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  1. benchmarks/VGMED/image_folder/SAMed2D_v1/fundus_photography/images/fundus_photography--PALM19--H0008--2d_none.png +3 -0
  2. benchmarks/VGMED/image_folder/SAMed2D_v1/fundus_photography/images/fundus_photography--PALM19--N0038--2d_none.png +3 -0
  3. benchmarks/VGMED/image_folder/SAMed2D_v1/fundus_photography/images/fundus_photography--PALM19--T0098--2d_none.png +3 -0
  4. benchmarks/VGMED/image_folder/SAMed2D_v1/fundus_photography/images/fundus_photography--PALM19--T0146--2d_none.png +3 -0
  5. 之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/datas/Radrestruct/test_qa_pairs/1245.json +1 -0
  6. 之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/datas/Radrestruct/test_qa_pairs/2858.json +1 -0
  7. 之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/datas/Radrestruct/test_qa_pairs/3327.json +1 -0
  8. 之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/diff_text/diff_text_COCO_MedGemma_27B_IT.sh +24 -0
  9. 之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_COCO_HuatuoGPT_V_34B.sh +24 -0
  10. 之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_COCO_LLaVA_13B.sh +24 -0
  11. 之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_COCO_LLaVA_7B.sh +24 -0
  12. 之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_COCO_LLaVA_Med_7B.sh +24 -0
  13. 之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_COCO_MedGemma_27B_IT.sh +24 -0
  14. 之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_COCO_Qwen25VL_32B.sh +24 -0
  15. 之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_COCO_Qwen25VL_3B.sh +24 -0
  16. 之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_VGMED_HuatuoGPT_V_34B.sh +21 -0
  17. 之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_VGMED_LLaVA_7B.sh +21 -0
  18. 之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_VGMED_LLaVA_Med_7B.sh +21 -0
  19. 之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_VGMED_Qwen25VL_32B.sh +21 -0
  20. 之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_VGMED_Qwen25VL_3B.sh +21 -0
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之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/datas/Radrestruct/test_qa_pairs/1245.json ADDED
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+ [["Are there any foreign objects?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "foreign objects_objects"}], ["Are there any signs in the lung?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lung_signs"}], ["Is there anything abnormal in the lung?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lung_body_regions"}], ["Are there any diseases in the lung?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lung_diseases"}], ["Are there any signs in the pleura?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "pleura_signs"}], ["Is there anything abnormal in the pleura?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "pleura_body_regions"}], ["Are there any diseases in the pleura?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "pleura_diseases"}], ["Are there any signs in the trachea?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "trachea_signs"}], ["Is there anything abnormal in the trachea?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "trachea_body_regions"}], ["Are there any diseases in the trachea?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "trachea_diseases"}], ["Are there any signs in the cardiovascular system?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_signs"}], ["Is there anything abnormal in the cardiovascular system?", ["yes"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_body_regions"}], ["Is there anything abnormal in the aorta?", ["yes"], [["Is there anything abnormal in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_body_regions_aorta"}], ["What are the attributes?", ["tortuous"], [["Is there anything abnormal in the cardiovascular system?", ["yes"]], ["Is there anything abnormal in the aorta?", ["yes"]]], {"answer_type": "multi_choice", "options": ["no selection", "obscured", "prominent", "tortuous"], "path": "cardiovascular system_body_regions_aorta_attributes"}], ["What is the degree?", ["no selection"], [["Is there anything abnormal in the cardiovascular system?", ["yes"]], ["Is there anything abnormal in the aorta?", ["yes"]], ["What are the attributes?", ["tortuous"]]], {"answer_type": "multi_choice", "options": ["enlarged", "mild", "no selection"], "path": "cardiovascular system_body_regions_aorta_degree"}], ["Is there anything else abnormal in the aorta?", ["no"], [["Is there anything abnormal in the cardiovascular system?", ["yes"]], ["Is there anything abnormal in the aorta?", ["yes"]], ["What are the attributes?", ["tortuous"]], ["What is the degree?", ["no selection"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_body_regions_aorta"}], ["Is there anything abnormal in the aorta, thoracic?", ["no"], [["Is there anything abnormal in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_body_regions_aorta, thoracic"}], ["Is there anything abnormal in the pulmonary artery?", ["no"], [["Is there anything abnormal in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_body_regions_pulmonary artery"}], ["Is there anything abnormal in the heart?", ["no"], [["Is there anything abnormal in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_body_regions_heart"}], ["Is there anything abnormal in the heart atria?", ["no"], [["Is there anything abnormal in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_body_regions_heart atria"}], ["Is there anything abnormal in the heart ventricles?", ["no"], [["Is there anything abnormal in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_body_regions_heart ventricles"}], ["Are there any diseases in the cardiovascular system?", ["yes"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_diseases"}], ["Is there aortic aneurysm in the cardiovascular system?", ["no"], [["Are there any diseases in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_diseases_aortic aneurysm"}], ["Is there atherosclerosis in the cardiovascular system?", ["no"], [["Are there any diseases in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_diseases_atherosclerosis"}], ["Is there cardiomegaly in the