndim == 1:
73
+ p = p.unsqueeze(1)
74
+ if a.ndim == 1:
75
+ a = a.unsqueeze(0)
76
+ b = b.unsqueeze(0)
77
+ if p.shape[1] != a.shape[1]:
78
+ p = p.expand(-1, a.shape[1])
79
+ # Searchsorted per-dimension
80
+ N, D = p.shape
81
+ idx = torch.empty((N, D), dtype=torch.long, device=p.device)
82
+ for d in range(D):
83
+ idx[:, d] = torch.searchsorted(cdf[:, d], p[:, d], right=False).clamp(1, n_grid)
84
+ # Gather x and y for interpolation
85
+ x0 = x[idx - 1]
86
+ x1 = x[idx]
87
+ y0 = torch.empty_like(p)
88
+ y1 = torch.empty_like(p)
89
+ for d in range(D):
90
+ y0[:, d] = cdf[idx[:, d] - 1, d]
91
+ y1[:, d] = cdf[idx[:, d], d]
92
+
93
+ t = (p - y0) / (y1 - y0 + 1e-12)
94
+ return torch.clamp(x0 + t * (x1 - x0), 0., 1.)
95
+
96
+
97
+ def student_t_icdf(u, df):
98
+ """
99
+ Approximate inverse CDF (quantile function) of the Student-t distribution.
100
+
101
+ Uses the relationship between the Student-t and Beta distributions:
102
+ p-value of |t| under t(df) equals the regularised incomplete beta function
103
+ evaluated at df/(df + t^2).
104
+
105
+ Args:
106
+ u : Tensor of probabilities in (0, 1).
107
+ df : Degrees-of-freedom parameter, broadcastable with u.
108
+
109
+ Returns:
110
+ Tensor of quantiles with the same shape as u.
111
+ """
112
+ u = torch.as_tensor(u, dtype=torch.float32)
113
+ df = torch.as_tensor(df, dtype=torch.float32)
114
+
115
+ p = 2.0 * torch.minimum(u, 1 - u)
116
+ p = p.to(df.device)
117
+ x = beta_icdf(p, 0.5 * df, torch.tensor(0.5,device = p.device))
118
+ t = torch.sqrt(df * (1.0 / x - 1.0))
119
+ return torch.where(u > 0.5, t, -t)
120
+
121
+
122
+ def normal_cdf(x):
123
+ """
124
+ CDF of the standard normal distribution evaluated element-wise.
125
+
126
+ Args:
127
+ x: Tensor of real-valued inputs.
128
+
129
+ Returns:
130
+ Tensor of probabilities in (0, 1) with the same shape as x.
131
+ """
132
+ return 0.5*(1+torch.special.erf(x/math.sqrt(2)))
133
+
134
+
135
+ def normal_ppf(u):
136
+ """
137
+ Percent-point function (inverse CDF) of the standard normal distribution.
138
+
139
+ Args:
140
+ u: Tensor of probabilities in (0, 1).
141
+
142
+ Returns:
143
+ Tensor of quantiles with the same shape as u.
144
+ """
145
+ return Normal(0,1).icdf(u)
146
+
147
+
148
+ # ─────────────── low-level helpers ───────────────
149
+ def rand_corr_batch(batch, d, identity=False, device='cuda'):
150
+ """
151
+ Generate a batch of random (or identity) correlation matrices.
152
+
153
+ A valid positive-definite correlation matrix is produced by forming
154
+ A @ A^T and normalising so that every diagonal entry equals 1.
155
+
156
+ Args:
157
+ batch : Number of correlation matrices to generate.
158
+ d : Dimension of each matrix.
159
+ identity : If True, return identity matrices instead of random ones.
160
+ device : Torch device string (default 'cuda').
161
+
162
+ Returns:
163
+ Tensor of shape (B, d, d) containing correlation matrices on the
164
+ specified device with dtype torch.float32.
165
+ """
166
+ if identity:
167
+ eye = torch.eye(d, device=device, dtype=torch.float32)
168
+ return eye.expand(batch, -1, -1).clone()
169
+
170
+ A = torch.rand(batch, d, d, device=device, dtype=torch.float32)
171
+ psd = A @ A.transpose(-1, -2)
172
+ diag= torch.diagonal(psd, dim1=-2, dim2=-1)
173
+ norm= torch.sqrt(torch.clamp(diag, 1e-12))
174
+ C = psd / (norm.unsqueeze(-1)*norm.unsqueeze(-2))
175
+ C.diagonal(dim1=-2, dim2=-1).fill_(1.)
176
+ C += torch.eye(d, device=device, dtype=torch.float32).unsqueeze(0)*1e-6
177
+ return C
178
+
179
+
180
+ def mvn_sample(chol, device):
181
+ """
182
+ Draw one sample per batch from a zero-mean multivariate normal distribution
183
+ parameterised by its Cholesky factor.
184
+
185
+ Args:
186
+ chol : Lower-triangular Cholesky factor of shape (B, d, d) or (d, d).
187
+ A 2-D input is broadcast to batch size 1.
188
+ device : Torch device on which to allocate the standard normal noise.
189
+
190
+ Returns:
191
+ Tensor of shape (B, d) containing the multivariate normal samples.
192
+ """
193
+ # chol: (B,d,d) or (d,d)
194
+ if chol.dim() == 2: chol = chol.unsqueeze(0)
195
+ B,d = chol.shape[:2]
196
+ z = torch.randn(B, d, 1, device=device, dtype=torch.float32)
197
+ return (chol @ z).squeeze(-1) # (B,d)
198
+
199
+
200
+ # ─────────────── mixture helpers ───────────────
201
+ class GaussianMix:
202
+ """
203
+ A univariate Gaussian mixture model that supports CDF and quantile queries.
204
+
205
+ Components are specified as (weight, mean, std) tuples; weights are
206
+ automatically normalised to sum to 1.
207
+ """
208
+
209
+ def __init__(self, comps, device='cpu'):
210
+ """
211
+ Initialise the Gaussian mixture.
212
+
213
+ Args:
214
+ comps : Iterable of (weight, mean, std) tuples defining each component.
215
+ device : Torch device on which to store parameter tensors (default 'cpu').
216
+ """
217
+ w, mu, sigma = zip(*comps)
218
+ self.device = device
219
+ self.w = torch.tensor(w, device=device, dtype=torch.float32)
220
+ self.mu = torch.tensor(mu, device=device, dtype=torch.float32)
221
+ self.sigma = torch.tensor(sigma, device=device, dtype=torch.float32)
222
+ self.w /= self.w.sum()
223
+
224
+ def cdf(self, x):
225
+ """
226
+ Evaluate the mixture CDF at x.
227
+
228
+ Args:
229
+ x: Scalar or tensor of query points.
230
+
231
+ Returns:
232
+ Tensor of CDF values in [0, 1] with the same shape as x.
233
+ """
234
+ x = torch.as_tensor(x, dtype=torch.float32, device=self.device)
235
+ z = (x.unsqueeze(-1) - self.mu) / (self.sigma * math.sqrt(2))
236
+ return (self.w * (0.5 * (1 + torch.erf(z)))).sum(-1)
237
+
238
+ def ppf_bounds(self):
239
+ """
240
+ Return conservative lower and upper bounds for the support of the mixture.
241
+
242
+ Returns:
243
+ Tuple (lo, hi) of floats representing the ±5-sigma range across all
244
+ mixture components.
245
+ """
246
+ lo = (self.mu - 5 * self.sigma).min().item()
247
+ hi = (self.mu + 5 * self.sigma).max().item()
248
+ return lo, hi
249
+
250
+ def ppf(self, u, tol=1e-5, max_iter=100):
251
+ """
252
+ Quantile function of the mixture via bisection search.
253
+
254
+ Args:
255
+ u : Tensor of probabilities in (0, 1), shape (...).
256
+ tol : Convergence tolerance on the bracket width (default 1e-5).
257
+ max_iter : Maximum number of bisection iterations (default 100).
258
+
259
+ Returns:
260
+ Tensor of quantiles with the same shape as u.
261
+ """
262
+ u = torch.as_tensor(u, device=self.device, dtype=torch.float32)
263
+ low, high = self.ppf_bounds()
264
+ low = torch.full_like(u, low)
265
+ high = torch.full_like(u, high)
266
+
267
+ for _ in range(max_iter):
268
+ mid = 0.5 * (low + high)
269
+ cdf_mid = self.cdf(mid)
270
+ low = torch.where(cdf_mid < u, mid, low)
271
+ high = torch.where(cdf_mid >= u, mid, high)
272
+ if torch.max(high - low) < tol:
273
+ break
274
+ return 0.5 * (low + high)
275
+
276
+
277
+ class BetaMix:
278
+ """
279
+ A univariate Beta mixture model with per-component location-scale transforms.
280
+
281
+ Each component is specified as (weight, alpha, beta, loc, scale) so that the
282
+ effective random variable is loc + scale * Beta(alpha, beta).
283
+ """
284
+
285
+ def __init__(self, comps, device='cuda'):
286
+ """
287
+ Initialise the Beta mixture.
288
+
289
+ Args:
290
+ comps : Iterable of (weight, alpha, beta, loc, scale) tuples.
291
+ device : Torch device on which to store parameter tensors (default 'cuda').
292
+ """
293
+ self.comps = comps
294
+ self.w = torch.tensor([c[0] for c in comps], device=device, dtype=torch.float32)
295
+ self.a = torch.tensor([c[1] for c in comps], device=device, dtype=torch.float32)
296
+ self.b = torch.tensor([c[2] for c in comps], device=device, dtype=torch.float32)
297
+ self.loc = torch.tensor([c[3] for c in comps], device=device, dtype=torch.float32)
298
+ self.sc = torch.tensor([c[4] for c in comps], device=device, dtype=torch.float32)
299
+ self.w /= self.w.sum()
300
+ self.device = device
301
+
302
+ def cdf(self, x: torch.Tensor):
303
+ """
304
+ Evaluate the mixture CDF at x using SciPy's Beta CDF (CPU fallback).
305
+
306
+ Args:
307
+ x: Tensor of query points.
308
+
309
+ Returns:
310
+ Tensor of CDF values in [0, 1] with the same shape as x,
311
+ returned on the device specified at construction time.
312
+ """
313
+ # Fallback to CPU-based computation
314
+ x_cpu = x.detach().cpu().numpy()
315
+ cdf_vals = np.zeros_like(x_cpu)
316
+ for w, a, b, loc, scale in zip(self.w, self.a, self.b, self.loc, self.sc):
317
+ dist = scipy_beta(a=a.item(), b=b.item(), loc=loc.item(), scale=scale.item())
318
+ cdf_vals += w.item() * dist.cdf(x_cpu)
319
+ return torch.tensor(cdf_vals, device=self.device, dtype=torch.float32)
320
+
321
+ def ppf_bounds(self):
322
+ """
323
+ Return conservative lower and upper bounds for the support of the mixture.
