Download MedEvalKit/utils/HealthBench/HealthBench.py from Master-Shi/ExplainableVQA: direct link, hf CLI and curl.
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- Download file 8.12 kB
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https://huggingface.co/datasets/Master-Shi/ExplainableVQA/resolve/main/MedEvalKit/utils/HealthBench/HealthBench.py
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hf download hf://datasets/Master-Shi/ExplainableVQA/MedEvalKit/utils/HealthBench/HealthBench.py
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curl -L -o HealthBench.py https://huggingface.co/datasets/Master-Shi/ExplainableVQA/resolve/main/MedEvalKit/utils/HealthBench/HealthBench.py
8.12 kB
| import torch | |
| import os | |
| import json | |
| import gc | |
| import csv | |
| import asyncio | |
| from PIL import Image | |
| from datasets import load_dataset,load_from_disk | |
| from collections import defaultdict | |
| from tqdm import tqdm | |
| from .utils import RubricItem,GRADER_TEMPLATE,calculate_score,_aggregate_get_clipped_mean,parse_json_to_dict | |
| from ..utils import save_json,extract,judger,deal_tasks | |
| from ..base_dataset import BaseDataset | |
| def read_jsonl(jsonl_path): | |
| new_datas = [] | |
| with open(jsonl_path,"r") as f: | |
| datas = f.readlines() | |
| for line in datas: | |
| data = json.loads(line) | |
| new_datas.append(data) | |
| return new_datas | |
| class HealthBench(BaseDataset): | |
| def __init__(self,model,dataset_path,output_path): | |
| self.model = model | |
| self.output_path = output_path | |
| self.dataset_path = dataset_path if dataset_path is not None else './datas/HealthBench' | |
| self.samples = [] | |
| self.chunk_idx = int(os.environ.get("chunk_idx",0)) | |
| self.num_chunks = int(os.environ.get("num_chunks",1)) | |
| def load_data(self): | |
| self.maybe_download_dataset() | |
| dataset_path = self.dataset_path | |
| dataset = [] | |
| consensus_path = os.path.join(dataset_path,"consensus_2025-05-09-20-00-46.jsonl") | |
| hard_path = os.path.join(dataset_path,"hard_2025-05-08-21-00-10.jsonl") | |
| eval_path = os.path.join(dataset_path,"2025-05-07-06-14-12_oss_eval.jsonl") | |
| consensus_dataset = read_jsonl(consensus_path) | |
| hard_dataset = read_jsonl(hard_path) | |
| eval_dataset = read_jsonl(eval_path) | |
| for data in eval_dataset: | |
| data["dataset_type"] = "normal" | |
| dataset.append(data) | |
| for data in consensus_dataset: | |
| data["dataset_type"] = "consensus" | |
| dataset.append(data) | |
| for data in hard_dataset: | |
| data["dataset_type"] = "hard" | |
| dataset.append(data) | |
| for idx,sample in tqdm(enumerate(dataset)): | |
| if idx % self.num_chunks == self.chunk_idx: | |
| sample = self.construct_messages(sample) | |
| self.samples.append(sample) | |
| return self.samples | |
| def construct_messages(self,sample): | |
| prompt = sample["prompt"] | |
| messages = {"messages":prompt} | |
| sample["messages"] = messages | |
| return sample | |
| def cal_metrics(self,out_samples): | |
| async def deal_sample(sample): | |
| prompt = sample["prompt"] | |
| response = sample["response"] | |
| rubrics = sample["rubrics"] | |
| example_tags = sample["example_tags"] | |
| rubric_items = [RubricItem.from_dict(d) for d in rubrics] | |
| conversations = prompt + [dict(content=response, role="assistant")] | |
| conversations = "\n\n".join( | |
| [f"{m['role']}: {m['content']}" for m in conversations] | |
| ) | |
| grading_response_list = [] | |
| for rubric_item in tqdm(rubric_items): | |
| grader_prompt = GRADER_TEMPLATE.replace( | |
| "<<conversation>>", conversations | |
| ).replace("<<rubric_item>>", str(rubric_item)) | |
| messages: MessageList = [dict(content=grader_prompt, role="user")] | |
| while True: | |
| _,grading_response = await judger.generate_output_async(0,messages,temperature=0.6) | |
| if not grading_response: | |
| continue | |