cardiovascular system?", ["yes"], [["Are there any diseases in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_diseases_cardiomegaly"}], ["What is the degree?", ["no selection"], [["Are there any diseases in the cardiovascular system?", ["yes"]], ["Is there cardiomegaly in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["borderline", "mild", "moderate", "no selection", "severe"], "path": "cardiovascular system_diseases_cardiomegaly_degree"}], ["Is there heart failure in the cardiovascular system?", ["no"], [["Are there any diseases in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_diseases_heart failure"}], ["Is there pericardial effusion in the cardiovascular system?", ["no"], [["Are there any diseases in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_diseases_pericardial effusion"}], ["Is there calcinosis in the cardiovascular system?", ["no"], [["Are there any diseases in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_diseases_calcinosis"}], ["Is there cicatrix in the cardiovascular system?", ["no"], [["Are there any diseases in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_diseases_cicatrix"}], ["Is there calcified granuloma in the cardiovascular system?", ["no"], [["Are there any diseases in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_diseases_calcified granuloma"}], ["Is there nodule in the cardiovascular system?", ["no"], [["Are there any diseases in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_diseases_nodule"}], ["Are there any signs in the skeletal system?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_signs"}], ["Is there anything abnormal in the skeletal system?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_body_regions"}], ["Are there any diseases in the skeletal system?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_diseases"}], ["Are there any signs in the breast?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "breast_signs"}], ["Are there any diseases in the breast?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "breast_diseases"}], ["Are there any signs in the abdomen?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "abdomen_signs"}], ["Is there anything abnormal in the abdomen?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "abdomen_infos"}], ["Are there any diseases in the abdomen?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "abdomen_diseases"}], ["Are there any signs in the thorax?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "thorax_signs"}], ["Are there any diseases in the thorax?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "thorax_diseases"}], ["Are there any signs in the mediastinum?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "mediastinum_signs"}], ["Is there anything abnormal in the mediastinum?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "mediastinum_infos"}], ["Are there any diseases in the mediastinum?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "mediastinum_diseases"}], ["Is there anything abnormal in the lymph nodes?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lymph nodes_infos"}], ["Are there any diseases in the lymph nodes?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lymph nodes_diseases"}]]
之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/datas/Radrestruct/test_qa_pairs/2858.json ADDED
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+ [["Are there any foreign objects?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "foreign objects_objects"}], ["Are there any signs in the lung?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lung_signs"}], ["Is there anything abnormal in the lung?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lung_body_regions"}], ["Are there any diseases in the lung?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lung_diseases"}], ["Are there any signs in the pleura?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "pleura_signs"}], ["Is there anything abnormal in the pleura?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "pleura_body_regions"}], ["Are there any diseases in the pleura?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "pleura_diseases"}], ["Are there any signs in the trachea?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "trachea_signs"}], ["Is there anything abnormal in the trachea?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "trachea_body_regions"}], ["Are there any diseases in the trachea?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "trachea_diseases"}], ["Are there any signs in the cardiovascular system?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_signs"}], ["Is there anything abnormal in the cardiovascular system?", ["yes"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_body_regions"}], ["Is there anything abnormal in the aorta?", ["yes"], [["Is there anything abnormal in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_body_regions_aorta"}], ["What are the attributes?", ["tortuous"], [["Is there anything abnormal in the cardiovascular system?", ["yes"]], ["Is there anything abnormal in the aorta?", ["yes"]]], {"answer_type": "multi_choice", "options": ["no selection", "obscured", "prominent", "tortuous"], "path": "cardiovascular system_body_regions_aorta_attributes"}], ["What is the degree?", ["no selection"], [["Is there anything abnormal in the cardiovascular system?", ["yes"]], ["Is there anything abnormal in the aorta?", ["yes"]], ["What are the attributes?", ["tortuous"]]], {"answer_type": "multi_choice", "options": ["enlarged", "mild", "no selection"], "path": "cardiovascular system_body_regions_aorta_degree"}], ["Is there anything else abnormal in the aorta?", ["no"], [["Is there anything abnormal in the cardiovascular system?", ["yes"]], ["Is there anything abnormal in the aorta?", ["yes"]], ["What are the attributes?", ["tortuous"]], ["What is the degree?", ["no selection"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_body_regions_aorta"}], ["Is there anything abnormal in the aorta, thoracic?", ["no"], [["Is there anything abnormal in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_body_regions_aorta, thoracic"}], ["Is there anything abnormal in the pulmonary artery?", ["no"], [["Is there anything abnormal in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_body_regions_pulmonary artery"}], ["Is there anything abnormal in the heart?", ["no"], [["Is there anything abnormal in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_body_regions_heart"}], ["Is there anything abnormal in the heart atria?", ["no"], [["Is there anything abnormal in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_body_regions_heart atria"}], ["Is there anything abnormal in the heart ventricles?", ["no"], [["Is there anything abnormal in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_body_regions_heart ventricles"}], ["Are there any diseases in the cardiovascular system?