#!/usr/bin/env python3 # -*- coding: utf-8 -*- """ Orchestrate the 21 runs (7 datasets x 3 models) across 8 GPUs. - RetFound : official RETFound/main_finetune.py (ViT-L, RETFound_mae_natureCFP weights) - ResNet : train_cnn_vit.py resnet50 (ImageNet pretrained) - ViT : train_cnn_vit.py vit_base_patch16_224 (ImageNet pretrained) Each job = "train && evaluate.py"; pinned to one free GPU via CUDA_VISIBLE_DEVICES. At most len(GPUS) jobs run concurrently. Use --dry_run to print the plan. """ import os, sys, time, json, argparse, subprocess from itertools import product PROJ = "/mnt/tidal-alsh-share2/dataset/qinshengqian/research/c3/GPT-Image" DSROOT = f"{PROJ}/Dataset" CODE = f"{PROJ}/Code" RETF = f"{CODE}/RETFound" CFP = f"{PROJ}/weights/pretrained/RETFound_mae_natureCFP.pth" RESULTS = f"{PROJ}/results" PY = "/root/miniconda3/envs/retfound/bin/python" TORCHRUN = "/root/miniconda3/envs/retfound/bin/torchrun" GPUS = [0, 1, 2, 3, 4, 5, 6, 7] # key : (rel_path, nb_classes, epochs, class_names) DATASETS = { "mmac": ("Myopia/Classification_of_Myopic_Maculopathy", 5, 50, "g0,g1,g2,g3,g4"), "adam": ("AMD/adamdataset", 2, 50, "NonAMD,AMD"), "airogs": ("Glaucoma/eyepacs-airogs-light", 2, 30, "NRG,RG"), "papila": ("Glaucoma/papila-retinal-fundus-images", 2, 50, "healthy,glaucoma"), "idrid": ("DR/idrid-dataset", 5, 50, "g0,g1,g2,g3,g4"), "aptos": ("DR/aptos2019", 5, 30, "g0,g1,g2,g3,g4"), "deepdrid": ("DR/deepdrid", 5, 50, "g0,g1,g2,g3,g4"), } MODELS = ["retfound", "resnet", "vit"] def train_cmd(model, dsk, port): rel, nc, ep, _ = DATASETS[dsk] dpath = f"{DSROOT}/{rel}" odir = f"{RESULTS}/{dsk}" if model == "retfound": return (f"cd {RETF} && {TORCHRUN} --nproc_per_node=1 --master_port={port} " f"main_finetune.py --model RETFound_mae --model_arch retfound_mae " f"--finetune {CFP} --savemodel --global_pool --batch_size 32 --world_size 1 " f"--epochs {ep} --nb_classes {nc} --data_path {dpath} --input_size 224 " f"--task retfound --output_dir {odir} --adaptation finetune") timm_name = "resnet50" if model == "resnet" else "vit_base_patch16_224" # ViT-specific fine-tuning recipe (lower lr + layer-wise lr decay + drop-path + label smoothing) extra = ("" if model == "resnet" else " --lr 1e-4 --layer_decay 0.65 --drop_path 0.1 --label_smoothing 0.1 --warmup_epochs 5") return (f"cd {CODE} && {PY} train_cnn_vit.py --data_path {dpath} --nb_classes {nc} " f"--model {timm_name} --input_size 224 --batch_size 64 --epochs {ep} " f"--output_dir {odir} --task {model}{extra}") def job_cmd(model, dsk, port): _, _, _, names = DATASETS[dsk] run_dir = f"{RESULTS}/{dsk}/{model}" return (f"{train_cmd(model, dsk, port)} && " f"{PY} {CODE}/evaluate.py --run_dir {run_dir} --class_names {names}") def main(): ap = argparse.ArgumentParser() ap.add_argument("--dry_run", action="store_true") ap.add_argument("--only_models", default="") # e.g. resnet,vit ap.add_argument("--only_datasets", default="") # e.g. idrid,adam args = ap.parse_args() models = args.only_models.split(",") if args.only_models else MODELS dsets = args.only_datasets.split(",") if args.only_datasets else list(DATASETS) jobs = [] for i, (dsk, model) in enumerate(product(dsets, models)): run_dir = f"{RESULTS}/{dsk}/{model}" os.makedirs(run_dir, exist_ok=True) jobs.append({"name": f"{dsk}/{model}", "dsk": dsk, "model": model, "port": 29500 + i, "run_dir": run_dir, "cmd": job_cmd(model, dsk, 29500 + i)}) print(f"=== {len(jobs)} jobs over {len(GPUS)} GPUs ===") for j in jobs: print(f" {j['name']}") if args.dry_run: print("\n--- sample command ---\n" + jobs[0]["cmd"]) return free = list(GPUS) running = {} # pid -> (job, gpu, fh) pending = list(jobs) done, failed = [], [] while pending or running: while pending and free: g = free.pop(0) j = pending.pop(0) env = dict(os.environ, CUDA_VISIBLE_DEVICES=str(g)) fh = open(os.path.join(j["run_dir"], "train.log"), "w") p = subprocess.Popen(["bash", "-lc", j["cmd"]], env=env, stdout=fh, stderr=subprocess.STDOUT) running[p.pid] = (j, g, fh, p) print(f"[launch] GPU{g} {j['name']} (pid {p.pid}) [{len(done)+len(failed)}/{len(jobs)} done]") time.sleep(10) for pid in list(running): j, g, fh, p = running[pid] rc = p.poll() if rc is None: continue fh.close(); free.append(g); del running[pid] ok = (rc == 0 and os.path.isfile(os.path.join(j["run_dir"], "metrics.json"))) (done if ok else failed).append(j["name"]) print(f"[{'done' if ok else 'FAIL'}] GPU{g} {j['name']} rc={rc} " f"[{len(done)+len(failed)}/{len(jobs)}]") print(f"\n=== finished: {len(done)} ok, {len(failed)} failed ===") if failed: print("FAILED:", failed) if __name__ == "__main__": main()