324
+
325
+ Returns:
326
+ Tuple (lo, hi) of floats corresponding to the minimum loc and the
327
+ maximum loc + scale across all components.
328
+ """
329
+ lo = (self.loc).min().item()
330
+ hi = (self.loc + self.sc).max().item()
331
+ return lo, hi
332
+
333
+ # ─────────────── marginal catalogue ───────────────
334
+ def rand_def(device='cuda', PPF_GRID=1_000):
335
+ """
336
+ Randomly sample a marginal distribution specification.
337
+
338
+ Picks uniformly from: Normal, Beta, Exponential, StudentT, Gaussian mixture,
339
+ and Beta mixture. For parametric torch distributions the spec contains the
340
+ distribution object directly; for mixture models an interpolation grid is
341
+ precomputed and stored instead.
342
+
343
+ Args:
344
+ device : Torch device on which to allocate tensors (default 'cuda').
345
+ PPF_GRID : Number of grid points for the quantile interpolation table
346
+ used by mixture distributions (default 1000).
347
+
348
+ Returns:
349
+ dict with key 'kind':
350
+ - 'torch' → also has key 'dist' (a torch.distributions instance).
351
+ - 'interp' → also has keys 'u', 'x', 'lo', 'hi' for grid interpolation.
352
+ """
353
+
354
+ cat = random.choice(["normal","beta","beta_mix","expo","gauss_mix","beta_mix","student"])
355
+ if cat=="normal":
356
+ return dict(kind="torch", dist=Normal(torch.tensor(random.uniform(-1,1)),
357
+ torch.tensor(random.uniform(1.5,2))))
358
+ if cat=="beta":
359
+ return dict(kind="torch", dist=Beta(torch.tensor(random.uniform(1,5)),
360
+ torch.tensor(random.uniform(1,5))))
361
+ if cat=="expo":
362
+ return dict(kind="torch", dist=Exponential(torch.tensor(random.uniform(1,2))))
363
+ if cat=="student":
364
+ return dict(kind="torch", dist=StudentT(torch.tensor(random.randint(3,10))))
365
+ if cat=="gauss_mix":
366
+ comps = [(random.uniform(0.3,0.7),
367
+ random.uniform(-3,3),
368
+ random.uniform(0.5,1.5)) for _ in range(random.randint(1,3))]
369
+ mix = GaussianMix(comps)
370
+ else:
371
+ comps = [(random.uniform(0.3,0.7),
372
+ random.uniform(1,5),
373
+ random.uniform(1,5),
374
+ -5.0, 10.0) for _ in range(random.randint(1,3))]
375
+ mix = BetaMix(comps,device=device)
376
+ # build interpolation grids
377
+ u_grid = torch.linspace(0.001,0.999,PPF_GRID, device=device, dtype=torch.float32)
378
+ lo,hi = mix.ppf_bounds()
379
+ x_grid = torch.linspace(lo,hi,PPF_GRID, device=device, dtype=torch.float32)
380
+ #cdf_vals = mix.cdf(x_grid)
381
+ return dict(kind="interp", u=u_grid, x=x_grid, lo=lo, hi=hi)
382
+
383
+
384
+ class CopulaGenerator:
385
+ """
386
+ Generates labelled anomaly-detection datasets via a Gaussian copula.
387
+
388
+ The joint distribution is built by:
389
+ 1. Sampling from a multivariate normal with a random correlation structure.
390
+ 2. Mapping each marginal through its CDF to obtain uniform scores.
391
+ 3. Applying per-dimension quantile functions drawn from ``rand_def`` to
392
+ produce the final heterogeneous features.
393
+
394
+ Inliers follow the base copula; outliers are injected by either perturbing
395
+ the uniform scores toward the tails or by replacing a random sub-block of the
396
+ Cholesky factor with an independent structure.
397
+ """
398
+
399
+ def __init__(self, num_dims, device="cuda", ppf_grid=2_000):
400
+ """
401
+ Initialise the copula generator.
402
+
403
+ Args:
404
+ num_dims : Number of feature dimensions (d).
405
+ device : Torch device (default 'cuda').
406
+ ppf_grid : Grid resolution for quantile interpolation tables
407
+ used by mixture marginals (default 2000).
408
+ """
409
+ self.num_dims = num_dims
410
+ self.device = device
411
+ self.dtype = torch.float32
412
+ self.ppf_grid = ppf_grid
413
+ self.chol_base = torch.linalg.cholesky(
414
+ rand_corr_batch(1, num_dims, device=device)[0]
415
+ )
416
+ self.specs = [rand_def(device=device, PPF_GRID=ppf_grid) for _ in range(num_dims)]
417
+
418
+
419
+ def sample_inliers(self, num_inliers):
420
+ """
421
+ Sample inlier observations from the base copula.
422
+
423
+ Draws from the zero-mean multivariate normal defined by the stored
424
+ Cholesky factor. The raw Gaussian samples are returned without
425
+ marginal transformation so that ``_transform`` can be applied later.
426
+
427
+ Args:
428
+ num_inliers : Number of inlier samples to generate.
429
+
430
+ Returns:
431
+ Tensor of shape (num_inliers, num_dims) containing the raw
432
+ Gaussian-copula samples.
433
+ """
434
+ z = torch.randn(num_inliers, self.num_dims, device=self.device, dtype=self.dtype)
435
+ samples = (z @ self.chol_base.T)
436
+ return samples
437
+
438
+ def sample_outliers(self,
439
+ num_outliers,
440
+ method="probabilistic",
441
+ strength=0.2):
442
+ """
443
+ Generate outlier observations in Gaussian-copula space.
444
+
445
+ Two injection strategies are supported:
446
+
447
+ ``'probabilistic'``
448
+ Samples from the base copula, converts to uniform marginals, then
449
+ forces a random subset of dimensions toward 0 or 1 to create
450
+ extreme-value anomalies.
451
+
452
+ ``'dependence'``
453
+ Replaces a contiguous block of the Cholesky factor with a randomly
454
+ rotated version, breaking the local correlation structure.
455
+
456
+ Args:
457
+ num_outliers : Number of outlier samples to generate.
458
+ method : Injection strategy – ``'probabilistic'`` or
459
+ ``'dependence'`` (default ``'probabilistic'``).
460
+ strength : Controls how extreme the perturbation is. For
461
+ ``'probabilistic'`` this is the tail-fraction pushed;
462
+ for ``'dependence'`` it is the mixing weight of
463
+ the random sub-block (default 0.2).
464
+
465
+ Returns:
466
+ Tensor of shape (num_outliers, num_dims) in Gaussian-copula space
467
+ (before marginal transformation).
468
+
469
+ Raises:
470
+ ValueError: If ``method`` is not one of the supported strategies.
471
+ """
472
+ if method == "probabilistic":
473
+ # 1. Sample from base MVN
474
+ z = torch.randn(num_outliers, self.num_dims, device=self.device, dtype=self.dtype)
475
+ samples = (z @ self.chol_base.T)
476
+
477
+ # 2. Transform to uniform
478
+ U = normal_cdf(samples)
479
+ min_k = max(1, math.ceil(0.02 * self.num_dims))
480
+ max_k = max(min_k, math.floor(0.2 * self.num_dims))
481
+
482
+ # Ensure min_k < max_k + 1 to avoid invalid range
483
+ if min_k >= max_k + 1:
484
+ max_k = min_k # fallback: both min_k and max_k equal, will result in k_row = min_k
485
+
486
+ k_row = torch.randint(min_k, max_k + 1, (num_outliers,), device=self.device)
487
+ #k_row = torch.randint(5, 6, (num_outliers,), device=self.device)
488
+ perm = torch.rand(num_outliers, self.num_dims, device=self.device).argsort(dim=1)
489
+ sel_mask = torch.arange(self.num_dims, device=self.device).expand(num_outliers, -1) < k_row.unsqueeze(1)
490
+ mask = torch.zeros_like(U, dtype=torch.bool).scatter(1, perm, sel_mask)
491
+
492
+ push0 = torch.rand_like(U) < 0.5
493
+ z_mask, o_mask = mask & push0, mask & ~push0
494
+ noise = torch.empty_like(U)
495
+ noise[z_mask] = strength * torch.rand(z_mask.sum(), device=self.device) * 0.5
496
+ noise[o_mask] = 1.0 - strength * torch.rand(o_mask.sum(), device=self.device) * 0.5
497
+ U[mask] = noise[mask]
498
+
499
+ samples = Normal(0, 1).icdf(U)
500
+ return samples
501
+
502
+ elif method == "dependence":
503
+ d, device = self.num_dims, self.device
504
+ base_L = self.chol_base
505
+ # 1) Random block lengths k and start indices i0 –– now 1 … d inclusive
506
+ lowerbound = int(1+ d//3)
507
+ upperbound = min(int(1+ 2 * d//3),d+1)
508
+ if lowerbound == upperbound:
509
+ upperbound += 1
510
+ k = torch.randint(lowerbound, upperbound, (num_outliers,), device=device) # (B,) #int(1+ d//2)
511
+ k_max = int(k.max())
512
+
513
+ # Vectorised start positions: i0[b] ∈ {0 … d-k[b]}
514
+ # torch.randint can’t take a per-element “high”, so we synthesise i0 using rand():
515
+ max_start = d - k # (B,)
516
+ i0 = (torch.rand(num_outliers, device=device) * (max_start + 1)
517
+ ).floor().long() # (B,)
518
+
519
+ i1 = i0 + k # (B,) exclusive end index
520
+ L_rand_full = torch.linalg.cholesky(
521
+ rand_corr_batch(num_outliers, k_max, identity=True, device=device) # (B,k_max,k_max)
522
+ )
523
+ rows = torch.arange(k_max, device=device).view(1, k_max, 1) # (1,k_max,1)
524
+ cols = torch.arange(k_max, device=device).view(1, 1, k_max) # (1,1,k_max)
525
+ keep = (rows < k.view(-1, 1, 1)) & (cols < k.view(-1, 1, 1)) # (B,k_max,k_max)
526
+
527
+ L_rand_pad = torch.zeros(num_outliers, d, d, device=device) # (B,d,d)
528
+ L_rand_pad[:, :k_max, :k_max][keep] = L_rand_full[keep]
529
+ L_mix = base_L.expand(num_outliers, -1, -1).clone()
530
+
531
+ row = torch.arange(d, device=device).view(1, d) # (1,d)
532
+ mask_rows = (row >= i0.view(-1, 1)) & (row < i1.view(-1, 1)) # (B,d)
533
+ col = torch.arange(d, device=device).view(1, 1, d) # (1,1,d)
534
+ mask = mask_rows.unsqueeze(-1) & (col < row.unsqueeze(-1) + 1)
535
+
536
+ L_mix = torch.where(mask,
537
+ (1- strength) * L_mix + strength *L_rand_pad,
538
+ L_mix)
539
+ L_mix.diagonal(dim1=-2, dim2=-1).clamp_(min=1e-6)
540
+ return mvn_sample(L_mix, device=device)
541
+ else:
542
+ raise ValueError(f"Unsupported outlier injection method: {method}")
543
+
544
+ def _transform(self, samples):
545
+ """
546
+ Map Gaussian-copula samples to the target marginal distributions.