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_diseases"}], ["Are there any signs in the skeletal system?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_signs"}], ["Is there anything abnormal in the skeletal system?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_body_regions"}], ["Are there any diseases in the skeletal system?", ["yes"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_diseases"}], ["Is there arthritis in the skeletal system?", ["no"], [["Are there any diseases in the skeletal system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_diseases_arthritis"}], ["Is there bone diseases, metabolic in the skeletal system?", ["no"], [["Are there any diseases in the skeletal system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_diseases_bone diseases, metabolic"}], ["Is there dislocations in the skeletal system?", ["no"], [["Are there any diseases in the skeletal system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_diseases_dislocations"}], ["Is there expansile bone lesions in the skeletal system?", ["no"], [["Are there any diseases in the skeletal system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_diseases_expansile bone lesions"}], ["Is there fractures, bone in the skeletal system?", ["no"], [["Are there any diseases in the skeletal system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_diseases_fractures, bone"}], ["Is there funnel chest in the skeletal system?", ["no"], [["Are there any diseases in the skeletal system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_diseases_funnel chest"}], ["Is there hyperostosis, diffuse idiopathic skeletal in the skeletal system?", ["no"], [["Are there any diseases in the skeletal system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_diseases_hyperostosis, diffuse idiopathic skeletal"}], ["Is there kyphosis in the skeletal system?", ["no"], [["Are there any diseases in the skeletal system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_diseases_kyphosis"}], ["Is there osteophyte in the skeletal system?", ["yes"], [["Are there any diseases in the skeletal system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_diseases_osteophyte"}], ["In which part of the body?", ["thoracic vertebrae"], [["Are there any diseases in the skeletal system?", ["yes"]], ["Is there osteophyte in the skeletal system?", ["yes"]]], {"answer_type": "single_choice", "options": ["cervical vertebrae", "lumbar vertebrae", "shoulder", "spine", "thoracic vertebrae"], "path": "skeletal system_diseases_osteophyte_body_region"}], ["In which area?", ["unspecified"], [["Are there any diseases in the skeletal system?", ["yes"]], ["Is there osteophyte in the skeletal system?", ["yes"]], ["In which part of the body?", ["thoracic vertebrae"]]], {"answer_type": "single_choice", "options": ["anterior", "right", "unspecified"], "path": "skeletal system_diseases_osteophyte_localization"}], ["What are the attributes?", ["no selection"], [["Are there any diseases in the skeletal system?", ["yes"]], ["Is there osteophyte in the skeletal system?", ["yes"]], ["In which part of the body?", ["thoracic vertebrae"]], ["In which area?", ["unspecified"]]], {"answer_type": "multi_choice", "options": ["degenerative", "large", "multiple", "no selection", "prominent", "scattered", "small"], "path": "skeletal system_diseases_osteophyte_attributes"}], ["What is the degree?", ["mild"], [["Are there any diseases in the skeletal system?", ["yes"]], ["Is there osteophyte in the skeletal system?", ["yes"]], ["In which part of the body?", ["thoracic vertebrae"]], ["In which area?", ["unspecified"]], ["What are the attributes?", ["no selection"]]], {"answer_type": "single_choice", "options": ["mild", "no selection", "severe"], "path": "skeletal system_diseases_osteophyte_degree"}], ["Is there another case of osteophyte in the skeletal system?", ["no"], [["Are there any diseases in the skeletal system?", ["yes"]], ["Is there osteophyte in the skeletal system?", ["yes"]], ["In which part of the body?", ["thoracic vertebrae"]], ["In which area?", ["unspecified"]], ["What are the attributes?", ["no selection"]], ["What is the degree?", ["mild"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_diseases_osteophyte"}], ["Is there pectus carinatum in the skeletal system?", ["no"], [["Are there any diseases in the skeletal system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_diseases_pectus carinatum"}], ["Is there scoliosis in the skeletal system?", ["no"], [["Are there any diseases in the skeletal system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_diseases_scoliosis"}], ["Is there sclerosis in the skeletal system?", ["no"], [["Are there any diseases in the skeletal system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_diseases_sclerosis"}], ["Is there spondylosis in the skeletal system?", ["no"], [["Are there any diseases in the skeletal system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_diseases_spondylosis"}], ["Is there granuloma in the skeletal system?", ["no"], [["Are there any diseases in the skeletal system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_diseases_granuloma"}], ["Is there subcutaneous emphysema in the skeletal system?", ["no"], [["Are there any diseases in the skeletal system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_diseases_subcutaneous emphysema"}], ["Is there calcinosis in the skeletal system?", ["no"], [["Are there any diseases in the skeletal system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_diseases_calcinosis"}], ["Is there cicatrix in the skeletal system?", ["no"], [["Are there any diseases in the skeletal system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_diseases_cicatrix"}], ["Is there cysts in the skeletal system?", ["no"], [["Are there any diseases in the skeletal system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_diseases_cysts"}], ["Are there any signs in the breast?