RNAgym / tertiary_structure /msa /7yoj_D.afa
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Add tertiary structure datasets and input MSAs
bf08baa verified
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7.32 kB
>query
GTCTGCCGAAGACGCCGCACGGAGCCTGGGCCGGAATCGTAGATCGAACGCGGCATCGAAGCCCTGCAGCCCTTCGGGGCCAAGGCGGCGCAGCAAGCCTCTTTCAGGCGGCAGAGTCCTTTAGAGTGTGAGAGACACTCTAAAGGAATGAAAGAGGGCGACACCCTGGTGAAC
>OY735919.1_34277934_34278441_f/175-334
TTCCGCTGCACATGCACAGAAGTGCTCTGTGTGCA------------ATGC---ACAGAAGCTCTATCGCGCTTTTGCGC---ATGTGCAA---AAACGCCGCTCGGGTTGCGGAATTTTTCGGGGTGTGAATGTCACCCCGGAAGGG---ATCAGGTCCGCAACCCAAGGTAC
>AP013059.1_491228_491737_r/175-336
CAACGCGAAGAACGCCGTGCTCAGGACATGGCGTTCTGG---ACCGACCACGGCGACGAACTCGAGCAGCGCTTCACCGCCTGGGCGTCGAAGTAAGCGCCT-TCGGGCTGCATGACGGTCGCGCTTCGG----CGAAGCGCGACCGAAAA--G---GAGATTCAAGCGTGAAC
>MN109425.1_253_745_r/175-319
GCCTAGT-AAGGGGCCCTAAGGGGCCTTAAGGG---------------------------GCCCTATAGG--------CCCTATAGGGCCCTATAGGGCCCATAGGGCCAGTAGGGCCCTATAGGGCCCTTATAGGGCCCTAAAGGGCCCTATAGGGCCC---GCCCAGTAAGA
>CP090554.1_1090894_1091442_r/175-375
GGTAGACCCAGTTGTCGGATGGAGCGTCGG-------------------G-----------------CGCCG----CGGTCAAGCCGGCGCT-----------------GTCCGCGCCTTAGGGCGTGGAAGAGCCACGCCTTAGGGAAGCGAGAAGCCGA--GCTTGCCGAAA
>OU824208.1_3344_3870_f/65-243
GCTTT---AAGGCGCTTTAAGGAGCTTAAGGCGCTTTAAGCGCTTTAAGGCGCT-TTAAGGCGCTTTACGCTTTAAGGCGCTTTAAGGCGCTTTAAGGCGCTTTAGCGCTTTAAGGCGCTTTAAGGCGCTTAAGGCGCTTTAAGGCGCTTTAAGGCGCTTAAGGCGCTTTAAGG
>GU084820.1_66908_67449_r/170-368
GTTCCCCTTCTTCCCCTAAAGGGGACGGA----GTCCCCTTTA-----------------------------------CCCCTTTAGGGGACGGAGTCCCCTTTAGGGGACGGAGTCCCCTTTAGGGGACGGAGTCCCCTAAAGGGGAAGAAGAAGAG----ACTTTGGTTCCC
>CP133511.1_11532276_11532777_r/175-328
GAGAGCAGAGCCCGGCGCCCAGAGCCCGGCCTGGT-GCGGGGGTCGCACGCCGGGCCGGAGCCCAGCG-----TTGGTTTAGAGGCGCTGTAACCAGCCTCATTCATGCCGCTCCTTA---------ATGACGGATC--------TGATAACGCGGGGTCGTCTCCCAGTGAAC
>LT629803.1_4351552_4352059_f/175-334
GCGCGACGAAGGCGGTGG-TACCGCCTGG-CTGGTGGCGAAGATCGAACGCG---CCGAAGCCGTGG--CCGA---CGACGAAACCCTCGATG---GCCTGATCAAGGCGTCGGACGCTGTGAGGTTGCCCGTGGCGACCT--CGGCGTGGAAATCGGCGACGCCGAGCTGGTC
>CP006852.1_5634954_5635461_f/175-334
GCGCGACGAAGCCGGCGG-TACCGCCTGG-CTGGTGGCGAAGATCGAACGCG---CCGAAGCCGTGGC--CGA---CGACGAAACCCTCGACG---GCCTGATCAAGGCGTCGGACGCCTAATGGTTGCCCGTGGCGACCT--GGGCGTGGAAATCGGTGACGCCGAGCTGATC
>CP063233.1_5779866_5780373_f/175-334
GCGCGACGAAGCCGGCGG-TACCGCCTGG-CTGGTGGCGAAGATCGAACGCG---CCGAAGCCGTGGCT----------CGAAACCCTCGACG---GCCTGATCAAGGCGTCGGACGCCTAATGGTTGCCCGTGGCGACCT--GGGCGTGGAAATCGGTGACGCCGAGCTGATC
>OY735908.1_50700715_50701186_r/175-298
CTTTGCGC-AGGCGCAG--------------------------------------------------------------------CTGCGCAAAAAGCGCCGCTGGGGCTGCAGATT-TTTCGGGGTGCGAACGGCACCCTGGA---ACGGATCAGGTCCGCAACCTGAGGTAC
>OU824208.1_3344_3870_f/335-513
GCTTT---AAGGCGCTTTAAGGCGCTTAAGGCGCTTTAAGCGCTTTAAGGCGCT-TTAAGGCGCTTTACGCTTTAAGGCGCTTTAAGGCGCTTTAAGGCGCTTTAGCGCTTTAAGGCGCTTTAAGGCGCTTAAGGCGCTTTAAGGCGCTTTAAGGCGCTTAAGGCGCTTTAAGG
>OX243812.1_47945825_47946342_r/175-344
GTGTAAAAAAGAAGTGCCA-GGACGCTGTATTGTAATTGGTCGTCAGTGGCGACGCCGAAGGCGCGCAGTTGCGAG-TGCCGAAGGCACTTAGCCCGTCGCGTTCCGACTAGGGGGTCTGGGGGAGCGTCGTAA--GCTCCCCCAGCGGGGTCTGGGGCGGAGCCCCAGCGATC
>GU084820.1_66908_67449_r/235-68
CCGTCCCCTAAAGGGGACTCCGTCCCTAAAGG-------------------C---TTTAGGGGAAGAAGGGGAACACACCTTCGGTTCCCCT-----------------GGGACAACCCTTTAGGGGATGAGAAGTCCCCTAAAGGGGAAGA-AGGGGTTCATCCCCGAAGTTC
>URS00028B7575_71_568_f/175-324
GCAGGCAAA--ACCCCGCACGGAGCAAGG-------------------------ACCGCGTCGCCGCAGCCCGTCAGGGCGAAGGCGGGGCGAC---------------TGCTTGATCCCGTCA---------------TGACGGGGCTAGA---------------AATGATC
>8Y2I_C_1_309_f/76-135
TTCTTCGGAA---------------------------------------------------------------------------------------------------CGAAGAT-------------------------------TTCAAAGAGGGCGACACCCTGGTGAAC