547
+
548
+ Converts each column of ``samples`` through the standard-normal CDF to
549
+ obtain uniform scores, then applies the per-dimension quantile function
550
+ stored in ``self.specs``.
551
+
552
+ Distribution-specific dispatch:
553
+ - ``Normal``, ``Beta``, ``Exponential``, ``StudentT`` → vectorised GPU
554
+ operations (batched across all columns of the same type).
555
+ - Mixture (``kind='interp'``) → fast linear interpolation on the
556
+ precomputed PPF grid.
557
+
558
+ Args:
559
+ samples : Tensor of shape (N, D) in Gaussian-copula space.
560
+
561
+ Returns:
562
+ Tensor of shape (N, D) with each column drawn from its target
563
+ marginal distribution.
564
+ """
565
+ U = normal_cdf(samples)
566
+ eps = 1e-6
567
+ U = torch.clamp(U, eps, 1-eps) #make sure U does not approch infty
568
+ N, D = U.shape
569
+ X = torch.empty_like(U)
570
+ # Group columns by distribution type
571
+ interp_cols, normal_cols, beta_cols, exp_cols, student_cols = [], [], [], [], []
572
+ for d, spec in enumerate(self.specs):
573
+ if spec["kind"] == "interp":
574
+ interp_cols.append(d)
575
+ elif spec["kind"] == "torch":
576
+ dist = spec["dist"]
577
+ if isinstance(dist, Normal):
578
+ normal_cols.append(d)
579
+ elif isinstance(dist, Beta):
580
+ beta_cols.append(d)
581
+ elif isinstance(dist, Exponential):
582
+ exp_cols.append(d)
583
+ elif isinstance(dist, StudentT):
584
+ student_cols.append(d)
585
+ # ---------- Interp mixture sampling ----------
586
+ for d in interp_cols:
587
+ u = U[:, d]
588
+ spec = self.specs[d]
589
+ grid_min = spec["u"][0]
590
+ grid_max = spec["u"][-1]
591
+ n_bins = len(spec["u"]) - 1
592
+ bin_width = (grid_max - grid_min) / n_bins
593
+ # Clamp u to grid range
594
+ u_clamped = torch.clamp(u, grid_min, grid_max - 1e-6)
595
+ # Fast approximate bin index (assumes linear CDF grid)
596
+ idx = ((u_clamped - grid_min) / bin_width).long().clamp(0, n_bins - 1)
597
+ idx = torch.clamp(idx, 1, len(spec["u"]) - 1)
598
+ u_lo, u_hi = spec["u"][idx - 1], spec["u"][idx]
599
+ x_lo, x_hi = spec["x"][idx - 1], spec["x"][idx]
600
+ X[:, d] = x_lo + (u - u_lo) * (x_hi - x_lo) / (u_hi - u_lo)
601
+ # ---------- Normal ----------
602
+ if normal_cols:
603
+ loc = torch.tensor([self.specs[d]["dist"].loc for d in normal_cols],
604
+ device=self.device).view(1, -1)
605
+ scale = torch.tensor([self.specs[d]["dist"].scale for d in normal_cols],
606
+ device=self.device).view(1, -1)
607
+ dist = Normal(loc, scale)
608
+ X[:, normal_cols] = dist.icdf(U[:, normal_cols])
609
+ # ---------- Beta ----------
610
+ if beta_cols:
611
+ a = torch.tensor([self.specs[d]["dist"].concentration1 for d in beta_cols],
612
+ device=self.device).view(1, -1)
613
+ b = torch.tensor([self.specs[d]["dist"].concentration0 for d in beta_cols],
614
+ device=self.device).view(1, -1)
615
+ X[:, beta_cols] = beta_icdf(U[:, beta_cols], a, b)
616
+ # ---------- Exponential ----------
617
+ if exp_cols:
618
+ rate = torch.tensor([self.specs[d]["dist"].rate for d in exp_cols],
619
+ device=self.device).view(1, -1)
620
+ X[:, exp_cols] = exp_icdf(U[:, exp_cols], rate)
621
+ # ---------- StudentT ----------
622
+ if student_cols:
623
+ df = torch.tensor([self.specs[d]["dist"].df for d in student_cols],
624
+ device=self.device).view(1, -1)
625
+ X[:, student_cols] = student_t_icdf(U[:, student_cols], df)
626
+ return X
627
+
628
+
629
+
630
+ @torch.no_grad()
631
+ def draw_batched_data(self,
632
+ num_inliers,
633
+ num_local_anomalies):
634
+ """
635
+ Generate a labelled dataset of inliers and outliers.
636
+
637
+ Randomly selects an outlier-injection method and strength, draws both
638
+ populations, concatenates them, applies the marginal transformation, and
639
+ then splits the result back into inlier and outlier tensors.
640
+
641
+ Args:
642
+ num_inliers : Number of normal (inlier) observations.
643
+ num_local_anomalies: Number of anomalous (outlier) observations.
644
+
645
+ Returns:
646
+ Tuple ``(X_inliers, X_outliers)`` where each element is a Tensor of
647
+ shape (n, num_dims) already transformed to the target marginals.
648
+ """
649
+ METHOD = random.choice(['dependence']) #["disturb_covariance"])#,"probabilistic"]) # or add "probabilistic"
650
+ STRENGTH = random.uniform(0.2,0.4) if METHOD == 'probabilistic' else random.uniform(0.97,0.99)
651
+ inliers = self.sample_inliers(num_inliers)
652
+
653
+ outliers = self.sample_outliers(num_local_anomalies, method=METHOD, strength=STRENGTH)
654
+ combined = torch.cat([inliers, outliers], dim=0)
655
+
656
+ X_combined = self._transform(combined)
657
+ X_inliers = X_combined[:num_inliers]
658
+ X_outliers = X_combined[num_inliers:]
659
+
660
+ return X_inliers, X_outliers
661
+
662
+
663
+ def make_Copula(device,
664
+ max_feature_dim=100,
665
+ min_feature_dim=2,
666
+ dim=None):
667
+ """
668
+ Convenience factory for ``CopulaGenerator`` with a randomised feature dimension.
669
+
670
+ Args:
671
+ device : Torch device string (e.g. ``'cuda'``, ``'cpu'``).
672
+ max_feature_dim : Upper bound (exclusive) for the random feature count
673
+ when ``dim`` is not provided (default 100).
674
+ min_feature_dim : Lower bound (inclusive) for the random feature count
675
+ when ``dim`` is not provided (default 2).
676
+ dim : If given, use this exact feature dimension instead of
677
+ sampling randomly.
678
+
679
+ Returns:
680
+ A freshly initialised ``CopulaGenerator`` instance.
681
+ """
682
+ if dim is not None:
683
+ num_features = dim
684
+ else:
685
+ num_features = np.random.randint(min_feature_dim, max_feature_dim)
686
+ return CopulaGenerator(num_dims=num_features, device=device)
synbench/generator.py ADDED
@@ -0,0 +1,148 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ from copula import CopulaGenerator
2
+ from gmm import make_NdMclusterGMM
3
+ from scm import make_structuralSCM
4
+
5
+ import math
6
+ import os
7
+ import random
8
+
9
+ import numpy as np
10
+ import torch
11
+ from sklearn.metrics import roc_auc_score
12
+ from sklearn.neighbors import LocalOutlierFactor
13
+ from tqdm import tqdm
14
+
15
+ #========== Helper functions =========================#
16
+ def set_seed(seed: int = 0):
17
+ # Python built-in RNG
18
+ random.seed(seed)
19
+ # NumPy RNG
20
+ np.random.seed(seed)
21
+ # PyTorch CPU RNG
22
+ torch.manual_seed(seed)
23
+ # PyTorch CUDA RNG (all GPUs)
24
+ if torch.cuda.is_available():
25
+ torch.cuda.manual_seed(seed)
26
+ torch.cuda.manual_seed_all(seed)
27
+ torch.backends.cudnn.deterministic = True
28
+ torch.backends.cudnn.benchmark = False
29
+
30
+ def evaluate_with_lof(X, y, num_outliers):
31
+ contamination = num_outliers / len(y)
32
+ lof = LocalOutlierFactor(n_neighbors=20, contamination=contamination)
33
+ _ = lof.fit_predict(X)
34
+ scores = -lof.negative_outlier_factor_
35
+ return roc_auc_score(y, scores)
36
+
37
+
38
+ def run_generation(
39
+ model_builder,
40
+ save_path_builder,
41
+ accept_auc,
42
+ base_seed,
43
+ dimension_range,
44
+ samples_per_dim_range=32,
45
+ device='cuda:0',
46
+ ):
47
+ for j, dimension in tqdm(enumerate(dimension_range)):
48
+ count = 0
49
+ i = 0
50
+ begin_idx = j * samples_per_dim_range
51
+
52
+ while count < samples_per_dim_range:
53
+ set_seed(base_seed + i)
54
+ dim = np.random.randint(low=dimension[0], high=dimension[1])
55
+
56
+ num_inliers = np.random.randint(1_000, 5_000)
57
+ outliers_ratio = np.random.uniform(0.05, 0.15)
58
+ num_outliers = int(outliers_ratio * num_inliers)
59
+
60
+ model = model_builder(dim=dim, device=device)
61
+ X_in, X_out = model.draw_batched_data(num_inliers, num_outliers)
62
+
63
+ X = torch.cat([X_in, X_out]).cpu().numpy()
64
+ y = np.concatenate([np.zeros(num_inliers), np.ones(num_outliers)])
65
+
66
+ auc = evaluate_with_lof(X, y, num_outliers)
67
+ if accept_auc(auc):
68
+ saved = begin_idx + count
69
+ output_path = save_path_builder(saved)
70
+ os.makedirs(os.path.dirname(output_path), exist_ok=True)
71
+ np.savez(output_path, X=X, y=y)
72
+ count += 1
73
+ i += 1
74
+
75
+ print(
76
+ f"For dimension [{dimension[0]}, {dimension[1]}), accepted ratio:",
77
+ (count / i),
78
+ )
79
+
80
+
81
+ def build_gmm_model(dim, device):
82
+ num_cluster = np.random.randint(low=2, high=6)
83
+ max_mean = np.random.randint(low=2, high=6)
84
+ max_var = np.random.randint(low=2, high=6)
85
+ return make_NdMclusterGMM(
86
+ dim=dim,
87
+ num_cluster=num_cluster,
88
+ weights=torch.tensor([1 / num_cluster] * num_cluster, device=device),
89
+ max_mean=max_mean,
90
+ max_var=max_var,
91
+ inflate_full=False,
92
+ sub_dims=None,
93
+ percentile=0.9,
94
+ delta=0.05,
95
+ device=device,
96
+ )
97
+
98
+
99
+ def build_copula_model(dim, device):