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "breast_signs"}], ["Are there any diseases in the breast?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "breast_diseases"}], ["Are there any signs in the abdomen?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "abdomen_signs"}], ["Is there anything abnormal in the abdomen?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "abdomen_infos"}], ["Are there any diseases in the abdomen?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "abdomen_diseases"}], ["Are there any signs in the thorax?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "thorax_signs"}], ["Are there any diseases in the thorax?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "thorax_diseases"}], ["Are there any signs in the mediastinum?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "mediastinum_signs"}], ["Is there anything abnormal in the mediastinum?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "mediastinum_infos"}], ["Are there any diseases in the mediastinum?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "mediastinum_diseases"}], ["Is there anything abnormal in the lymph nodes?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lymph nodes_infos"}], ["Are there any diseases in the lymph nodes?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lymph nodes_diseases"}]]
之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/datas/Radrestruct/test_qa_pairs/3327.json ADDED
@@ -0,0 +1 @@
 
 
1
+ [["Are there any foreign objects?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "foreign objects_objects"}], ["Are there any signs in the lung?", ["yes"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lung_signs"}], ["Is there a airspace disease in the lung?", ["no"], [["Are there any signs in the lung?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lung_signs_airspace disease"}], ["Is there an consolidation in the lung?", ["no"], [["Are there any signs in the lung?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lung_signs_consolidation"}], ["Is there an deformity in the lung?", ["no"], [["Are there any signs in the lung?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lung_signs_deformity"}], ["Is there an density in the lung?", ["no"], [["Are there any signs in the lung?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lung_signs_density"}], ["Is there an lucency in the lung?", ["no"], [["Are there any signs in the lung?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lung_signs_lucency"}], ["Is there an markings in the lung?", ["no"], [["Are there any signs in the lung?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lung_signs_markings"}], ["Is there an nipple shadow in the lung?", ["no"], [["Are there any signs in the lung?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lung_signs_nipple shadow"}], ["Is there a opacity in the lung?", ["yes"], [["Are there any signs in the lung?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lung_signs_opacity"}], ["In which part of the body?", ["right upper lobe"], [["Are there any signs in the lung?", ["yes"]], ["Is there a opacity in the lung?", ["yes"]]], {"answer_type": "multi_choice", "options": ["apex", "interstitial", "left costophrenic angle", "left hilum", "left interstitial", "left lower lobe", "left upper lobe", "middle lobe", "pulmonary alveoli", "right costophrenic angle", "right hilum", "right interstitial", "right lower lobe", "right upper lobe"], "path": "lung_signs_opacity_body_region"}], ["What are the attributes?", ["focal"], [["Are there any signs in the lung?", ["yes"]], ["Is there a opacity in the lung?", ["yes"]], ["In which part of the body?", ["right upper lobe"]]], {"answer_type": "multi_choice", "options": ["diffuse", "focal", "irregular", "large", "multiple", "no selection", "patchy", "prominent", "reticular", "round", "scattered", "small", "streaky"], "path": "lung_signs_opacity_attributes"}], ["What is the degree?", ["no selection"], [["Are there any signs in the lung?", ["yes"]], ["Is there a opacity in the lung?", ["yes"]], ["In which part of the body?", ["right upper lobe"]], ["What are the attributes?", ["focal"]]], {"answer_type": "multi_choice", "options": ["abnormal", "chronic", "mild", "no selection", "severe"], "path": "lung_signs_opacity_degree"}], ["Is there another opacity in the lung?", ["no"], [["Are there any signs in the lung?", ["yes"]], ["Is there a opacity in the lung?", ["yes"]], ["In which part of the body?", ["right upper lobe"]], ["What are the attributes?", ["focal"]], ["What is the degree?", ["no selection"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lung_signs_opacity"}], ["Is there an thickening in the lung?", ["no"], [["Are there any signs in the lung?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lung_signs_thickening"}], ["Is there an volume loss in the lung?", ["no"], [["Are there any signs in the lung?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lung_signs_volume loss"}], ["Is there an pneumonectomy in the lung?", ["no"], [["Are there any signs in the lung?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lung_signs_pneumonectomy"}], ["Is there anything abnormal in the lung?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lung_body_regions"}], ["Are there any diseases in the lung?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lung_diseases"}], ["Are there any signs in the pleura?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "pleura_signs"}], ["Is there anything abnormal in the pleura?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "pleura_body_regions"}], ["Are there any diseases in the pleura?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "pleura_diseases"}], ["Are there any signs in the trachea?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "trachea_signs"}], ["Is there anything abnormal in the trachea?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "trachea_body_regions"}], ["Are there any diseases in the trachea?