>MN109425.1_253_745_r/392-237
ATTTCAGGTGAA-------AATGGGCCCATTTTGGGCCCATTTTGGGC-CCATTTTGGGCCCATTTTGGCCCTTTTGGGCCTCT------TACTGGGCCCCTTGGGGGCCCTAGGGCCCTTTAGGGCCCTATAAGGGCCCTATAGGGCCCTACTGGG------CCCCTATGGGC
>URS00023A0A1E_6233_6606_f/174-198
-----------------------------------------------------------------------------------------------------------------------CTTAGAGTGTGAGAGACACTCTAAG------------------------------
>CP142135.1_13901415_13901788_r/175-197
------------------------------------------------------------------------------------------------------------------------TTAGAGTGTGAGAGACACTCTAA-------------------------------
>CP142131.1_34702512_34702892_f/127-223
TCAAG----------------------------------------------------------------------------------------------------------CTTGATTATTTAGAGTGTGAGAGTCACTCTAAGGGAATTAA-TCAAG-----CTTGGGTTAGC
>CP142131.1_36520365_36520744_r/175-197
------------------------------------------------------------------------------------------------------------------------TTAGAGTGTGCGAGACACTCTAA-------------------------------
>URS0002283304_4702_5070_f/103-195
GGCT------------------------------------------------------------------------------------------------------------AGCGCACC-----------------------GGTGAAGTTCGAGGGCGACACCCTGGTGAAC
>CP141155.1_3938570_3938954_f/141-223
TTAGGAT-------------------------------------------------------------------------------------------------------TCCTGGTCCTTTAGAGAGAGAGAG--ACTCTAAGGGAATGAAAGC-----------GGTTTTAA
>OU824208.1_3344_3870_f/265-331
GCTT------------------------------------------------------------------------------------------------------------AAGGCGCTTTAAGGCGCTTAAGGCGCTTTAAGGCGCTTTAAGGCGCTTTAAG-GCGTTGTAA
>7YOJ_B_1_348_f/147-117
--------------------------------------------------------------------------------------------------------------------TCCTTTAGAGTGTCTCTCACACTCTAAAGGA---------------------------
>URS0000E73C41_230_603_f/172-204
----------------CCACGGAG-------------------------------------CCCTGCAGCCCCTCGGGGCCAGAGG----------------------------------------------------------------------------------------
>AP012551.1_3155240_3155625_f/143-211
-------------GCCGCGCACAGCCTGTGCT-------------------GGCATCAAAGCGCTGCAGCCCTTC--GGCCATGGCGGC-------------------------------------------------------------------------------------
>URS00023AD7FF_3307_3683_f/198-174
-----------------------------------------------------------------------------------------------------------------------CTTAGAGTGTCTCACACACTCTAAG------------------------------
>URS0000DC1F59_1_488_f/336-288
--------------------------------------------------------------------------------------------------------------------------AGGGGCCG--AAGCCCCCTAATACAAGAAAAGGGGCCGA-AGCCCCTTTAAT
>URS0000DDD701_1_488_f/336-288
--------------------------------------------------------------------------------------------------------------------------AGGGGCCG--AAGCCCCCTAATATAAGAAAAGGGGCCGA-AGCCCCTTTAAT
>URS000275C6D6_1_501_f/71-167
TGGAGGCG-----------------------------------------------------------------------------------------------------GCCACCTCCACCTAAGAGCATGGAGTGTTCTTAGGTGGGGGTGCACTGGTCTCGACAGGGTGAAC
>OY284438.1_21853127_21853503_f/198-174
-----------------------------------------------------------------------------------------------------------------------CTTAGAGTGTCTCTCACACTCTAAG------------------------------
>CP139296.1_12785163_12785539_r/259-144
CTTTTCTA-----------------------------------------------------------------------------------------------------AGTAAATTCCTTTAGAGTGTCTCGCACACTCTAAGTGTACAAAGAGAAGAGAAATAAAGGTGTAC
>OU824208.1_3344_3870_f/24-55
--------------------------------------------------------------------------------------------------------------------CGCTTTAAGGCGCTTAAGGCGCTTTAAGGCG---------------------------