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import gc |
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import hashlib |
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import inspect |
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import os |
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import re |
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import sys |
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import time |
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from distutils.core import Distribution, Extension |
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from distutils.command.build_ext import build_ext |
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import Cython |
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from ..Compiler.Main import Context |
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from ..Compiler.Options import (default_options, CompilationOptions, |
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get_directive_defaults) |
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from ..Compiler.Visitor import CythonTransform, EnvTransform |
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from ..Compiler.ParseTreeTransforms import SkipDeclarations |
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from ..Compiler.TreeFragment import parse_from_strings |
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from .Dependencies import strip_string_literals, cythonize, cached_function |
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from .Cache import get_cython_cache_dir |
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from ..Compiler import Pipeline |
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import cython as cython_module |
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import importlib.util |
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from importlib.machinery import ExtensionFileLoader |
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def load_dynamic(name, path): |
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spec = importlib.util.spec_from_file_location(name, loader=ExtensionFileLoader(name, path)) |
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module = importlib.util.module_from_spec(spec) |
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spec.loader.exec_module(module) |
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return module |
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class UnboundSymbols(EnvTransform, SkipDeclarations): |
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def __init__(self): |
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super(EnvTransform, self).__init__(context=None) |
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self.unbound = set() |
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def visit_NameNode(self, node): |
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if not self.current_env().lookup(node.name): |
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self.unbound.add(node.name) |
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return node |
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def __call__(self, node): |
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super().__call__(node) |
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return self.unbound |
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@cached_function |
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def unbound_symbols(code, context=None): |
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if context is None: |
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context = Context([], get_directive_defaults(), |
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options=CompilationOptions(default_options)) |
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from ..Compiler.ParseTreeTransforms import AnalyseDeclarationsTransform |
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tree = parse_from_strings('(tree fragment)', code) |
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for phase in Pipeline.create_pipeline(context, 'pyx'): |
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if phase is None: |
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continue |
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tree = phase(tree) |
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if isinstance(phase, AnalyseDeclarationsTransform): |
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break |
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import builtins |
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return tuple(UnboundSymbols()(tree) - set(dir(builtins))) |
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def unsafe_type(arg, context=None): |
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py_type = type(arg) |
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if py_type is int: |
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return 'long' |
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else: |
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return safe_type(arg, context) |
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def safe_type(arg, context=None): |
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py_type = type(arg) |
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if py_type in (list, tuple, dict, str): |
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return py_type.__name__ |
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elif py_type is complex: |
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return 'double complex' |
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elif py_type is float: |
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return 'double' |
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elif py_type is bool: |
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return 'bint' |
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elif 'numpy' in sys.modules and isinstance(arg, sys.modules['numpy'].ndarray): |
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return 'numpy.ndarray[numpy.%s_t, ndim=%s]' % (arg.dtype.name, arg.ndim) |
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else: |
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for base_type in py_type.__mro__: |
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if base_type.__module__ in ('__builtin__', 'builtins'): |
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return 'object' |
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module = context.find_module(base_type.__module__, need_pxd=False) |
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if module: |
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entry = module.lookup(base_type.__name__) |
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if entry.is_type: |
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return '%s.%s' % (base_type.__module__, base_type.__name__) |
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return 'object' |
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def _get_build_extension(): |
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dist = Distribution() |
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config_files = dist.find_config_files() |
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dist.parse_config_files(config_files) |
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build_extension = build_ext(dist) |
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build_extension.finalize_options() |
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return build_extension |
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@cached_function |
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def _create_context(cython_include_dirs): |
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return Context( |
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list(cython_include_dirs), |
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get_directive_defaults(), |
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options=CompilationOptions(default_options) |
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) |
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_cython_inline_cache = {} |
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_cython_inline_default_context = _create_context(('.',)) |
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def _populate_unbound(kwds, unbound_symbols, locals=None, globals=None): |
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for symbol in unbound_symbols: |
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if symbol not in kwds: |
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if locals is None or globals is None: |
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calling_frame = inspect.currentframe().f_back.f_back.f_back |
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if locals is None: |
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locals = calling_frame.f_locals |
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if globals is None: |
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globals = calling_frame.f_globals |
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if not isinstance(locals, dict): |
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locals = dict(locals) |
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if symbol in locals: |
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kwds[symbol] = locals[symbol] |
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elif symbol in globals: |
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kwds[symbol] = globals[symbol] |
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else: |
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print("Couldn't find %r" % symbol) |
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def _inline_key(orig_code, arg_sigs, language_level): |