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "trachea_diseases"}], ["Are there any signs in the cardiovascular system?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_signs"}], ["Is there anything abnormal in the cardiovascular system?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_body_regions"}], ["Are there any diseases in the cardiovascular system?", ["yes"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_diseases"}], ["Is there aortic aneurysm in the cardiovascular system?", ["no"], [["Are there any diseases in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_diseases_aortic aneurysm"}], ["Is there atherosclerosis in the cardiovascular system?", ["no"], [["Are there any diseases in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_diseases_atherosclerosis"}], ["Is there cardiomegaly in the cardiovascular system?", ["no"], [["Are there any diseases in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_diseases_cardiomegaly"}], ["Is there heart failure in the cardiovascular system?", ["no"], [["Are there any diseases in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_diseases_heart failure"}], ["Is there pericardial effusion in the cardiovascular system?", ["no"], [["Are there any diseases in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_diseases_pericardial effusion"}], ["Is there calcinosis in the cardiovascular system?", ["yes"], [["Are there any diseases in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_diseases_calcinosis"}], ["In which part of the body?", ["aorta, thoracic"], [["Are there any diseases in the cardiovascular system?", ["yes"]], ["Is there calcinosis in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["aorta", "aorta, thoracic", "blood vessels", "coronary vessels", "mitral valve"], "path": "cardiovascular system_diseases_calcinosis_body_region"}], ["What are the attributes?", ["no selection"], [["Are there any diseases in the cardiovascular system?", ["yes"]], ["Is there calcinosis in the cardiovascular system?", ["yes"]], ["In which part of the body?", ["aorta, thoracic"]]], {"answer_type": "single_choice", "options": ["no selection", "prominent"], "path": "cardiovascular system_diseases_calcinosis_attributes"}], ["What is the degree?", ["severe"], [["Are there any diseases in the cardiovascular system?", ["yes"]], ["Is there calcinosis in the cardiovascular system?", ["yes"]], ["In which part of the body?", ["aorta, thoracic"]], ["What are the attributes?", ["no selection"]]], {"answer_type": "single_choice", "options": ["mild", "no selection", "severe"], "path": "cardiovascular system_diseases_calcinosis_degree"}], ["Is there cicatrix in the cardiovascular system?", ["no"], [["Are there any diseases in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_diseases_cicatrix"}], ["Is there calcified granuloma in the cardiovascular system?", ["no"], [["Are there any diseases in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_diseases_calcified granuloma"}], ["Is there nodule in the cardiovascular system?", ["no"], [["Are there any diseases in the cardiovascular system?", ["yes"]]], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "cardiovascular system_diseases_nodule"}], ["Are there any signs in the skeletal system?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_signs"}], ["Is there anything abnormal in the skeletal system?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_body_regions"}], ["Are there any diseases in the skeletal system?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "skeletal system_diseases"}], ["Are there any signs in the breast?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "breast_signs"}], ["Are there any diseases in the breast?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "breast_diseases"}], ["Are there any signs in the abdomen?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "abdomen_signs"}], ["Is there anything abnormal in the abdomen?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "abdomen_infos"}], ["Are there any diseases in the abdomen?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "abdomen_diseases"}], ["Are there any signs in the thorax?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "thorax_signs"}], ["Are there any diseases in the thorax?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "thorax_diseases"}], ["Are there any signs in the mediastinum?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "mediastinum_signs"}], ["Is there anything abnormal in the mediastinum?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "mediastinum_infos"}], ["Are there any diseases in the mediastinum?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "mediastinum_diseases"}], ["Is there anything abnormal in the lymph nodes?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lymph nodes_infos"}], ["Are there any diseases in the lymph nodes?", ["no"], [], {"answer_type": "single_choice", "options": ["yes", "no"], "path": "lymph nodes_diseases"}]]
之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/diff_text/diff_text_COCO_MedGemma_27B_IT.sh ADDED
@@ -0,0 +1,24 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/bin/bash
2
+ # export HF_ENDPOINT=https://hf-mirror.com
3
+ cd "$(dirname "$0")/../../.."
4
+
5
+ MODEL_PATH="../checkpoint/models/medgemma-27b-it"
6
+ COCO_ROOT="../benchmarks/COCO/val2014"
7
+ COCO_ANNOTATION_ROOT="../benchmarks/COCO"
8
+ OUTPUT_ROOT="grounding_results/MedGemma-27B-IT"
9
+
10
+ python grounding_diff_text.py \
11
+ --dataset COCO \
12
+ --q_type localization \
13
+ --model_path "$MODEL_PATH" \
14
+ --coco_root "$COCO_ROOT" \
15
+ --coco_annotation_root "$COCO_ANNOTATION_ROOT" \
16
+ --output_root "$OUTPUT_ROOT"
17
+
18
+ # python grounding_diff_text.py \
19
+ # --dataset COCO \
20
+ # --q_type attribute \
21
+ # --model_path "$MODEL_PATH" \
22
+ # --coco_root "$COCO_ROOT" \
23
+ # --coco_annotation_root "$COCO_ANNOTATION_ROOT" \
24
+ # --output_root "$OUTPUT_ROOT"
之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_COCO_HuatuoGPT_V_34B.sh ADDED
@@ -0,0 +1,24 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/bin/bash
2
+ # export HF_ENDPOINT=https://hf-mirror.com
3
+ cd "$(dirname "$0")/../../.."
