Download MedEvalKit/utils/CMB/CMB.py from Master-Shi/ExplainableVQA: direct link, hf CLI and curl.
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https://huggingface.co/datasets/Master-Shi/ExplainableVQA/resolve/main/MedEvalKit/utils/CMB/CMB.py
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hf download hf://datasets/Master-Shi/ExplainableVQA/MedEvalKit/utils/CMB/CMB.py
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curl -L -o CMB.py https://huggingface.co/datasets/Master-Shi/ExplainableVQA/resolve/main/MedEvalKit/utils/CMB/CMB.py
2.65 kB
| import torch | |
| import os | |
| import json | |
| import gc | |
| import csv | |
| from PIL import Image | |
| from datasets import load_dataset,load_from_disk | |
| from collections import defaultdict | |
| from tqdm import tqdm | |
| from ..utils import save_json,extract,judge_multi_choice | |
| from ..base_dataset import BaseDataset | |
| from ..question_formats import get_multiple_choice_prompt | |
| medical_subject = ["anatomy","clinical_knowledge","college_biology","college_medicine","medical_genetics","professional_medicine","nutrition","virology","high_school_biology"] | |
| class CMB(BaseDataset): | |
| def __init__(self,model,dataset_path,output_path): | |
| self.model = model | |
| self.output_path = output_path | |
| self.dataset_path = dataset_path if dataset_path else "FreedomIntelligence/CMB" | |
| self.samples = [] | |
| self.chunk_idx = int(os.environ.get("chunk_idx",0)) | |
| self.num_chunks = int(os.environ.get("num_chunks",1)) | |
| def load_data(self): | |
| dataset = load_dataset(self.dataset_path,"CMB-Exam")["test"] | |
| # print(len(dataset)) | |
| for idx,sample in tqdm(enumerate(dataset)): | |
| if idx % self.num_chunks == self.chunk_idx: | |
| if sample["question_type"] == "单项选择题": | |
| sample = self.construct_messages(sample) | |
| self.samples.append(sample) | |
| return self.samples | |
| def construct_messages(self,sample): | |
| # import pdb;pdb.set_trace() | |
| option = sample["option"] | |
| choices = sample["option"] | |
| answer = sample["answer"] | |
| question = sample["question"] | |
| choices = [a["value"] for a in option] | |
| choices = [f"{a['key']}.{a['value']}" for a in option] | |
| is_reasoning = True if os.environ.get("REASONING","False") == "True" else False | |
| prompt = get_multiple_choice_prompt(question,choices,is_reasoning,lang = "zh") | |
| messages = {"prompt":prompt} | |
| sample["prompt"] = prompt | |
| sample["messages"] = messages | |
| sample["choices"] = choices | |
| # import pdb;pdb.set_trace() | |
| return sample | |
| def cal_metrics(self,out_samples): | |
| total = 0 | |
| right = 0 | |
| for i,sample in enumerate(out_samples): | |
| response = sample["response"] | |
| response = extract(response,"answer") | |
| choices = sample["choices"] | |
| answer = sample["answer"] | |
| correct = judge_multi_choice(choices,answer,response) | |
| out_samples[i]["correct"] = correct | |
| if correct: | |
| right += 1 | |
| total += 1 | |
| metrics = {"total metrics":{"total":total,"right":right,"acc":right/total}} | |
| return metrics,out_samples |