100
+ return CopulaGenerator(num_dims=dim, device=device)
101
+
102
+
103
+ def build_scm_model(dim, device):
104
+ max_num_layer = 5
105
+ min_num_layer = max(int(np.sqrt(dim)) - 3, 2)
106
+ min_hidden_size = max(int(math.floor(dim / min_num_layer)) + 2, 2)
107
+ max_hidden_size = min(min_hidden_size + 7, 40)
108
+ return make_structuralSCM(
109
+ max_feature_dim=dim,
110
+ min_num_layer=min_num_layer,
111
+ max_num_layer=max_num_layer,
112
+ min_hidden_size=min_hidden_size,
113
+ max_hidden_size=max_hidden_size,
114
+ alpha=1.5,
115
+ beta=4.0,
116
+ device=device,
117
+ )
118
+
119
+
120
+ if __name__ == '__main__':
121
+ dimension_range = [(2, 21), (21, 41), (41, 61), (61, 81), (81, 101)]
122
+
123
+ print('generate GMM based')
124
+ run_generation(
125
+ model_builder=build_gmm_model,
126
+ save_path_builder=lambda saved: f"gaussian/gaussian_{saved}.npz",
127
+ accept_auc=lambda auc: auc < 0.95,
128
+ base_seed=52324,
129
+ dimension_range=dimension_range,
130
+ )
131
+
132
+ print('generate copula based')
133
+ run_generation(
134
+ model_builder=build_copula_model,
135
+ save_path_builder=lambda saved: f"copula_disturb/copuladisturb_{saved}.npz",
136
+ accept_auc=lambda auc: 0.5 < auc < 0.95,
137
+ base_seed=52324,
138
+ dimension_range=dimension_range,
139
+ )
140
+
141
+ print('generate scm based')
142
+ run_generation(
143
+ model_builder=build_scm_model,
144
+ save_path_builder=lambda saved: f"scm_contextual/scmcontextual_{saved}.npz",
145
+ accept_auc=lambda auc: 0.5 < auc < 0.95,
146
+ base_seed=52324,
147
+ dimension_range=dimension_range,
148
+ )
synbench/gmm.py ADDED
@@ -0,0 +1,421 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import numpy as np
2
+ import torch
3
+ from torch.distributions.multivariate_normal import MultivariateNormal
4
+ from scipy.stats import chi2
5
+ import time
6
+
7
+
8
+ class GaussianMixtureModel:
9
+ def __init__(self,
10
+ means: torch.Tensor,
11
+ covariances: torch.Tensor,
12
+ weights: torch.Tensor,
13
+ percentile=0.80,
14
+ delta=0.05,
15
+ inflate_scale=5.0,
16
+ inflate_full=False,
17
+ sub_dims=None,
18
+ device='cpu'):
19
+ """
20
+ Initialize a Gaussian Mixture Model and a corresponding inflated GMM.
21
+
22
+ The normal GMM is used to draw inlier samples. The inflated GMM is
23
+ created by enlarging the covariance values on a selected subset of
24
+ dimensions, which makes it easier to sample local anomalies.
25
+
26
+ Args:
27
+ means: Tensor of shape ``(num_cluster, d)`` containing one mean
28
+ vector per Gaussian component.
29
+ covariances: Tensor of shape ``(num_cluster, d, d)`` containing one
30
+ covariance matrix per Gaussian component.
31
+ weights: Tensor of shape ``(num_cluster,)`` containing mixture
32
+ probabilities. These are used by ``torch.multinomial`` when
33
+ choosing which component to sample from.
34
+ percentile: Base chi-square percentile used to define inlier and
35
+ anomaly thresholds in the selected subspace.
36
+ delta: Margin around ``percentile``. Inliers are below
37
+ ``percentile - delta``; local anomalies are above
38
+ ``percentile + delta``.
39
+ inflate_scale: Multiplicative factor applied to selected covariance
40
+ entries when constructing the inflated GMM.
41
+ inflate_full: If True, inflate all dimensions. If False, randomly
42
+ choose a non-empty subset of dimensions to inflate.
43
+ sub_dims: Optional user-provided dimensions to inflate and use for
44
+ Mahalanobis-distance filtering.
45
+ device: Device on which tensors are stored.
46
+ """
47
+ self.device = device
48
+ self.means = means
49
+ self.covariances = covariances
50
+ self.weights = weights
51
+
52
+ self.num_cluster = len(means)
53
+ d = self.means[0].shape[0]
54
+ self.d = d
55
+ n = d if inflate_full else np.random.randint(1, d + 1) # Generate random integer between 1 and d, inclusive
56
+ if inflate_full and sub_dims is not None:
57
+ print('we are inflating all the dimensions, however, sub_dims is provided')
58
+ raise Exception
59
+ self.sub_dims = torch.sort(torch.randperm(d)[:n]).values.to(self.device) if sub_dims is None else sub_dims.to(
60
+ self.device)
61
+
62
+ self.threshold_plus_delta = chi2.ppf(percentile + delta, df=len(self.sub_dims))
63
+ self.threshold_minus_delta = chi2.ppf(percentile - delta, df=len(self.sub_dims))
64
+
65
+ self.inflated_covariances = []
66
+ self.inv_sub_covariances = []
67
+
68
+ for cov in self.covariances:
69
+ cov_copy = cov.clone()
70
+ sub_cov = cov_copy[self.sub_dims, :][:, self.sub_dims] # the sub_cov defines a new (smaller) Gaussian
71
+ # n x n ---> sub_dims x n ---> sub_dims x sub_dims
72
+ self.inv_sub_covariances.append(torch.linalg.inv(sub_cov))
73
+ cov_copy[self.sub_dims[:, None], self.sub_dims] *= inflate_scale
74
+ self.inflated_covariances.append(cov_copy)
75
+
76
+ self.inflated_covariances = torch.stack(self.inflated_covariances)
77
+ self.inv_sub_covariances = torch.stack(self.inv_sub_covariances)
78
+
79
+ self.GMM4sample = [MultivariateNormal(self.means[cluster_id], self.covariances[cluster_id])
80
+ for cluster_id in range(len(self.weights))]
81
+
82
+ self.GMM4inf = [MultivariateNormal(self.means[cluster_id], self.inflated_covariances[cluster_id])
83
+ for cluster_id in range(len(self.weights))]
84
+
85
+
86
+ def draw_samples(self, num_samples):
87
+ """
88
+ Draws samples from the d-dimensional Gaussian Mixture Model.
89
+ Args:
90
+ num_samples (int): Number of samples to draw.
91
+ Returns:
92
+ torch.Tensor: samples drawn from the GMM.
93
+ """
94
+ samples = torch.zeros(num_samples, self.d, device=self.device)
95
+ component_choices = torch.multinomial(self.weights, num_samples, replacement=True)
96
+ for cluster_id in range(self.num_cluster):
97
+ mask = (component_choices == cluster_id)
98
+ num_cluster_samples = mask.sum().item()
99
+ if num_cluster_samples > 0:
100
+ sample = self.GMM4sample[cluster_id].sample((num_cluster_samples,))
101
+ samples[mask] = sample
102
+ return samples
103
+
104
+
105
+ def draw_inflated_samples(self, num_samples):
106
+ """
107
+ Draws samples from the d-dimensional inflated Gaussian Mixture Model.
108
+ Args:
109
+ num_samples (int): Number of samples to draw.
110
+ Returns:
111
+ torch.Tensor: samples drawn from the inflated GMM.
112
+ """
113
+ samples = torch.zeros(num_samples, self.d, device=self.device)
114
+ component_choices = torch.multinomial(self.weights, num_samples, replacement=True)
115
+
116
+ for cluster_id in range(self.num_cluster):
117
+ mask = (component_choices == cluster_id)
118
+ num_cluster_samples = mask.sum().item()
119
+ if num_cluster_samples > 0:
120
+ sample = self.GMM4inf[cluster_id].sample((num_cluster_samples,)) # .type_as(self.weights)
121
+ samples[mask] = sample
122
+ return samples
123
+
124
+
125
+ def mahalanobis_distance(self, sample, mean, inv_covariance):
126
+ """
127
+ Computes the Mahalanobis distance of a sample from a given mean and inverse covariance matrix.
128
+ Args:
129
+ sample (torch.Tensor): Sample point. (d, )
130
+ mean (torch.Tensor): Mean vector. (d, )
131
+ inv_covariance (torch.Tensor): Inverse covariance matrix. (sub-dims, )
132
+ Returns:
133
+ float: Mahalanobis distance of the sample from the mean.
134
+ """
135
+ delta = sample[self.sub_dims] - mean[self.sub_dims]
136
+ return torch.sqrt((delta @ inv_covariance @ delta).sum())
137
+
138
+
139
+ def batched_squared_mahalanobis_distance(self, X, mean, inv_cov):
140
+ # Select only the dimensions used for local anomaly detection,
141
+ # then subtract the corresponding mean values.
142
+ # X[:, self.sub_dims]: shape (num_samples, num_selected_dims)
143
+ # mean[self.sub_dims]: shape (num_selected_dims,)
144
+ delta = X[:, self.sub_dims] - mean[self.sub_dims]
145
+
146
+ # Compute squared Mahalanobis distance for each sample:
147
+ # distance_i = delta_i^T @ inv_cov @ delta_i
148
+ # delta @ inv_cov @ delta.T gives a matrix of pairwise quadratic forms
149
+ # between all samples. The diagonal contains each sample's own
150
+ # squared Mahalanobis distance.
151
+ return torch.diag(delta @ inv_cov @ delta.T)
152
+
153
+
154
+ def draw_inliers(self, num_samples):
155
+ """
156
+ Draw inlier samples from the original GMM using rejection sampling.
157
+ A sample is accepted as an inlier if its minimum squared Mahalanobis
158
+ distance to any Gaussian component, computed only on self.sub_dims,
159
+ is below self.threshold_minus_delta.
160
+ Args:
161
+ num_samples: Number of inlier samples to return.
162
+ Returns:
163
+ Tensor of shape (num_samples, self.d) containing accepted inlier samples.
164
+ """
165
+
166
+ # Draw more candidates than needed, because some samples will be rejected.
