Upload LOL-EVE eQTL dataset v1.0
Browse files- dataset/dataset_info.json +88 -0
dataset/dataset_info.json
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{
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"citation": "",
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"description": "\n Causal eQTL identification dataset for LOL-EVE model evaluation.\n \n This dataset contains indel variants in promoter regions with:\n - Gene expression data (PIP scores)\n - Basic functional annotations (PhyloP, CADD)\n - Sequence information (WT and variant sequences)\n - Genomic coordinates and variant information\n \n The dataset is designed for evaluating variant effect prediction models\n on causal eQTL identification tasks.\n ",
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"features": {
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"gene": {
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"dtype": "string",
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"_type": "Value"
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},
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"species": {
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"dtype": "string",
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"_type": "Value"
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},
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"clade": {
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"dtype": "string",
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"_type": "Value"
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},
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"chromosome": {
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"dtype": "string",
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"_type": "Value"
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},
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"position": {
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"dtype": "int64",
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"_type": "Value"
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},
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"ref": {
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"dtype": "string",
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"_type": "Value"
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},
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"alt": {
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"dtype": "string",
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"_type": "Value"
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},
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"variant_type": {
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"dtype": "string",
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"_type": "Value"
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},
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"wt_sequence": {
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"dtype": "string",
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"_type": "Value"
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},
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"var_sequence": {
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"dtype": "string",
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"_type": "Value"
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},
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"sequence_length": {
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"dtype": "int64",
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"_type": "Value"
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},
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"wt_sequence_start": {
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"dtype": "int64",
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"_type": "Value"
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},
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"pip": {
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"dtype": "float32",
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"_type": "Value"
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},
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"indel_length": {
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"dtype": "int64",
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"_type": "Value"
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},
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"distance_tss": {
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"dtype": "int64",
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"_type": "Value"
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},
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"gsa_depth": {
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"dtype": "int64",
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"_type": "Value"
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},
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"depth_category": {
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"dtype": "string",
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"_type": "Value"
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},
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"phylop": {
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"dtype": "float32",
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"_type": "Value"
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},
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"cadd": {
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"dtype": "float32",
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"_type": "Value"
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},
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"gc_percentage_delta": {
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"dtype": "float32",
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"_type": "Value"
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}
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},
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"homepage": "https://huggingface.co/Marks-lab/LOL-EVE",
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"license": "mit"
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}
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