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key = orig_code, arg_sigs, sys.version_info, sys.executable, language_level, Cython.__version__ |
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return hashlib.sha256(str(key).encode('utf-8')).hexdigest() |
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def cython_inline(code, get_type=unsafe_type, |
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lib_dir=os.path.join(get_cython_cache_dir(), 'inline'), |
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cython_include_dirs=None, cython_compiler_directives=None, |
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force=False, quiet=False, locals=None, globals=None, language_level=None, **kwds): |
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if get_type is None: |
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get_type = lambda x: 'object' |
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ctx = _create_context(tuple(cython_include_dirs)) if cython_include_dirs else _cython_inline_default_context |
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cython_compiler_directives = dict(cython_compiler_directives) if cython_compiler_directives else {} |
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if language_level is None and 'language_level' not in cython_compiler_directives: |
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language_level = '3' |
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if language_level is not None: |
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cython_compiler_directives['language_level'] = language_level |
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key_hash = None |
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_unbound_symbols = _cython_inline_cache.get(code) |
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if _unbound_symbols is not None: |
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_populate_unbound(kwds, _unbound_symbols, locals, globals) |
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args = sorted(kwds.items()) |
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arg_sigs = tuple([(get_type(value, ctx), arg) for arg, value in args]) |
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key_hash = _inline_key(code, arg_sigs, language_level) |
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invoke = _cython_inline_cache.get((code, arg_sigs, key_hash)) |
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if invoke is not None: |
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arg_list = [arg[1] for arg in args] |
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return invoke(*arg_list) |
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orig_code = code |
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code, literals = strip_string_literals(code) |
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code = strip_common_indent(code) |
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if locals is None: |
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locals = inspect.currentframe().f_back.f_back.f_locals |
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if globals is None: |
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globals = inspect.currentframe().f_back.f_back.f_globals |
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try: |
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_cython_inline_cache[orig_code] = _unbound_symbols = unbound_symbols(code) |
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_populate_unbound(kwds, _unbound_symbols, locals, globals) |
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except AssertionError: |
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if not quiet: |
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print("Could not parse code as a string (to extract unbound symbols).") |
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cimports = [] |
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for name, arg in list(kwds.items()): |
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if arg is cython_module: |
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cimports.append('\ncimport cython as %s' % name) |
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del kwds[name] |
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arg_names = sorted(kwds) |
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arg_sigs = tuple([(get_type(kwds[arg], ctx), arg) for arg in arg_names]) |
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if key_hash is None: |
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key_hash = _inline_key(orig_code, arg_sigs, language_level) |
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module_name = "_cython_inline_" + key_hash |
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if module_name in sys.modules: |
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module = sys.modules[module_name] |
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else: |
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build_extension = None |
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if cython_inline.so_ext is None: |
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build_extension = _get_build_extension() |
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cython_inline.so_ext = build_extension.get_ext_filename('') |
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lib_dir = os.path.abspath(lib_dir) |
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module_path = os.path.join(lib_dir, module_name + cython_inline.so_ext) |
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if not os.path.exists(lib_dir): |
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os.makedirs(lib_dir) |
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if force or not os.path.isfile(module_path): |
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cflags = [] |
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define_macros = [] |
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c_include_dirs = [] |
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qualified = re.compile(r'([.\w]+)[.]') |
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for type, _ in arg_sigs: |
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m = qualified.match(type) |
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if m: |
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cimports.append('\ncimport %s' % m.groups()[0]) |
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if m.groups()[0] == 'numpy': |
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import numpy |
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c_include_dirs.append(numpy.get_include()) |
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define_macros.append(("NPY_NO_DEPRECATED_API", "NPY_1_7_API_VERSION")) |
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module_body, func_body = extract_func_code(code) |
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params = ', '.join(['%s %s' % a for a in arg_sigs]) |
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module_code = """ |
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%(module_body)s |
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%(cimports)s |
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def __invoke(%(params)s): |
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%(func_body)s |
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return locals() |
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""" % {'cimports': '\n'.join(cimports), |
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'module_body': module_body, |
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'params': params, |
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'func_body': func_body } |
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for key, value in literals.items(): |
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module_code = module_code.replace(key, value) |
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pyx_file = os.path.join(lib_dir, module_name + '.pyx') |
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fh = open(pyx_file, 'w') |
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try: |
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fh.write(module_code) |
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finally: |
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fh.close() |
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extension = Extension( |
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name=module_name, |
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sources=[pyx_file], |
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include_dirs=c_include_dirs or None, |
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extra_compile_args=cflags or None, |
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define_macros=define_macros or None, |
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) |
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if build_extension is None: |
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build_extension = _get_build_extension() |
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build_extension.extensions = cythonize( |
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[extension], |
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include_path=cython_include_dirs or ['.'], |
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compiler_directives=cython_compiler_directives, |
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quiet=quiet) |
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build_extension.build_temp = os.path.dirname(pyx_file) |
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build_extension.build_lib = lib_dir |
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build_extension.run() |