| grading_response_dict = parse_json_to_dict(grading_response) | |
| if "criteria_met" in grading_response_dict: | |
| label = grading_response_dict["criteria_met"] | |
| if label is True or label is False: | |
| break | |
| print("Grading failed due to bad JSON output, retrying...") | |
| grading_response_list.append(grading_response_dict) | |
| sample["grading_response_list"] = grading_response_list | |
| overall_score = calculate_score(rubric_items, grading_response_list) | |
| # compute the overall score | |
| if overall_score is None: | |
| sample["metrics"] = None | |
| sample["readable_explanation_str"] = None | |
| sample["rubric_items_with_grades"] = None | |
| return sample | |
| metrics = { | |
| "overall_score": overall_score, | |
| } | |
| # compute scores for example-level tags) | |
| example_tag_scores = {tag: overall_score for tag in example_tags} | |
| if len(example_tag_scores) != len(example_tags): | |
| sample["metrics"] = None | |
| sample["readable_explanation_str"] = None | |
| sample["rubric_items_with_grades"] = None | |
| return sample | |
| metrics.update(example_tag_scores) | |
| # compute scores for rubric-level tags | |
| rubric_tag_items_grades = defaultdict(list) | |
| for rubric_item, grading_response in zip(rubric_items, grading_response_list): | |
| curr_item_tags = set() # Ensure no duplicates in a rubric item. | |
| for tag in rubric_item.tags: | |
| rubric_tag_items_grades[tag].append((rubric_item, grading_response)) | |
| assert tag not in curr_item_tags | |
| curr_item_tags.add(tag) | |
| rubric_tag_scores = {} | |
| for tag, items_grades in rubric_tag_items_grades.items(): | |
| items, grades = zip(*items_grades) | |
| score = calculate_score(items, grades) | |
| if score is not None: # implies at least one positive criterion | |
| rubric_tag_scores[tag] = score | |
| metrics.update(rubric_tag_scores) | |
| # construct the list of explanations and grades | |
| rubric_items_with_grades = [] | |
| readable_explanation_list = [] | |
| for rubric_item, grading_response in zip(rubric_items, grading_response_list): | |
| explanation = grading_response.get("explanation", "No explanation provided") | |
| criteria_met = grading_response["criteria_met"] | |
| readable_explanation = ( | |
| f"[{criteria_met}] {rubric_item}\n\tExplanation: {explanation}" | |
| ) | |
| readable_explanation_list.append(readable_explanation) | |
| rubric_items_with_grades.append( | |
| { | |
| **rubric_item.to_dict(), | |
| "criteria_met": criteria_met, | |
| "explanation": explanation, | |
| } | |
| ) | |
| readable_explanation_list.sort( | |
| key=lambda x: x.startswith("[False]"), reverse=True | |
| ) | |
| readable_explanation_str = "\n\n".join(readable_explanation_list) | |
| readable_explanation_str = f"\n\n{readable_explanation_str}" | |
| sample["metrics"] = metrics | |
| sample["readable_explanation_str"] = readable_explanation_str | |
| sample["rubric_items_with_grades"] = rubric_items_with_grades | |
| return sample | |
| tasks = [] | |
| for sample in out_samples: | |
| tasks.append(deal_sample(sample)) | |
| out_samples = asyncio.run(deal_tasks(tasks)) | |
| metrics = _aggregate_get_clipped_mean(out_samples) | |
| return metrics,out_samples | |
| def maybe_download_dataset(self): | |
| if not os.path.exists(self.dataset_path): | |
| if self.chunk_idx!=0: | |
| raise ValueError("Chunk inference is not support for download. Try to run eval.sh insteal of eval_chunked.sh") | |
| self._download_file_local(local_path=self.dataset_path,url='https://openaipublic.blob.core.windows.net/simple-evals/healthbench/2025-05-07-06-14-12_oss_eval.jsonl') | |
| self._download_file_local(local_path=self.dataset_path,url='https://openaipublic.blob.core.windows.net/simple-evals/healthbench/hard_2025-05-08-21-00-10.jsonl') | |
| self._download_file_local(local_path=self.dataset_path,url='https://openaipublic.blob.core.windows.net/simple-evals/healthbench/consensus_2025-05-09-20-00-46.jsonl') | |