167
+ # Use at least 1000 candidates per loop to avoid very small inefficient batches.
168
+ batch_size = max(num_samples * 2, 1000)
169
+ samples = []
170
+ total_samples_needed = num_samples
171
+ while total_samples_needed > 0:
172
+ raw_samples = self.draw_samples(batch_size)
173
+ batch_distances = self.get_squared_batched_dist(raw_samples)
174
+ min_squared_distances = torch.min(batch_distances, dim=1).values
175
+ inliner_mask = min_squared_distances < self.threshold_minus_delta
176
+ selected_samples = raw_samples[inliner_mask]
177
+ num_selected = selected_samples.shape[0]
178
+ if num_selected > 0:
179
+ if num_selected >= total_samples_needed:
180
+ samples.append(selected_samples[:total_samples_needed])
181
+ total_samples_needed = 0
182
+ else:
183
+ samples.append(selected_samples)
184
+ total_samples_needed -= num_selected
185
+ samples = torch.cat(samples)
186
+ return samples
187
+
188
+
189
+ def draw_local_anomalies(self, num_samples):
190
+ """
191
+ Draw local anomaly samples from the inflated GMM using rejection sampling.
192
+
193
+ A sample is accepted as a local anomaly if its minimum squared Mahalanobis
194
+ distance to any original Gaussian component, computed only on self.sub_dims,
195
+ is above self.threshold_plus_delta.
196
+
197
+ Args:
198
+ num_samples: Number of local anomaly samples to return.
199
+
200
+ Returns:
201
+ Tensor of shape (num_samples, self.d) containing accepted local anomaly samples.
202
+ """
203
+ batch_size = max(num_samples * 2, 1000)
204
+ samples = []
205
+ total_samples_needed = num_samples
206
+ while total_samples_needed > 0:
207
+ raw_samples = self.draw_inflated_samples(batch_size)
208
+ batch_distances = self.get_squared_batched_dist(raw_samples)
209
+ min_squared_distances = torch.min(batch_distances, dim=1).values
210
+ anomaly_mask = min_squared_distances > self.threshold_plus_delta
211
+ selected_samples = raw_samples[anomaly_mask]
212
+ num_selected = selected_samples.shape[0]
213
+ if num_selected > 0:
214
+ if num_selected >= total_samples_needed:
215
+ samples.append(selected_samples[:total_samples_needed])
216
+ total_samples_needed = 0
217
+ else:
218
+ samples.append(selected_samples)
219
+ total_samples_needed -= num_selected
220
+ samples = torch.cat(samples)
221
+ return samples
222
+
223
+
224
+ def assert_inliers(self, samples):
225
+ """
226
+ Verify that all given samples satisfy the inlier criterion.
227
+ A sample is considered an inlier if its minimum squared Mahalanobis
228
+ distance to any Gaussian component, computed on self.sub_dims, is below
229
+ self.threshold_minus_delta.
230
+ Args:
231
+ samples: Tensor of shape (num_samples, self.d) containing samples
232
+ to check.
233
+ Raises:
234
+ AssertionError: If any sample does not satisfy the inlier condition.
235
+ """
236
+ for sample in samples:
237
+ distances = [self.mahalanobis_distance(sample, mean, inv_cov) for mean, inv_cov in
238
+ zip(self.means, self.inv_sub_covariances)]
239
+ assert min(distances) ** 2 < self.threshold_minus_delta
240
+
241
+
242
+ def assert_local_anomalies(self, samples):
243
+ """
244
+ Verify that all given samples satisfy the local anomaly criterion.
245
+ A sample is considered a local anomaly if its minimum squared Mahalanobis
246
+ distance to any Gaussian component, computed on self.sub_dims, is above
247
+ self.threshold_plus_delta.
248
+ Args:
249
+ samples: Tensor of shape (num_samples, self.d) containing samples
250
+ to check.
251
+ Raises:
252
+ AssertionError: If any sample does not satisfy the local anomaly condition.
253
+ """
254
+ for sample in samples:
255
+ distances = [self.mahalanobis_distance(sample, mean, inv_cov) for mean, inv_cov in
256
+ zip(self.means, self.inv_sub_covariances)]
257
+ assert min(distances) ** 2 > self.threshold_plus_delta
258
+
259
+
260
+ def get_squared_batched_dist(self, raw_samples):
261
+ """
262
+ Compute squared Mahalanobis distances from samples to all GMM components.
263
+ For each sample, this computes its squared Mahalanobis distance to each
264
+ Gaussian component using only self.sub_dims.
265
+ Args:
266
+ raw_samples: Tensor of shape (num_samples, self.d) containing samples
267
+ to evaluate.
268
+ Returns:
269
+ Tensor of shape (num_samples, num_cluster), where entry (i, j) is the
270
+ squared Mahalanobis distance from sample i to component j.
271
+ """
272
+ batch_dist = []
273
+ for mean, inv_cov in zip(self.means, self.inv_sub_covariances):
274
+ distances = self.batched_squared_mahalanobis_distance(X=raw_samples, mean=mean, inv_cov=inv_cov)
275
+ batch_dist.append(distances)
276
+ return torch.stack(batch_dist, dim=1) # (#samples, num_cluster)
277
+
278
+
279
+ def draw_batched_data(self, num_inliers, num_local_anomalies):
280
+ """
281
+ Draw a batch containing both inliers and local anomalies.
282
+
283
+ This method first oversamples candidate inliers from the original GMM and
284
+ candidate anomalies from the inflated GMM. It then filters them using
285
+ Mahalanobis-distance thresholds. If not enough valid samples are found,
286
+ it calls draw_inliers or draw_local_anomalies to fill the missing amount.
287
+
288
+ Args:
289
+ num_inliers: Number of accepted inlier samples to return.
290
+ num_local_anomalies: Number of accepted local anomaly samples to return.
291
+
292
+ Returns:
293
+ A tuple:
294
+ inliers: Tensor of shape (num_inliers, self.d)
295
+ local_anomalies: Tensor of shape (num_local_anomalies, self.d)
296
+ """
297
+ raw_inliers = self.draw_samples(num_samples=int(num_inliers * 2))
298
+ raw_local_anomalies = self.draw_inflated_samples(num_samples=int(num_local_anomalies * 2))
299
+
300
+ inliers_squared_dist = self.get_squared_batched_dist(raw_samples=raw_inliers)
301
+ local_anomalies_squared_dist = self.get_squared_batched_dist(raw_samples=raw_local_anomalies)
302
+
303
+ min_inliers_squared_dist = torch.min(inliers_squared_dist, dim=1).values
304
+ min_local_anomalies_squared_dist = torch.min(local_anomalies_squared_dist, dim=1).values
305
+
306
+ inliers_mask = min_inliers_squared_dist < self.threshold_minus_delta # (#raw-inliers, )
307
+ local_anomalies_mask = min_local_anomalies_squared_dist > self.threshold_plus_delta # (#raw-la, )
308
+
309
+ inliers = raw_inliers[inliers_mask][:num_inliers]
310
+ local_anomalies = raw_local_anomalies[local_anomalies_mask][:num_local_anomalies]
311
+
312
+ def add_extra(existing_samples, target_num_samples, draw_func):
313
+ if existing_samples.shape[0] < target_num_samples:
314
+ extra_samples = draw_func(num_samples=target_num_samples - existing_samples.shape[0])
315
+ existing_samples = torch.concat([existing_samples, extra_samples], dim=0)
316
+ return existing_samples
317
+
318
+ inliers = add_extra(existing_samples=inliers, target_num_samples=num_inliers, draw_func=self.draw_inliers)
319
+ local_anomalies = add_extra(existing_samples=local_anomalies, target_num_samples=num_local_anomalies,
320
+ draw_func=self.draw_local_anomalies)
321
+ return inliers, local_anomalies
322
+
323
+
324
+
325
+ def make_NdMclusterGMM(dim: int, num_cluster: int, weights: torch.Tensor, max_mean: int, max_var: int,
326
+ inflate_full: bool, device, sub_dims=None, percentile=0.80, delta=0.05):
327
+ # Generate means between -max_mean and max_mean
328
+ means = torch.rand(num_cluster, dim, device=device) * \
329
+ torch.randint(low=-max_mean, high=max_mean+1, size=(num_cluster, dim, ), device=device)
330
+
331
+ # Generate diagonal covariance matrices with positive entries between 1 and max_var
332
+ diag_values = torch.rand(num_cluster, dim, device=device) * \
333
+ torch.randint(low=1, high=max_var+1, size=(num_cluster, dim, ), device=device)
334
+ diag_values[diag_values == 0] = max_var / 2
335
+
336
+ # Create batch of diagonal covariance matrices
337
+ covariances = torch.diag_embed(diag_values) # Shape: (num_cluster, dim, dim)
338
+
339
+ N_d_M_cluster_gaussian = GaussianMixtureModel(
340
+ means=means,
341
+ covariances=covariances,
342
+ weights=weights,
343
+ inflate_full=inflate_full,
344
+ sub_dims=sub_dims,
345
+ percentile=percentile,
346
+ delta=delta,
347
+ device=device
348
+ )
349
+ return N_d_M_cluster_gaussian
350
+
351
+
352
+ #================= Helper functions ===================#
353
+ def generate_constrained_eigenvals(d):
354
+ # Generate uniformly distributed values in the range (-0.8, -0.2)
355
+ low_range = np.random.uniform(-1.0, -0.1, size=d)
356
+
357
+ # Generate uniformly distributed values in the range (0.2, 0.8)
358
+ high_range = np.random.uniform(0.1, 1.0, size=d)
359
+
360
+ # Randomly choose between the two ranges for each element
361
+ choice = np.random.choice([0, 1], size=d)
362
+ vector = np.where(choice == 0, low_range, high_range)
363
+
364
+ return vector
365
+
366
+
367
+ def generate_full_rank_matrix(dim, device, scale=1):
368
+ # Generate a random orthogonal matrix using QR decomposition
369
+ A = np.random.rand(dim, dim)
370
+ Q, _ = np.linalg.qr(A)
371
+
372
+ eigenvals = generate_constrained_eigenvals(d=dim)
373
+ eigenvals = np.diag(eigenvals)
374
+
375
+ full_rank_matrix = Q @ eigenvals @ Q.T
376
+ assert np.linalg.matrix_rank(full_rank_matrix) == dim
377
+ if device is None: # source is numpy
378
+ return full_rank_matrix
379
+ else:
380
+ return torch.from_numpy(full_rank_matrix).to(dtype=torch.float, device=device)
381
+
382
+
383
+ def generate_linear_transform(dim, device, A_scale=1, b_scale=1):
384
+ A = generate_full_rank_matrix(dim=dim, device=device, scale=A_scale)
385
+ b = np.random.rand(dim) * np.random.randint(low=-b_scale, high=b_scale + 1, size=dim) # [low, high)
386
+
387
+ if device is not None: # source is torch, transfer from numpy to torch
388
+ b = torch.from_numpy(b).to(dtype=torch.float, device=device)
389
+ return A, b
390
+
391
+
392
+ def transform_means(means, sub_dims, A, b):
393
+ trans = []
394
+ for mean in means:
395
+ new_mean = mean.clone()
396
+ new_mean[sub_dims] = A @ new_mean[sub_dims] + b
397
+ trans.append(new_mean)
398
+ return torch.stack(trans)
399
+
400
+
401
+ def transform_covs(covs, sub_dims, A):
402
+ trans = []
403
+ for cov in covs:
404
+ new_cov = cov.clone()
405
+ new_cov[sub_dims[:, None], sub_dims] = A @ new_cov[sub_dims[:, None], sub_dims] @ A.T
406
+ trans.append(new_cov)
407
+ return torch.stack(trans)
408
+
409
+
410
+ def transform_samples(samples, sub_dims, A, b, is_source_numpy=False):
411
+ if is_source_numpy:
412
+ new_samples = samples.copy()
413
+ else:
414
+ new_samples = samples.clone()
415
+
416
+ if sub_dims is None:
417
+ new_samples = new_samples @ A.T + b
418
+ else:
419
+ new_samples[:, sub_dims] = new_samples[:, sub_dims] @ A.T + b
420
+
421
+ return new_samples
synbench/scm.py ADDED
@@ -0,0 +1,702 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import torch
2
+ import torch.nn as nn
3
+ import numpy as np
4
+ import time
5
+ import math
6
+ import random
7
+
8
+ def lognormal_discrete(mu,
9
+ sigma,
10
+ minval: int,
11
+ maxval: int):
12
+ """
13
+ Sample an integer from a log-normal distribution, clamped to [minval, maxval].