4
+
5
+ MODEL_PATH="FreedomIntelligence/HuatuoGPT-Vision-34B"
6
+ COCO_ROOT="../benchmarks/COCO/val2014"
7
+ COCO_ANNOTATION_ROOT="../benchmarks/COCO"
8
+ OUTPUT_ROOT="grounding_results/HuatuoGPT-V-34B"
9
+
10
+ python grounding_mask_region.py \
11
+ --dataset COCO \
12
+ --q_type localization \
13
+ --model_path "$MODEL_PATH" \
14
+ --coco_root "$COCO_ROOT" \
15
+ --coco_annotation_root "$COCO_ANNOTATION_ROOT" \
16
+ --output_root "$OUTPUT_ROOT"
17
+
18
+ # python grounding_mask_region.py \
19
+ # --dataset COCO \
20
+ # --q_type attribute \
21
+ # --model_path "$MODEL_PATH" \
22
+ # --coco_root "$COCO_ROOT" \
23
+ # --coco_annotation_root "$COCO_ANNOTATION_ROOT" \
24
+ # --output_root "$OUTPUT_ROOT"
之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_COCO_LLaVA_13B.sh ADDED
@@ -0,0 +1,24 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/bin/bash
2
+ # export HF_ENDPOINT=https://hf-mirror.com
3
+ cd "$(dirname "$0")/../../.."
4
+
5
+ MODEL_PATH="llava-hf/llava-v1.6-vicuna-13b-hf"
6
+ COCO_ROOT="../benchmarks/COCO/val2014"
7
+ COCO_ANNOTATION_ROOT="../benchmarks/COCO"
8
+ OUTPUT_ROOT="grounding_results/LLaVA-13B"
9
+
10
+ python grounding_mask_region.py \
11
+ --dataset COCO \
12
+ --q_type localization \
13
+ --model_path "$MODEL_PATH" \
14
+ --coco_root "$COCO_ROOT" \
15
+ --coco_annotation_root "$COCO_ANNOTATION_ROOT" \
16
+ --output_root "$OUTPUT_ROOT"
17
+
18
+ # python grounding_mask_region.py \
19
+ # --dataset COCO \
20
+ # --q_type attribute \
21
+ # --model_path "$MODEL_PATH" \
22
+ # --coco_root "$COCO_ROOT" \
23
+ # --coco_annotation_root "$COCO_ANNOTATION_ROOT" \
24
+ # --output_root "$OUTPUT_ROOT"
之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_COCO_LLaVA_7B.sh ADDED
@@ -0,0 +1,24 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/bin/bash
2
+ # export HF_ENDPOINT=https://hf-mirror.com
3
+ cd "$(dirname "$0")/../../.."
4
+
5
+ MODEL_PATH="llava-hf/llava-v1.6-mistral-7b-hf"
6
+ COCO_ROOT="../benchmarks/COCO/val2014"
7
+ COCO_ANNOTATION_ROOT="../benchmarks/COCO"
8
+ OUTPUT_ROOT="grounding_results/LLaVA-7B"
9
+
10
+ python grounding_mask_region.py \
11
+ --dataset COCO \
12
+ --q_type localization \
13
+ --model_path "$MODEL_PATH" \
14
+ --coco_root "$COCO_ROOT" \
15
+ --coco_annotation_root "$COCO_ANNOTATION_ROOT" \
16
+ --output_root "$OUTPUT_ROOT"
17
+
18
+ # python grounding_mask_region.py \
19
+ # --dataset COCO \
20
+ # --q_type attribute \
21
+ # --model_path "$MODEL_PATH" \
22
+ # --coco_root "$COCO_ROOT" \
23
+ # --coco_annotation_root "$COCO_ANNOTATION_ROOT" \
24
+ # --output_root "$OUTPUT_ROOT"
之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_COCO_LLaVA_Med_7B.sh ADDED
@@ -0,0 +1,24 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/bin/bash
2
+ # export HF_ENDPOINT=https://hf-mirror.com
3
+ cd "$(dirname "$0")/../../.."
4
+
5
+ MODEL_PATH="microsoft/llava-med-v1.5-mistral-7b"
6
+ COCO_ROOT="../benchmarks/COCO/val2014"
7
+ COCO_ANNOTATION_ROOT="../benchmarks/COCO"
8
+ OUTPUT_ROOT="grounding_results/LLaVA-Med-7B"
9
+
10
+ python grounding_mask_region.py \
11
+ --dataset COCO \
12
+ --q_type localization \
13
+ --model_path "$MODEL_PATH" \
14
+ --coco_root "$COCO_ROOT" \
15
+ --coco_annotation_root "$COCO_ANNOTATION_ROOT" \
16
+ --output_root "$OUTPUT_ROOT"
17
+
18
+ # python grounding_mask_region.py \
19
+ # --dataset COCO \
20
+ # --q_type attribute \
21
+ # --model_path "$MODEL_PATH" \
22
+ # --coco_root "$COCO_ROOT" \
23
+ # --coco_annotation_root "$COCO_ANNOTATION_ROOT" \
24
+ # --output_root "$OUTPUT_ROOT"
之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_COCO_MedGemma_27B_IT.sh ADDED
@@ -0,0 +1,24 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/bin/bash
2
+ # export HF_ENDPOINT=https://hf-mirror.com
3
+ cd "$(dirname "$0")/../../.."