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if sys.platform == 'win32' and sys.version_info >= (3, 8): |
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with os.add_dll_directory(os.path.abspath(lib_dir)): |
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module = load_dynamic(module_name, module_path) |
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else: |
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module = load_dynamic(module_name, module_path) |
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_cython_inline_cache[orig_code, arg_sigs, key_hash] = module.__invoke |
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arg_list = [kwds[arg] for arg in arg_names] |
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return module.__invoke(*arg_list) |
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_CYMEIT_TEMPLATE = """ |
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def __PYX_repeat_benchmark(benchmark, timer, size_t number): |
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cdef size_t i |
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t0 = timer() |
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for i in range(number): |
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benchmark() |
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t1 = timer() |
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return t1 - t0 |
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def __PYX_make_benchmark(): |
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{setup_code} |
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def __PYX_run_benchmark(): |
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{benchmark_code} |
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return __PYX_run_benchmark |
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""" |
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def cymeit(code, setup_code=None, import_module=None, directives=None, timer=time.perf_counter, repeat=9): |
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"""Benchmark a Cython code string similar to 'timeit'. |
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'setup_code': string of setup code that will be run before taking the timings. |
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'import_module': a module namespace to run the benchmark in |
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(usually a compiled Cython module). |
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'directives': Cython directives to use when compiling the benchmark code. |
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'timer': The timer function. Defaults to 'time.perf_counter', returning float seconds. |
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Nanosecond timers are detected (and can only be used) if they return integers. |
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'repeat': The number of timings to take and return. |
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Returns a tuple: (list of single-loop timings, number of loops run for each) |
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""" |
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import textwrap |
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setup_code = strip_common_indent(setup_code) if setup_code else '' |
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code = strip_common_indent(code) if code.strip() else 'pass' |
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module_namespace = __import__(import_module).__dict__ if import_module else None |
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cymeit_code = _CYMEIT_TEMPLATE.format( |
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setup_code=textwrap.indent(setup_code, ' '*4).strip(), |
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benchmark_code=textwrap.indent(code, ' '*8).strip(), |
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) |
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namespace = cython_inline( |
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cymeit_code, |
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cython_compiler_directives=directives, |
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locals=module_namespace, |
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) |
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make_benchmark = namespace['__PYX_make_benchmark'] |
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repeat_benchmark = namespace['__PYX_repeat_benchmark'] |
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def timeit(number): |
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benchmark = make_benchmark() |
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gcold = gc.isenabled() |
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gc.disable() |
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try: |
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timing = repeat_benchmark(benchmark, timer, number) |
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finally: |
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if gcold: |
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gc.enable() |
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return timing |
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timer_returns_nanoseconds = isinstance(timer(), int) |
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one_second = 1_000_000_000 if timer_returns_nanoseconds else 1.0 |
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min_runtime = one_second // 5 if timer_returns_nanoseconds else one_second / 5 |
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def autorange(): |
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i = 1 |
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while True: |
|
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for j in 1, 2, 5: |
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number = i * j |
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time_taken = timeit(number) |
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assert isinstance(time_taken, int if timer_returns_nanoseconds else float) |
|
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if time_taken >= min_runtime: |
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return number |
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|
elif timer_returns_nanoseconds and (time_taken < 10 and number >= 10): |
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|
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raise RuntimeError(f"Timer seems to return non-ns timings: {timer}") |
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i *= 10 |
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autorange() |
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number = autorange() |
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|
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timings = [ |
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timeit(number) |
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for _ in range(repeat) |
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] |
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|
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half = number // 2 |
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timings = [ |
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(timing + half) // number if timer_returns_nanoseconds else timing / number |
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for timing in timings |
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] |
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return (timings, number) |
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|
|
cython_inline.so_ext = None |
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|
|
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_find_non_space = re.compile(r'\S').search |
|
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|
|
|
|
|
|
def strip_common_indent(code): |
|
|
min_indent = None |
|
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lines = code.splitlines() |
|
|
for line in lines: |
|
|
match = _find_non_space(line) |
|
|
if not match: |
|
|
continue |
|
|
indent = match.start() |
|
|
if line[indent] == '#': |
|
|
continue |
|
|
if min_indent is None or min_indent > indent: |
|
|
min_indent = indent |
|
|
for ix, line in enumerate(lines): |
|
|
match = _find_non_space(line) |
|
|
if not match or not line or line[indent:indent+1] == '#': |
|
|
continue |
|
|
lines[ix] = line[min_indent:] |
|
|
return '\n'.join(lines) |
|
|
|
|
|
|
|
|
module_statement = re.compile(r'^((cdef +(extern|class))|cimport|(from .+ cimport)|(from .+ import +[*]))') |
|
|
def extract_func_code(code): |
|
|
module = [] |
|
|
function = [] |
|
|
current = function |
|
|
code = code.replace('\t', ' ') |
|
|
lines = code.split('\n') |
|
|
for line in lines: |
|
|
if not line.startswith(' '): |
|
|
if module_statement.match(line): |
|
|
current = module |
|
|
else: |
|
|
current = function |
|
|
current.append(line) |
|
|
return '\n'.join(module), ' ' + '\n '.join(function) |
|
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|
|
|
|
|
|
def get_body(source): |
|
|
ix = source.index(':') |
|
|
if source[:5] == 'lambda': |
|
|
return "return %s" % source[ix+1:] |
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|
else: |
|
|
return source[ix+1:] |
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|
|
|
|
|
|
|
|
|
|
|
|
class RuntimeCompiledFunction: |
|
|
|
|
|
def __init__(self, f): |
|
|
self._f = f |
|
|
self._body = get_body(inspect.getsource(f)) |
|
|
|
|
|
def __call__(self, *args, **kwds): |
|
|
all = inspect.getcallargs(self._f, *args, **kwds) |
|
|
return cython_inline(self._body, locals=self._f.__globals__, globals=self._f.__globals__, **all) |
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|