14
+
15
+ Args:
16
+ mu : Mean of the underlying normal distribution.
17
+ sigma : Standard deviation of the underlying normal distribution.
18
+ minval : Minimum integer value (inclusive).
19
+ maxval : Maximum integer value (inclusive).
20
+
21
+ Returns:
22
+ int: A rounded, clipped sample from the log-normal distribution.
23
+ """
24
+ val = int(np.round(np.random.lognormal(mu, sigma)))
25
+ return int(np.clip(val, minval, maxval))
26
+
27
+
28
+ def sample_layers_and_nodes(min_num_layer =2,
29
+ max_num_layer =5,
30
+ min_hidden_size = 3,
31
+ max_hidden_size = 8):
32
+ """
33
+ Randomly sample the number of hidden layers and the hidden-layer width.
34
+
35
+ Uses log-normal priors so moderate values are more likely than extremes.
36
+
37
+ Args:
38
+ min_num_layer : Minimum number of hidden layers (default 2).
39
+ max_num_layer : Maximum number of hidden layers (default 5).
40
+ min_hidden_size : Minimum number of nodes per hidden layer (default 3).
41
+ max_hidden_size : Maximum number of nodes per hidden layer (default 8).
42
+
43
+ Returns:
44
+ Tuple (l, h) where l is the number of layers and h is the hidden size.
45
+ """
46
+ l = lognormal_discrete(mu=0.7, sigma=0.4, minval=min_num_layer, maxval=max_num_layer) # num layers
47
+ h = lognormal_discrete(mu=1.2, sigma=0.5, minval=min_hidden_size, maxval=max_hidden_size) # hidden size
48
+ return l, h
49
+
50
+ @torch.no_grad()
51
+ def sample_noise_distribution(device='cpu'):
52
+ """
53
+ Create a random log-normal noise sampler with randomised parameters.
54
+
55
+ The log-normal parameters are drawn uniformly:
56
+ - mu ~ Uniform(-0.5, 0.5)
57
+ - sigma ~ Uniform(0.05, 0.5)
58
+
59
+ The returned callable samples n independent log-normal values and exposes
60
+ its ``mu`` and ``sigma`` attributes for later inspection.
61
+
62
+ Args:
63
+ device : Torch device on which to allocate noise tensors (default 'cpu').
64
+
65
+ Returns:
66
+ Callable noise_func(n) -> Tensor of shape (n,) drawn from
67
+ LogNormal(mu, sigma). The function has attributes ``mu`` and ``sigma``.
68
+ """
69
+ mu = (torch.rand(1, device=device) - 0.5).item()
70
+ sigma = (torch.rand(1, device=device) * (0.5 - 0.05) + 0.05).item()
71
+ def noise_func(n):
72
+ return torch.exp(mu + sigma * torch.randn(n, device=device))
73
+ noise_func.mu = mu
74
+ noise_func.sigma = sigma
75
+ return noise_func
76
+
77
+ @torch.no_grad()
78
+ def sample_activation(device='cpu'):
79
+ """
80
+ Uniformly sample one activation function from a fixed catalogue.
81
+
82
+ The catalogue contains: tanh, leaky ReLU (slope 0.01), ELU, and identity.
83
+
84
+ Args:
85
+ device : Torch device (unused at runtime but kept for API consistency).
86
+
87
+ Returns:
88
+ Tuple (name: str, fn: Callable) where fn maps a Tensor to a Tensor.
89
+ """
90
+ activations = [
91
+ ("tanh", torch.tanh),
92
+ ("leaky_relu", lambda x: torch.where(x > 0, x, 0.01 * x)),
93
+ ("elu", lambda x: torch.where(x > 0, x, torch.exp(x) - 1)),
94
+ ("identity", lambda x: x),
95
+ ]
96
+ idx = torch.randint(0, len(activations), (1,), device=device).item()
97
+ return activations[idx]
98
+
99
+
100
+ @torch.no_grad()
101
+ def random_noise_scales_per_sample(num_samples, layer_sizes, high_noise=5.0, high_noise_prob=0.2, device='cpu'):
102
+ """
103
+ Generate random noise scales for each sample and node, for each layer.
104
+ Returns: List of tensors, each shape (num_samples, layer_size)
105
+ """
106
+ noise_scales = [
107
+ torch.where(
108
+ torch.rand(num_samples, n, device=device) < high_noise_prob,
109
+ torch.full((num_samples, n), high_noise, device=device),
110
+ torch.ones(num_samples, n, device=device)
111
+ )
112
+ for n in layer_sizes
113
+ ]
114
+ return noise_scales
115
+
116
+
117
+ @torch.no_grad()
118
+ def create_weight_mask(
119
+ num_samples, layers, chosen_nodes, perturb_prob=0.5, device='cpu'
120
+ ):
121
+ """
122
+ Vectorized version: No per-sample loop.
123
+ For each sample and layer, ensures that at least one parent of a chosen node is perturbed.
124
+ """
125
+ masks = []
126
+ node_layer_size = layers[0].weight.shape[0] # assumes all layers same size
127
+
128
+ for l, layer in enumerate(layers):
129
+ weight = layer.weight # (out_features, in_features)
130
+ perturbable = (torch.abs(weight) > 0.5) # (out, in)
131
+ mask = torch.ones(num_samples, *weight.shape, device=device)
132
+
133
+ perturb_mask = (torch.rand(num_samples, *weight.shape, device=device) < perturb_prob) & perturbable.unsqueeze(0)
134
+ flip_mask = torch.rand(num_samples, *weight.shape, device=device) < 0.5
135
+
136
+ mask[perturb_mask & flip_mask] = -1.0
137
+ mask[perturb_mask & (~flip_mask)] = 0.0
138
+
139
+ # Find chosen nodes for this layer (global to local index)
140
+ chosen_nodes_this_layer = [idx for idx in chosen_nodes if (idx // node_layer_size) == l]
141
+ if len(chosen_nodes_this_layer) == 0:
142
+ masks.append(mask)
143
+ continue
144
+
145
+ for cidx in chosen_nodes_this_layer:
146
+ node_idx = cidx % node_layer_size # local node index for this layer
147
+
148
+ # For all samples: find if any parent is perturbed (and perturbable) for this node
149
+ perturbed = ((mask[:, node_idx, :] != 1.0) & perturbable[node_idx, :]) # (num_samples, in_features)
150
+ any_perturbed = perturbed.any(dim=1) # (num_samples,)
151
+
152
+ need_perturb = (~any_perturbed) # (num_samples,)
153
+ num_to_fix = need_perturb.sum().item()
154
+ if num_to_fix == 0:
155
+ continue
156
+
157
+ # For those samples, pick a random eligible parent and force a perturbation
158
+ eligible_parents = perturbable[node_idx, :].nonzero(as_tuple=True)[0]
159
+ if len(eligible_parents) == 0:
160
+ continue
161
+
162
+ # Pick a random parent for each sample needing fix
163
+ rand_idx = torch.randint(0, len(eligible_parents), (num_to_fix,), device=device)
164
+ parent_idx = eligible_parents[rand_idx] # (num_to_fix,)
165
+ sample_idx = need_perturb.nonzero(as_tuple=True)[0] # (num_to_fix,)
166
+
167
+ # Randomly decide flip or zero
168
+ random_flip = (torch.rand(num_to_fix, device=device) < 0.5)
169
+ mask[sample_idx, node_idx, parent_idx] = torch.where(random_flip, -1.0, 0.0)
170
+
171
+ masks.append(mask)
172
+ return masks
173
+
174
+
175
+
176
+ class MaskedLinear(nn.Linear):
177
+ """
178
+ A linear layer whose effective weight matrix is element-wise multiplied by
179
+ a binary (or real-valued) mask, enabling sparse / structured connectivity.
180
+
181
+ Weights are initialised from N(0, 1). The mask is a non-gradient parameter
182
+ that can be set randomly via ``set_random_mask`` or overridden per-sample
183
+ during the forward pass.
184
+ """
185
+
186
+ def __init__(self, in_features, out_features, min_abs=0.35, device='cpu'):
187
+ """
188
+ Initialise MaskedLinear with N(0, 1) weights and an all-ones mask.
189
+
190
+ Args:
191
+ in_features : Size of each input sample.
192
+ out_features : Size of each output sample.
193
+ min_abs : Unused minimum absolute weight threshold (reserved).
194
+ device : Torch device for weight initialisation (default 'cpu').
195
+ """
196
+ super().__init__(in_features, out_features, False)
197
+ # Sample weights from N(0, 1)
198
+ with torch.no_grad():
199
+ w = torch.normal(mean=0., std=1., size=self.weight.shape, device=device)
200
+ # abs_w = torch.clamp(torch.abs(w), min=torch.tensor(min_abs,device=device))
201
+ # w_clipped = torch.sign(w) * abs_w
202
+ self.weight.copy_(w) #_clipped)
203
+ self.mask = nn.Parameter(torch.ones_like(self.weight), requires_grad=False)
204
+
205
+
206
+ def set_random_mask(self, keep_prob=0.7):
207
+ """
208
+ Randomly zero out a fraction of mask entries (Bernoulli dropout-style).