4
+
5
+ MODEL_PATH="../checkpoint/models/medgemma-27b-it"
6
+ COCO_ROOT="../benchmarks/COCO/val2014"
7
+ COCO_ANNOTATION_ROOT="../benchmarks/COCO"
8
+ OUTPUT_ROOT="grounding_results/MedGemma-27B-IT"
9
+
10
+ python grounding_mask_region.py \
11
+ --dataset COCO \
12
+ --q_type localization \
13
+ --model_path "$MODEL_PATH" \
14
+ --coco_root "$COCO_ROOT" \
15
+ --coco_annotation_root "$COCO_ANNOTATION_ROOT" \
16
+ --output_root "$OUTPUT_ROOT"
17
+
18
+ # python grounding_mask_region.py \
19
+ # --dataset COCO \
20
+ # --q_type attribute \
21
+ # --model_path "$MODEL_PATH" \
22
+ # --coco_root "$COCO_ROOT" \
23
+ # --coco_annotation_root "$COCO_ANNOTATION_ROOT" \
24
+ # --output_root "$OUTPUT_ROOT"
之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_COCO_Qwen25VL_32B.sh ADDED
@@ -0,0 +1,24 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/bin/bash
2
+ # export HF_ENDPOINT=https://hf-mirror.com
3
+ cd "$(dirname "$0")/../../.."
4
+
5
+ MODEL_PATH="Qwen/Qwen2.5-VL-32B-Instruct"
6
+ COCO_ROOT="../benchmarks/COCO/val2014"
7
+ COCO_ANNOTATION_ROOT="../benchmarks/COCO"
8
+ OUTPUT_ROOT="grounding_results/Qwen2.5VL-32B"
9
+
10
+ python grounding_mask_region.py \
11
+ --dataset COCO \
12
+ --q_type localization \
13
+ --model_path "$MODEL_PATH" \
14
+ --coco_root "$COCO_ROOT" \
15
+ --coco_annotation_root "$COCO_ANNOTATION_ROOT" \
16
+ --output_root "$OUTPUT_ROOT"
17
+
18
+ # python grounding_mask_region.py \
19
+ # --dataset COCO \
20
+ # --q_type attribute \
21
+ # --model_path "$MODEL_PATH" \
22
+ # --coco_root "$COCO_ROOT" \
23
+ # --coco_annotation_root "$COCO_ANNOTATION_ROOT" \
24
+ # --output_root "$OUTPUT_ROOT"
之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_COCO_Qwen25VL_3B.sh ADDED
@@ -0,0 +1,24 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/bin/bash
2
+ # export HF_ENDPOINT=https://hf-mirror.com
3
+ cd "$(dirname "$0")/../../.."
4
+
5
+ MODEL_PATH="Qwen/Qwen2.5-VL-3B-Instruct"
6
+ COCO_ROOT="../benchmarks/COCO/val2014"
7
+ COCO_ANNOTATION_ROOT="../benchmarks/COCO"
8
+ OUTPUT_ROOT="grounding_results/Qwen2.5VL-3B"
9
+
10
+ python grounding_mask_region.py \
11
+ --dataset COCO \
12
+ --q_type localization \
13
+ --model_path "$MODEL_PATH" \
14
+ --coco_root "$COCO_ROOT" \
15
+ --coco_annotation_root "$COCO_ANNOTATION_ROOT" \
16
+ --output_root "$OUTPUT_ROOT"
17
+
18
+ # python grounding_mask_region.py \
19
+ # --dataset COCO \
20
+ # --q_type attribute \
21
+ # --model_path "$MODEL_PATH" \
22
+ # --coco_root "$COCO_ROOT" \
23
+ # --coco_annotation_root "$COCO_ANNOTATION_ROOT" \
24
+ # --output_root "$OUTPUT_ROOT"
之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_VGMED_HuatuoGPT_V_34B.sh ADDED
@@ -0,0 +1,21 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/bin/bash
2
+ # export HF_ENDPOINT=https://hf-mirror.com
3
+ cd "$(dirname "$0")/../../.."
