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Datasets:
MatthewCorney
/
gene-benchmark

Tasks:
Tabular Classification
Tabular Regression
Languages:
English
Size:
10K<n<100K
Tags:
biology
genomics
bioinformatics
gene-embeddings
benchmark
disease
License:
Dataset card Data Studio Files
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MatthewCorney commited on
Commit
aedb872
·
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1 Parent(s): ce5b8b4

Upload gene benchmark datasets

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Files changed (21) hide show
  1. expression/classification/hpa_protein/summary.csv +21 -0
  2. expression/regression/hpa_rna/adipose_tissue_matrix.csv +0 -0
  3. expression/regression/hpa_rna/adrenal_gland_matrix.csv +0 -0
  4. expression/regression/hpa_rna/bone_marrow_matrix.csv +0 -0
  5. expression/regression/hpa_rna/cerebellum_matrix.csv +0 -0
  6. expression/regression/hpa_rna/cerebral_cortex_matrix.csv +0 -0
  7. expression/regression/hpa_rna/colon_matrix.csv +0 -0
  8. expression/regression/hpa_rna/heart_muscle_matrix.csv +0 -0
  9. expression/regression/hpa_rna/kidney_matrix.csv +0 -0
  10. expression/regression/hpa_rna/liver_matrix.csv +0 -0
  11. expression/regression/hpa_rna/lung_matrix.csv +0 -0
  12. expression/regression/hpa_rna/lymph_node_matrix.csv +0 -0
  13. expression/regression/hpa_rna/ovary_matrix.csv +0 -0
  14. expression/regression/hpa_rna/pancreas_matrix.csv +0 -0
  15. expression/regression/hpa_rna/skeletal_muscle_matrix.csv +0 -0
  16. expression/regression/hpa_rna/skin_matrix.csv +0 -0
  17. expression/regression/hpa_rna/small_intestine_matrix.csv +0 -0
  18. expression/regression/hpa_rna/spleen_matrix.csv +0 -0
  19. expression/regression/hpa_rna/stomach_matrix.csv +0 -0
  20. expression/regression/hpa_rna/testis_matrix.csv +0 -0
  21. expression/regression/hpa_rna/thyroid_gland_matrix.csv +0 -0
expression/classification/hpa_protein/summary.csv ADDED
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+ class_id,class_name,number_annotated,source
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+ cerebral_cortex,Cerebral cortex,10016,hpa_protein
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+ colon,Colon,10267,hpa_protein
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+ kidney,Kidney,10187,hpa_protein
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+ liver,Liver,7780,hpa_protein
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+ lung,Lung,9111,hpa_protein
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+ pancreas,Pancreas,9191,hpa_protein
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+ skin,Skin,9610,hpa_protein
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+ small_intestine,Small intestine,9731,hpa_protein
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+ stomach,Stomach,9864,hpa_protein
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+ testis,Testis,10957,hpa_protein
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+ thyroid_gland,Thyroid gland,8877,hpa_protein
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+ adipose_tissue,Adipose tissue,4829,hpa_protein
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+ adrenal_gland,Adrenal gland,9198,hpa_protein
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+ bone_marrow,Bone marrow,7908,hpa_protein
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+ cerebellum,Cerebellum,8837,hpa_protein
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+ heart_muscle,Heart muscle,7908,hpa_protein
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+ lymph_node,Lymph node,7869,hpa_protein
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+ ovary,Ovary,6594,hpa_protein
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+ skeletal_muscle,Skeletal muscle,7321,hpa_protein
21
+ spleen,Spleen,7091,hpa_protein
expression/regression/hpa_rna/adipose_tissue_matrix.csv ADDED
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expression/regression/hpa_rna/adrenal_gland_matrix.csv ADDED
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expression/regression/hpa_rna/bone_marrow_matrix.csv ADDED
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expression/regression/hpa_rna/cerebellum_matrix.csv ADDED
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expression/regression/hpa_rna/cerebral_cortex_matrix.csv ADDED
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expression/regression/hpa_rna/colon_matrix.csv ADDED
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expression/regression/hpa_rna/heart_muscle_matrix.csv ADDED
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expression/regression/hpa_rna/kidney_matrix.csv ADDED
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expression/regression/hpa_rna/liver_matrix.csv ADDED
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expression/regression/hpa_rna/lung_matrix.csv ADDED
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expression/regression/hpa_rna/lymph_node_matrix.csv ADDED
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expression/regression/hpa_rna/ovary_matrix.csv ADDED
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expression/regression/hpa_rna/pancreas_matrix.csv ADDED
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expression/regression/hpa_rna/skeletal_muscle_matrix.csv ADDED
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expression/regression/hpa_rna/skin_matrix.csv ADDED
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expression/regression/hpa_rna/small_intestine_matrix.csv ADDED
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expression/regression/hpa_rna/spleen_matrix.csv ADDED
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expression/regression/hpa_rna/stomach_matrix.csv ADDED
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expression/regression/hpa_rna/testis_matrix.csv ADDED
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expression/regression/hpa_rna/thyroid_gland_matrix.csv ADDED
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