209
+
210
+ Args:
211
+ keep_prob : Probability of keeping each connection (default 0.7).
212
+ Each mask entry is set to 1.0 with this probability and
213
+ 0.0 otherwise.
214
+ """
215
+ with torch.no_grad():
216
+ self.mask[:] = (torch.rand_like(self.mask) < keep_prob).float()
217
+
218
+ def forward(self, input, weight_mask=None):
219
+ """
220
+ Compute the masked linear transformation.
221
+
222
+ When ``weight_mask`` is None the layer behaves like a standard linear
223
+ layer with weights replaced by ``self.weight * self.mask``.
224
+ When ``weight_mask`` is provided (shape ``(batch, out, in)``), each
225
+ sample in the batch gets its own additional per-element weight scaling,
226
+ enabling sample-specific structural perturbations.
227
+
228
+ Args:
229
+ input : Tensor of shape (batch, in_features).
230
+ weight_mask : Optional tensor of shape (batch, out_features, in_features)
231
+ applied on top of the stored mask. ``None`` means no
232
+ per-sample mask is used.
233
+
234
+ Returns:
235
+ Tensor of shape (batch, out_features).
236
+ """
237
+ # input: (batch, in_features)
238
+ # self.weight: (out_features, in_features)
239
+ # weight_mask: (batch, out_features, in_features) or None
240
+ masked_weight = self.weight * self.mask
241
+ if weight_mask is None:
242
+ return nn.functional.linear(input, masked_weight, None)
243
+ # Use per-sample masked weights (batched matmul)
244
+ # weight_mask shape: (batch, out_features, in_features)
245
+ # input shape: (batch, in_features)
246
+ # Expand masked_weight for batch: (1, out_features, in_features)
247
+ batch = input.size(0)
248
+ masked_weight = masked_weight.unsqueeze(0) # (1, out_features, in_features)
249
+ # Broadcast for batch
250
+ weight = masked_weight.expand(batch, -1, -1) * weight_mask # (batch, out_features, in_features)
251
+ # Batched matmul: input (batch, in_features) × weight.transpose(-2, -1) (batch, in_features, out_features)
252
+ # Result: (batch, out_features)
253
+ out = torch.bmm(input.unsqueeze(1), weight.transpose(1,2)).squeeze(1)
254
+ return out
255
+
256
+
257
+
258
+
259
+ class SCM_MLP(nn.Module):
260
+ """
261
+ A multi-layer perceptron used as the functional core of a Structural
262
+ Causal Model (SCM).
263
+
264
+ Each layer is a ``MaskedLinear`` unit followed by additive log-normal
265
+ noise and a randomly chosen activation function. The forward pass
266
+ returns the concatenated hidden activations from all layers, providing a
267
+ rich feature space from which the SCM can select its observable nodes.
268
+ """
269
+
270
+ def __init__(self, hidden_dim, num_layers, activations, device='cuda'):
271
+ """
272
+ Initialise the SCM-MLP.
273
+
274
+ Args:
275
+ hidden_dim : Width of every hidden layer (all layers share the same size).
276
+ num_layers : Number of hidden layers.
277
+ activations : List of callables of length ``num_layers``, one activation
278
+ function per layer.
279
+ device : Torch device (default 'cuda').
280
+ """
281
+ super().__init__()
282
+ self.layers = nn.ModuleList()
283
+ for _ in range(num_layers):
284
+ self.layers.append(MaskedLinear(hidden_dim, hidden_dim,device=device))
285
+ assert len(activations) == len(self.layers)
286
+ self.activations = activations
287
+
288
+ # Per-node noise distributions for each layer and neuron
289
+ self.noise_funcs = [
290
+ [sample_noise_distribution(device) for _ in range(hidden_dim)] # per node
291
+ for _ in range(num_layers)
292
+ ]
293
+
294
+
295
+ def set_masks(self, keep_prob=0.7):
296
+ """
297
+ Apply random binary masks to all layers simultaneously.
298
+
299
+ Args:
300
+ keep_prob : Probability of retaining each weight connection
301
+ (default 0.7). Passed through to
302
+ ``MaskedLinear.set_random_mask``.
303
+ """
304
+ for layer in self.layers:
305
+ layer.set_random_mask(keep_prob)
306
+
307
+
308
+ def forward(self,
309
+ x):
310
+ """
311
+ Standard forward pass: apply each masked layer, add per-node log-normal
312
+ noise, apply the activation, and collect hidden activations.
313
+
314
+ Args:
315
+ x : Input tensor of shape (batch, hidden_dim).
316
+
317
+ Returns:
318
+ Tensor of shape (batch, hidden_dim * num_layers) formed by
319
+ concatenating the post-activation outputs of all layers.
320
+ """
321
+ activations = []
322
+ out = x
323
+ batch_size = x.shape[0]
324
+ for idx, layer in enumerate(self.layers):
325
+ out = layer(out)
326
+ # Generate per-node noise for the whole batch
327
+ noises = torch.stack([
328
+ self.noise_funcs[idx][j](batch_size) # shape (batch,)
329
+ for j in range(out.shape[1])
330
+ ], dim=1) # shape (batch, nodes)
331
+ out = out + noises
332
+ out = self.activations[idx](out)
333
+ activations.append(out)
334
+ return torch.cat(activations, dim=1)
335
+
336
+
337
+ def forward_with_weight_masks(self,
338
+ x,
339
+ noise_std=0.1,
340
+ weight_masks=None):
341
+ """
342
+ Forward pass with optional per-sample weight masks.
343
+
344
+ Applies a distinct weight mask to each sample in the batch, enabling
345
+ sample-specific structural perturbations used when generating structural
346
+ outliers.
347
+
348
+ Args:
349
+ x : Input tensor of shape (batch, in_features).
350
+ noise_std : Unused noise standard deviation (reserved for future use).
351
+ weight_masks : List of tensors, one per layer, each of shape
352
+ (batch, out_features, in_features), or ``None`` for
353
+ no per-sample masking.
354
+
355
+ Returns:
356
+ Tensor of shape (batch, hidden_dim * num_layers) formed by
357
+ concatenating the post-activation outputs of all layers.
358
+ """
359
+ activations = []
360
+ out = x
361
+ batch_size = x.shape[0]
362
+ for idx, layer in enumerate(self.layers):
363
+ mask = weight_masks[idx] if weight_masks is not None else None
364
+ out = layer(out, weight_mask=mask) if mask is not None else layer(out)
365
+ # Generate per-node noise for the whole batch
366
+ noises = torch.stack([
367
+ self.noise_funcs[idx][j](batch_size) # shape (batch,)
368
+ for j in range(out.shape[1])
369
+ ], dim=1) # shape (batch, nodes)
370
+ out = out + noises
371
+ out = self.activations[idx](out)
372
+ activations.append(out)
373
+ return torch.cat(activations, dim=1)
374
+
375
+
376
+
377
+ def forward_with_noise_scales(self,
378
+ x,
379
+ noise_scales=None,
380
+ return_noises=False):
381
+ """
382
+ Forward pass with optional per-sample, per-node noise scaling.
383
+
384
+ Used during probabilistic outlier generation to amplify the log-normal
385
+ noise on selected nodes, pushing their activations to extreme values.
386
+
387
+ Args:
388
+ x : Input tensor of shape (batch, hidden_dim).
389
+ noise_scales : List of tensors, one per layer, each of shape
390
+ (batch, layer_size) containing multiplicative noise
391
+ scale factors. ``None`` defaults to all-ones (no scaling).
392
+ return_noises: If ``True``, also return the raw noise tensors and the
393
+ applied scale tensors (useful for filtering valid outliers).
394
+
395
+ Returns:
396
+ If ``return_noises`` is ``False``:
397
+ Tensor of shape (batch, hidden_dim * num_layers).
398
+ If ``return_noises`` is ``True``:
399
+ Tuple (activations, all_noises, all_scales) where ``all_noises``
400
+ and ``all_scales`` are lists of per-layer tensors.
401
+ """
402
+ activations = []
403
+ out = x
404
+ batch_size = x.shape[0]
405
+ all_noises = []
406
+ all_scales = []
407
+ for idx, layer in enumerate(self.layers):
408
+ out = layer(out)
409
+ noises = torch.stack([
410
+ self.noise_funcs[idx][j](batch_size)
411
+ for j in range(out.shape[1])
412
+ ], dim=1) # (batch, nodes)
413
+ scales = noise_scales[idx] if noise_scales is not None else torch.ones_like(noises)
414
+ noises = noises * scales
415
+ out = out + noises
416
+ out = self.activations[idx](out)
417
+ activations.append(out)
418
+ if return_noises:
419
+ all_noises.append(noises)
420
+ all_scales.append(scales)
421
+ if return_noises:
422
+ return torch.cat(activations, dim=1), all_noises, all_scales
423
+ else:
424
+ return torch.cat(activations, dim=1)
425
+
426
+
427
+ class StructuralCausalModel:
428
+ """
429
+ A randomly instantiated Structural Causal Model (SCM) for generating
430
+ synthetic anomaly-detection datasets.
431
+
432
+ An MLP with masked layers and per-node log-normal noise serves as the
433
+ causal mechanism. A random subset of the hidden nodes is exposed as the
434
+ observable feature vector. Inliers are sampled directly from the model;
435
+ outliers are produced either by amplifying noise (``'prob'``) or by
436
+ perturbing the causal weights (``'structural'``).
437
+ """
438
+
439
+ def __init__(self,
440
+ num_features: int = 3,
441
+ min_num_layer: int = 3,
442
+ max_num_layer: int = 5,
443
+ min_hidden_size: int = 8,
444
+ max_hidden_size: int = 8,
445
+ device='cpu',
446
+ outlier_type='structural',
447
+ drop_weight_prob: float = 0.7,
448
+ ):
449
+ """
450
+ Initialise the SCM by sampling a random MLP architecture.
451
+
452
+ The architecture is resampled until the total number of hidden nodes
453
+ (layers × width) is at least ``num_features``. A random subset of
454
+ those nodes is then selected as the observable features.
455
+
456
+ Args:
457
+ num_features : Number of observable output dimensions.
458
+ min_num_layer : Minimum number of MLP hidden layers.
459
+ max_num_layer : Maximum number of MLP hidden layers.
460
+ min_hidden_size : Minimum width of each hidden layer.
461
+ max_hidden_size : Maximum width of each hidden layer.
462
+ device : Torch device (default 'cpu').
463
+ outlier_type : Outlier strategy – ``'measurement'`` for noise-amplification
464
+ outliers, ``'structural'`` for weight-perturbation
465
+ outliers (default ``'structural'``).