4
+
5
+ MODEL_PATH="FreedomIntelligence/HuatuoGPT-Vision-34B"
6
+ VGMED_ROOT="../benchmarks/VGMED"
7
+ OUTPUT_ROOT="grounding_results/HuatuoGPT-V-34B"
8
+
9
+ python grounding_mask_region.py \
10
+ --dataset VGMED \
11
+ --q_type localization \
12
+ --model_path "$MODEL_PATH" \
13
+ --vgmed_root "$VGMED_ROOT" \
14
+ --output_root "$OUTPUT_ROOT"
15
+
16
+ # python grounding_mask_region.py \
17
+ # --dataset VGMED \
18
+ # --q_type attribute \
19
+ # --model_path "$MODEL_PATH" \
20
+ # --vgmed_root "$VGMED_ROOT" \
21
+ # --output_root "$OUTPUT_ROOT"
之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_VGMED_LLaVA_7B.sh ADDED
@@ -0,0 +1,21 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/bin/bash
2
+ # export HF_ENDPOINT=https://hf-mirror.com
3
+ cd "$(dirname "$0")/../../.."
4
+
5
+ MODEL_PATH="llava-hf/llava-v1.6-mistral-7b-hf"
6
+ VGMED_ROOT="../benchmarks/VGMED"
7
+ OUTPUT_ROOT="grounding_results/LLaVA-7B"
8
+
9
+ python grounding_mask_region.py \
10
+ --dataset VGMED \
11
+ --q_type localization \
12
+ --model_path "$MODEL_PATH" \
13
+ --vgmed_root "$VGMED_ROOT" \
14
+ --output_root "$OUTPUT_ROOT"
15
+
16
+ # python grounding_mask_region.py \
17
+ # --dataset VGMED \
18
+ # --q_type attribute \
19
+ # --model_path "$MODEL_PATH" \
20
+ # --vgmed_root "$VGMED_ROOT" \
21
+ # --output_root "$OUTPUT_ROOT"
之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_VGMED_LLaVA_Med_7B.sh ADDED
@@ -0,0 +1,21 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/bin/bash
2
+ # export HF_ENDPOINT=https://hf-mirror.com
3
+ cd "$(dirname "$0")/../../.."
4
+
5
+ MODEL_PATH="microsoft/llava-med-v1.5-mistral-7b"
6
+ VGMED_ROOT="../benchmarks/VGMED"
7
+ OUTPUT_ROOT="grounding_results/LLaVA-Med-7B"
8
+
9
+ python grounding_mask_region.py \
10
+ --dataset VGMED \
11
+ --q_type localization \
12
+ --model_path "$MODEL_PATH" \
13
+ --vgmed_root "$VGMED_ROOT" \
14
+ --output_root "$OUTPUT_ROOT"
15
+
16
+ # python grounding_mask_region.py \
17
+ # --dataset VGMED \
18
+ # --q_type attribute \
19
+ # --model_path "$MODEL_PATH" \
20
+ # --vgmed_root "$VGMED_ROOT" \
21
+ # --output_root "$OUTPUT_ROOT"
之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_VGMED_Qwen25VL_32B.sh ADDED
@@ -0,0 +1,21 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/bin/bash
2
+ # export HF_ENDPOINT=https://hf-mirror.com
3
+ cd "$(dirname "$0")/../../.."
4
+
5
+ MODEL_PATH="Qwen/Qwen2.5-VL-32B-Instruct"
6
+ VGMED_ROOT="../benchmarks/VGMED"
7
+ OUTPUT_ROOT="grounding_results/Qwen2.5VL-32B"
8
+
9
+ python grounding_mask_region.py \
10
+ --dataset VGMED \
11
+ --q_type localization \
12
+ --model_path "$MODEL_PATH" \
13
+ --vgmed_root "$VGMED_ROOT" \
14
+ --output_root "$OUTPUT_ROOT"
15
+
16
+ # python grounding_mask_region.py \
17
+ # --dataset VGMED \
18
+ # --q_type attribute \
19
+ # --model_path "$MODEL_PATH" \
20
+ # --vgmed_root "$VGMED_ROOT" \
21
+ # --output_root "$OUTPUT_ROOT"
之前的代码版本/第一版-全部代码/MedEvalKit-v1-v1-fullcode/eval_scripts/grounding/mask_region/mask_region_VGMED_Qwen25VL_3B.sh ADDED
@@ -0,0 +1,21 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/bin/bash
2
+ # export HF_ENDPOINT=https://hf-mirror.com
3
+ cd "$(dirname "$0")/../../.."
4
+
5
+ MODEL_PATH="Qwen/Qwen2.5-VL-3B-Instruct"
6
+ VGMED_ROOT="../benchmarks/VGMED"
7
+ OUTPUT_ROOT="grounding_results/Qwen2.5VL-3B"
8
+
9
+ python grounding_mask_region.py \
10
+ --dataset VGMED \
11
+ --q_type localization \
12
+ --model_path "$MODEL_PATH" \
13
+ --vgmed_root "$VGMED_ROOT" \
14
+ --output_root "$OUTPUT_ROOT"
15
+
16
+ # python grounding_mask_region.py \
17
+ # --dataset VGMED \
18
+ # --q_type attribute \
19
+ # --model_path "$MODEL_PATH" \
20
+ # --vgmed_root "$VGMED_ROOT" \
21
+ # --output_root "$OUTPUT_ROOT"