466
+ drop_weight_prob: Probability of retaining each MLP weight connection
467
+ (default 0.7).
468
+ """
469
+ self.device = device
470
+ self.l, self.h = sample_layers_and_nodes(min_num_layer,max_num_layer,min_hidden_size, max_hidden_size)
471
+ while self.l * self.h < num_features:
472
+ self.l, self.h = sample_layers_and_nodes(min_num_layer,max_num_layer,min_hidden_size, max_hidden_size)
473
+ self.activations = [sample_activation(device)[1] for _ in range(self.l)]
474
+ self.mlp = SCM_MLP(self.h, self.l, activations=self.activations, device=device)
475
+ self.mlp = self.mlp.to(device)
476
+ self.mlp.set_masks(keep_prob=drop_weight_prob)
477
+ self.num_features = num_features
478
+ self.chosen_nodes = np.random.choice(self.l * self.h, self.num_features, replace=False)
479
+ self.outlier_type = outlier_type
480
+
481
+ @torch.no_grad()
482
+ def sample_inliers(self, num_samples):
483
+ """
484
+ Sample inlier observations from the SCM.
485
+
486
+ Feeds a constant all-ones input through the MLP (noise is injected
487
+ inside the MLP), then returns the values at the pre-selected
488
+ observable nodes.
489
+
490
+ Args:
491
+ num_samples : Number of inlier observations to generate.
492
+
493
+ Returns:
494
+ Tensor of shape (num_samples, num_features).
495
+ """
496
+ # Constant input; randomness comes from per-node noise inside the MLP
497
+ x = torch.ones((num_samples, self.h), device=self.device)
498
+ acts = self.mlp(x) # shape: (num_samples, total_nodes)
499
+ # Return only the selected nodes for each sample
500
+ return acts[:, self.chosen_nodes]
501
+
502
+ @torch.no_grad()
503
+ def sample_measurement_outliers(self,
504
+ num_samples,
505
+ high_noise=5.0,
506
+ high_noise_prob=0.2,
507
+ batch_factor=2):
508
+ """
509
+ Sample measurement outliers by amplifying per-node noise.
510
+
511
+ A random fraction of nodes receives a noise scale of ``high_noise``
512
+ instead of 1.0. Samples where the amplified noise values actually
513
+ deviate significantly from the base distribution mean are kept;
514
+ the rest are rejected and new candidates are drawn (rejection sampling).
515
+
516
+ Args:
517
+ num_samples : Number of valid outlier samples to collect.
518
+ high_noise : Noise scale applied to the selected anomalous nodes
519
+ (default 5.0).
520
+ high_noise_prob : Probability that any given node receives the high
521
+ noise scale (default 0.2).
522
+ batch_factor : Over-sampling factor to reduce rejection overhead
523
+ (default 2).
524
+
525
+ Returns:
526
+ Tensor of shape (num_samples, num_features).
527
+ """
528
+ collected = []
529
+ while len(collected) < num_samples:
530
+ batch_size = max(int((num_samples - len(collected)) * batch_factor), 10000)
531
+ x = torch.ones((batch_size, self.h), device=self.device)
532
+ layer_sizes = [layer.out_features for layer in self.mlp.layers]
533
+ noise_scales = random_noise_scales_per_sample(
534
+ batch_size, layer_sizes,
535
+ high_noise=high_noise,
536
+ high_noise_prob=high_noise_prob,
537
+ device=self.device
538
+ )
539
+ activations, all_noises, all_noise_scales = self.mlp.forward_with_noise_scales(
540
+ x, noise_scales=noise_scales, return_noises=True
541
+ )
542
+ batch_mask = torch.ones(batch_size, dtype=torch.bool, device=x.device)
543
+ for idx, (noises, scales) in enumerate(zip(all_noises, all_noise_scales)):
544
+ high_noise_mask = (scales == high_noise)
545
+ if high_noise_mask.any():
546
+ # For each node in this layer, get its mean and std
547
+ means = torch.tensor(
548
+ [float(getattr(self.mlp.noise_funcs[idx][j], 'mu', 0.0)) for j in range(noises.shape[1])],
549
+ device=x.device
550
+ )
551
+ stds = torch.tensor(
552
+ [float(getattr(self.mlp.noise_funcs[idx][j], 'sigma', 1.0)) for j in range(noises.shape[1])],
553
+ device=x.device
554
+ )
555
+ thresholds = means + stds # shape: (nodes,)
556
+ # Broadcast to batch shape
557
+ thresholds = thresholds.unsqueeze(0).expand_as(noises)
558
+ means = means.unsqueeze(0).expand_as(noises)
559
+ # Check (for high noise) if |noise - mean| >= threshold
560
+ valid = ((noises - means).abs() >= thresholds) | (~high_noise_mask)
561
+ valid = valid.all(dim=1)
562
+ batch_mask &= valid
563
+ valid_idx = batch_mask.nonzero(as_tuple=True)[0]
564
+ if len(valid_idx) > 0:
565
+ acts_valid = activations[valid_idx][:, self.chosen_nodes]
566
+ collected.append(acts_valid)
567
+ total = sum(x.shape[0] for x in collected)
568
+ if total >= num_samples:
569
+ collected = torch.cat(collected)[:num_samples]
570
+ break
571
+ return collected
572
+
573
+
574
+
575
+ @torch.no_grad()
576
+ def sample_structural_outliers(self, num_samples, perturb_prob=0.2):
577
+ """
578
+ Sample structural outliers by perturbing MLP weight connections.
579
+
580
+ For each sample, a random subset of the causal weights feeding into the
581
+ observable nodes is flipped or zeroed, producing activations that are
582
+ statistically unusual in the context of the inlier distribution.
583
+
584
+ Args:
585
+ num_samples : Number of structural outlier observations to generate.
586
+ perturb_prob : Probability of perturbing each eligible weight
587
+ connection (default 0.2).
588
+
589
+ Returns:
590
+ Tensor of shape (num_samples, num_features).
591
+ """
592
+ x = torch.ones((num_samples, self.h), device=self.device)
593
+ weight_masks = create_weight_mask(
594
+ num_samples, self.mlp.layers, chosen_nodes = self.chosen_nodes, perturb_prob=perturb_prob, device=self.device
595
+ )
596
+ #print('draw weights', time.time()-start)
597
+ acts = self.mlp.forward_with_weight_masks(x, weight_masks=weight_masks)
598
+ return acts[:, self.chosen_nodes]
599
+
600
+
601
+ @torch.no_grad()
602
+ def draw_batched_data(self,
603
+ num_inliers,
604
+ num_local_anomalies):
605
+ """
606
+ Generate a labelled dataset of inliers and outliers.
607
+
608
+ Delegates to ``sample_inliers`` and either ``sample_measurement_outliers`` or
609
+ ``sample_structural_outliers`` depending on ``self.outlier_type``.
610
+
611
+ Args:
612
+ num_inliers : Number of normal observations.
613
+ num_local_anomalies: Number of anomalous observations.
614
+
615
+ Returns:
616
+ Tuple ``(raw_inliers, raw_local_anomalies)`` where each element is a
617
+ Tensor of shape (n, num_features).
618
+ """
619
+ raw_inliers = self.sample_inliers(num_inliers)
620
+ if self.outlier_type == 'measurement':
621
+ raw_local_anomalies = self.sample_measurement_outliers(num_samples=num_local_anomalies)
622
+ elif self.outlier_type == 'structural':
623
+ raw_local_anomalies = self.sample_structural_outliers(num_samples=num_local_anomalies)
624
+ return raw_inliers, raw_local_anomalies
625
+
626
+
627
+
628
+ def make_measurementSCM(max_feature_dim: int,
629
+ min_num_layer: int,
630
+ max_num_layer: int,
631
+ min_hidden_size: int,
632
+ max_hidden_size: int,
633
+ alpha: float,
634
+ beta: float,
635
+ device):
636
+ """
637
+ Factory function for a measurement-outlier SCM.
638
+
639
+ Constructs a ``StructuralCausalModel`` configured to generate outliers via
640
+ noise amplification (``outlier_type='measurement'``) with a fixed weight-keep
641
+ probability of 0.6.
642
+
643
+ Args:
644
+ max_feature_dim : Number of observable feature dimensions.
645
+ min_num_layer : Minimum number of MLP hidden layers.
646
+ max_num_layer : Maximum number of MLP hidden layers.
647
+ min_hidden_size : Minimum hidden-layer width.
648
+ max_hidden_size : Maximum hidden-layer width.
649
+ alpha : Unused (reserved for future parameterisation).
650
+ beta : Unused (reserved for future parameterisation).
651
+ device : Torch device string.
652
+
653
+ Returns:
654
+ A freshly initialised ``StructuralCausalModel`` instance.
655
+ """
656
+ return StructuralCausalModel(num_features = max_feature_dim,
657
+ min_num_layer=min_num_layer,
658
+ max_num_layer = max_num_layer,
659
+ min_hidden_size = min_hidden_size,
660
+ max_hidden_size = max_hidden_size,
661
+ device = device,
662
+ outlier_type = 'measurement',
663
+ drop_weight_prob = 0.6)
664
+
665
+
666
+ def make_structuralSCM(max_feature_dim: int,
667
+ min_num_layer: int,
668
+ max_num_layer: int,
669
+ min_hidden_size: int,
670
+ max_hidden_size: int,
671
+ alpha: float,
672
+ beta: float,
673
+ device):
674
+ """
675
+ Factory function for a structural-outlier SCM.
676
+
677
+ Constructs a ``StructuralCausalModel`` configured to generate outliers via
678
+ causal weight perturbation (``outlier_type='structural'``) with a fixed
679
+ weight-keep probability of 0.6.
680
+
681
+ Args:
682
+ max_feature_dim : Number of observable feature dimensions.
683
+ min_num_layer : Minimum number of MLP hidden layers.
684
+ max_num_layer : Maximum number of MLP hidden layers.
685
+ min_hidden_size : Minimum hidden-layer width.
686
+ max_hidden_size : Maximum hidden-layer width.
687
+ alpha : Unused (reserved for future parameterisation).
688
+ beta : Unused (reserved for future parameterisation).
689
+ device : Torch device string.
690
+
691
+ Returns:
692
+ A freshly initialised ``StructuralCausalModel`` instance.
693
+ """
694
+ return StructuralCausalModel(num_features = max_feature_dim,
695
+ min_num_layer=min_num_layer,
696
+ max_num_layer = max_num_layer,
697
+ min_hidden_size = min_hidden_size,
698
+ max_hidden_size = max_hidden_size,
699
+ device = device,
700
+ outlier_type = 'structural',
701
+ drop_weight_prob = 0.6)
702
+